AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197380 MtrunA17_Chr8g0366071 97.590 166 1 1 1 163 150 315 1.32e-119 340
Msa1197380 MtrunA17_Chr5g0420791 74.847 163 41 0 1 163 146 308 1.13e-93 274
Msa1197380 MtrunA17_Chr4g0073991 50.318 157 78 0 1 157 182 338 7.02e-57 182
Msa1197380 MtrunA17_Chr4g0001371 49.020 153 78 0 1 153 171 323 1.41e-53 173
Msa1197380 MtrunA17_Chr2g0309681 47.436 156 80 1 1 156 235 388 1.42e-51 169
Msa1197380 MtrunA17_Chr8g0356301 45.513 156 83 1 1 156 229 382 4.41e-50 165
Msa1197380 MtrunA17_Chr3g0141411 44.079 152 85 0 1 152 163 314 3.66e-47 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197380 AT1G13635.2 76.687 163 38 0 1 163 149 311 1.75e-92 271
Msa1197380 AT1G13635.1 76.687 163 38 0 1 163 149 311 1.75e-92 271
Msa1197380 AT5G57970.1 48.101 158 82 0 1 158 188 345 6.72e-54 174
Msa1197380 AT5G57970.2 48.101 158 82 0 1 158 188 345 6.72e-54 174
Msa1197380 AT5G44680.1 48.077 156 79 1 1 156 198 351 3.19e-53 172
Msa1197380 AT1G75090.1 46.203 158 85 0 1 158 153 310 3.62e-52 169
Msa1197380 AT1G15970.1 43.949 157 88 0 1 157 179 335 4.04e-49 162
Msa1197380 AT1G15970.2 43.949 157 88 0 1 157 179 335 4.04e-49 162
Msa1197380 AT1G80850.1 41.401 157 92 0 1 157 168 324 1.26e-46 155
Msa1197380 AT3G12710.1 44.654 159 86 1 1 159 156 312 2.00e-46 154

Find 63 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCTGTTCCTCCATTT+TGG 0.208004 8_1:-47691785 None:intergenic
TTGCTTAGAGCCTCTGCTTT+TGG 0.213374 8_1:-47692497 None:intergenic
TCCTTACACTGTTGCCAAAA+TGG 0.236844 8_1:+47691771 Msa1197380:CDS
TATTTGTATTTGTTAATTAT+TGG 0.253663 8_1:-47692449 None:intergenic
CTCTTCATCAACAGGTTGTT+AGG 0.258022 8_1:+47692378 Msa1197380:intron
CTCCTTAATGGGACACTTCT+TGG 0.263263 8_1:-47692473 None:intergenic
AAAGTACAAGCGATGAAAAT+TGG 0.290448 8_1:-47692766 None:intergenic
ACCCAAGAAGTGTCCCATTA+AGG 0.321221 8_1:+47692471 Msa1197380:CDS
AGCTGATTCTTTGACTCCAT+TGG 0.322748 8_1:+47688453 Msa1197380:five_prime_UTR
TTCAAGAAAGTGTACCCTAT+TGG 0.332385 8_1:+47688352 Msa1197380:five_prime_UTR
ATTTACCTTCATTATGCATT+TGG 0.335454 8_1:-47691875 None:intergenic
TCAAGAAAGTGTACCCTATT+GGG 0.368676 8_1:+47688353 Msa1197380:five_prime_UTR
ATATGGTAAAACGTGGATTT+CGG 0.377744 8_1:+47692522 Msa1197380:CDS
TTTGAGATGCTTGCAATGTC+TGG 0.382865 8_1:+47691577 Msa1197380:exon
TCCTTAATGGGACACTTCTT+GGG 0.390688 8_1:-47692472 None:intergenic
ATATGCTAACTTGTGCCCTT+AGG 0.393374 8_1:+47688681 Msa1197380:five_prime_UTR
CTTTGACTCCATTGGATGAA+AGG 0.411007 8_1:+47688461 Msa1197380:five_prime_UTR
AGAGGCTCTAAGCAAGGATA+TGG 0.413104 8_1:+47692505 Msa1197380:CDS
TAGAATTTCATGATGAATGC+TGG 0.424817 8_1:+47691063 Msa1197380:five_prime_UTR
AAATATAAGAAAAGAAGCTT+TGG 0.426991 8_1:+47688264 Msa1197380:five_prime_UTR
TGTTGCCAAAATGGAGGAAC+AGG 0.430065 8_1:+47691780 Msa1197380:CDS
GATTGCTCATGGACTACAAT+TGG 0.434181 8_1:+47691599 Msa1197380:CDS
GGGAATTGAAAAGGTGCAAC+TGG 0.438704 8_1:+47688590 Msa1197380:five_prime_UTR
TCTTCATCAACAGGTTGTTA+GGG 0.449451 8_1:+47692379 Msa1197380:intron
CCACTAGTGACCACTGAGGC+TGG 0.456454 8_1:+47688568 Msa1197380:five_prime_UTR
TGCAATGTCTGGATTGCTCA+TGG 0.456628 8_1:+47691588 Msa1197380:CDS
GATTCTCATCTTGTGCCCTA+AGG 0.459066 8_1:-47688697 None:intergenic
CACTAGTGACCACTGAGGCT+GGG 0.470676 8_1:+47688569 Msa1197380:five_prime_UTR
CATACAAATTATTACCTAAG+TGG 0.470871 8_1:-47691646 None:intergenic
TATGCTAACTTGTGCCCTTA+GGG 0.477821 8_1:+47688682 Msa1197380:five_prime_UTR
GATCATTTAGTAGCTACATA+TGG 0.478959 8_1:+47692408 Msa1197380:CDS
AAAACGTGGATTTCGGTTTG+TGG 0.483743 8_1:+47692529 Msa1197380:CDS
AAACGTGGATTTCGGTTTGT+GGG 0.497995 8_1:+47692530 Msa1197380:CDS
TACAAACAAGTAGTTACAAA+CGG 0.505820 8_1:-47692888 None:intergenic
TATAATGAAATGATATTGCA+TGG 0.512123 8_1:-47688648 None:intergenic
AGAATTTCATGATGAATGCT+GGG 0.513589 8_1:+47691064 Msa1197380:five_prime_UTR
CAACAGGTTGTTAGGGAATG+TGG 0.514316 8_1:+47692386 Msa1197380:intron
ACTTACTTGTCGTCATAAGC+TGG 0.516840 8_1:-47691092 None:intergenic
CCAGCCTCAGTGGTCACTAG+TGG 0.517176 8_1:-47688568 None:intergenic
ATAAAAGAGTGCACTATCAC+TGG 0.517350 8_1:-47692554 None:intergenic
GCCTCCAAGGTCTTTCTGCT+AGG 0.519579 8_1:-47692640 None:intergenic
ATTGACCATTGATCATCTTG+TGG 0.520664 8_1:+47692589 Msa1197380:CDS
TTTCAGCTTCTTCACATGAA+AGG 0.522846 8_1:+47688506 Msa1197380:five_prime_UTR
ATTCTCATCTTGTGCCCTAA+GGG 0.523813 8_1:-47688696 None:intergenic
CTGAGGCTGGGGAATTGAAA+AGG 0.526492 8_1:+47688581 Msa1197380:five_prime_UTR
ACAATCCACAAGATGATCAA+TGG 0.535979 8_1:-47692594 None:intergenic
CAATGCCAAATGCATAATGA+AGG 0.541462 8_1:+47691870 Msa1197380:CDS
ACTAGTGACCACTGAGGCTG+GGG 0.547158 8_1:+47688570 Msa1197380:five_prime_UTR
TAAGCCTAGCAGAAAGACCT+TGG 0.551983 8_1:+47692636 Msa1197380:CDS
GATGAAATCCTTTCATCCAA+TGG 0.555797 8_1:-47688469 None:intergenic
CAAAACCAAATTGAAAATTG+TGG 0.576016 8_1:-47692690 None:intergenic
GCCTAGCAGAAAGACCTTGG+AGG 0.593814 8_1:+47692639 Msa1197380:CDS
GATTTGACAAGTACAAGGAA+TGG 0.594977 8_1:-47692803 None:intergenic
TAAGAAAAGAAGCTTTGGAA+AGG 0.598952 8_1:+47688269 Msa1197380:five_prime_UTR
TTTCAATTCCCCAGCCTCAG+TGG 0.604806 8_1:-47688578 None:intergenic
AAAAGCAGAGGCTCTAAGCA+AGG 0.619818 8_1:+47692499 Msa1197380:CDS
ATATAGATTTGACAAGTACA+AGG 0.624872 8_1:-47692808 None:intergenic
GTTAGTTAGATATGCCTCCA+AGG 0.629114 8_1:-47692653 None:intergenic
AGCAAGGATATGGTAAAACG+TGG 0.648110 8_1:+47692515 Msa1197380:CDS
TTACACTGTTGCCAAAATGG+AGG 0.656370 8_1:+47691774 Msa1197380:CDS
ATTAAGGAGTCCAAAAGCAG+AGG 0.668988 8_1:+47692487 Msa1197380:CDS
GAATTTCATGATGAATGCTG+GGG 0.685294 8_1:+47691065 Msa1197380:five_prime_UTR
AAGTCCACTAGTGACCACTG+AGG 0.813049 8_1:+47688564 Msa1197380:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+AGG - chr8_1:47690917-47690936 None:intergenic 0.0%
!! TAAAAAATTAAAATATAATA+TGG - chr8_1:47691201-47691220 None:intergenic 0.0%
!!! TAAAATGTTTAAATTTTGAT+TGG + chr8_1:47688982-47689001 Msa1197380:intron 10.0%
!! AAAAATGATAAATTTAATCA+TGG - chr8_1:47690134-47690153 None:intergenic 10.0%
!! GTTATTAATAGAATTTAAAA+TGG + chr8_1:47690372-47690391 Msa1197380:intron 10.0%
!!! TTTTTTTTTTTTTTTAGGAA+AGG - chr8_1:47690912-47690931 None:intergenic 10.0%
!!! TATTTGTATTTGTTAATTAT+TGG - chr8_1:47692452-47692471 None:intergenic 10.0%
!!! ATATTTGTTTTAGACATATT+TGG - chr8_1:47688250-47688269 None:intergenic 15.0%
!!! TTTTATTATGGAAGAAATTT+TGG - chr8_1:47688330-47688349 None:intergenic 15.0%
!!! AAATTTAAACATTTTAGCAA+TGG - chr8_1:47688978-47688997 None:intergenic 15.0%
!! GTTTATATAAGCTTATATTA+AGG + chr8_1:47689010-47689029 Msa1197380:intron 15.0%
!!! AAATAATTTAAAACTGAAAG+TGG - chr8_1:47689428-47689447 None:intergenic 15.0%
!!! TTTTTAGTAAATTTAGTTCT+TGG - chr8_1:47689643-47689662 None:intergenic 15.0%
!!! TAAAATTACTTTGTTATGTT+CGG - chr8_1:47689875-47689894 None:intergenic 15.0%
!!! AAAAATATGAAATTGCATTT+TGG - chr8_1:47689955-47689974 None:intergenic 15.0%
!!! AAAAAACTCTCTATTTTTAT+AGG + chr8_1:47690246-47690265 Msa1197380:intron 15.0%
!!! AAAAACTCTCTATTTTTATA+GGG + chr8_1:47690247-47690266 Msa1197380:intron 15.0%
!! AAATCAATCATAAAATTGTA+GGG - chr8_1:47691172-47691191 None:intergenic 15.0%
!! AAAATCAATCATAAAATTGT+AGG - chr8_1:47691173-47691192 None:intergenic 15.0%
!!! AATGTTAACATTTGAAATTT+TGG + chr8_1:47691371-47691390 Msa1197380:intron 15.0%
!!! CAAATTATAACTTTTTTACA+TGG + chr8_1:47691670-47691689 Msa1197380:intron 15.0%
!! AAAAAAAAGTGAAATTGATA+TGG - chr8_1:47691908-47691927 None:intergenic 15.0%
!!! TTATTATTTTTGAGTTTAGA+AGG + chr8_1:47691956-47691975 Msa1197380:intron 15.0%
!!! TTTTTTGTTTCATTTATTGA+TGG - chr8_1:47692839-47692858 None:intergenic 15.0%
!! ATAAATGAAACAAAAAAGAA+AGG + chr8_1:47692842-47692861 Msa1197380:three_prime_UTR 15.0%
!! AAATATAAGAAAAGAAGCTT+TGG + chr8_1:47688264-47688283 Msa1197380:five_prime_UTR 20.0%
!!! CTTTCTTGAAGATTTTATTA+TGG - chr8_1:47688342-47688361 None:intergenic 20.0%
!! TATAATGAAATGATATTGCA+TGG - chr8_1:47688651-47688670 None:intergenic 20.0%
!! AATACAATGTTAGAGATATA+AGG - chr8_1:47688865-47688884 None:intergenic 20.0%
!! TATATAAGCTTATATTAAGG+AGG + chr8_1:47689013-47689032 Msa1197380:intron 20.0%
!!! GATAAAAATATCTGTTTTCA+GGG - chr8_1:47689067-47689086 None:intergenic 20.0%
!!! TGATAAAAATATCTGTTTTC+AGG - chr8_1:47689068-47689087 None:intergenic 20.0%
!! AATACAAATTAATGCTAAGT+TGG - chr8_1:47689296-47689315 None:intergenic 20.0%
!!! CTCATTTAGAATTTATTCTT+GGG - chr8_1:47689605-47689624 None:intergenic 20.0%
!! AAAATAAAGAGTGACTAATA+TGG - chr8_1:47690293-47690312 None:intergenic 20.0%
!! ATCGACTATTATGTTATATT+AGG + chr8_1:47690659-47690678 Msa1197380:intron 20.0%
!! ATAACATGTCAAAAAGTTTA+AGG - chr8_1:47690749-47690768 None:intergenic 20.0%
!! AATTGGTAAGATTATGATTA+GGG - chr8_1:47690809-47690828 None:intergenic 20.0%
!! AAATTGGTAAGATTATGATT+AGG - chr8_1:47690810-47690829 None:intergenic 20.0%
!!! TTTTTGTCTTCTTAGAAAAT+TGG - chr8_1:47690826-47690845 None:intergenic 20.0%
!!! TTTTTTTTTTAGGAAAGGAA+AGG - chr8_1:47690907-47690926 None:intergenic 20.0%
!! AATAAATCTATTCCAGAATA+AGG + chr8_1:47691275-47691294 Msa1197380:intron 20.0%
!!! TTTAATGATTTTCCTTATTC+TGG - chr8_1:47691290-47691309 None:intergenic 20.0%
!! AAAATCATTAAATTGTAACG+AGG + chr8_1:47691298-47691317 Msa1197380:intron 20.0%
!! GACAGAAATTATAAAAAGAA+GGG + chr8_1:47691621-47691640 Msa1197380:CDS 20.0%
!!! AAATTTTTATTTTGGAGACA+AGG - chr8_1:47692070-47692089 None:intergenic 20.0%
!! TGTCTCCAAAATAAAAATTT+AGG + chr8_1:47692070-47692089 Msa1197380:intron 20.0%
!!! GAATGCCTAAATTTTTATTT+TGG - chr8_1:47692078-47692097 None:intergenic 20.0%
!! TATACTCAAACAATTGTTTA+GGG - chr8_1:47692113-47692132 None:intergenic 20.0%
!! ATATACTCAAACAATTGTTT+AGG - chr8_1:47692114-47692133 None:intergenic 20.0%
!!! ATTTCTAAAACACAACTTAT+CGG + chr8_1:47692247-47692266 Msa1197380:intron 20.0%
! TACATATCATGTCCATTAAT+TGG + chr8_1:47689147-47689166 Msa1197380:intron 25.0%
!! AATTTAAAACTGAAAGTGGT+AGG - chr8_1:47689424-47689443 None:intergenic 25.0%
! AGTGTTTCAAAAACAATTTG+TGG + chr8_1:47689501-47689520 Msa1197380:intron 25.0%
!! CCTCATTTAGAATTTATTCT+TGG - chr8_1:47689606-47689625 None:intergenic 25.0%
! CCAAGAATAAATTCTAAATG+AGG + chr8_1:47689603-47689622 Msa1197380:intron 25.0%
! TCTCTTGTGTCAAAAAATTA+TGG - chr8_1:47689982-47690001 None:intergenic 25.0%
!!! TTCAGATTCTAAAATCCAAA+GGG + chr8_1:47690026-47690045 Msa1197380:intron 25.0%
!!! TTTCGGATTTTTTACATGTT+TGG - chr8_1:47690089-47690108 None:intergenic 25.0%
!! TGAAAATCGAATGACATTTT+TGG + chr8_1:47690191-47690210 Msa1197380:intron 25.0%
!!! GAATGACATTTTTGGATTTT+CGG + chr8_1:47690199-47690218 Msa1197380:intron 25.0%
! ATTGGTAAGATTATGATTAG+GGG - chr8_1:47690808-47690827 None:intergenic 25.0%
!! AAACTATAATCTTTTCCGAT+TGG + chr8_1:47690939-47690958 Msa1197380:intron 25.0%
! TAATCTAAGTTTAGACCAAT+CGG - chr8_1:47690957-47690976 None:intergenic 25.0%
! ACATCAAAATTAGTTATACG+TGG - chr8_1:47691022-47691041 None:intergenic 25.0%
!!! TATAACATACAAGTGTTGAA+CGG - chr8_1:47691126-47691145 None:intergenic 25.0%
!!! ACTTTGATTTTCAGATAGAT+TGG + chr8_1:47691330-47691349 Msa1197380:intron 25.0%
!!! CTTTGATTTTCAGATAGATT+GGG + chr8_1:47691331-47691350 Msa1197380:intron 25.0%
!!! TTTGATTTTCAGATAGATTG+GGG + chr8_1:47691332-47691351 Msa1197380:intron 25.0%
! ATCAATTAAGATGAGATAGT+TGG - chr8_1:47691535-47691554 None:intergenic 25.0%
! GGACAGAAATTATAAAAAGA+AGG + chr8_1:47691620-47691639 Msa1197380:CDS 25.0%
! CATACAAATTATTACCTAAG+TGG - chr8_1:47691649-47691668 None:intergenic 25.0%
! ATTTACCTTCATTATGCATT+TGG - chr8_1:47691878-47691897 None:intergenic 25.0%
!!! AGACAAGGTTTAGTTTTTTA+GGG - chr8_1:47692055-47692074 None:intergenic 25.0%
!!! TGTGAAAAATCTAGTTTTAC+AGG - chr8_1:47692177-47692196 None:intergenic 25.0%
! CAAAACCAAATTGAAAATTG+TGG - chr8_1:47692693-47692712 None:intergenic 25.0%
! ATATAGATTTGACAAGTACA+AGG - chr8_1:47692811-47692830 None:intergenic 25.0%
! TACAAACAAGTAGTTACAAA+CGG - chr8_1:47692891-47692910 None:intergenic 25.0%
!! TAAGAAAAGAAGCTTTGGAA+AGG + chr8_1:47688269-47688288 Msa1197380:five_prime_UTR 30.0%
AACTGGATCACAAAAAATAG+TGG + chr8_1:47688607-47688626 Msa1197380:five_prime_UTR 30.0%
GTCAAATATGTCTCATATTG+CGG - chr8_1:47688904-47688923 None:intergenic 30.0%
! GCAATTTTTCACAATATCGA+AGG + chr8_1:47688925-47688944 Msa1197380:intron 30.0%
AGCTCAAAACAACCAATTAA+TGG - chr8_1:47689162-47689181 None:intergenic 30.0%
! ATTTTGCAATACCAACATAG+TGG + chr8_1:47689318-47689337 Msa1197380:intron 30.0%
ATTAAGTGTAACCACTATGT+TGG - chr8_1:47689332-47689351 None:intergenic 30.0%
AACTGATAATAGCTAGTTGT+AGG - chr8_1:47689464-47689483 None:intergenic 30.0%
TTGTGATTATATTTGCAGTC+AGG - chr8_1:47689550-47689569 None:intergenic 30.0%
AGATCACATTAATCTCACTA+AGG + chr8_1:47689573-47689592 Msa1197380:intron 30.0%
! GACATTTTTGTACTTTCATG+AGG - chr8_1:47689766-47689785 None:intergenic 30.0%
TACTACAATCCAAAAATCGA+GGG - chr8_1:47689788-47689807 None:intergenic 30.0%
AACCTTAGCTAAAATGACAA+CGG - chr8_1:47689840-47689859 None:intergenic 30.0%
!! AATTGCATTTTGGCACAAAA+GGG - chr8_1:47689945-47689964 None:intergenic 30.0%
!! AAATTGCATTTTGGCACAAA+AGG - chr8_1:47689946-47689965 None:intergenic 30.0%
!! GTTCAGATTCTAAAATCCAA+AGG + chr8_1:47690025-47690044 Msa1197380:intron 30.0%
AATGAAAGAAAAACACGCTT+CGG + chr8_1:47690157-47690176 Msa1197380:intron 30.0%
ACTAATATGGTGTGAAATTC+GGG - chr8_1:47690280-47690299 None:intergenic 30.0%
GACTAATATGGTGTGAAATT+CGG - chr8_1:47690281-47690300 None:intergenic 30.0%
ATGTATGTACCTAAGAAATG+CGG - chr8_1:47690332-47690351 None:intergenic 30.0%
!!! AACACGATATTTTAGAGCAT+TGG - chr8_1:47690531-47690550 None:intergenic 30.0%
! CTTGATTTTTATGCTCAAGT+CGG - chr8_1:47690697-47690716 None:intergenic 30.0%
CATACAACAACCTATTAAAC+AGG + chr8_1:47690717-47690736 Msa1197380:intron 30.0%
CTATAGTTGTAAAACAAGTG+TGG - chr8_1:47690884-47690903 None:intergenic 30.0%
TAGAATTTCATGATGAATGC+TGG + chr8_1:47691063-47691082 Msa1197380:five_prime_UTR 30.0%
AGAATTTCATGATGAATGCT+GGG + chr8_1:47691064-47691083 Msa1197380:five_prime_UTR 30.0%
AGACAAAATAACAAAACCTG+AGG + chr8_1:47691251-47691270 Msa1197380:intron 30.0%
TGGAATAGATTTATTTCCTC+AGG - chr8_1:47691270-47691289 None:intergenic 30.0%
! TTATGTAGAGAAGTTTTTGC+TGG + chr8_1:47691742-47691761 Msa1197380:intron 30.0%
!!! GAGACAAGGTTTAGTTTTTT+AGG - chr8_1:47692056-47692075 None:intergenic 30.0%
! AGATTTTTCACATCAAATGC+AGG + chr8_1:47692185-47692204 Msa1197380:intron 30.0%
GTAAAAAAAAACACGACCTA+GGG - chr8_1:47692335-47692354 None:intergenic 30.0%
AGTAAAAAAAAACACGACCT+AGG - chr8_1:47692336-47692355 None:intergenic 30.0%
GATCATTTAGTAGCTACATA+TGG + chr8_1:47692408-47692427 Msa1197380:CDS 30.0%
ATATGGTAAAACGTGGATTT+CGG + chr8_1:47692522-47692541 Msa1197380:CDS 30.0%
! CACTACCACAATTTTCAATT+TGG + chr8_1:47692685-47692704 Msa1197380:three_prime_UTR 30.0%
AAAGTACAAGCGATGAAAAT+TGG - chr8_1:47692769-47692788 None:intergenic 30.0%
!!! TCATCGCTTGTACTTTTTTT+TGG + chr8_1:47692773-47692792 Msa1197380:three_prime_UTR 30.0%
! TTCAAGAAAGTGTACCCTAT+TGG + chr8_1:47688352-47688371 Msa1197380:five_prime_UTR 35.0%
! TCAAGAAAGTGTACCCTATT+GGG + chr8_1:47688353-47688372 Msa1197380:five_prime_UTR 35.0%
GATGAAATCCTTTCATCCAA+TGG - chr8_1:47688472-47688491 None:intergenic 35.0%
TTTCAGCTTCTTCACATGAA+AGG + chr8_1:47688506-47688525 Msa1197380:five_prime_UTR 35.0%
CTGTGCACAAAAACATCTTA+AGG + chr8_1:47689230-47689249 Msa1197380:intron 35.0%
ACATTAATCTCACTAAGGAG+CGG + chr8_1:47689578-47689597 Msa1197380:intron 35.0%
! CAAAAATGTCCCTCGATTTT+TGG + chr8_1:47689776-47689795 Msa1197380:intron 35.0%
CTACTACAATCCAAAAATCG+AGG - chr8_1:47689789-47689808 None:intergenic 35.0%
!!! ATCCGTTGTCATTTTAGCTA+AGG + chr8_1:47689835-47689854 Msa1197380:intron 35.0%
!! ATTGCATTTTGGCACAAAAG+GGG - chr8_1:47689944-47689963 None:intergenic 35.0%
!!! CCGATGCTAACTACTTTTTT+CGG - chr8_1:47690106-47690125 None:intergenic 35.0%
CCGAAAAAAGTAGTTAGCAT+CGG + chr8_1:47690103-47690122 Msa1197380:intron 35.0%
AAGGACTAAGCCTGTTTAAT+AGG - chr8_1:47690730-47690749 None:intergenic 35.0%
GTAAGATTATGATTAGGGGT+GGG - chr8_1:47690804-47690823 None:intergenic 35.0%
GAATTTCATGATGAATGCTG+GGG + chr8_1:47691065-47691084 Msa1197380:five_prime_UTR 35.0%
GATTGGGGATAGAACATAAT+TGG + chr8_1:47691347-47691366 Msa1197380:intron 35.0%
TAAAAAGAAGGGAACCACTT+AGG + chr8_1:47691632-47691651 Msa1197380:CDS 35.0%
CAATGCCAAATGCATAATGA+AGG + chr8_1:47691870-47691889 Msa1197380:CDS 35.0%
!!! TGAGTTTAGAAGGCTAGTTT+TGG + chr8_1:47691966-47691985 Msa1197380:intron 35.0%
ACACTAAGGTTACTTAGGTA+TGG + chr8_1:47691993-47692012 Msa1197380:intron 35.0%
!!! TTTAGTTTTTTAGGGCAAGC+TGG - chr8_1:47692047-47692066 None:intergenic 35.0%
!!! GAGTTCGAGTTTTGGTTATT+TGG - chr8_1:47692150-47692169 None:intergenic 35.0%
GATATCCACATCACATTCTT+CGG - chr8_1:47692218-47692237 None:intergenic 35.0%
!! ACACAACTTATCGGTTTATG+AGG + chr8_1:47692256-47692275 Msa1197380:intron 35.0%
! CTGTTGATGAAGAGTAACTA+AGG - chr8_1:47692372-47692391 None:intergenic 35.0%
CTTAGTTACTCTTCATCAAC+AGG + chr8_1:47692370-47692389 Msa1197380:intron 35.0%
TCTTCATCAACAGGTTGTTA+GGG + chr8_1:47692379-47692398 Msa1197380:intron 35.0%
! ATAAAAGAGTGCACTATCAC+TGG - chr8_1:47692557-47692576 None:intergenic 35.0%
ATTGACCATTGATCATCTTG+TGG + chr8_1:47692589-47692608 Msa1197380:CDS 35.0%
ACAATCCACAAGATGATCAA+TGG - chr8_1:47692597-47692616 None:intergenic 35.0%
!!! GCTTGTACTTTTTTTTGGAG+AGG + chr8_1:47692778-47692797 Msa1197380:three_prime_UTR 35.0%
GATTTGACAAGTACAAGGAA+TGG - chr8_1:47692806-47692825 None:intergenic 35.0%
!!! TGCTTTTTTGCAGCCCAATA+GGG - chr8_1:47688369-47688388 None:intergenic 40.0%
! AGCTGATTCTTTGACTCCAT+TGG + chr8_1:47688453-47688472 Msa1197380:five_prime_UTR 40.0%
CTTTGACTCCATTGGATGAA+AGG + chr8_1:47688461-47688480 Msa1197380:five_prime_UTR 40.0%
! ATATGCTAACTTGTGCCCTT+AGG + chr8_1:47688681-47688700 Msa1197380:five_prime_UTR 40.0%
! TATGCTAACTTGTGCCCTTA+GGG + chr8_1:47688682-47688701 Msa1197380:five_prime_UTR 40.0%
ATTCTCATCTTGTGCCCTAA+GGG - chr8_1:47688699-47688718 None:intergenic 40.0%
! CTTACTAACTTGTGCCCTAA+GGG - chr8_1:47688841-47688860 None:intergenic 40.0%
! TCTTACTAACTTGTGCCCTA+AGG - chr8_1:47688842-47688861 None:intergenic 40.0%
GCTAGTTGTAGGTAAGTACA+AGG - chr8_1:47689453-47689472 None:intergenic 40.0%
! ATGTTTGAAGCATGCGAAAG+AGG + chr8_1:47690001-47690020 Msa1197380:intron 40.0%
!! AAATCCAAAGGGCGTTTAGA+AGG + chr8_1:47690037-47690056 Msa1197380:intron 40.0%
AAAACCTTCTAAACGCCCTT+TGG - chr8_1:47690044-47690063 None:intergenic 40.0%
! TGTTTTCCTCCGCATTTCTT+AGG + chr8_1:47690320-47690339 Msa1197380:intron 40.0%
TATGTACCTAAGAAATGCGG+AGG - chr8_1:47690329-47690348 None:intergenic 40.0%
CTTGCGATCTCAACTTAACA+TGG + chr8_1:47690777-47690796 Msa1197380:intron 40.0%
GGTAAGATTATGATTAGGGG+TGG - chr8_1:47690805-47690824 None:intergenic 40.0%
CTACGTATAGCTTATCTGCA+TGG - chr8_1:47691046-47691065 None:intergenic 40.0%
ACTTACTTGTCGTCATAAGC+TGG - chr8_1:47691095-47691114 None:intergenic 40.0%
! TTTGAGATGCTTGCAATGTC+TGG + chr8_1:47691577-47691596 Msa1197380:exon 40.0%
! GATTGCTCATGGACTACAAT+TGG + chr8_1:47691599-47691618 Msa1197380:CDS 40.0%
TCCTTACACTGTTGCCAAAA+TGG + chr8_1:47691771-47691790 Msa1197380:CDS 40.0%
!! TCCATTTTGGCAACAGTGTA+AGG - chr8_1:47691775-47691794 None:intergenic 40.0%
TTACACTGTTGCCAAAATGG+AGG + chr8_1:47691774-47691793 Msa1197380:CDS 40.0%
! GATTTCCTGTTCCTCCATTT+TGG - chr8_1:47691788-47691807 None:intergenic 40.0%
!!! CTAGTTTTGGTGCAACACTA+AGG + chr8_1:47691979-47691998 Msa1197380:intron 40.0%
GTGCAACACTAAGGTTACTT+AGG + chr8_1:47691988-47692007 Msa1197380:intron 40.0%
! CAATTGTTTAGGGCGAATTC+AGG - chr8_1:47692103-47692122 None:intergenic 40.0%
!! CAGGATATGAGTTCGAGTTT+TGG - chr8_1:47692158-47692177 None:intergenic 40.0%
CATTAGGCAAAGTTTGAGGA+GGG - chr8_1:47692301-47692320 None:intergenic 40.0%
TCATTAGGCAAAGTTTGAGG+AGG - chr8_1:47692302-47692321 None:intergenic 40.0%
CTCTCATTAGGCAAAGTTTG+AGG - chr8_1:47692305-47692324 None:intergenic 40.0%
CTCTTCATCAACAGGTTGTT+AGG + chr8_1:47692378-47692397 Msa1197380:intron 40.0%
TCCTTAATGGGACACTTCTT+GGG - chr8_1:47692475-47692494 None:intergenic 40.0%
!! CTGCTTTTGGACTCCTTAAT+GGG - chr8_1:47692487-47692506 None:intergenic 40.0%
!! TCTGCTTTTGGACTCCTTAA+TGG - chr8_1:47692488-47692507 None:intergenic 40.0%
ATTAAGGAGTCCAAAAGCAG+AGG + chr8_1:47692487-47692506 Msa1197380:CDS 40.0%
AGCAAGGATATGGTAAAACG+TGG + chr8_1:47692515-47692534 Msa1197380:CDS 40.0%
! AAAACGTGGATTTCGGTTTG+TGG + chr8_1:47692529-47692548 Msa1197380:CDS 40.0%
! AAACGTGGATTTCGGTTTGT+GGG + chr8_1:47692530-47692549 Msa1197380:CDS 40.0%
GTTAGTTAGATATGCCTCCA+AGG - chr8_1:47692656-47692675 None:intergenic 40.0%
!!! GTGCTTTTTTGCAGCCCAAT+AGG - chr8_1:47688370-47688389 None:intergenic 45.0%
! GGGAATTGAAAAGGTGCAAC+TGG + chr8_1:47688590-47688609 Msa1197380:five_prime_UTR 45.0%
GATTCTCATCTTGTGCCCTA+AGG - chr8_1:47688700-47688719 None:intergenic 45.0%
TCTTATCTTGTGCTGCCCTT+AGG + chr8_1:47688823-47688842 Msa1197380:intron 45.0%
CTTATCTTGTGCTGCCCTTA+GGG + chr8_1:47688824-47688843 Msa1197380:intron 45.0%
TCATATTGCGGTCACAATCG+CGG - chr8_1:47688892-47688911 None:intergenic 45.0%
TTCGGAACACACGAAAGACA+TGG + chr8_1:47690217-47690236 Msa1197380:intron 45.0%
TCGGAACACACGAAAGACAT+GGG + chr8_1:47690218-47690237 Msa1197380:intron 45.0%
TGCAATGTCTGGATTGCTCA+TGG + chr8_1:47691588-47691607 Msa1197380:CDS 45.0%
TGTTGCCAAAATGGAGGAAC+AGG + chr8_1:47691780-47691799 Msa1197380:CDS 45.0%
AGGTTACTTAGGTATGGCCA+TGG + chr8_1:47691999-47692018 Msa1197380:intron 45.0%
GGTTACTTAGGTATGGCCAT+GGG + chr8_1:47692000-47692019 Msa1197380:intron 45.0%
GTTACTTAGGTATGGCCATG+GGG + chr8_1:47692001-47692020 Msa1197380:intron 45.0%
GAATGCCGAAGAATGTGATG+TGG + chr8_1:47692210-47692229 Msa1197380:intron 45.0%
TAGGGCAAGAGACTCTCATT+AGG - chr8_1:47692317-47692336 None:intergenic 45.0%
TAATGAGAGTCTCTTGCCCT+AGG + chr8_1:47692316-47692335 Msa1197380:intron 45.0%
CAACAGGTTGTTAGGGAATG+TGG + chr8_1:47692386-47692405 Msa1197380:intron 45.0%
!! ACCCAAGAAGTGTCCCATTA+AGG + chr8_1:47692471-47692490 Msa1197380:CDS 45.0%
CTCCTTAATGGGACACTTCT+TGG - chr8_1:47692476-47692495 None:intergenic 45.0%
! TTGCTTAGAGCCTCTGCTTT+TGG - chr8_1:47692500-47692519 None:intergenic 45.0%
!! AAAAGCAGAGGCTCTAAGCA+AGG + chr8_1:47692499-47692518 Msa1197380:CDS 45.0%
!! AGAGGCTCTAAGCAAGGATA+TGG + chr8_1:47692505-47692524 Msa1197380:CDS 45.0%
! CACTCTTTTATGCAAGCTGC+AGG + chr8_1:47692566-47692585 Msa1197380:CDS 45.0%
TAAGCCTAGCAGAAAGACCT+TGG + chr8_1:47692636-47692655 Msa1197380:CDS 45.0%
!!! AATAATTAATATGTAATTTT+TGG + chr8_1:47691145-47691164 Msa1197380:intron 5.0%
AAGTCCACTAGTGACCACTG+AGG + chr8_1:47688564-47688583 Msa1197380:five_prime_UTR 50.0%
TTTCAATTCCCCAGCCTCAG+TGG - chr8_1:47688581-47688600 None:intergenic 50.0%
CTGAGGCTGGGGAATTGAAA+AGG + chr8_1:47688581-47688600 Msa1197380:five_prime_UTR 50.0%
CGGAACACACGAAAGACATG+GGG + chr8_1:47690219-47690238 Msa1197380:intron 50.0%
CACTAGTGACCACTGAGGCT+GGG + chr8_1:47688569-47688588 Msa1197380:five_prime_UTR 55.0%
ACTAGTGACCACTGAGGCTG+GGG + chr8_1:47688570-47688589 Msa1197380:five_prime_UTR 55.0%
ACTTAGGTATGGCCATGGGG+CGG + chr8_1:47692004-47692023 Msa1197380:intron 55.0%
AAGTGAGAAAACCCGCCCCA+TGG - chr8_1:47692019-47692038 None:intergenic 55.0%
GCCTAGCAGAAAGACCTTGG+AGG + chr8_1:47692639-47692658 Msa1197380:CDS 55.0%
GCCTCCAAGGTCTTTCTGCT+AGG - chr8_1:47692643-47692662 None:intergenic 55.0%
CCAGCCTCAGTGGTCACTAG+TGG - chr8_1:47688571-47688590 None:intergenic 60.0%
CCACTAGTGACCACTGAGGC+TGG + chr8_1:47688568-47688587 Msa1197380:five_prime_UTR 60.0%
CTTAGGTATGGCCATGGGGC+GGG + chr8_1:47692005-47692024 Msa1197380:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47688205 47692968 47688205 ID=Msa1197380;Name=Msa1197380
chr8_1 mRNA 47688205 47692968 47688205 ID=Msa1197380-mRNA-1;Parent=Msa1197380;Name=Msa1197380-mRNA-1;_AED=0.18;_eAED=0.18;_QI=648|1|1|1|0.75|0.6|5|298|163
chr8_1 exon 47688205 47688783 47688205 ID=Msa1197380-mRNA-1:exon:15145;Parent=Msa1197380-mRNA-1
chr8_1 exon 47691053 47691108 47691053 ID=Msa1197380-mRNA-1:exon:15146;Parent=Msa1197380-mRNA-1
chr8_1 exon 47691570 47691653 47691570 ID=Msa1197380-mRNA-1:exon:15147;Parent=Msa1197380-mRNA-1
chr8_1 exon 47691750 47691891 47691750 ID=Msa1197380-mRNA-1:exon:15148;Parent=Msa1197380-mRNA-1
chr8_1 exon 47692392 47692968 47692392 ID=Msa1197380-mRNA-1:exon:15149;Parent=Msa1197380-mRNA-1
chr8_1 five_prime_UTR 47688205 47688783 47688205 ID=Msa1197380-mRNA-1:five_prime_utr;Parent=Msa1197380-mRNA-1
chr8_1 five_prime_UTR 47691053 47691108 47691053 ID=Msa1197380-mRNA-1:five_prime_utr;Parent=Msa1197380-mRNA-1
chr8_1 five_prime_UTR 47691570 47691582 47691570 ID=Msa1197380-mRNA-1:five_prime_utr;Parent=Msa1197380-mRNA-1
chr8_1 CDS 47691583 47691653 47691583 ID=Msa1197380-mRNA-1:cds;Parent=Msa1197380-mRNA-1
chr8_1 CDS 47691750 47691891 47691750 ID=Msa1197380-mRNA-1:cds;Parent=Msa1197380-mRNA-1
chr8_1 CDS 47692392 47692670 47692392 ID=Msa1197380-mRNA-1:cds;Parent=Msa1197380-mRNA-1
chr8_1 three_prime_UTR 47692671 47692968 47692671 ID=Msa1197380-mRNA-1:three_prime_utr;Parent=Msa1197380-mRNA-1
Gene Sequence

>Msa1197380

ATGCTTGCAATGTCTGGATTGCTCATGGACTACAATTGGACAGAAATTATAAAAAGAAGGGAACCACTTAGAGAAGTTTTTGCTGGATTTGATCCTTACACTGTTGCCAAAATGGAGGAACAGGAAATCATAGAGATAACATCAAACAAAGCACTTTCTTTAGCTGATAGCAGAGTTATGTGCATTGTTGACAATGCCAAATGCATAATGAAGGTTGTTAGGGAATGTGGATCATTTAGTAGCTACATATGGAGTTTTGTAAATCATAAACCAATAATTAACAAATACAAATACCCAAGAAGTGTCCCATTAAGGAGTCCAAAAGCAGAGGCTCTAAGCAAGGATATGGTAAAACGTGGATTTCGGTTTGTGGGACCAGTGATAGTGCACTCTTTTATGCAAGCTGCAGGATTGACCATTGATCATCTTGTGGATTGTTATAGACATAGTGAATGTGTAAGCCTAGCAGAAAGACCTTGGAGGCATATCTAA
Protein sequence

>Msa1197380

MLAMSGLLMDYNWTEIIKRREPLREVFAGFDPYTVAKMEEQEIIEITSNKALSLADSRVMCIVDNAKCIMKVVRECGSFSSYIWSFVNHKPIINKYKYPRSVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLVDCYRHSECVSLAERPWRHI*