Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327650 | sp|P44321|3MGA_HAEIN | 42.222 | 180 | 100 | 3 | 116 | 294 | 4 | 180 | 1.33e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327650 | A0A396GM12 | 96.825 | 315 | 6 | 2 | 1 | 311 | 1 | 315 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629600 | Msa1327650 | 0.811186 | 7.940594e-51 | -8.615850e-47 |
| Msa0642950 | Msa1327650 | 0.823275 | 1.512019e-53 | -8.615850e-47 |
| Msa0667370 | Msa1327650 | 0.824121 | 9.583620e-54 | -8.615850e-47 |
| Msa0818710 | Msa1327650 | 0.819359 | 1.210328e-52 | -8.615850e-47 |
| Msa0174450 | Msa1327650 | 0.814574 | 1.437679e-51 | -8.615850e-47 |
| Msa0193850 | Msa1327650 | 0.809261 | 2.064706e-50 | -8.615850e-47 |
| Msa0199960 | Msa1327650 | 0.839515 | 1.513242e-57 | -8.615850e-47 |
| Msa0235710 | Msa1327650 | 0.811868 | 5.646101e-51 | -8.615850e-47 |
| Msa1227990 | Msa1327650 | 0.811340 | 7.352094e-51 | -8.615850e-47 |
| Msa1250820 | Msa1327650 | 0.831108 | 2.011657e-55 | -8.615850e-47 |
| Msa1264570 | Msa1327650 | 0.804429 | 2.169672e-49 | -8.615850e-47 |
| Msa1291520 | Msa1327650 | 0.840981 | 6.265872e-58 | -8.615850e-47 |
| Msa1327650 | Msa1336610 | 0.827300 | 1.688440e-54 | -8.615850e-47 |
| Msa1327650 | Msa1340700 | 0.847795 | 9.226691e-60 | -8.615850e-47 |
| Msa1327650 | Msa1430750 | 0.819853 | 9.336302e-53 | -8.615850e-47 |
| Msa1327650 | Msa1436420 | 0.833283 | 5.828749e-56 | -8.615850e-47 |
| Msa1327650 | Msa1445050 | 0.825946 | 3.552371e-54 | -8.615850e-47 |
| Msa1327650 | Msa1446110 | 0.827006 | 1.984849e-54 | -8.615850e-47 |
| Msa0389500 | Msa1327650 | 0.825801 | 3.844102e-54 | -8.615850e-47 |
| Msa0392380 | Msa1327650 | 0.839586 | 1.450369e-57 | -8.615850e-47 |
| Msa0440320 | Msa1327650 | 0.831290 | 1.815309e-55 | -8.615850e-47 |
| Msa1037550 | Msa1327650 | 0.840408 | 8.851287e-58 | -8.615850e-47 |
| Msa0243600 | Msa1327650 | 0.828192 | 1.030423e-54 | -8.615850e-47 |
| Msa0274440 | Msa1327650 | 0.815483 | 9.032602e-52 | -8.615850e-47 |
| Msa0282220 | Msa1327650 | 0.839953 | 1.163786e-57 | -8.615850e-47 |
| Msa0314170 | Msa1327650 | 0.853715 | 1.989715e-61 | -8.615850e-47 |
| Msa1130430 | Msa1327650 | 0.818182 | 2.240296e-52 | -8.615850e-47 |
| Msa1197380 | Msa1327650 | 0.803129 | 4.039430e-49 | -8.615850e-47 |
| Msa1222590 | Msa1327650 | 0.819468 | 1.143075e-52 | -8.615850e-47 |
| Msa0487500 | Msa1327650 | 0.825507 | 4.514760e-54 | -8.615850e-47 |
| Msa0546800 | Msa1327650 | 0.816546 | 5.229554e-52 | -8.615850e-47 |
| Msa0589690 | Msa1327650 | 0.813148 | 2.963101e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327650 | MtrunA17_Chr8g0366071 | 96.825 | 315 | 6 | 2 | 1 | 311 | 1 | 315 | 0.0 | 627 |
| Msa1327650 | MtrunA17_Chr5g0420791 | 67.308 | 312 | 97 | 4 | 1 | 311 | 1 | 308 | 5.15e-144 | 408 |
| Msa1327650 | MtrunA17_Chr4g0073991 | 52.880 | 191 | 90 | 0 | 115 | 305 | 148 | 338 | 1.91e-76 | 238 |
| Msa1327650 | MtrunA17_Chr4g0001371 | 51.337 | 187 | 91 | 0 | 115 | 301 | 137 | 323 | 1.83e-72 | 228 |
| Msa1327650 | MtrunA17_Chr2g0309681 | 48.309 | 207 | 96 | 2 | 98 | 304 | 193 | 388 | 3.62e-70 | 223 |
| Msa1327650 | MtrunA17_Chr8g0356301 | 48.438 | 192 | 97 | 1 | 113 | 304 | 193 | 382 | 1.10e-68 | 218 |
| Msa1327650 | MtrunA17_Chr3g0141411 | 47.208 | 197 | 101 | 2 | 105 | 300 | 120 | 314 | 5.18e-65 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327650 | AT1G13635.2 | 62.745 | 306 | 111 | 3 | 7 | 311 | 8 | 311 | 1.05e-130 | 374 |
| Msa1327650 | AT1G13635.1 | 62.745 | 306 | 111 | 3 | 7 | 311 | 8 | 311 | 1.05e-130 | 374 |
| Msa1327650 | AT1G75090.1 | 51.020 | 196 | 96 | 0 | 111 | 306 | 115 | 310 | 1.07e-74 | 233 |
| Msa1327650 | AT5G57970.1 | 51.042 | 192 | 94 | 0 | 115 | 306 | 154 | 345 | 3.47e-74 | 232 |
| Msa1327650 | AT5G57970.2 | 51.042 | 192 | 94 | 0 | 115 | 306 | 154 | 345 | 3.47e-74 | 232 |
| Msa1327650 | AT5G44680.1 | 50.526 | 190 | 92 | 1 | 115 | 304 | 164 | 351 | 6.12e-71 | 224 |
| Msa1327650 | AT1G15970.1 | 48.168 | 191 | 99 | 0 | 115 | 305 | 145 | 335 | 4.05e-68 | 216 |
| Msa1327650 | AT1G15970.2 | 48.168 | 191 | 99 | 0 | 115 | 305 | 145 | 335 | 4.05e-68 | 216 |
| Msa1327650 | AT1G80850.1 | 45.550 | 191 | 104 | 0 | 115 | 305 | 134 | 324 | 2.34e-65 | 208 |
| Msa1327650 | AT3G12710.1 | 42.795 | 229 | 127 | 3 | 81 | 307 | 86 | 312 | 9.15e-64 | 204 |
Find 61 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTAGAGCCTCTGCTTT+TGG | 0.204125 | 8_4:+44969673 | None:intergenic |
| GATTTCCTGTTCCTCCATTT+TGG | 0.208004 | 8_4:+44970402 | None:intergenic |
| TCCTTACACTGTTGCCAAAA+TGG | 0.236844 | 8_4:-44970416 | Msa1327650:CDS |
| TATTTGTATTTGTTAATTAT+TGG | 0.253663 | 8_4:+44969721 | None:intergenic |
| CTCCTTAATGGGACACTTCT+TGG | 0.263263 | 8_4:+44969697 | None:intergenic |
| AAAGTACAAGCGATGAAAAT+TGG | 0.290448 | 8_4:+44969404 | None:intergenic |
| ATCTTCATCAACAGGTTGTT+AGG | 0.301024 | 8_4:-44969792 | Msa1327650:intron |
| ACCCAAGAAGTGTCCCATTA+AGG | 0.321221 | 8_4:-44969699 | Msa1327650:CDS |
| AGCTGATTCTTTGACTCCAT+TGG | 0.322748 | 8_4:-44973875 | Msa1327650:CDS |
| ATTTACCTTCATTATGCATT+TGG | 0.335454 | 8_4:+44970312 | None:intergenic |
| ACATGGTAAAACGTGGATTT+CGG | 0.376776 | 8_4:-44969648 | Msa1327650:CDS |
| TTTGAGATGCTTGCAATGTC+TGG | 0.382865 | 8_4:-44970610 | Msa1327650:CDS |
| TCCTTAATGGGACACTTCTT+GGG | 0.390688 | 8_4:+44969698 | None:intergenic |
| TTCAAGAAAGTGTACCCTAT+TGG | 0.391313 | 8_4:-44973976 | Msa1327650:CDS |
| GGGAATTGAAAAGGTGCAAC+TGG | 0.406093 | 8_4:-44973741 | Msa1327650:CDS |
| CTTTGACTCCATTGGATGAA+AGG | 0.411007 | 8_4:-44973867 | Msa1327650:CDS |
| TAGAATTTCATGATGAATGC+TGG | 0.424817 | 8_4:-44971069 | Msa1327650:CDS |
| TGTTGCCAAAATGGAGGAAC+AGG | 0.430065 | 8_4:-44970407 | Msa1327650:CDS |
| GATTGCTCATGGACTACAAT+TGG | 0.434181 | 8_4:-44970588 | Msa1327650:CDS |
| AAATGTAAGAAAACAAGCTT+TGG | 0.439042 | 8_4:-44974064 | Msa1327650:CDS |
| CCACTAGTGACCACTGAGCC+TGG | 0.440893 | 8_4:-44973763 | Msa1327650:CDS |
| GGTTGGAATTTATGAAAACT+TGG | 0.444998 | 8_4:+44974163 | None:intergenic |
| TGCAATGTCTGGATTGCTCA+TGG | 0.456628 | 8_4:-44970599 | Msa1327650:CDS |
| CATACAAATTATTACCTAAG+TGG | 0.470871 | 8_4:+44970541 | None:intergenic |
| TCTTCATCAACAGGTTGTTA+GGG | 0.472618 | 8_4:-44969791 | Msa1327650:intron |
| CACTAGTGACCACTGAGCCT+GGG | 0.473846 | 8_4:-44973762 | Msa1327650:CDS |
| GATCATTTAGTAGCTACATA+TGG | 0.478959 | 8_4:-44969762 | Msa1327650:CDS |
| AAAACGTGGATTTCGGTTTG+TGG | 0.483743 | 8_4:-44969641 | Msa1327650:CDS |
| AAACGTGGATTTCGGTTTGT+GGG | 0.497995 | 8_4:-44969640 | Msa1327650:CDS |
| TACAAACAAGTAGTTACAAA+CGG | 0.505820 | 8_4:+44969282 | None:intergenic |
| CCAGGCTCAGTGGTCACTAG+TGG | 0.510661 | 8_4:+44973763 | None:intergenic |
| CTGAGCCTGGGGAATTGAAA+AGG | 0.513333 | 8_4:-44973750 | Msa1327650:CDS |
| AGAATTTCATGATGAATGCT+GGG | 0.513589 | 8_4:-44971068 | Msa1327650:CDS |
| TGGAATTTATGAAAACTTGG+AGG | 0.513809 | 8_4:+44974166 | None:intergenic |
| CAACAGGTTGTTAGGGAATG+TGG | 0.514316 | 8_4:-44969784 | Msa1327650:intron |
| ACTTACTTGTCGTCATAAGC+TGG | 0.516840 | 8_4:+44971040 | None:intergenic |
| ATAAAAGAGTGCACTATCAC+TGG | 0.517350 | 8_4:+44969616 | None:intergenic |
| GCCTCCAAGGTCTTTCTGCT+AGG | 0.519579 | 8_4:+44969530 | None:intergenic |
| ATTGACCATTGATCATCTTG+TGG | 0.520664 | 8_4:-44969581 | Msa1327650:CDS |
| GCAAATTCTCTTCTTTCATG+TGG | 0.527050 | 8_4:+44973811 | None:intergenic |
| GGAATTTATGAAAACTTGGA+GGG | 0.531513 | 8_4:+44974167 | None:intergenic |
| ACAATCCACAAGATGATCAA+TGG | 0.535979 | 8_4:+44969576 | None:intergenic |
| CAATGCCAAATGCATAATGA+AGG | 0.541462 | 8_4:-44970317 | Msa1327650:intron |
| TAAGCCTAGCAGAAAGACCT+TGG | 0.551983 | 8_4:-44969534 | Msa1327650:CDS |
| GATGAAATCCTTTCATCCAA+TGG | 0.555797 | 8_4:+44973859 | None:intergenic |
| AGATAGATGCTGAAGTTGGT+TGG | 0.569429 | 8_4:+44974146 | None:intergenic |
| CAAAACCAAATTGAAAATTG+TGG | 0.576016 | 8_4:+44969480 | None:intergenic |
| AATGAGATAGATGCTGAAGT+TGG | 0.584360 | 8_4:+44974142 | None:intergenic |
| GCCTAGCAGAAAGACCTTGG+AGG | 0.593814 | 8_4:-44969531 | Msa1327650:CDS |
| GATTTGACAAGTACAAGGAA+TGG | 0.594977 | 8_4:+44969367 | None:intergenic |
| AAAAGCAGAGGCTCTAAGCA+AGG | 0.611659 | 8_4:-44969671 | Msa1327650:CDS |
| ATATAGATTTGACAAGTACA+AGG | 0.624872 | 8_4:+44969362 | None:intergenic |
| TTTCAATTCCCCAGGCTCAG+TGG | 0.626365 | 8_4:+44973753 | None:intergenic |
| ACTAGTGACCACTGAGCCTG+GGG | 0.626508 | 8_4:-44973761 | Msa1327650:CDS |
| GTTAGTTAGATATGCCTCCA+AGG | 0.629114 | 8_4:+44969517 | None:intergenic |
| TAAGAAAACAAGCTTTGGAG+AGG | 0.633132 | 8_4:-44974059 | Msa1327650:CDS |
| AGAGGCTCTAAGCAAGGACA+TGG | 0.646875 | 8_4:-44969665 | Msa1327650:CDS |
| TTACACTGTTGCCAAAATGG+AGG | 0.656370 | 8_4:-44970413 | Msa1327650:CDS |
| ATTAAGGAGTCCAAAAGCAG+AGG | 0.668988 | 8_4:-44969683 | Msa1327650:CDS |
| AGCAAGGACATGGTAAAACG+TGG | 0.674831 | 8_4:-44969655 | Msa1327650:CDS |
| GAATTTCATGATGAATGCTG+GGG | 0.685294 | 8_4:-44971067 | Msa1327650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTTTTTTTTTTTTTT+TGG | - | chr8_4:44970070-44970089 | Msa1327650:intron | 0.0% |
| !!! | ATTTTTTTTTTTTTTTTTTT+GGG | - | chr8_4:44970071-44970090 | Msa1327650:intron | 0.0% |
| !! | AAAAAAATTAAAATATAATA+TGG | + | chr8_4:44972479-44972498 | None:intergenic | 0.0% |
| !! | ATTTATATATGCTTATATTA+AGG | - | chr8_4:44970034-44970053 | Msa1327650:intron | 10.0% |
| !! | TAATAAAAATAAAAATGCAT+CGG | - | chr8_4:44970622-44970641 | Msa1327650:intron | 10.0% |
| !! | AAAAATGATAAATTTAATCA+TGG | + | chr8_4:44971403-44971422 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTCTATTTTTTT+AGG | - | chr8_4:44971515-44971534 | Msa1327650:intron | 10.0% |
| !!! | AAAAATTCTCTATTTTTTTA+GGG | - | chr8_4:44971516-44971535 | Msa1327650:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAGTTTA+AGG | + | chr8_4:44972005-44972024 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTTAGGA+AGG | + | chr8_4:44972200-44972219 | None:intergenic | 10.0% |
| !! | AATAATTAATATATGATGTT+TGG | - | chr8_4:44972423-44972442 | Msa1327650:intron | 10.0% |
| !! | CTAAATAGATATAAATTAAT+AGG | + | chr8_4:44972709-44972728 | None:intergenic | 10.0% |
| !!! | TATTTGTATTTGTTAATTAT+TGG | + | chr8_4:44973692-44973711 | None:intergenic | 10.0% |
| !!! | TTTTATTATGGAAGAAATTT+TGG | + | chr8_4:44969412-44969431 | None:intergenic | 15.0% |
| !!! | TCAAAATTATTTTAGCAAAA+TGG | + | chr8_4:44970005-44970024 | None:intergenic | 15.0% |
| !!! | TTTGCTAAAATAATTTTGAT+TGG | - | chr8_4:44970006-44970025 | Msa1327650:intron | 15.0% |
| !!! | AAAAAAAAAATTGGTTGTTT+TGG | - | chr8_4:44970364-44970383 | Msa1327650:CDS | 15.0% |
| !!! | AAAAAAAAATTGGTTGTTTT+GGG | - | chr8_4:44970365-44970384 | Msa1327650:CDS | 15.0% |
| !!! | AAATAATTTAAAACTGAAAG+TGG | + | chr8_4:44970661-44970680 | None:intergenic | 15.0% |
| !!! | TTTTTAGTAAATTTAGTTCT+TGG | + | chr8_4:44970876-44970895 | None:intergenic | 15.0% |
| !!! | AGTAATTTTTTTTTTTTTGG+TGG | + | chr8_4:44970904-44970923 | None:intergenic | 15.0% |
| !!! | TAAAATTACTTTGTTATGTT+CGG | + | chr8_4:44971137-44971156 | None:intergenic | 15.0% |
| !!! | AAAAATATGAAATTGCATTT+TGG | + | chr8_4:44971217-44971236 | None:intergenic | 15.0% |
| !!! | GTTATTAATAGACTTTAAAA+TGG | - | chr8_4:44971641-44971660 | Msa1327650:intron | 15.0% |
| !! | TATAATTTCATTGATCATTT+AGG | - | chr8_4:44971835-44971854 | Msa1327650:intron | 15.0% |
| !! | TTATATCTATTTAGATACAT+AGG | - | chr8_4:44972715-44972734 | Msa1327650:intron | 15.0% |
| !!! | CAAATTATAACTTTTTTACA+TGG | - | chr8_4:44972893-44972912 | Msa1327650:intron | 15.0% |
| !! | AAAAAAAAGTGAAATTGATA+TGG | + | chr8_4:44973131-44973150 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTGAGTTTAGA+AGG | - | chr8_4:44973180-44973199 | Msa1327650:intron | 15.0% |
| !!! | TTTTTTGTTTCATTTATTGA+TGG | + | chr8_4:44974079-44974098 | None:intergenic | 15.0% |
| !! | ATAAATGAAACAAAAAAGAA+AGG | - | chr8_4:44974082-44974101 | Msa1327650:exon | 15.0% |
| !!! | CTTTCTTGAAGATTTTATTA+TGG | + | chr8_4:44969424-44969443 | None:intergenic | 20.0% |
| !! | TATAATGAAATGATATTGCA+TGG | + | chr8_4:44969730-44969749 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTTTCTTCTACAT+TGG | - | chr8_4:44969783-44969802 | Msa1327650:intron | 20.0% |
| !!! | TTTGTTTTTTCTTCTACATT+GGG | - | chr8_4:44969784-44969803 | Msa1327650:intron | 20.0% |
| !! | TAAGATTGAATATATATGCA+TGG | - | chr8_4:44969809-44969828 | Msa1327650:intron | 20.0% |
| !! | GCTTTCTTCAAAAAAAAAAT+TGG | - | chr8_4:44970355-44970374 | Msa1327650:CDS | 20.0% |
| !! | TAATACAATTAATGCTAAGT+TGG | + | chr8_4:44970518-44970537 | None:intergenic | 20.0% |
| !! | AGTGTTTCAAAAATAATTTG+TGG | - | chr8_4:44970734-44970753 | Msa1327650:intron | 20.0% |
| !! | CTCACTTATAATTTATTCTT+GGG | + | chr8_4:44970838-44970857 | None:intergenic | 20.0% |
| !!! | CAAATTGACGTTTTTTTTTT+TGG | - | chr8_4:44970985-44971004 | Msa1327650:intron | 20.0% |
| !! | AAAATAAAGAGTGACTAATA+TGG | + | chr8_4:44971562-44971581 | None:intergenic | 20.0% |
| !! | ATACGCTATTATGTTATATT+AGG | - | chr8_4:44971915-44971934 | Msa1327650:intron | 20.0% |
| !! | ATAACATGTCAAAAAGTTTA+AGG | + | chr8_4:44972036-44972055 | None:intergenic | 20.0% |
| !! | AAATTGGTAAGATATGATTA+GGG | + | chr8_4:44972096-44972115 | None:intergenic | 20.0% |
| !! | AAAATTGGTAAGATATGATT+AGG | + | chr8_4:44972097-44972116 | None:intergenic | 20.0% |
| !!! | TTTTTGTCTTCTTAGAAAAT+TGG | + | chr8_4:44972112-44972131 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTAGGAAGGAA+AGG | + | chr8_4:44972195-44972214 | None:intergenic | 20.0% |
| !!! | TATAACATAAAAGTGTTGAA+CGG | + | chr8_4:44972404-44972423 | None:intergenic | 20.0% |
| !! | AATAAATGTATTCCAGAATA+AGG | - | chr8_4:44972547-44972566 | Msa1327650:intron | 20.0% |
| !!! | GATGTTAACATTTGAAATTT+TGG | - | chr8_4:44972626-44972645 | Msa1327650:intron | 20.0% |
| !! | GACAGAAATTATAAAAAGAA+GGG | - | chr8_4:44972844-44972863 | Msa1327650:intron | 20.0% |
| !!! | AAATTTTTATTTTGGAGACA+AGG | + | chr8_4:44973294-44973313 | None:intergenic | 20.0% |
| !! | TGTCTCCAAAATAAAAATTT+AGG | - | chr8_4:44973294-44973313 | Msa1327650:intron | 20.0% |
| !!! | GAATGCCTAAATTTTTATTT+TGG | + | chr8_4:44973302-44973321 | None:intergenic | 20.0% |
| !! | TATACTCAAACAATTGTTTA+GGG | + | chr8_4:44973337-44973356 | None:intergenic | 20.0% |
| !! | ATATACTCAAACAATTGTTT+AGG | + | chr8_4:44973338-44973357 | None:intergenic | 20.0% |
| !!! | ATTTCTAAAACACAACTTAT+CGG | - | chr8_4:44973473-44973492 | Msa1327650:intron | 20.0% |
| ! | AAATGTAAGAAAACAAGCTT+TGG | - | chr8_4:44969346-44969365 | Msa1327650:three_prime_UTR | 25.0% |
| !!! | ATATGCATGGTTTTAGAAAA+TGG | - | chr8_4:44969822-44969841 | Msa1327650:intron | 25.0% |
| !! | GCTAAAAATATCTGTTTTCA+GGG | + | chr8_4:44970243-44970262 | None:intergenic | 25.0% |
| !! | TGCTAAAAATATCTGTTTTC+AGG | + | chr8_4:44970244-44970263 | None:intergenic | 25.0% |
| ! | TACATATCATGTCCATTAAT+TGG | - | chr8_4:44970323-44970342 | Msa1327650:CDS | 25.0% |
| !! | AATTTAAAACTGAAAGTGGT+AGG | + | chr8_4:44970657-44970676 | None:intergenic | 25.0% |
| ! | CCTCACTTATAATTTATTCT+TGG | + | chr8_4:44970839-44970858 | None:intergenic | 25.0% |
| ! | CCAAGAATAAATTATAAGTG+AGG | - | chr8_4:44970836-44970855 | Msa1327650:intron | 25.0% |
| !! | GACATTTTTGTACTTTCATT+AGG | + | chr8_4:44971028-44971047 | None:intergenic | 25.0% |
| ! | TACTACAATCCAAAAATTGA+GGG | + | chr8_4:44971050-44971069 | None:intergenic | 25.0% |
| ! | TCTCTTGTGTCAAAAAATTA+TGG | + | chr8_4:44971244-44971263 | None:intergenic | 25.0% |
| !!! | TTCAGATTCTAAAATCCAAA+GGG | - | chr8_4:44971288-44971307 | Msa1327650:intron | 25.0% |
| !!! | CTTCAGATTTTTTACATGTT+TGG | + | chr8_4:44971351-44971370 | None:intergenic | 25.0% |
| !! | AAAAAAAAAGTAGTTAGCCT+CGG | - | chr8_4:44971372-44971391 | Msa1327650:intron | 25.0% |
| !! | TGAAAATCGAATGACATTTT+TGG | - | chr8_4:44971460-44971479 | Msa1327650:intron | 25.0% |
| !!! | GAATGACATTTTTGGATTTT+CGG | - | chr8_4:44971468-44971487 | Msa1327650:intron | 25.0% |
| !!! | CTCTATTTTTTTAGGGAAAT+AGG | - | chr8_4:44971523-44971542 | Msa1327650:intron | 25.0% |
| ! | AATTGGTAAGATATGATTAG+GGG | + | chr8_4:44972095-44972114 | None:intergenic | 25.0% |
| ! | TAATCTAAGTTTAGACCAAT+CGG | + | chr8_4:44972235-44972254 | None:intergenic | 25.0% |
| ! | ACATCAAAATTAGTTATACG+TGG | + | chr8_4:44972300-44972319 | None:intergenic | 25.0% |
| !!! | CTTTGATTTTCAGATAGATT+GGG | - | chr8_4:44972603-44972622 | Msa1327650:intron | 25.0% |
| !!! | TTTGATTTTCAGATAGATTG+GGG | - | chr8_4:44972604-44972623 | Msa1327650:intron | 25.0% |
| ! | GGACAGAAATTATAAAAAGA+AGG | - | chr8_4:44972843-44972862 | Msa1327650:intron | 25.0% |
| ! | CATACAAATTATTACCTAAG+TGG | + | chr8_4:44972872-44972891 | None:intergenic | 25.0% |
| ! | ATTTACCTTCATTATGCATT+TGG | + | chr8_4:44973101-44973120 | None:intergenic | 25.0% |
| !!! | AGACAAGGTTTAGTTTTTTA+GGG | + | chr8_4:44973279-44973298 | None:intergenic | 25.0% |
| !!! | TGTGAAAAATCTAGTTTTAC+AGG | + | chr8_4:44973403-44973422 | None:intergenic | 25.0% |
| ! | AAGTAAAAAAACACAACCTA+GGG | + | chr8_4:44973561-44973580 | None:intergenic | 25.0% |
| ! | AAAGTAAAAAAACACAACCT+AGG | + | chr8_4:44973562-44973581 | None:intergenic | 25.0% |
| ! | CAAAACCAAATTGAAAATTG+TGG | + | chr8_4:44973933-44973952 | None:intergenic | 25.0% |
| ! | ATATAGATTTGACAAGTACA+AGG | + | chr8_4:44974051-44974070 | None:intergenic | 25.0% |
| ! | TACAAACAAGTAGTTACAAA+CGG | + | chr8_4:44974131-44974150 | None:intergenic | 25.0% |
| GGAATTTATGAAAACTTGGA+GGG | + | chr8_4:44969246-44969265 | None:intergenic | 30.0% | |
| TGGAATTTATGAAAACTTGG+AGG | + | chr8_4:44969247-44969266 | None:intergenic | 30.0% | |
| GGTTGGAATTTATGAAAACT+TGG | + | chr8_4:44969250-44969269 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAGTCCAATA+GGG | + | chr8_4:44969451-44969470 | None:intergenic | 30.0% |
| AACTGGATCACAAAAAATAG+TGG | - | chr8_4:44969686-44969705 | Msa1327650:CDS | 30.0% | |
| GTCAAATATGTCTCATATTG+CGG | + | chr8_4:44969910-44969929 | None:intergenic | 30.0% | |
| CTTGATATTGTGAAAAATCG+CGG | + | chr8_4:44969932-44969951 | None:intergenic | 30.0% | |
| ATATCAAGGATTGCAATGTT+AGG | - | chr8_4:44969944-44969963 | Msa1327650:intron | 30.0% | |
| TATCAAGGATTGCAATGTTA+GGG | - | chr8_4:44969945-44969964 | Msa1327650:intron | 30.0% | |
| ! | TAACAGAGATAATTTGTGCA+GGG | + | chr8_4:44970170-44970189 | None:intergenic | 30.0% |
| AGCTCAAAACAACCAATTAA+TGG | + | chr8_4:44970338-44970357 | None:intergenic | 30.0% | |
| GTGCACAAAAAAAAATCAGA+AGG | - | chr8_4:44970440-44970459 | Msa1327650:CDS | 30.0% | |
| ! | ATTTTGCAATACCAACATAG+TGG | - | chr8_4:44970539-44970558 | Msa1327650:intron | 30.0% |
| ATTAAGTGTAACCACTATGT+TGG | + | chr8_4:44970553-44970572 | None:intergenic | 30.0% | |
| GCTAATTGTAAGTAAGTACA+AGG | + | chr8_4:44970686-44970705 | None:intergenic | 30.0% | |
| AGATCGCATTAATCTCAATA+AGG | - | chr8_4:44970806-44970825 | Msa1327650:intron | 30.0% | |
| ! | CAAAAATGTCCCTCAATTTT+TGG | - | chr8_4:44971038-44971057 | Msa1327650:intron | 30.0% |
| CTACTACAATCCAAAAATTG+AGG | + | chr8_4:44971051-44971070 | None:intergenic | 30.0% | |
| AACCTTTGCTAAAATGACAA+CGG | + | chr8_4:44971102-44971121 | None:intergenic | 30.0% | |
| !! | AATTGCATTTTGGCACAAAA+GGG | + | chr8_4:44971207-44971226 | None:intergenic | 30.0% |
| !! | AAATTGCATTTTGGCACAAA+AGG | + | chr8_4:44971208-44971227 | None:intergenic | 30.0% |
| !! | GTTCAGATTCTAAAATCCAA+AGG | - | chr8_4:44971287-44971306 | Msa1327650:intron | 30.0% |
| AATGAAACAAAAACACGCTT+CGG | - | chr8_4:44971426-44971445 | Msa1327650:intron | 30.0% | |
| ACTAATATGGTGTGAAATTC+GGG | + | chr8_4:44971549-44971568 | None:intergenic | 30.0% | |
| GACTAATATGGTGTGAAATT+CGG | + | chr8_4:44971550-44971569 | None:intergenic | 30.0% | |
| ATGTATGTACCTAAGAAATG+TGG | + | chr8_4:44971601-44971620 | None:intergenic | 30.0% | |
| ! | CTTGATTTTTATGCTCAAGT+CGG | + | chr8_4:44971953-44971972 | None:intergenic | 30.0% |
| CATACAACAACCTATTAAAC+AGG | - | chr8_4:44971973-44971992 | Msa1327650:intron | 30.0% | |
| CTATAGTTGTAAAACAAGTG+TGG | + | chr8_4:44972172-44972191 | None:intergenic | 30.0% | |
| ! | AAACTATAACCTTTTCCGAT+TGG | - | chr8_4:44972217-44972236 | Msa1327650:intron | 30.0% |
| TAGAATTTCATGATGAATGC+TGG | - | chr8_4:44972341-44972360 | Msa1327650:intron | 30.0% | |
| AGAATTTCATGATGAATGCT+GGG | - | chr8_4:44972342-44972361 | Msa1327650:intron | 30.0% | |
| AGAGAATATAACAAAACCTG+AGG | - | chr8_4:44972523-44972542 | Msa1327650:intron | 30.0% | |
| TGGAATACATTTATTTCCTC+AGG | + | chr8_4:44972542-44972561 | None:intergenic | 30.0% | |
| ! | TTTAGTGGTTTTCCTTATTC+TGG | + | chr8_4:44972562-44972581 | None:intergenic | 30.0% |
| AAAACCACTAAATTGTCACA+AGG | - | chr8_4:44972570-44972589 | Msa1327650:intron | 30.0% | |
| CCAATCTATCTGAAAATCAA+AGG | + | chr8_4:44972605-44972624 | None:intergenic | 30.0% | |
| !! | CCTTTGATTTTCAGATAGAT+TGG | - | chr8_4:44972602-44972621 | Msa1327650:intron | 30.0% |
| ACCAATTAAGATGAGATAGT+TGG | + | chr8_4:44972756-44972775 | None:intergenic | 30.0% | |
| ! | TTATGTAGAGAAGTTTTTGC+TGG | - | chr8_4:44972965-44972984 | Msa1327650:intron | 30.0% |
| !!! | TGAGTTTAGAAGGTTAGTTT+TGG | - | chr8_4:44973190-44973209 | Msa1327650:intron | 30.0% |
| !!! | GAGACAAGGTTTAGTTTTTT+AGG | + | chr8_4:44973280-44973299 | None:intergenic | 30.0% |
| ! | AGATTTTTCACATCAAATGC+AGG | - | chr8_4:44973411-44973430 | Msa1327650:intron | 30.0% |
| ! | AGAAGTATAGTTTGCAACTA+TGG | + | chr8_4:44973596-44973615 | None:intergenic | 30.0% |
| GATCATTTAGTAGCTACATA+TGG | - | chr8_4:44973648-44973667 | Msa1327650:intron | 30.0% | |
| ! | CACTACCACAATTTTCAATT+TGG | - | chr8_4:44973925-44973944 | Msa1327650:CDS | 30.0% |
| AAAGTACAAGCGATGAAAAT+TGG | + | chr8_4:44974009-44974028 | None:intergenic | 30.0% | |
| !!! | TCATCGCTTGTACTTTTTTT+TGG | - | chr8_4:44974013-44974032 | Msa1327650:CDS | 30.0% |
| !!! | TGGAGGGTTTTAAATTGAGA+TGG | + | chr8_4:44969230-44969249 | None:intergenic | 35.0% |
| AATGAGATAGATGCTGAAGT+TGG | + | chr8_4:44969271-44969290 | None:intergenic | 35.0% | |
| !! | TAAGAAAACAAGCTTTGGAG+AGG | - | chr8_4:44969351-44969370 | Msa1327650:three_prime_UTR | 35.0% |
| ! | TTCAAGAAAGTGTACCCTAT+TGG | - | chr8_4:44969434-44969453 | Msa1327650:three_prime_UTR | 35.0% |
| !!! | GTGCTTTTTTGAAGTCCAAT+AGG | + | chr8_4:44969452-44969471 | None:intergenic | 35.0% |
| GATGAAATCCTTTCATCCAA+TGG | + | chr8_4:44969554-44969573 | None:intergenic | 35.0% | |
| GCAAATTCTCTTCTTTCATG+TGG | + | chr8_4:44969602-44969621 | None:intergenic | 35.0% | |
| ! | CGCGATTTTTCACAATATCA+AGG | - | chr8_4:44969930-44969949 | Msa1327650:intron | 35.0% |
| !!! | TTTTGGGTTAAGTAACCTAG+TGG | - | chr8_4:44970087-44970106 | Msa1327650:intron | 35.0% |
| AGATTCACACACATTATGTG+TGG | - | chr8_4:44970112-44970131 | Msa1327650:intron | 35.0% | |
| ! | AACAGAGATAATTTGTGCAG+GGG | + | chr8_4:44970169-44970188 | None:intergenic | 35.0% |
| ! | CTAACAGAGATAATTTGTGC+AGG | + | chr8_4:44970171-44970190 | None:intergenic | 35.0% |
| TACCAATTGAGCTACACTTA+AGG | - | chr8_4:44970192-44970211 | Msa1327650:intron | 35.0% | |
| ACCAATTGAGCTACACTTAA+GGG | - | chr8_4:44970193-44970212 | Msa1327650:intron | 35.0% | |
| GCATTAATCTCAATAAGGAG+TGG | - | chr8_4:44970811-44970830 | Msa1327650:intron | 35.0% | |
| !!! | ATCCGTTGTCATTTTAGCAA+AGG | - | chr8_4:44971097-44971116 | Msa1327650:intron | 35.0% |
| !! | ATTGCATTTTGGCACAAAAG+GGG | + | chr8_4:44971206-44971225 | None:intergenic | 35.0% |
| ! | ATGTTTGAAGCATGTGAAAG+AGG | - | chr8_4:44971263-44971282 | Msa1327650:intron | 35.0% |
| ATTTAATCATGGTTGAACCG+AGG | + | chr8_4:44971392-44971411 | None:intergenic | 35.0% | |
| ! | TGTTTTCCTCCACATTTCTT+AGG | - | chr8_4:44971589-44971608 | Msa1327650:intron | 35.0% |
| TATGTACCTAAGAAATGTGG+AGG | + | chr8_4:44971598-44971617 | None:intergenic | 35.0% | |
| AAGGACTAAGCCTGTTTAAT+AGG | + | chr8_4:44971986-44972005 | None:intergenic | 35.0% | |
| AAGTTTAGACCAATCGGAAA+AGG | + | chr8_4:44972229-44972248 | None:intergenic | 35.0% | |
| GAATTTCATGATGAATGCTG+GGG | - | chr8_4:44972343-44972362 | Msa1327650:intron | 35.0% | |
| GCCAACTATCTCATCTTAAT+TGG | - | chr8_4:44972752-44972771 | Msa1327650:intron | 35.0% | |
| TAAAAAGAAGGGAACCACTT+AGG | - | chr8_4:44972855-44972874 | Msa1327650:intron | 35.0% | |
| CAATGCCAAATGCATAATGA+AGG | - | chr8_4:44973093-44973112 | Msa1327650:intron | 35.0% | |
| !!! | TTAGTTTTGGTGCAACACTA+AGG | - | chr8_4:44973203-44973222 | Msa1327650:intron | 35.0% |
| ACACTAAGGTTACTTAGGTA+TGG | - | chr8_4:44973217-44973236 | Msa1327650:intron | 35.0% | |
| !!! | TTTAGTTTTTTAGGGCAAGC+TGG | + | chr8_4:44973271-44973290 | None:intergenic | 35.0% |
| !!! | GAGTTCGAGTTTTGGTTATT+TGG | + | chr8_4:44973376-44973395 | None:intergenic | 35.0% |
| GATATCCACATCACATTCTT+CGG | + | chr8_4:44973444-44973463 | None:intergenic | 35.0% | |
| !! | ACACAACTTATCGGTTTATG+AGG | - | chr8_4:44973482-44973501 | Msa1327650:intron | 35.0% |
| TTGCAACTATGGTGAATTCA+TGG | + | chr8_4:44973585-44973604 | None:intergenic | 35.0% | |
| ACTTCTTGATCTTCATCAAC+AGG | - | chr8_4:44973610-44973629 | Msa1327650:intron | 35.0% | |
| ATCTTCATCAACAGGTTGTT+AGG | - | chr8_4:44973618-44973637 | Msa1327650:intron | 35.0% | |
| TCTTCATCAACAGGTTGTTA+GGG | - | chr8_4:44973619-44973638 | Msa1327650:intron | 35.0% | |
| ACATGGTAAAACGTGGATTT+CGG | - | chr8_4:44973762-44973781 | Msa1327650:CDS | 35.0% | |
| ! | ATAAAAGAGTGCACTATCAC+TGG | + | chr8_4:44973797-44973816 | None:intergenic | 35.0% |
| ATTGACCATTGATCATCTTG+TGG | - | chr8_4:44973829-44973848 | Msa1327650:CDS | 35.0% | |
| ACAATCCACAAGATGATCAA+TGG | + | chr8_4:44973837-44973856 | None:intergenic | 35.0% | |
| !!! | GCTTGTACTTTTTTTTGGAG+AGG | - | chr8_4:44974018-44974037 | Msa1327650:CDS | 35.0% |
| GATTTGACAAGTACAAGGAA+TGG | + | chr8_4:44974046-44974065 | None:intergenic | 35.0% | |
| ! | AGATAGATGCTGAAGTTGGT+TGG | + | chr8_4:44969267-44969286 | None:intergenic | 40.0% |
| ! | AGCTGATTCTTTGACTCCAT+TGG | - | chr8_4:44969535-44969554 | Msa1327650:CDS | 40.0% |
| CTTTGACTCCATTGGATGAA+AGG | - | chr8_4:44969543-44969562 | Msa1327650:CDS | 40.0% | |
| ACACATTATGTGTGGAGAAG+TGG | - | chr8_4:44970120-44970139 | Msa1327650:intron | 40.0% | |
| CACATTATGTGTGGAGAAGT+GGG | - | chr8_4:44970121-44970140 | Msa1327650:intron | 40.0% | |
| ACATTATGTGTGGAGAAGTG+GGG | - | chr8_4:44970122-44970141 | Msa1327650:intron | 40.0% | |
| TCCCTTAAGTGTAGCTCAAT+TGG | + | chr8_4:44970197-44970216 | None:intergenic | 40.0% | |
| GGGGTTTGTAACATGTAAAG+AGG | + | chr8_4:44971187-44971206 | None:intergenic | 40.0% | |
| !! | AAATCCAAAGGGCGTTTAGA+AGG | - | chr8_4:44971299-44971318 | Msa1327650:intron | 40.0% |
| CTTGCGATCTCAACTTAACA+TGG | - | chr8_4:44972064-44972083 | Msa1327650:intron | 40.0% | |
| GGTAAGATATGATTAGGGGT+GGG | + | chr8_4:44972091-44972110 | None:intergenic | 40.0% | |
| TGGTAAGATATGATTAGGGG+TGG | + | chr8_4:44972092-44972111 | None:intergenic | 40.0% | |
| CTACGTATAGCTTATCTGCA+TGG | + | chr8_4:44972324-44972343 | None:intergenic | 40.0% | |
| ACTTACTTGTCGTCATAAGC+TGG | + | chr8_4:44972373-44972392 | None:intergenic | 40.0% | |
| CCATCCTTGTGACAATTTAG+TGG | + | chr8_4:44972577-44972596 | None:intergenic | 40.0% | |
| CCACTAAATTGTCACAAGGA+TGG | - | chr8_4:44972574-44972593 | Msa1327650:intron | 40.0% | |
| ! | TTTGAGATGCTTGCAATGTC+TGG | - | chr8_4:44972800-44972819 | Msa1327650:intron | 40.0% |
| ! | GATTGCTCATGGACTACAAT+TGG | - | chr8_4:44972822-44972841 | Msa1327650:intron | 40.0% |
| TCCTTACACTGTTGCCAAAA+TGG | - | chr8_4:44972994-44973013 | Msa1327650:intron | 40.0% | |
| !! | TCCATTTTGGCAACAGTGTA+AGG | + | chr8_4:44972998-44973017 | None:intergenic | 40.0% |
| TTACACTGTTGCCAAAATGG+AGG | - | chr8_4:44972997-44973016 | Msa1327650:intron | 40.0% | |
| ! | GATTTCCTGTTCCTCCATTT+TGG | + | chr8_4:44973011-44973030 | None:intergenic | 40.0% |
| GTGCAACACTAAGGTTACTT+AGG | - | chr8_4:44973212-44973231 | Msa1327650:intron | 40.0% | |
| ! | CAATTGTTTAGGGCGAATTC+AGG | + | chr8_4:44973327-44973346 | None:intergenic | 40.0% |
| !! | CAGGATATGAGTTCGAGTTT+TGG | + | chr8_4:44973384-44973403 | None:intergenic | 40.0% |
| TTGAGGAGGGAAGATTTATG+TGG | + | chr8_4:44973514-44973533 | None:intergenic | 40.0% | |
| CATTAGGCAAAGTTTGAGGA+GGG | + | chr8_4:44973527-44973546 | None:intergenic | 40.0% | |
| TCATTAGGCAAAGTTTGAGG+AGG | + | chr8_4:44973528-44973547 | None:intergenic | 40.0% | |
| CTCTCATTAGGCAAAGTTTG+AGG | + | chr8_4:44973531-44973550 | None:intergenic | 40.0% | |
| TCCTTAATGGGACACTTCTT+GGG | + | chr8_4:44973715-44973734 | None:intergenic | 40.0% | |
| !! | CTGCTTTTGGACTCCTTAAT+GGG | + | chr8_4:44973727-44973746 | None:intergenic | 40.0% |
| !! | TCTGCTTTTGGACTCCTTAA+TGG | + | chr8_4:44973728-44973747 | None:intergenic | 40.0% |
| ATTAAGGAGTCCAAAAGCAG+AGG | - | chr8_4:44973727-44973746 | Msa1327650:CDS | 40.0% | |
| ! | AAAACGTGGATTTCGGTTTG+TGG | - | chr8_4:44973769-44973788 | Msa1327650:CDS | 40.0% |
| ! | AAACGTGGATTTCGGTTTGT+GGG | - | chr8_4:44973770-44973789 | Msa1327650:CDS | 40.0% |
| GTTAGTTAGATATGCCTCCA+AGG | + | chr8_4:44973896-44973915 | None:intergenic | 40.0% | |
| ! | TTGCACCTTTTCAATTCCCC+AGG | + | chr8_4:44969668-44969687 | None:intergenic | 45.0% |
| ! | GGGAATTGAAAAGGTGCAAC+TGG | - | chr8_4:44969669-44969688 | Msa1327650:CDS | 45.0% |
| TGTGTGTGAATCTAGCCACT+AGG | + | chr8_4:44970105-44970124 | None:intergenic | 45.0% | |
| AAAGCCTTCTAAACGCCCTT+TGG | + | chr8_4:44971306-44971325 | None:intergenic | 45.0% | |
| TGCAATGTCTGGATTGCTCA+TGG | - | chr8_4:44972811-44972830 | Msa1327650:intron | 45.0% | |
| TGTTGCCAAAATGGAGGAAC+AGG | - | chr8_4:44973003-44973022 | Msa1327650:intron | 45.0% | |
| AGGTTACTTAGGTATGGCCA+TGG | - | chr8_4:44973223-44973242 | Msa1327650:intron | 45.0% | |
| GGTTACTTAGGTATGGCCAT+GGG | - | chr8_4:44973224-44973243 | Msa1327650:intron | 45.0% | |
| GTTACTTAGGTATGGCCATG+GGG | - | chr8_4:44973225-44973244 | Msa1327650:intron | 45.0% | |
| GAATGCCGAAGAATGTGATG+TGG | - | chr8_4:44973436-44973455 | Msa1327650:intron | 45.0% | |
| TAGGGCAAGAGACTCTCATT+AGG | + | chr8_4:44973543-44973562 | None:intergenic | 45.0% | |
| TAATGAGAGTCTCTTGCCCT+AGG | - | chr8_4:44973542-44973561 | Msa1327650:intron | 45.0% | |
| CAACAGGTTGTTAGGGAATG+TGG | - | chr8_4:44973626-44973645 | Msa1327650:intron | 45.0% | |
| !! | ACCCAAGAAGTGTCCCATTA+AGG | - | chr8_4:44973711-44973730 | Msa1327650:intron | 45.0% |
| CTCCTTAATGGGACACTTCT+TGG | + | chr8_4:44973716-44973735 | None:intergenic | 45.0% | |
| ! | TTGCTTAGAGCCTCTGCTTT+TGG | + | chr8_4:44973740-44973759 | None:intergenic | 45.0% |
| !! | AAAAGCAGAGGCTCTAAGCA+AGG | - | chr8_4:44973739-44973758 | Msa1327650:CDS | 45.0% |
| AGCAAGGACATGGTAAAACG+TGG | - | chr8_4:44973755-44973774 | Msa1327650:CDS | 45.0% | |
| ! | CACTCTTTTATGCAAGCTGC+AGG | - | chr8_4:44973806-44973825 | Msa1327650:CDS | 45.0% |
| TAAGCCTAGCAGAAAGACCT+TGG | - | chr8_4:44973876-44973895 | Msa1327650:CDS | 45.0% | |
| !!! | TTTAGTAATTTTTTTTTTTT+TGG | + | chr8_4:44970907-44970926 | None:intergenic | 5.0% |
| !!! | ATAGTTTTTTTTTTTTTTTT+AGG | + | chr8_4:44972204-44972223 | None:intergenic | 5.0% |
| TTTCAATTCCCCAGGCTCAG+TGG | + | chr8_4:44969660-44969679 | None:intergenic | 50.0% | |
| CTGAGCCTGGGGAATTGAAA+AGG | - | chr8_4:44969660-44969679 | Msa1327650:CDS | 50.0% | |
| TTCGGAACGCACGAAAGACA+CGG | - | chr8_4:44971486-44971505 | Msa1327650:intron | 50.0% | |
| !! | AGAGGCTCTAAGCAAGGACA+TGG | - | chr8_4:44973745-44973764 | Msa1327650:CDS | 50.0% |
| CACTAGTGACCACTGAGCCT+GGG | - | chr8_4:44969648-44969667 | Msa1327650:CDS | 55.0% | |
| ACTAGTGACCACTGAGCCTG+GGG | - | chr8_4:44969649-44969668 | Msa1327650:CDS | 55.0% | |
| GTGTGGAGAAGTGGGGAATC+CGG | - | chr8_4:44970129-44970148 | Msa1327650:intron | 55.0% | |
| TGTGGAGAAGTGGGGAATCC+GGG | - | chr8_4:44970130-44970149 | Msa1327650:intron | 55.0% | |
| ! | GATAATTTGTGCAGGGGCCG+AGG | + | chr8_4:44970163-44970182 | None:intergenic | 55.0% |
| TCGGAACGCACGAAAGACAC+GGG | - | chr8_4:44971487-44971506 | Msa1327650:intron | 55.0% | |
| ACTTAGGTATGGCCATGGGG+CGG | - | chr8_4:44973228-44973247 | Msa1327650:intron | 55.0% | |
| AGATGAGAAAACCCGCCCCA+TGG | + | chr8_4:44973243-44973262 | None:intergenic | 55.0% | |
| GCCTAGCAGAAAGACCTTGG+AGG | - | chr8_4:44973879-44973898 | Msa1327650:CDS | 55.0% | |
| GCCTCCAAGGTCTTTCTGCT+AGG | + | chr8_4:44973883-44973902 | None:intergenic | 55.0% | |
| CCAGGCTCAGTGGTCACTAG+TGG | + | chr8_4:44969650-44969669 | None:intergenic | 60.0% | |
| CCACTAGTGACCACTGAGCC+TGG | - | chr8_4:44969647-44969666 | Msa1327650:CDS | 60.0% | |
| GTGGAGAAGTGGGGAATCCG+GGG | - | chr8_4:44970131-44970150 | Msa1327650:intron | 60.0% | |
| GGAATCCGGGGTTCGAACCT+CGG | - | chr8_4:44970143-44970162 | Msa1327650:intron | 60.0% | |
| CGGAACGCACGAAAGACACG+GGG | - | chr8_4:44971488-44971507 | Msa1327650:intron | 60.0% | |
| CTTAGGTATGGCCATGGGGC+GGG | - | chr8_4:44973229-44973248 | Msa1327650:intron | 60.0% | |
| AGGGGCCGAGGTTCGAACCC+CGG | + | chr8_4:44970151-44970170 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 44969224 | 44974208 | 44969224 | ID=Msa1327650;Name=Msa1327650 |
| chr8_4 | mRNA | 44969224 | 44974208 | 44969224 | ID=Msa1327650-mRNA-1;Parent=Msa1327650;Name=Msa1327650-mRNA-1;_AED=0.20;_eAED=0.20;_QI=111|1|1|1|1|1|5|298|311 |
| chr8_4 | exon | 44969224 | 44969800 | 44969224 | ID=Msa1327650-mRNA-1:exon:12553;Parent=Msa1327650-mRNA-1 |
| chr8_4 | exon | 44970318 | 44970459 | 44970318 | ID=Msa1327650-mRNA-1:exon:12552;Parent=Msa1327650-mRNA-1 |
| chr8_4 | exon | 44970556 | 44970639 | 44970556 | ID=Msa1327650-mRNA-1:exon:12551;Parent=Msa1327650-mRNA-1 |
| chr8_4 | exon | 44971046 | 44971103 | 44971046 | ID=Msa1327650-mRNA-1:exon:12550;Parent=Msa1327650-mRNA-1 |
| chr8_4 | exon | 44973725 | 44974208 | 44973725 | ID=Msa1327650-mRNA-1:exon:12549;Parent=Msa1327650-mRNA-1 |
| chr8_4 | five_prime_UTR | 44974098 | 44974208 | 44974098 | ID=Msa1327650-mRNA-1:five_prime_utr;Parent=Msa1327650-mRNA-1 |
| chr8_4 | CDS | 44973725 | 44974097 | 44973725 | ID=Msa1327650-mRNA-1:cds;Parent=Msa1327650-mRNA-1 |
| chr8_4 | CDS | 44971046 | 44971103 | 44971046 | ID=Msa1327650-mRNA-1:cds;Parent=Msa1327650-mRNA-1 |
| chr8_4 | CDS | 44970556 | 44970639 | 44970556 | ID=Msa1327650-mRNA-1:cds;Parent=Msa1327650-mRNA-1 |
| chr8_4 | CDS | 44970318 | 44970459 | 44970318 | ID=Msa1327650-mRNA-1:cds;Parent=Msa1327650-mRNA-1 |
| chr8_4 | CDS | 44969522 | 44969800 | 44969522 | ID=Msa1327650-mRNA-1:cds;Parent=Msa1327650-mRNA-1 |
| chr8_4 | three_prime_UTR | 44969224 | 44969521 | 44969224 | ID=Msa1327650-mRNA-1:three_prime_utr;Parent=Msa1327650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
