AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197290 MtrunA17_Chr8g0365971 95.263 190 9 0 1 190 1 190 1.63e-132 370
Msa1197290 MtrunA17_Chr8g0366021 92.105 190 11 2 1 190 1 186 1.26e-120 349
Msa1197290 MtrunA17_Chr8g0365991 91.195 159 10 2 1 159 1 155 5.27e-98 281
Msa1197290 MtrunA17_Chr7g0220531 53.333 180 71 2 11 190 22 188 2.83e-57 186
Msa1197290 MtrunA17_Chr6g0455911 49.733 187 81 1 4 190 6 179 3.19e-54 179
Msa1197290 MtrunA17_Chr6g0455951 51.786 168 80 1 23 190 17 183 1.02e-49 167
Msa1197290 MtrunA17_Chr6g0455941 49.730 185 79 2 6 190 16 186 2.37e-47 160
Msa1197290 MtrunA17_Chr6g0455981 50.877 171 79 1 25 190 11 181 4.57e-46 157
Msa1197290 MtrunA17_Chr5g0437951 38.953 172 102 1 22 190 1 172 6.06e-37 132
Msa1197290 MtrunA17_Chr5g0437961 46.429 140 75 0 42 181 10 149 6.40e-37 132
Msa1197290 MtrunA17_Chr3g0114351 48.951 143 71 1 46 186 17 159 2.65e-36 131
Msa1197290 MtrunA17_Chr2g0333321 48.529 136 66 1 54 189 78 209 2.24e-35 129
Msa1197290 MtrunA17_Chr3g0114341 42.708 96 55 0 44 139 15 110 6.20e-21 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197290 AT3G30390.1 52.973 185 70 3 4 188 13 180 4.63e-57 186
Msa1197290 AT3G30390.3 52.973 185 70 3 4 188 13 180 4.63e-57 186
Msa1197290 AT3G30390.2 52.973 185 70 3 4 188 13 180 4.63e-57 186
Msa1197290 AT5G38820.1 51.705 176 70 2 16 190 13 174 1.30e-51 172
Msa1197290 AT5G38820.3 51.705 176 70 2 16 190 13 174 1.30e-51 172
Msa1197290 AT5G38820.2 51.705 176 70 2 16 190 18 179 1.43e-51 172
Msa1197290 AT1G80510.1 46.897 145 73 1 45 189 69 209 1.07e-37 135
Msa1197290 AT3G56200.1 39.490 157 92 1 28 184 3 156 6.87e-31 117
Msa1197290 AT2G40420.1 43.182 132 75 0 48 179 21 152 2.68e-28 110

Find 140 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGGCTGATATGTATT+TGG 0.125877 8_1:+47531956 Msa1197290:three_prime_UTR
TGCTTTATCTCTTGCATATT+TGG 0.149810 8_1:+47533812 Msa1197290:three_prime_UTR
TTCATTATTCTTGTTACTAT+TGG 0.196105 8_1:-47528484 None:intergenic
AAGTTAATTTGAGTTATTTC+TGG 0.209176 8_1:+47532727 Msa1197290:three_prime_UTR
AAAATCTTGAAGATAATCTT+AGG 0.215004 8_1:+47532212 Msa1197290:three_prime_UTR
ATTCTATTCCAAAGCTATTA+AGG 0.226466 8_1:+47532275 Msa1197290:three_prime_UTR
TCCCATAACCATGTTATTCT+TGG 0.230504 8_1:-47533897 None:intergenic
ACCTGCAGCCATGAAGGTTT+TGG 0.234942 8_1:+47528578 Msa1197290:CDS
TTACTGATATGACATCTATT+TGG 0.251297 8_1:+47529809 Msa1197290:three_prime_UTR
CATTAAGCAAATCATCAATA+TGG 0.270742 8_1:+47528344 Msa1197290:exon
CATGATTCCAGCACCAATTA+TGG 0.274336 8_1:-47528550 None:intergenic
GGCTGAATCTTCATTTCGTT+CGG 0.276250 8_1:+47531230 Msa1197290:three_prime_UTR
TGTTCTTTGGGAGCTCCTAT+TGG 0.278858 8_1:+47533683 Msa1197290:three_prime_UTR
TCATTTCGTTCGGGTTCATT+CGG 0.288280 8_1:+47531240 Msa1197290:three_prime_UTR
TACTGACCAAGTTTGCATTA+AGG 0.292369 8_1:+47533756 Msa1197290:three_prime_UTR
GATTCATTAAAATATACTTC+TGG 0.303366 8_1:+47529682 Msa1197290:intron
ATTGCAAACCTTAATAGCTT+TGG 0.307458 8_1:-47532283 None:intergenic
AATCTATCAACAACCATAAT+TGG 0.313246 8_1:+47528537 Msa1197290:CDS
GCGTTTGTCTGTCATTATAA+TGG 0.315829 8_1:+47529865 Msa1197290:three_prime_UTR
CTCTCCCTGTGTTACAGATA+TGG 0.326870 8_1:+47531013 Msa1197290:three_prime_UTR
CATTTCGTTCGGGTTCATTC+GGG 0.328176 8_1:+47531241 Msa1197290:three_prime_UTR
TTGATTCCTTAGGCTGCATT+TGG 0.337063 8_1:+47534027 Msa1197290:three_prime_UTR
TTTGGCGAACACTGGTCAAC+TGG 0.345735 8_1:+47529479 Msa1197290:CDS
TTTGCTTACTCATACCTCTT+TGG 0.351471 8_1:+47528638 Msa1197290:CDS
GTTCTTTGGGAGCTCCTATT+GGG 0.352020 8_1:+47533684 Msa1197290:three_prime_UTR
AGCCAAGAATAACATGGTTA+TGG 0.358530 8_1:+47533895 Msa1197290:three_prime_UTR
TGCTGTTACAGAACCTGTTT+TGG 0.358940 8_1:+47533627 Msa1197290:three_prime_UTR
GGTAGTGAAGTTCTTTCCTT+TGG 0.359701 8_1:+47532038 Msa1197290:three_prime_UTR
ATATTTGACATTGCAATACT+AGG 0.372625 8_1:+47530882 Msa1197290:three_prime_UTR
ATTTGGGAGATGGGGACATT+GGG 0.375772 8_1:+47531973 Msa1197290:three_prime_UTR
GCTGAATCTTCATTTCGTTC+GGG 0.388192 8_1:+47531231 Msa1197290:three_prime_UTR
CCTCTTTGGATATTCTTATG+AGG 0.391118 8_1:+47528652 Msa1197290:CDS
TACAGATATGGAGAATGCTT+TGG 0.395339 8_1:+47531025 Msa1197290:three_prime_UTR
CTGCATTTGGTTTCTTAGAC+AGG 0.396114 8_1:+47534040 Msa1197290:three_prime_UTR
TTTGAATTCTCTTACTAGAA+AGG 0.401712 8_1:+47532150 Msa1197290:three_prime_UTR
ATTAAGCAAATCATCAATAT+GGG 0.402163 8_1:+47528345 Msa1197290:exon
GATGTCATATCAGTAATATT+AGG 0.404138 8_1:-47529802 None:intergenic
GATGTCATGGGATATGCTTT+TGG 0.404414 8_1:+47528708 Msa1197290:CDS
GTTGCTAAGGCTCAATCTTA+TGG 0.408862 8_1:+47528684 Msa1197290:CDS
AGCATTCAAAGCTAAACATA+TGG 0.411361 8_1:+47532367 Msa1197290:three_prime_UTR
CAAACGGTGTAGTTATATCA+TGG 0.413775 8_1:-47534073 None:intergenic
GTTGTCTACATCATCATCAT+TGG 0.414716 8_1:+47528789 Msa1197290:CDS
ACAATTTCATTTGTTCCTGT+TGG 0.416753 8_1:-47528381 None:intergenic
GGTTAATCCCAAAACCTTCA+TGG 0.418451 8_1:-47528586 None:intergenic
CTGTCTGGAACAACTTCATC+TGG 0.420789 8_1:+47529425 Msa1197290:CDS
TTAGTGGCTGATATGTATTT+GGG 0.424441 8_1:+47531957 Msa1197290:three_prime_UTR
GAATCAGCAGCATCATTTGC+TGG 0.424801 8_1:+47528504 Msa1197290:CDS
ACAAACGCTGTCACAAGAAC+TGG 0.426049 8_1:-47529850 None:intergenic
TAGATTGCATTAAGCTATGT+AGG 0.426359 8_1:+47532622 Msa1197290:three_prime_UTR
AGCTGGTAGGTGAGTGTTGT+AGG 0.426569 8_1:+47532009 Msa1197290:three_prime_UTR
AGGCTCCAGAGGAGAATTGA+TGG 0.426769 8_1:-47530988 None:intergenic
ACAGATATGGAGAATGCTTT+GGG 0.431093 8_1:+47531026 Msa1197290:three_prime_UTR
TTGAACTGAATTTAAATCGT+TGG 0.436070 8_1:+47533523 Msa1197290:three_prime_UTR
CTTCATGGTGATAGCTCAAA+AGG 0.440563 8_1:+47531180 Msa1197290:intron
GCCAAGAATAACATGGTTAT+GGG 0.445142 8_1:+47533896 Msa1197290:three_prime_UTR
CATAATTGGTGCTGGAATCA+TGG 0.448019 8_1:+47528551 Msa1197290:CDS
GGTGTACTCGAAGGATGGTT+TGG 0.448523 8_1:+47529461 Msa1197290:CDS
TGAATTTAAATCGTTGGCAT+TGG 0.451936 8_1:+47533529 Msa1197290:three_prime_UTR
CTGATATGTATTTGGGAGAT+GGG 0.454551 8_1:+47531964 Msa1197290:three_prime_UTR
ACATTTGTTAAATTGTTCAA+TGG 0.464540 8_1:+47529754 Msa1197290:three_prime_UTR
CATGATATAACTACACCGTT+TGG 0.467403 8_1:+47534074 Msa1197290:three_prime_UTR
TTCTGGATTAGCAGTGGCTC+TGG 0.468822 8_1:+47529699 Msa1197290:three_prime_UTR
TATTTGGGAGATGGGGACAT+TGG 0.469371 8_1:+47531972 Msa1197290:three_prime_UTR
ACAGGAACAAATGAAATTGT+TGG 0.470396 8_1:+47528384 Msa1197290:CDS
ATTCTCCATATCTGTAACAC+AGG 0.471102 8_1:-47531018 None:intergenic
GGTGAGTGTTGTAGGGAGCC+AGG 0.479460 8_1:+47532017 Msa1197290:three_prime_UTR
AGCTAAACATATGGTTGAGA+AGG 0.482579 8_1:+47532376 Msa1197290:three_prime_UTR
CCCAAAACCTTCATGGCTGC+AGG 0.484131 8_1:-47528579 None:intergenic
GGCTTTACCTGCAGCCATGA+AGG 0.484539 8_1:+47528572 Msa1197290:CDS
CCTCTCCATCAATTCTCCTC+TGG 0.486039 8_1:+47530983 Msa1197290:three_prime_UTR
GCCACAATATGTACATCAAA+CGG 0.494156 8_1:-47531210 None:intergenic
GAAATTCAACATGGTGATGA+TGG 0.494788 8_1:+47528459 Msa1197290:CDS
GAGGTTTAGTAGAGTTGCTA+AGG 0.495918 8_1:+47528671 Msa1197290:CDS
GGGTTACACAACAATCCAAC+AGG 0.496128 8_1:+47528366 Msa1197290:CDS
TCTGTAACACAGGGAGAGAC+AGG 0.499483 8_1:-47531008 None:intergenic
TCAACAACCATAATTGGTGC+TGG 0.499517 8_1:+47528543 Msa1197290:CDS
TCATCGGTTGACCCGTCGAA+TGG 0.503435 8_1:+47533942 Msa1197290:three_prime_UTR
ACCATCGTGATACGTTTCCA+TGG 0.505329 8_1:-47531054 None:intergenic
GCTGAACCTTAATGCAAACT+TGG 0.505474 8_1:-47533762 None:intergenic
ATGGAAGTATAGAGAGTCCT+AGG 0.507580 8_1:+47529773 Msa1197290:three_prime_UTR
TAAAGAGAACTCATCAGTAT+TGG 0.508384 8_1:-47532765 None:intergenic
TCAATCTTATGGTGATGTCA+TGG 0.511948 8_1:+47528695 Msa1197290:CDS
GAATGCTTTGGGACGACCCA+TGG 0.518479 8_1:+47531037 Msa1197290:three_prime_UTR
CGAAGGTGGAGGCATAGCTA+TGG 0.523634 8_1:+47533719 Msa1197290:three_prime_UTR
AAAGAACACCTAAAAGTGGC+TGG 0.523899 8_1:-47533668 None:intergenic
TTGGTTCAGAAAATTCTCAC+TGG 0.525267 8_1:+47533548 Msa1197290:three_prime_UTR
CTTGAGTAAGCTTGCACATG+AGG 0.526253 8_1:+47533855 Msa1197290:three_prime_UTR
AAATCTTGAAGATAATCTTA+GGG 0.527109 8_1:+47532213 Msa1197290:three_prime_UTR
AACAGCGAGGAAACCTCAAC+AGG 0.528001 8_1:+47531077 Msa1197290:three_prime_UTR
TGGAATGGATGCTGATACAA+TGG 0.530865 8_1:+47532909 Msa1197290:three_prime_UTR
TGGGGCAGTGCTACAACAGC+TGG 0.538613 8_1:+47531992 Msa1197290:three_prime_UTR
AAGAAACCAAATGCAGCCTA+AGG 0.538975 8_1:-47534033 None:intergenic
CAATCTTATGGTGATGTCAT+GGG 0.540796 8_1:+47528696 Msa1197290:CDS
TCCCAAAGAACACCTAAAAG+TGG 0.545495 8_1:-47533672 None:intergenic
AAACGGTGTAGTTATATCAT+GGG 0.550695 8_1:-47534072 None:intergenic
AGCAGAACCTTTGATTCCTT+AGG 0.550975 8_1:+47534017 Msa1197290:three_prime_UTR
GATGACGTCTTAAACACCCT+TGG 0.551982 8_1:+47531286 Msa1197290:three_prime_UTR
CTAGCTACCTCTCCATTCGA+CGG 0.553510 8_1:-47533954 None:intergenic
TCGTTGTTACTGACCTGTTG+AGG 0.555451 8_1:-47531090 None:intergenic
GCTGATATGTATTTGGGAGA+TGG 0.558787 8_1:+47531963 Msa1197290:three_prime_UTR
TCAACCGATGATGTCCTCCC+AGG 0.561089 8_1:-47533930 None:intergenic
CAGGGAGAGACAGGCTCCAG+AGG 0.562550 8_1:-47530999 None:intergenic
GCTGGTAGGTGAGTGTTGTA+GGG 0.564780 8_1:+47532010 Msa1197290:three_prime_UTR
TTTCCAGGTGATGTACTGTC+TGG 0.565472 8_1:+47529410 Msa1197290:intron
GCTTCTTATTACAACCCTTG+TGG 0.565549 8_1:+47529514 Msa1197290:CDS
TTGGCGAACACTGGTCAACT+GGG 0.566923 8_1:+47529480 Msa1197290:CDS
TAGCTACCTCTCCATTCGAC+GGG 0.568714 8_1:-47533953 None:intergenic
AAGGATGGTTTGGCGAACAC+TGG 0.574519 8_1:+47529471 Msa1197290:CDS
TCTTTAATGTAACACGTGCA+AGG 0.578898 8_1:+47533982 Msa1197290:three_prime_UTR
CCATCGTGATACGTTTCCAT+GGG 0.579373 8_1:-47531053 None:intergenic
CACTACCTGAATAAAAGCCA+AGG 0.584358 8_1:-47531303 None:intergenic
GAAGGTGGAGGCATAGCTAT+GGG 0.584519 8_1:+47533720 Msa1197290:three_prime_UTR
ACTTCGGTGTACTCGAAGGA+TGG 0.584836 8_1:+47529456 Msa1197290:CDS
TTTGGGAGATGGGGACATTG+GGG 0.585463 8_1:+47531974 Msa1197290:three_prime_UTR
CCTCATAAGAATATCCAAAG+AGG 0.590977 8_1:-47528652 None:intergenic
AATGCAGCCTAAGGAATCAA+AGG 0.595599 8_1:-47534024 None:intergenic
GTAATATTAGGAAGCAACCT+AGG 0.599021 8_1:-47529790 None:intergenic
AGGTATGAGTAAGCAAAGCA+AGG 0.602143 8_1:-47528632 None:intergenic
TATGATTGAAGCAATACCAA+TGG 0.605130 8_1:-47528607 None:intergenic
TCCGTTTGATGTACATATTG+TGG 0.618005 8_1:+47531209 Msa1197290:three_prime_UTR
GGTTGACCCGTCGAATGGAG+AGG 0.621998 8_1:+47533947 Msa1197290:three_prime_UTR
AAGGAAAGAACTTCACTACC+TGG 0.623542 8_1:-47532035 None:intergenic
GTAACCTGGGAGGACATCAT+CGG 0.631772 8_1:+47533926 Msa1197290:three_prime_UTR
CATCACTTCGGTGTACTCGA+AGG 0.640348 8_1:+47529452 Msa1197290:CDS
TGATATGTATTTGGGAGATG+GGG 0.641950 8_1:+47531965 Msa1197290:three_prime_UTR
CCAGAGGAGAATTGATGGAG+AGG 0.645914 8_1:-47530983 None:intergenic
ATATACTTCTGGATTAGCAG+TGG 0.646775 8_1:+47529693 Msa1197290:three_prime_UTR
AAAGCCTGTATCTAAAATCG+AGG 0.656651 8_1:+47532567 Msa1197290:three_prime_UTR
TTAAGCAAATCATCAATATG+GGG 0.658572 8_1:+47528346 Msa1197290:exon
TCATCTGGAAGTCATCACTT+CGG 0.665883 8_1:+47529440 Msa1197290:CDS
GAAAGCAGCCAAGAATAACA+TGG 0.671551 8_1:+47533889 Msa1197290:three_prime_UTR
TCGAATGGAGAGGTAGCTAG+AGG 0.673100 8_1:+47533957 Msa1197290:three_prime_UTR
GCAGTGCTACAACAGCTGGT+AGG 0.681742 8_1:+47531996 Msa1197290:three_prime_UTR
ATTGAAGTTGAAATTCAACA+TGG 0.685990 8_1:+47528450 Msa1197290:CDS
TTCTCCATATCTGTAACACA+GGG 0.686159 8_1:-47531017 None:intergenic
ACTACCTGAATAAAAGCCAA+GGG 0.689407 8_1:-47531302 None:intergenic
CCCATGGAAACGTATCACGA+TGG 0.699881 8_1:+47531053 Msa1197290:three_prime_UTR
CAATTATTGAGAGATTCCAA+AGG 0.700592 8_1:-47532054 None:intergenic
TAATGGAGCAAATACCACAA+GGG 0.746718 8_1:-47529528 None:intergenic
GTATCACGATGGTAACAGCG+AGG 0.797767 8_1:+47531064 Msa1197290:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATATTTATTTGATAAAT+AGG + chr8_1:47528859-47528878 Msa1197290:intron 10.0%
!! AACAAAATAAAAAAACAATA+CGG - chr8_1:47529651-47529670 None:intergenic 10.0%
!! TACAAAATAAAAAATTGAAA+AGG - chr8_1:47532846-47532865 None:intergenic 10.0%
!!! TTCAATTTATCCAATTTTTA+AGG - chr8_1:47529373-47529392 None:intergenic 15.0%
!!! ATTCTTTAGTTTAACAATAA+GGG - chr8_1:47529954-47529973 None:intergenic 15.0%
!!! AATTCTTTAGTTTAACAATA+AGG - chr8_1:47529955-47529974 None:intergenic 15.0%
!! TAATATTGTAAATGTATTGT+TGG + chr8_1:47531396-47531415 Msa1197290:intron 15.0%
!! AATATTGTAAATGTATTGTT+GGG + chr8_1:47531397-47531416 Msa1197290:intron 15.0%
!!! TTTAAATTATCTCTCTTTTT+TGG + chr8_1:47531663-47531682 Msa1197290:intron 15.0%
!!! ATTTATTTAAAAAGCTTGTT+GGG - chr8_1:47532603-47532622 None:intergenic 15.0%
!! TATTTATTTAAAAAGCTTGT+TGG - chr8_1:47532604-47532623 None:intergenic 15.0%
!! TACAAAATAAAAAATAGAAG+AGG - chr8_1:47532693-47532712 None:intergenic 15.0%
!!! TTTTAGAGATGATATTTTTT+AGG - chr8_1:47533373-47533392 None:intergenic 15.0%
!! TAAAAAATATCATCTCTAAA+AGG + chr8_1:47533372-47533391 Msa1197290:intron 15.0%
!!! AAAAAATATCATCTCTAAAA+GGG + chr8_1:47533373-47533392 Msa1197290:intron 15.0%
!! ATTAAGCAAATCATCAATAT+GGG + chr8_1:47528345-47528364 Msa1197290:exon 20.0%
!! TTCATTATTCTTGTTACTAT+TGG - chr8_1:47528487-47528506 None:intergenic 20.0%
!! TGTAAAATGTATTATACAGT+CGG + chr8_1:47528968-47528987 Msa1197290:intron 20.0%
!! ATAACATTTCTGTAAAATGA+GGG - chr8_1:47529213-47529232 None:intergenic 20.0%
!! AATAACATTTCTGTAAAATG+AGG - chr8_1:47529214-47529233 None:intergenic 20.0%
!!! TTGGATAAATTGAATGTTTT+AGG + chr8_1:47529379-47529398 Msa1197290:intron 20.0%
!! GATTCATTAAAATATACTTC+TGG + chr8_1:47529682-47529701 Msa1197290:intron 20.0%
!!! ACATTTGTTAAATTGTTCAA+TGG + chr8_1:47529754-47529773 Msa1197290:three_prime_UTR 20.0%
!!! ATTTGATTTTGATACACAAT+CGG + chr8_1:47529972-47529991 Msa1197290:intron 20.0%
!!! TATGACTTTTATCATAACTA+TGG - chr8_1:47530031-47530050 None:intergenic 20.0%
!! TGTAAACAATCTTTAACTAA+CGG + chr8_1:47530087-47530106 Msa1197290:intron 20.0%
!! GCAATTTCAACAAAAATTTA+AGG - chr8_1:47530784-47530803 None:intergenic 20.0%
!! AAATGAATGAAACTAAATCA+TGG - chr8_1:47531853-47531872 None:intergenic 20.0%
!!! TCATATTATGTTTTTACTTG+AGG + chr8_1:47532116-47532135 Msa1197290:three_prime_UTR 20.0%
!! AAAATCTTGAAGATAATCTT+AGG + chr8_1:47532212-47532231 Msa1197290:three_prime_UTR 20.0%
!! AAATCTTGAAGATAATCTTA+GGG + chr8_1:47532213-47532232 Msa1197290:three_prime_UTR 20.0%
!!! AAGTTAATTTGAGTTATTTC+TGG + chr8_1:47532727-47532746 Msa1197290:three_prime_UTR 20.0%
!!! TAAGTTTATTTGAGTTTTTC+TGG + chr8_1:47532882-47532901 Msa1197290:three_prime_UTR 20.0%
!! AATCTATCTTAATTCTCATT+AGG - chr8_1:47532974-47532993 None:intergenic 20.0%
!! TAATGAGAATTAAGATAGAT+TGG + chr8_1:47532973-47532992 Msa1197290:intron 20.0%
!! GATGTCTATATTATGTATAA+AGG - chr8_1:47533164-47533183 None:intergenic 20.0%
!! ATAACATTGAAAAATGTTAG+CGG - chr8_1:47533238-47533257 None:intergenic 20.0%
!!! TTCTATTTATAGATTTGTTG+CGG + chr8_1:47533469-47533488 Msa1197290:intron 20.0%
!!! ATTTTCATATAATCACTTAG+AGG + chr8_1:47533582-47533601 Msa1197290:three_prime_UTR 20.0%
! CATTAAGCAAATCATCAATA+TGG + chr8_1:47528344-47528363 Msa1197290:exon 25.0%
! TTAAGCAAATCATCAATATG+GGG + chr8_1:47528346-47528365 Msa1197290:exon 25.0%
!! TTCAATTTTCTCATCTGTTT+TGG - chr8_1:47528436-47528455 None:intergenic 25.0%
! ATTGAAGTTGAAATTCAACA+TGG + chr8_1:47528450-47528469 Msa1197290:CDS 25.0%
! AATCTATCAACAACCATAAT+TGG + chr8_1:47528537-47528556 Msa1197290:CDS 25.0%
!! ACCAAGTTAAAATTTGAGTT+GGG - chr8_1:47529113-47529132 None:intergenic 25.0%
! TACCAAGTTAAAATTTGAGT+TGG - chr8_1:47529114-47529133 None:intergenic 25.0%
! ATGCAAAATTTCAGATTCAT+AGG - chr8_1:47529183-47529202 None:intergenic 25.0%
!! TCATACACACATTTTCATAT+TGG + chr8_1:47529267-47529286 Msa1197290:intron 25.0%
!! TTTTCATATTGGATCCAAAT+TGG + chr8_1:47529278-47529297 Msa1197290:intron 25.0%
! TGCTTACGAGTATTTATTTA+TGG + chr8_1:47529304-47529323 Msa1197290:intron 25.0%
! ATTTGTCATGCCTTAAAAAT+TGG + chr8_1:47529360-47529379 Msa1197290:intron 25.0%
! AGTACTACATTTACTAAATG+AGG - chr8_1:47529617-47529636 None:intergenic 25.0%
!!! GTATATTTTAATGAATCTGC+AGG - chr8_1:47529679-47529698 None:intergenic 25.0%
! GATGTCATATCAGTAATATT+AGG - chr8_1:47529805-47529824 None:intergenic 25.0%
! TTACTGATATGACATCTATT+TGG + chr8_1:47529809-47529828 Msa1197290:three_prime_UTR 25.0%
! ATATGACGATTATGATTGAT+AGG + chr8_1:47530061-47530080 Msa1197290:intron 25.0%
! AAGATACAATTCACACAAAT+TGG + chr8_1:47530198-47530217 Msa1197290:intron 25.0%
!! GATAAAAGAAAGCTCTAATA+TGG - chr8_1:47530305-47530324 None:intergenic 25.0%
!! ATTAGAGCTTTCTTTTATCA+AGG + chr8_1:47530306-47530325 Msa1197290:intron 25.0%
! ATCAACATAGATTGATCTAA+TGG - chr8_1:47530432-47530451 None:intergenic 25.0%
! ACTAATTTCAATTCATAGTG+TGG - chr8_1:47530457-47530476 None:intergenic 25.0%
! ACATGAAGATTGAATGAATT+TGG - chr8_1:47530737-47530756 None:intergenic 25.0%
! AAATTCATTCAATCTTCATG+TGG + chr8_1:47530736-47530755 Msa1197290:intron 25.0%
!! AAATTTAAGGTTGAAGTTGT+CGG - chr8_1:47530771-47530790 None:intergenic 25.0%
! ATATTTGACATTGCAATACT+AGG + chr8_1:47530882-47530901 Msa1197290:three_prime_UTR 25.0%
! ATATTATACAAACACCTTGT+GGG - chr8_1:47531431-47531450 None:intergenic 25.0%
! AATATTATACAAACACCTTG+TGG - chr8_1:47531432-47531451 None:intergenic 25.0%
! TTGTATAATATTCTGACTCA+AGG + chr8_1:47531440-47531459 Msa1197290:intron 25.0%
!!! AAAACAACAAAACTTGTTGT+GGG - chr8_1:47531630-47531649 None:intergenic 25.0%
!!! AAATTATCTCTCTTTTTTGG+TGG + chr8_1:47531666-47531685 Msa1197290:intron 25.0%
!! GATTCTTTTTAGATTCTTAG+TGG + chr8_1:47531941-47531960 Msa1197290:intron 25.0%
! TTTGAATTCTCTTACTAGAA+AGG + chr8_1:47532150-47532169 Msa1197290:three_prime_UTR 25.0%
! ATTCTATTCCAAAGCTATTA+AGG + chr8_1:47532275-47532294 Msa1197290:three_prime_UTR 25.0%
!!! TGGCATGTATTTTTAAGATA+AGG + chr8_1:47533125-47533144 Msa1197290:intron 25.0%
!! TTTAAGATAAGGCTATACAA+TGG + chr8_1:47533136-47533155 Msa1197290:intron 25.0%
!! AAATTGATTGAAGACTTTTC+TGG + chr8_1:47533300-47533319 Msa1197290:intron 25.0%
!!! TAGAGATGATATTTTTTAGG+TGG - chr8_1:47533370-47533389 None:intergenic 25.0%
! TTGAACTGAATTTAAATCGT+TGG + chr8_1:47533523-47533542 Msa1197290:three_prime_UTR 25.0%
!!! ATAATCACTTAGAGGTTTTT+TGG + chr8_1:47533590-47533609 Msa1197290:three_prime_UTR 25.0%
!!! TAATCACTTAGAGGTTTTTT+GGG + chr8_1:47533591-47533610 Msa1197290:three_prime_UTR 25.0%
ACAATTTCATTTGTTCCTGT+TGG - chr8_1:47528384-47528403 None:intergenic 30.0%
ACAGGAACAAATGAAATTGT+TGG + chr8_1:47528384-47528403 Msa1197290:CDS 30.0%
TATGATTGAAGCAATACCAA+TGG - chr8_1:47528610-47528629 None:intergenic 30.0%
! TCTGTTCTTTTCAACAACTT+TGG + chr8_1:47528759-47528778 Msa1197290:CDS 30.0%
!! ACAAAATTGACTTGTGATTG+AGG - chr8_1:47529076-47529095 None:intergenic 30.0%
! TCAATCACAAGTCAATTTTG+TGG + chr8_1:47529075-47529094 Msa1197290:intron 30.0%
! TCAATTTTGTGGATTTGAGT+TGG + chr8_1:47529086-47529105 Msa1197290:intron 30.0%
!! CAATTTTGTGGATTTGAGTT+GGG + chr8_1:47529087-47529106 Msa1197290:intron 30.0%
AATGTGTAAATATGCTAAGC+CGG + chr8_1:47529235-47529254 Msa1197290:intron 30.0%
! TGAAATGAAAGTACACATTG+AGG - chr8_1:47529902-47529921 None:intergenic 30.0%
AAAACATCTCTTTGCTTTGA+TGG + chr8_1:47530159-47530178 Msa1197290:intron 30.0%
!! TTCTGTACTTTGAAGTTACA+AGG + chr8_1:47530230-47530249 Msa1197290:intron 30.0%
AAATCATTAGGAATTAGGGT+TGG - chr8_1:47530390-47530409 None:intergenic 30.0%
! ACCCTAATTCCTAATGATTT+TGG + chr8_1:47530390-47530409 Msa1197290:intron 30.0%
GCCAAAATCATTAGGAATTA+GGG - chr8_1:47530394-47530413 None:intergenic 30.0%
AGCCAAAATCATTAGGAATT+AGG - chr8_1:47530395-47530414 None:intergenic 30.0%
! AATTTGGAGCCAAAATCATT+AGG - chr8_1:47530402-47530421 None:intergenic 30.0%
TGAATGAATTTGGAGAGAAT+AGG - chr8_1:47530727-47530746 None:intergenic 30.0%
TAGCACACAAACAAACATTA+AGG - chr8_1:47531527-47531546 None:intergenic 30.0%
!! CAAAACAACAAAACTTGTTG+TGG - chr8_1:47531631-47531650 None:intergenic 30.0%
!!! TCTTTTTTGGTGGTCTATAA+TGG + chr8_1:47531676-47531695 Msa1197290:intron 30.0%
ATGCACTTATCGATGTTTAT+GGG + chr8_1:47531703-47531722 Msa1197290:intron 30.0%
ATACTGTACAAAATATGCCA+AGG - chr8_1:47531760-47531779 None:intergenic 30.0%
GCTTCTTAGTTGTAAAGAAT+TGG + chr8_1:47531902-47531921 Msa1197290:intron 30.0%
TTAGTGGCTGATATGTATTT+GGG + chr8_1:47531957-47531976 Msa1197290:three_prime_UTR 30.0%
CAATTATTGAGAGATTCCAA+AGG - chr8_1:47532057-47532076 None:intergenic 30.0%
ATTGCAAACCTTAATAGCTT+TGG - chr8_1:47532286-47532305 None:intergenic 30.0%
AGCATTCAAAGCTAAACATA+TGG + chr8_1:47532367-47532386 Msa1197290:three_prime_UTR 30.0%
TAGATTGCATTAAGCTATGT+AGG + chr8_1:47532622-47532641 Msa1197290:three_prime_UTR 30.0%
!!! GTTATTTCTGGTCTTTTGAA+TGG + chr8_1:47532739-47532758 Msa1197290:three_prime_UTR 30.0%
TAAAGAGAACTCATCAGTAT+TGG - chr8_1:47532768-47532787 None:intergenic 30.0%
!! ATTTGAGTTTTTCTGGTCTT+TGG + chr8_1:47532889-47532908 Msa1197290:three_prime_UTR 30.0%
! AAACTTCCCTTAATTGCTTT+TGG - chr8_1:47533038-47533057 None:intergenic 30.0%
GTTTCAAAGTTGTTTGTCTT+TGG + chr8_1:47533070-47533089 Msa1197290:intron 30.0%
CTACAGTATATTCTAACAAG+TGG + chr8_1:47533105-47533124 Msa1197290:intron 30.0%
ATAAAAAGCCTAAAGGAGTA+TGG - chr8_1:47533213-47533232 None:intergenic 30.0%
TGAATTTAAATCGTTGGCAT+TGG + chr8_1:47533529-47533548 Msa1197290:three_prime_UTR 30.0%
!!! AATCACTTAGAGGTTTTTTG+GGG + chr8_1:47533592-47533611 Msa1197290:three_prime_UTR 30.0%
TCAAGAAAAAACACCAAAAC+AGG - chr8_1:47533643-47533662 None:intergenic 30.0%
TGCTTTATCTCTTGCATATT+TGG + chr8_1:47533812-47533831 Msa1197290:three_prime_UTR 30.0%
TAACATGGTTATGGGAAAAA+TGG + chr8_1:47533904-47533923 Msa1197290:three_prime_UTR 30.0%
AAACGGTGTAGTTATATCAT+GGG - chr8_1:47534075-47534094 None:intergenic 30.0%
!!! TCTGTTTTGGTTTGTAGCAA+TGG - chr8_1:47528423-47528442 None:intergenic 35.0%
! GAAATTCAACATGGTGATGA+TGG + chr8_1:47528459-47528478 Msa1197290:CDS 35.0%
!!! AAGGTTTTGGGATTAACCAT+TGG + chr8_1:47528591-47528610 Msa1197290:CDS 35.0%
TTTGCTTACTCATACCTCTT+TGG + chr8_1:47528638-47528657 Msa1197290:CDS 35.0%
CCTCATAAGAATATCCAAAG+AGG - chr8_1:47528655-47528674 None:intergenic 35.0%
CCTCTTTGGATATTCTTATG+AGG + chr8_1:47528652-47528671 Msa1197290:CDS 35.0%
! TCAATCTTATGGTGATGTCA+TGG + chr8_1:47528695-47528714 Msa1197290:CDS 35.0%
! CAATCTTATGGTGATGTCAT+GGG + chr8_1:47528696-47528715 Msa1197290:CDS 35.0%
!!! TTTTGGAAGTGTTGGTAGAT+TGG + chr8_1:47528725-47528744 Msa1197290:CDS 35.0%
GTTGTCTACATCATCATCAT+TGG + chr8_1:47528789-47528808 Msa1197290:CDS 35.0%
ATGACCTGCAAATAAGTTTG+TGG + chr8_1:47529042-47529061 Msa1197290:intron 35.0%
TCTTCCACAAACTTATTTGC+AGG - chr8_1:47529049-47529068 None:intergenic 35.0%
!!! GCCCAACTCAAATTTTAACT+TGG + chr8_1:47529109-47529128 Msa1197290:intron 35.0%
TTGGTATCAGAGCTTATTCA+GGG + chr8_1:47529128-47529147 Msa1197290:intron 35.0%
! TTTTAGGCTACTTGATTTCC+AGG + chr8_1:47529395-47529414 Msa1197290:intron 35.0%
TAATGGAGCAAATACCACAA+GGG - chr8_1:47529531-47529550 None:intergenic 35.0%
TTGTGGTATTTGCTCCATTA+GGG + chr8_1:47529531-47529550 Msa1197290:intron 35.0%
ATCCTCTTAAAGAACCCTAA+TGG - chr8_1:47529548-47529567 None:intergenic 35.0%
! TTAGGGTTCTTTAAGAGGAT+AGG + chr8_1:47529548-47529567 Msa1197290:intron 35.0%
!! ATATACTTCTGGATTAGCAG+TGG + chr8_1:47529693-47529712 Msa1197290:three_prime_UTR 35.0%
! GTTTTTCTTGTCATAACTGC+AGG + chr8_1:47529727-47529746 Msa1197290:three_prime_UTR 35.0%
GTAATATTAGGAAGCAACCT+AGG - chr8_1:47529793-47529812 None:intergenic 35.0%
GCGTTTGTCTGTCATTATAA+TGG + chr8_1:47529865-47529884 Msa1197290:three_prime_UTR 35.0%
! AGCTTTCTTTTATCAAGGCT+AGG + chr8_1:47530311-47530330 Msa1197290:intron 35.0%
!!! ATTTTGGCTCCAAATTGTTC+TGG + chr8_1:47530406-47530425 Msa1197290:intron 35.0%
ATCTAATGGCCAGAACAATT+TGG - chr8_1:47530418-47530437 None:intergenic 35.0%
CAATATGCATTGGAATTGAG+CGG - chr8_1:47530534-47530553 None:intergenic 35.0%
GCTCAATTCCAATGCATATT+GGG + chr8_1:47530533-47530552 Msa1197290:intron 35.0%
AATTCTCACCCAATATGCAT+TGG - chr8_1:47530544-47530563 None:intergenic 35.0%
TTCTCCATATCTGTAACACA+GGG - chr8_1:47531020-47531039 None:intergenic 35.0%
ATTCTCCATATCTGTAACAC+AGG - chr8_1:47531021-47531040 None:intergenic 35.0%
TACAGATATGGAGAATGCTT+TGG + chr8_1:47531025-47531044 Msa1197290:three_prime_UTR 35.0%
ACAGATATGGAGAATGCTTT+GGG + chr8_1:47531026-47531045 Msa1197290:three_prime_UTR 35.0%
TCCGTTTGATGTACATATTG+TGG + chr8_1:47531209-47531228 Msa1197290:three_prime_UTR 35.0%
GCCACAATATGTACATCAAA+CGG - chr8_1:47531213-47531232 None:intergenic 35.0%
! CATTCGGGAATGTGAATTTT+CGG + chr8_1:47531256-47531275 Msa1197290:three_prime_UTR 35.0%
ACTACCTGAATAAAAGCCAA+GGG - chr8_1:47531305-47531324 None:intergenic 35.0%
!! TTTTTGGTGGTCTATAATGG+AGG + chr8_1:47531679-47531698 Msa1197290:intron 35.0%
!! TTTTGGTGGTCTATAATGGA+GGG + chr8_1:47531680-47531699 Msa1197290:intron 35.0%
GATGCACTTATCGATGTTTA+TGG + chr8_1:47531702-47531721 Msa1197290:intron 35.0%
GAAGAGACTTATGGTATAAG+TGG - chr8_1:47531738-47531757 None:intergenic 35.0%
TATACCATAAGTCTCTTCCT+TGG + chr8_1:47531740-47531759 Msa1197290:intron 35.0%
CTTAGTGGCTGATATGTATT+TGG + chr8_1:47531956-47531975 Msa1197290:three_prime_UTR 35.0%
CTGATATGTATTTGGGAGAT+GGG + chr8_1:47531964-47531983 Msa1197290:three_prime_UTR 35.0%
TGATATGTATTTGGGAGATG+GGG + chr8_1:47531965-47531984 Msa1197290:three_prime_UTR 35.0%
AGCTAAACATATGGTTGAGA+AGG + chr8_1:47532376-47532395 Msa1197290:three_prime_UTR 35.0%
! AAAGCCTGTATCTAAAATCG+AGG + chr8_1:47532567-47532586 Msa1197290:three_prime_UTR 35.0%
! AGTTCCTCGATTTTAGATAC+AGG - chr8_1:47532574-47532593 None:intergenic 35.0%
!! AGTTTTTCTGGTCTTTGGAA+TGG + chr8_1:47532894-47532913 Msa1197290:three_prime_UTR 35.0%
TAGTTCCTTTGCGAAAGTTA+TGG + chr8_1:47533010-47533029 Msa1197290:intron 35.0%
TATGGCACCAAAAGCAATTA+AGG + chr8_1:47533028-47533047 Msa1197290:intron 35.0%
ATGGCACCAAAAGCAATTAA+GGG + chr8_1:47533029-47533048 Msa1197290:intron 35.0%
TCATTGAACCATACTCCTTT+AGG + chr8_1:47533202-47533221 Msa1197290:intron 35.0%
TTGGTTCAGAAAATTCTCAC+TGG + chr8_1:47533548-47533567 Msa1197290:three_prime_UTR 35.0%
TACTGACCAAGTTTGCATTA+AGG + chr8_1:47533756-47533775 Msa1197290:three_prime_UTR 35.0%
AGCCAAGAATAACATGGTTA+TGG + chr8_1:47533895-47533914 Msa1197290:three_prime_UTR 35.0%
GCCAAGAATAACATGGTTAT+GGG + chr8_1:47533896-47533915 Msa1197290:three_prime_UTR 35.0%
TCCCATAACCATGTTATTCT+TGG - chr8_1:47533900-47533919 None:intergenic 35.0%
TTATGGGAAAAATGGTAACC+TGG + chr8_1:47533912-47533931 Msa1197290:three_prime_UTR 35.0%
TATGGGAAAAATGGTAACCT+GGG + chr8_1:47533913-47533932 Msa1197290:three_prime_UTR 35.0%
TCTTTAATGTAACACGTGCA+AGG + chr8_1:47533982-47534001 Msa1197290:three_prime_UTR 35.0%
TCAACAACCATAATTGGTGC+TGG + chr8_1:47528543-47528562 Msa1197290:CDS 40.0%
CATGATTCCAGCACCAATTA+TGG - chr8_1:47528553-47528572 None:intergenic 40.0%
!! CATAATTGGTGCTGGAATCA+TGG + chr8_1:47528551-47528570 Msa1197290:CDS 40.0%
GGTTAATCCCAAAACCTTCA+TGG - chr8_1:47528589-47528608 None:intergenic 40.0%
AGGTATGAGTAAGCAAAGCA+AGG - chr8_1:47528635-47528654 None:intergenic 40.0%
GAGGTTTAGTAGAGTTGCTA+AGG + chr8_1:47528671-47528690 Msa1197290:CDS 40.0%
GTTGCTAAGGCTCAATCTTA+TGG + chr8_1:47528684-47528703 Msa1197290:CDS 40.0%
! GATGTCATGGGATATGCTTT+TGG + chr8_1:47528708-47528727 Msa1197290:CDS 40.0%
!! GGATATGCTTTTGGAAGTGT+TGG + chr8_1:47528717-47528736 Msa1197290:CDS 40.0%
CTTGGTATCAGAGCTTATTC+AGG + chr8_1:47529127-47529146 Msa1197290:intron 40.0%
GTGTGTATGACTTAGCATAC+CGG - chr8_1:47529257-47529276 None:intergenic 40.0%
ACTCGTAAGCAAGACCAATT+TGG - chr8_1:47529295-47529314 None:intergenic 40.0%
TCATCTGGAAGTCATCACTT+CGG + chr8_1:47529440-47529459 Msa1197290:CDS 40.0%
GCTTCTTATTACAACCCTTG+TGG + chr8_1:47529514-47529533 Msa1197290:CDS 40.0%
CTAATGGAGCAAATACCACA+AGG - chr8_1:47529532-47529551 None:intergenic 40.0%
CTTGTGGTATTTGCTCCATT+AGG + chr8_1:47529530-47529549 Msa1197290:intron 40.0%
CTCCATTAGGGTTCTTTAAG+AGG + chr8_1:47529543-47529562 Msa1197290:intron 40.0%
! ATGGAAGTATAGAGAGTCCT+AGG + chr8_1:47529773-47529792 Msa1197290:three_prime_UTR 40.0%
! GCAAAGAGATGTTTTGCTGA+TGG - chr8_1:47530154-47530173 None:intergenic 40.0%
CTAATATGGCCTCGTGTTAA+CGG - chr8_1:47530291-47530310 None:intergenic 40.0%
CGCTCAATTCCAATGCATAT+TGG + chr8_1:47530532-47530551 Msa1197290:intron 40.0%
TATCTTGATTGAATCGCGTG+TGG + chr8_1:47531149-47531168 Msa1197290:intron 40.0%
CTTCATGGTGATAGCTCAAA+AGG + chr8_1:47531180-47531199 Msa1197290:intron 40.0%
GGCTGAATCTTCATTTCGTT+CGG + chr8_1:47531230-47531249 Msa1197290:three_prime_UTR 40.0%
GCTGAATCTTCATTTCGTTC+GGG + chr8_1:47531231-47531250 Msa1197290:three_prime_UTR 40.0%
! TCATTTCGTTCGGGTTCATT+CGG + chr8_1:47531240-47531259 Msa1197290:three_prime_UTR 40.0%
!! AACACCCTTGGCTTTTATTC+AGG + chr8_1:47531298-47531317 Msa1197290:three_prime_UTR 40.0%
CACTACCTGAATAAAAGCCA+AGG - chr8_1:47531306-47531325 None:intergenic 40.0%
!! CTTGGCTTTTATTCAGGTAG+TGG + chr8_1:47531304-47531323 Msa1197290:intron 40.0%
TATGCCAAGGAAGAGACTTA+TGG - chr8_1:47531747-47531766 None:intergenic 40.0%
ACTAAATCATGGCGTAGTCA+TGG - chr8_1:47531842-47531861 None:intergenic 40.0%
GCTGATATGTATTTGGGAGA+TGG + chr8_1:47531963-47531982 Msa1197290:three_prime_UTR 40.0%
AAGGAAAGAACTTCACTACC+TGG - chr8_1:47532038-47532057 None:intergenic 40.0%
GGTAGTGAAGTTCTTTCCTT+TGG + chr8_1:47532038-47532057 Msa1197290:three_prime_UTR 40.0%
TGGAATGGATGCTGATACAA+TGG + chr8_1:47532909-47532928 Msa1197290:three_prime_UTR 40.0%
AGCGGCTATAAAAAGCCTAA+AGG - chr8_1:47533220-47533239 None:intergenic 40.0%
GGTTCTGTAACAGCAAAAAC+AGG - chr8_1:47533622-47533641 None:intergenic 40.0%
! TGCTGTTACAGAACCTGTTT+TGG + chr8_1:47533627-47533646 Msa1197290:three_prime_UTR 40.0%
!!! TGACTATTCCAGCCACTTTT+AGG + chr8_1:47533660-47533679 Msa1197290:three_prime_UTR 40.0%
AAAGAACACCTAAAAGTGGC+TGG - chr8_1:47533671-47533690 None:intergenic 40.0%
!!! AGCCACTTTTAGGTGTTCTT+TGG + chr8_1:47533670-47533689 Msa1197290:three_prime_UTR 40.0%
!!! GCCACTTTTAGGTGTTCTTT+GGG + chr8_1:47533671-47533690 Msa1197290:three_prime_UTR 40.0%
TCCCAAAGAACACCTAAAAG+TGG - chr8_1:47533675-47533694 None:intergenic 40.0%
CGAAAAACACAACACCCAAT+AGG - chr8_1:47533701-47533720 None:intergenic 40.0%
!! TTGGGTGTTGTGTTTTTCGA+AGG + chr8_1:47533702-47533721 Msa1197290:three_prime_UTR 40.0%
GCTGAACCTTAATGCAAACT+TGG - chr8_1:47533765-47533784 None:intergenic 40.0%
GAAAGCAGCCAAGAATAACA+TGG + chr8_1:47533889-47533908 Msa1197290:three_prime_UTR 40.0%
! TAACACGTGCAAGGATTTTG+AGG + chr8_1:47533991-47534010 Msa1197290:three_prime_UTR 40.0%
AGCAGAACCTTTGATTCCTT+AGG + chr8_1:47534017-47534036 Msa1197290:three_prime_UTR 40.0%
AATGCAGCCTAAGGAATCAA+AGG - chr8_1:47534027-47534046 None:intergenic 40.0%
TTGATTCCTTAGGCTGCATT+TGG + chr8_1:47534027-47534046 Msa1197290:three_prime_UTR 40.0%
AAGAAACCAAATGCAGCCTA+AGG - chr8_1:47534036-47534055 None:intergenic 40.0%
! CTGCATTTGGTTTCTTAGAC+AGG + chr8_1:47534040-47534059 Msa1197290:three_prime_UTR 40.0%
GGGTTACACAACAATCCAAC+AGG + chr8_1:47528366-47528385 Msa1197290:CDS 45.0%
GAATCAGCAGCATCATTTGC+TGG + chr8_1:47528504-47528523 Msa1197290:CDS 45.0%
TTTCCAGGTGATGTACTGTC+TGG + chr8_1:47529410-47529429 Msa1197290:intron 45.0%
! CTGTCTGGAACAACTTCATC+TGG + chr8_1:47529425-47529444 Msa1197290:CDS 45.0%
ACAAACGCTGTCACAAGAAC+TGG - chr8_1:47529853-47529872 None:intergenic 45.0%
TTGAGCGGTGTGTAGTTGTT+TGG - chr8_1:47530519-47530538 None:intergenic 45.0%
GAAATCAACCGAGATCACGA+CGG - chr8_1:47530647-47530666 None:intergenic 45.0%
ACCTGGTGTGAAGAGAGAAA+CGG - chr8_1:47530671-47530690 None:intergenic 45.0%
AAAGAGAGAGAGATTCGACC+TGG - chr8_1:47530688-47530707 None:intergenic 45.0%
CTCTCCCTGTGTTACAGATA+TGG + chr8_1:47531013-47531032 Msa1197290:three_prime_UTR 45.0%
CCATCGTGATACGTTTCCAT+GGG - chr8_1:47531056-47531075 None:intergenic 45.0%
ACCATCGTGATACGTTTCCA+TGG - chr8_1:47531057-47531076 None:intergenic 45.0%
TCGTTGTTACTGACCTGTTG+AGG - chr8_1:47531093-47531112 None:intergenic 45.0%
CAACAGGTCAGTAACAACGA+AGG + chr8_1:47531093-47531112 Msa1197290:intron 45.0%
CAGCAGAAAAAGTTGCGCTA+TGG - chr8_1:47531121-47531140 None:intergenic 45.0%
CGTGTGGTTAATGCTCTTCA+TGG + chr8_1:47531165-47531184 Msa1197290:intron 45.0%
! CATTTCGTTCGGGTTCATTC+GGG + chr8_1:47531241-47531260 Msa1197290:three_prime_UTR 45.0%
GATGACGTCTTAAACACCCT+TGG + chr8_1:47531286-47531305 Msa1197290:three_prime_UTR 45.0%
TATTTGGGAGATGGGGACAT+TGG + chr8_1:47531972-47531991 Msa1197290:three_prime_UTR 45.0%
ATTTGGGAGATGGGGACATT+GGG + chr8_1:47531973-47531992 Msa1197290:three_prime_UTR 45.0%
!! TGGTGCCATAACTTTCGCAA+AGG - chr8_1:47533018-47533037 None:intergenic 45.0%
! TGTTCTTTGGGAGCTCCTAT+TGG + chr8_1:47533683-47533702 Msa1197290:three_prime_UTR 45.0%
! GTTCTTTGGGAGCTCCTATT+GGG + chr8_1:47533684-47533703 Msa1197290:three_prime_UTR 45.0%
!! GGTGTTGTGTTTTTCGAAGG+TGG + chr8_1:47533705-47533724 Msa1197290:three_prime_UTR 45.0%
!! GTTGTGTTTTTCGAAGGTGG+AGG + chr8_1:47533708-47533727 Msa1197290:three_prime_UTR 45.0%
CTTGAGTAAGCTTGCACATG+AGG + chr8_1:47533855-47533874 Msa1197290:three_prime_UTR 45.0%
! ACCTGCAGCCATGAAGGTTT+TGG + chr8_1:47528578-47528597 Msa1197290:CDS 50.0%
! CCTGCAGCCATGAAGGTTTT+GGG + chr8_1:47528579-47528598 Msa1197290:CDS 50.0%
GTTCCAGACAGTACATCACC+TGG - chr8_1:47529416-47529435 None:intergenic 50.0%
! CATCACTTCGGTGTACTCGA+AGG + chr8_1:47529452-47529471 Msa1197290:CDS 50.0%
! ACTTCGGTGTACTCGAAGGA+TGG + chr8_1:47529456-47529475 Msa1197290:CDS 50.0%
GGTGTACTCGAAGGATGGTT+TGG + chr8_1:47529461-47529480 Msa1197290:CDS 50.0%
! AAGGATGGTTTGGCGAACAC+TGG + chr8_1:47529471-47529490 Msa1197290:CDS 50.0%
TTTGGCGAACACTGGTCAAC+TGG + chr8_1:47529479-47529498 Msa1197290:CDS 50.0%
TTGGCGAACACTGGTCAACT+GGG + chr8_1:47529480-47529499 Msa1197290:CDS 50.0%
!! TTCTGGATTAGCAGTGGCTC+TGG + chr8_1:47529699-47529718 Msa1197290:three_prime_UTR 50.0%
CTCGTGTTAACGGTGGAAAG+TGG - chr8_1:47530281-47530300 None:intergenic 50.0%
CACTTTCCACCGTTAACACG+AGG + chr8_1:47530279-47530298 Msa1197290:intron 50.0%
ATATGGCCTCGTGTTAACGG+TGG - chr8_1:47530288-47530307 None:intergenic 50.0%
CAGAGAAAGGGAGATGCCAT+GGG - chr8_1:47530608-47530627 None:intergenic 50.0%
TCCGTTTCTCTCTTCACACC+AGG + chr8_1:47530667-47530686 Msa1197290:intron 50.0%
CCAGAGGAGAATTGATGGAG+AGG - chr8_1:47530986-47531005 None:intergenic 50.0%
CCTCTCCATCAATTCTCCTC+TGG + chr8_1:47530983-47531002 Msa1197290:three_prime_UTR 50.0%
AGGCTCCAGAGGAGAATTGA+TGG - chr8_1:47530991-47531010 None:intergenic 50.0%
TCTGTAACACAGGGAGAGAC+AGG - chr8_1:47531011-47531030 None:intergenic 50.0%
CCCATGGAAACGTATCACGA+TGG + chr8_1:47531053-47531072 Msa1197290:three_prime_UTR 50.0%
GTATCACGATGGTAACAGCG+AGG + chr8_1:47531064-47531083 Msa1197290:three_prime_UTR 50.0%
AACAGCGAGGAAACCTCAAC+AGG + chr8_1:47531077-47531096 Msa1197290:three_prime_UTR 50.0%
! GTTGGGTTGTTCTACCCACA+AGG + chr8_1:47531414-47531433 Msa1197290:intron 50.0%
TTTGGGAGATGGGGACATTG+GGG + chr8_1:47531974-47531993 Msa1197290:three_prime_UTR 50.0%
! AGCTGGTAGGTGAGTGTTGT+AGG + chr8_1:47532009-47532028 Msa1197290:three_prime_UTR 50.0%
! GCTGGTAGGTGAGTGTTGTA+GGG + chr8_1:47532010-47532029 Msa1197290:three_prime_UTR 50.0%
! GAAGGTGGAGGCATAGCTAT+GGG + chr8_1:47533720-47533739 Msa1197290:three_prime_UTR 50.0%
GGGAAAAATGGTAACCTGGG+AGG + chr8_1:47533916-47533935 Msa1197290:three_prime_UTR 50.0%
GTAACCTGGGAGGACATCAT+CGG + chr8_1:47533926-47533945 Msa1197290:three_prime_UTR 50.0%
TAGCTACCTCTCCATTCGAC+GGG - chr8_1:47533956-47533975 None:intergenic 50.0%
CTAGCTACCTCTCCATTCGA+CGG - chr8_1:47533957-47533976 None:intergenic 50.0%
TCGAATGGAGAGGTAGCTAG+AGG + chr8_1:47533957-47533976 Msa1197290:three_prime_UTR 50.0%
GGCTTTACCTGCAGCCATGA+AGG + chr8_1:47528572-47528591 Msa1197290:CDS 55.0%
CCCAAAACCTTCATGGCTGC+AGG - chr8_1:47528582-47528601 None:intergenic 55.0%
AAAGGGAGATGCCATGGGAG+GGG - chr8_1:47530603-47530622 None:intergenic 55.0%
GAAAGGGAGATGCCATGGGA+GGG - chr8_1:47530604-47530623 None:intergenic 55.0%
AGAAAGGGAGATGCCATGGG+AGG - chr8_1:47530605-47530624 None:intergenic 55.0%
GCAGAGAAAGGGAGATGCCA+TGG - chr8_1:47530609-47530628 None:intergenic 55.0%
ATCAACCGAGATCACGACGG+AGG - chr8_1:47530644-47530663 None:intergenic 55.0%
!! GAATGCTTTGGGACGACCCA+TGG + chr8_1:47531037-47531056 Msa1197290:three_prime_UTR 55.0%
GCAGTGCTACAACAGCTGGT+AGG + chr8_1:47531996-47532015 Msa1197290:three_prime_UTR 55.0%
! CGAAGGTGGAGGCATAGCTA+TGG + chr8_1:47533719-47533738 Msa1197290:three_prime_UTR 55.0%
TCAACCGATGATGTCCTCCC+AGG - chr8_1:47533933-47533952 None:intergenic 55.0%
! TCATCGGTTGACCCGTCGAA+TGG + chr8_1:47533942-47533961 Msa1197290:three_prime_UTR 55.0%
GGCAAGGGCGAGCAGAGAAA+GGG - chr8_1:47530620-47530639 None:intergenic 60.0%
AGGCAAGGGCGAGCAGAGAA+AGG - chr8_1:47530621-47530640 None:intergenic 60.0%
GATCACGACGGAGGAGGCAA+GGG - chr8_1:47530635-47530654 None:intergenic 60.0%
AGATCACGACGGAGGAGGCA+AGG - chr8_1:47530636-47530655 None:intergenic 60.0%
TGCCTCCTCCGTCGTGATCT+CGG + chr8_1:47530636-47530655 Msa1197290:intron 60.0%
AACCGAGATCACGACGGAGG+AGG - chr8_1:47530641-47530660 None:intergenic 60.0%
TGGGGCAGTGCTACAACAGC+TGG + chr8_1:47531992-47532011 Msa1197290:three_prime_UTR 60.0%
! GGTGAGTGTTGTAGGGAGCC+AGG + chr8_1:47532017-47532036 Msa1197290:three_prime_UTR 60.0%
GGTTGACCCGTCGAATGGAG+AGG + chr8_1:47533947-47533966 Msa1197290:three_prime_UTR 60.0%
GGAGATGCCATGGGAGGGGA+GGG - chr8_1:47530599-47530618 None:intergenic 65.0%
CAGGGAGAGACAGGCTCCAG+AGG - chr8_1:47531002-47531021 None:intergenic 65.0%
AGGGGAGGGAGAGCGGAGGA+TGG - chr8_1:47530585-47530604 None:intergenic 70.0%
CCATGGGAGGGGAGGGAGAG+CGG - chr8_1:47530592-47530611 None:intergenic 70.0%
GGGAGATGCCATGGGAGGGG+AGG - chr8_1:47530600-47530619 None:intergenic 70.0%
TGGGAGGGGAGGGAGAGCGG+AGG - chr8_1:47530589-47530608 None:intergenic 75.0%
CCGCTCTCCCTCCCCTCCCA+TGG + chr8_1:47530589-47530608 Msa1197290:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47528330 47534094 47528330 ID=Msa1197290;Name=Msa1197290
chr8_1 mRNA 47528330 47534094 47528330 ID=Msa1197290-mRNA-1;Parent=Msa1197290;Name=Msa1197290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=33|0.83|0.85|1|0.33|0.42|7|2099|191
chr8_1 exon 47528330 47528810 47528330 ID=Msa1197290-mRNA-1:exon:15065;Parent=Msa1197290-mRNA-1
chr8_1 exon 47529417 47529535 47529417 ID=Msa1197290-mRNA-1:exon:15066;Parent=Msa1197290-mRNA-1
chr8_1 exon 47529683 47529886 47529683 ID=Msa1197290-mRNA-1:exon:15067;Parent=Msa1197290-mRNA-1
chr8_1 exon 47530875 47531098 47530875 ID=Msa1197290-mRNA-1:exon:15068;Parent=Msa1197290-mRNA-1
chr8_1 exon 47531194 47531319 47531194 ID=Msa1197290-mRNA-1:exon:15069;Parent=Msa1197290-mRNA-1
chr8_1 exon 47531953 47532930 47531953 ID=Msa1197290-mRNA-1:exon:15070;Parent=Msa1197290-mRNA-1
chr8_1 exon 47533519 47534094 47533519 ID=Msa1197290-mRNA-1:exon:15071;Parent=Msa1197290-mRNA-1
chr8_1 five_prime_UTR 47528330 47528362 47528330 ID=Msa1197290-mRNA-1:five_prime_utr;Parent=Msa1197290-mRNA-1
chr8_1 CDS 47528363 47528810 47528363 ID=Msa1197290-mRNA-1:cds;Parent=Msa1197290-mRNA-1
chr8_1 CDS 47529417 47529535 47529417 ID=Msa1197290-mRNA-1:cds;Parent=Msa1197290-mRNA-1
chr8_1 CDS 47529683 47529691 47529683 ID=Msa1197290-mRNA-1:cds;Parent=Msa1197290-mRNA-1
chr8_1 three_prime_UTR 47529692 47529886 47529692 ID=Msa1197290-mRNA-1:three_prime_utr;Parent=Msa1197290-mRNA-1
chr8_1 three_prime_UTR 47530875 47531098 47530875 ID=Msa1197290-mRNA-1:three_prime_utr;Parent=Msa1197290-mRNA-1
chr8_1 three_prime_UTR 47531194 47531319 47531194 ID=Msa1197290-mRNA-1:three_prime_utr;Parent=Msa1197290-mRNA-1
chr8_1 three_prime_UTR 47531953 47532930 47531953 ID=Msa1197290-mRNA-1:three_prime_utr;Parent=Msa1197290-mRNA-1
chr8_1 three_prime_UTR 47533519 47534094 47533519 ID=Msa1197290-mRNA-1:three_prime_utr;Parent=Msa1197290-mRNA-1
Gene Sequence

>Msa1197290

ATGGGGTTACACAACAATCCAACAGGAACAAATGAAATTGTTGGAGAACAATATTGTCCATTGCTACAAACCAAAACAGATGAGAAAATTGAAGTTGAAATTCAACATGGTGATGATGGATCCAATAGTAACAAGAATAATGAATCAGCAGCATCATTTGCTGGTTCTGTGTTCAATCTATCAACAACCATAATTGGTGCTGGAATCATGGCTTTACCTGCAGCCATGAAGGTTTTGGGATTAACCATTGGTATTGCTTCAATCATATTCCTTGCTTTGCTTACTCATACCTCTTTGGATATTCTTATGAGGTTTAGTAGAGTTGCTAAGGCTCAATCTTATGGTGATGTCATGGGATATGCTTTTGGAAGTGTTGGTAGATTGGTTTTTCAGATTTCTGTTCTTTTCAACAACTTTGGTATTCTTGTTGTCTACATCATCATCATTGGTGATGTACTGTCTGGAACAACTTCATCTGGAAGTCATCACTTCGGTGTACTCGAAGGATGGTTTGGCGAACACTGGTCAACTGGGCGTACTTTTGTGCTTCTTATTACAACCCTTGTGATTCATTAA
Protein sequence

>Msa1197290

MGLHNNPTGTNEIVGEQYCPLLQTKTDEKIEVEIQHGDDGSNSNKNNESAASFAGSVFNLSTTIIGAGIMALPAAMKVLGLTIGIASIIFLALLTHTSLDILMRFSRVAKAQSYGDVMGYAFGSVGRLVFQISVLFNNFGILVVYIIIIGDVLSGTTSSGSHHFGVLEGWFGEHWSTGRTFVLLITTLVIH*