Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250820 | XP_024627457.1 | 98.718 | 312 | 4 | 0 | 1 | 312 | 1 | 312 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250820 | sp|P44321|3MGA_HAEIN | 42.222 | 180 | 100 | 3 | 117 | 295 | 4 | 180 | 1.31e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250820 | A0A396GM12 | 97.778 | 315 | 4 | 1 | 1 | 312 | 1 | 315 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0199960 | Msa1250820 | 0.800041 | 1.736222e-48 | -8.615850e-47 |
| Msa1250820 | Msa1291520 | 0.812777 | 3.574702e-51 | -8.615850e-47 |
| Msa1250820 | Msa1327650 | 0.831108 | 2.011657e-55 | -8.615850e-47 |
| Msa0242490 | Msa1250820 | 0.806384 | 8.446328e-50 | -8.615850e-47 |
| Msa0280690 | Msa1250820 | 0.815218 | 1.034745e-51 | -8.615850e-47 |
| Msa1197380 | Msa1250820 | 0.826473 | 2.661730e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250820 | MtrunA17_Chr8g0366071 | 97.778 | 315 | 4 | 1 | 1 | 312 | 1 | 315 | 0.0 | 640 |
| Msa1250820 | MtrunA17_Chr5g0420791 | 66.987 | 312 | 99 | 3 | 1 | 312 | 1 | 308 | 3.15e-143 | 406 |
| Msa1250820 | MtrunA17_Chr4g0073991 | 49.528 | 212 | 105 | 1 | 95 | 306 | 129 | 338 | 3.47e-77 | 240 |
| Msa1250820 | MtrunA17_Chr4g0001371 | 51.337 | 187 | 91 | 0 | 116 | 302 | 137 | 323 | 1.36e-72 | 228 |
| Msa1250820 | MtrunA17_Chr2g0309681 | 50.000 | 192 | 94 | 1 | 114 | 305 | 199 | 388 | 3.86e-70 | 223 |
| Msa1250820 | MtrunA17_Chr8g0356301 | 48.438 | 192 | 97 | 1 | 114 | 305 | 193 | 382 | 1.26e-68 | 218 |
| Msa1250820 | MtrunA17_Chr3g0141411 | 48.128 | 187 | 96 | 1 | 116 | 301 | 128 | 314 | 4.45e-65 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1250820 | AT1G13635.2 | 63.192 | 307 | 109 | 3 | 7 | 312 | 8 | 311 | 1.06e-130 | 374 |
| Msa1250820 | AT1G13635.1 | 63.192 | 307 | 109 | 3 | 7 | 312 | 8 | 311 | 1.06e-130 | 374 |
| Msa1250820 | AT1G75090.1 | 51.020 | 196 | 96 | 0 | 112 | 307 | 115 | 310 | 1.06e-74 | 233 |
| Msa1250820 | AT5G57970.1 | 44.094 | 254 | 137 | 3 | 58 | 307 | 93 | 345 | 2.49e-74 | 232 |
| Msa1250820 | AT5G57970.2 | 44.094 | 254 | 137 | 3 | 58 | 307 | 93 | 345 | 2.49e-74 | 232 |
| Msa1250820 | AT5G44680.1 | 45.064 | 233 | 121 | 2 | 78 | 305 | 121 | 351 | 2.59e-72 | 227 |
| Msa1250820 | AT1G15970.1 | 48.168 | 191 | 99 | 0 | 116 | 306 | 145 | 335 | 4.27e-68 | 216 |
| Msa1250820 | AT1G15970.2 | 48.168 | 191 | 99 | 0 | 116 | 306 | 145 | 335 | 4.27e-68 | 216 |
| Msa1250820 | AT3G12710.1 | 43.668 | 229 | 126 | 2 | 81 | 308 | 86 | 312 | 7.64e-67 | 212 |
| Msa1250820 | AT1G80850.1 | 45.550 | 191 | 104 | 0 | 116 | 306 | 134 | 324 | 2.17e-65 | 209 |
Find 60 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTAGAGCCTCTGCTTT+TGG | 0.204125 | 8_2:-46604707 | None:intergenic |
| GATTTCCTGTTCCTCCATTT+TGG | 0.208004 | 8_2:-46603982 | None:intergenic |
| TCCTTACACTGTTGCCAAAA+TGG | 0.236844 | 8_2:+46603968 | Msa1250820:CDS |
| CTCCTTAATGGTACACTTCT+TGG | 0.249057 | 8_2:-46604683 | None:intergenic |
| TATTTGTATTTGTTAATTAT+TGG | 0.253663 | 8_2:-46604659 | None:intergenic |
| AAAGTACAAGCGATGAAAAT+TGG | 0.290448 | 8_2:-46604976 | None:intergenic |
| ATCTTCATCAACAGGTTGTT+AGG | 0.301024 | 8_2:+46604588 | Msa1250820:intron |
| AGCTGATTCTTTGACTCCAT+TGG | 0.322748 | 8_2:+46600631 | Msa1250820:CDS |
| ATTTACCTTCATTATGCATT+TGG | 0.335454 | 8_2:-46604072 | None:intergenic |
| ACCCAAGAAGTGTACCATTA+AGG | 0.336418 | 8_2:+46604681 | Msa1250820:CDS |
| ACATGGTAAAACGTGGATTT+CGG | 0.376776 | 8_2:+46604732 | Msa1250820:CDS |
| TTTGAGATGCTTGCAATGTC+TGG | 0.382865 | 8_2:+46603774 | Msa1250820:CDS |
| TTCAAGAAAGTGTACCCTAT+TGG | 0.391313 | 8_2:+46600530 | Msa1250820:CDS |
| GGGAATTGAAAAGGTGCAAC+TGG | 0.400524 | 8_2:+46600768 | Msa1250820:CDS |
| CTTTGACTCCATTGGATGAA+AGG | 0.411007 | 8_2:+46600639 | Msa1250820:CDS |
| TCCTTAATGGTACACTTCTT+GGG | 0.414255 | 8_2:-46604682 | None:intergenic |
| TAGAATTTCATGATGAATGC+TGG | 0.424817 | 8_2:+46603244 | Msa1250820:CDS |
| TGTTGCCAAAATGGAGGAAC+AGG | 0.430065 | 8_2:+46603977 | Msa1250820:CDS |
| GATTGCTCATGGACTACAAT+TGG | 0.434181 | 8_2:+46603796 | Msa1250820:CDS |
| AAATGTAAGAAAACAAGCTT+TGG | 0.439042 | 8_2:+46600442 | Msa1250820:CDS |
| GGTTGGAATTTATGAAAACT+TGG | 0.444998 | 8_2:-46600346 | None:intergenic |
| TGCAATGTCTGGATTGCTCA+TGG | 0.456628 | 8_2:+46603785 | Msa1250820:CDS |
| CATACAAATTATTACCTAAG+TGG | 0.470871 | 8_2:-46603843 | None:intergenic |
| TCTTCATCAACAGGTTGTTA+GGG | 0.472618 | 8_2:+46604589 | Msa1250820:intron |
| GATCATTTAGTAGCTACATA+TGG | 0.478959 | 8_2:+46604618 | Msa1250820:CDS |
| CCACTAGTGAATACTGAGCC+AGG | 0.482686 | 8_2:+46600746 | Msa1250820:CDS |
| AAAACGTGGATTTCGGTTTG+TGG | 0.483743 | 8_2:+46604739 | Msa1250820:CDS |
| AAACGTGGATTTCGGTTTGT+GGG | 0.497995 | 8_2:+46604740 | Msa1250820:CDS |
| TACAAACAAGTAGTTACAAA+CGG | 0.505820 | 8_2:-46605098 | None:intergenic |
| CTGAGCCAGGGGAATTGAAA+AGG | 0.506702 | 8_2:+46600759 | Msa1250820:CDS |
| AGAATTTCATGATGAATGCT+GGG | 0.513589 | 8_2:+46603245 | Msa1250820:CDS |
| TGGAATTTATGAAAACTTGG+AGG | 0.513809 | 8_2:-46600343 | None:intergenic |
| CAACAGGTTGTTAGGGAATG+TGG | 0.514316 | 8_2:+46604596 | Msa1250820:intron |
| ACTTACTTGTCGTCATAAGC+TGG | 0.516840 | 8_2:-46603273 | None:intergenic |
| ATAAAAGAGTGCACTATCAC+TGG | 0.517350 | 8_2:-46604764 | None:intergenic |
| AGATAGATGTTGAAGTTGGT+TGG | 0.518727 | 8_2:-46600363 | None:intergenic |
| GCCTCCAAGGTCTTTCTGCT+AGG | 0.519579 | 8_2:-46604850 | None:intergenic |
| ATTGACCATTGATCATCTTG+TGG | 0.520664 | 8_2:+46604799 | Msa1250820:CDS |
| TTTCAGCTTCTTCACATGAA+AGG | 0.522846 | 8_2:+46600684 | Msa1250820:CDS |
| GGAATTTATGAAAACTTGGA+GGG | 0.531513 | 8_2:-46600342 | None:intergenic |
| ACAATCCACAAGATGATCAA+TGG | 0.535979 | 8_2:-46604804 | None:intergenic |
| AATGAGATAGATGTTGAAGT+TGG | 0.537738 | 8_2:-46600367 | None:intergenic |
| CAATGCCAAATGCATAATGA+AGG | 0.541462 | 8_2:+46604067 | Msa1250820:CDS |
| CCTGGCTCAGTATTCACTAG+TGG | 0.544204 | 8_2:-46600746 | None:intergenic |
| TAAGCCTAGCAGAAAGACCT+TGG | 0.551983 | 8_2:+46604846 | Msa1250820:CDS |
| GATGAAATCCTTTCATCCAA+TGG | 0.555797 | 8_2:-46600647 | None:intergenic |
| CAAAACCAAATTGAAAATTG+TGG | 0.576016 | 8_2:-46604900 | None:intergenic |
| CACTAGTGAATACTGAGCCA+GGG | 0.593056 | 8_2:+46600747 | Msa1250820:CDS |
| GCCTAGCAGAAAGACCTTGG+AGG | 0.593814 | 8_2:+46604849 | Msa1250820:CDS |
| GATTTGACAAGTACAAGGAA+TGG | 0.594977 | 8_2:-46605013 | None:intergenic |
| AAAAGCAGAGGCTCTAAGCA+AGG | 0.611659 | 8_2:+46604709 | Msa1250820:CDS |
| ATATAGATTTGACAAGTACA+AGG | 0.624872 | 8_2:-46605018 | None:intergenic |
| GTTAGTTAGATATGCCTCCA+AGG | 0.629114 | 8_2:-46604863 | None:intergenic |
| TAAGAAAACAAGCTTTGGAG+AGG | 0.633132 | 8_2:+46600447 | Msa1250820:CDS |
| AGAGGCTCTAAGCAAGGACA+TGG | 0.646875 | 8_2:+46604715 | Msa1250820:CDS |
| TTACACTGTTGCCAAAATGG+AGG | 0.656370 | 8_2:+46603971 | Msa1250820:CDS |
| ATTAAGGAGTCCAAAAGCAG+AGG | 0.668988 | 8_2:+46604697 | Msa1250820:CDS |
| AGCAAGGACATGGTAAAACG+TGG | 0.674831 | 8_2:+46604725 | Msa1250820:CDS |
| ACTAGTGAATACTGAGCCAG+GGG | 0.675990 | 8_2:+46600748 | Msa1250820:CDS |
| GAATTTCATGATGAATGCTG+GGG | 0.685294 | 8_2:+46603246 | Msa1250820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAATTAAAATATAATA+TGG | - | chr8_2:46603382-46603401 | None:intergenic | 0.0% |
| !!! | TAAAATGTTTAAATTTTGAT+TGG | + | chr8_2:46601147-46601166 | Msa1250820:intron | 10.0% |
| !! | AAAAATGATAAATTTAATCA+TGG | - | chr8_2:46602327-46602346 | None:intergenic | 10.0% |
| !!! | AAAAAAAACTCTATTTTTAT+AGG | + | chr8_2:46602439-46602458 | Msa1250820:intron | 10.0% |
| !!! | AAAAAAACTCTATTTTTATA+GGG | + | chr8_2:46602440-46602459 | Msa1250820:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTAGGAA+AGG | - | chr8_2:46603100-46603119 | None:intergenic | 10.0% |
| !! | AAATAAAATGAAAATTGATA+TGG | - | chr8_2:46604105-46604124 | None:intergenic | 10.0% |
| !!! | TATTTGTATTTGTTAATTAT+TGG | - | chr8_2:46604662-46604681 | None:intergenic | 10.0% |
| !! | TGAAAGAAAAATAAATTGTA+GGG | - | chr8_2:46600398-46600417 | None:intergenic | 15.0% |
| !! | ATGAAAGAAAAATAAATTGT+AGG | - | chr8_2:46600399-46600418 | None:intergenic | 15.0% |
| !!! | TTTTATTATGGAAGAAATTT+TGG | - | chr8_2:46600508-46600527 | None:intergenic | 15.0% |
| !!! | AAATTTAAACATTTTAGCAA+TGG | - | chr8_2:46601143-46601162 | None:intergenic | 15.0% |
| !! | GTTTATATAAGCTTATATTA+AGG | + | chr8_2:46601175-46601194 | Msa1250820:intron | 15.0% |
| !!! | AAATAATTTAAAACTGAAAG+TGG | - | chr8_2:46601581-46601600 | None:intergenic | 15.0% |
| !!! | TTTTTAGTAAATTTAGTTCT+TGG | - | chr8_2:46601839-46601858 | None:intergenic | 15.0% |
| !!! | AAAAATATGAAATTGCATTT+TGG | - | chr8_2:46602150-46602169 | None:intergenic | 15.0% |
| !!! | TGAAAATTAAATGACATTTT+TGG | + | chr8_2:46602384-46602403 | Msa1250820:intron | 15.0% |
| !! | AAAATAAAGAGTTACTAATA+TGG | - | chr8_2:46602486-46602505 | None:intergenic | 15.0% |
| !!! | GTTATTAATAGACTTTAAAA+CGG | + | chr8_2:46602565-46602584 | Msa1250820:intron | 15.0% |
| !! | AAATCAATCATAAAATTGTA+GGG | - | chr8_2:46603353-46603372 | None:intergenic | 15.0% |
| !! | AAAATCAATCATAAAATTGT+AGG | - | chr8_2:46603354-46603373 | None:intergenic | 15.0% |
| !!! | AATGTTAACATTTGAAATTT+TGG | + | chr8_2:46603558-46603577 | Msa1250820:intron | 15.0% |
| !!! | TTATTATTTTTGAGTTTAGA+AGG | + | chr8_2:46604152-46604171 | Msa1250820:intron | 15.0% |
| !!! | TTTTTTGTTTCATTTATTGA+TGG | - | chr8_2:46605049-46605068 | None:intergenic | 15.0% |
| !! | ATAAATGAAACAAAAAAGAA+AGG | + | chr8_2:46605052-46605071 | Msa1250820:three_prime_UTR | 15.0% |
| !!! | CTTTCTTGAAGATTTTATTA+TGG | - | chr8_2:46600520-46600539 | None:intergenic | 20.0% |
| !! | TATAATGAAATGATATTGCA+TGG | - | chr8_2:46600829-46600848 | None:intergenic | 20.0% |
| !! | AATACAATGTTAGAGATATA+AGG | - | chr8_2:46601030-46601049 | None:intergenic | 20.0% |
| !! | TATATAAGCTTATATTAAGG+AGG | + | chr8_2:46601178-46601197 | Msa1250820:intron | 20.0% |
| !!! | GATAAAAATATCTGTTTTCA+GGG | - | chr8_2:46601232-46601251 | None:intergenic | 20.0% |
| !!! | TGATAAAAATATCTGTTTTC+AGG | - | chr8_2:46601233-46601252 | None:intergenic | 20.0% |
| !!! | GAAGTCAACTTTTTTTTTTT+TGG | - | chr8_2:46601666-46601685 | None:intergenic | 20.0% |
| !!! | ATTGACGCTTTTTTTATTTT+TGG | + | chr8_2:46601918-46601937 | Msa1250820:intron | 20.0% |
| !!! | TACAATTACTTTGTTATGTT+CGG | - | chr8_2:46602070-46602089 | None:intergenic | 20.0% |
| !!! | TTCAGATTCTAAAATTCAAA+GGG | + | chr8_2:46602219-46602238 | Msa1250820:intron | 20.0% |
| !! | ATAAAAATCACCTATTAAAC+AGG | + | chr8_2:46602903-46602922 | Msa1250820:intron | 20.0% |
| !! | ATAACATGTCAAAAAGTTTA+AGG | - | chr8_2:46602935-46602954 | None:intergenic | 20.0% |
| !! | AATTGGTAAGATTATGATTA+GGG | - | chr8_2:46602995-46603014 | None:intergenic | 20.0% |
| !! | AAATTGGTAAGATTATGATT+AGG | - | chr8_2:46602996-46603015 | None:intergenic | 20.0% |
| !!! | TTTTTGTCTTCTTAGAAAAT+TGG | - | chr8_2:46603012-46603031 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTAGGAAAGGAA+AGG | - | chr8_2:46603095-46603114 | None:intergenic | 20.0% |
| !! | AATAAATCTATTCCAGAATA+AGG | + | chr8_2:46603462-46603481 | Msa1250820:intron | 20.0% |
| !! | GACAGAAATTATAAAAAGAA+GGG | + | chr8_2:46603818-46603837 | Msa1250820:CDS | 20.0% |
| !!! | AAATTTTTATTTTGGAGACA+AGG | - | chr8_2:46604266-46604285 | None:intergenic | 20.0% |
| !! | TGTCTCCAAAATAAAAATTT+AGG | + | chr8_2:46604266-46604285 | Msa1250820:intron | 20.0% |
| !!! | GAATGCCTAAATTTTTATTT+TGG | - | chr8_2:46604274-46604293 | None:intergenic | 20.0% |
| !! | TATACTCAAACAATTGTTTA+GGG | - | chr8_2:46604309-46604328 | None:intergenic | 20.0% |
| !! | ATATACTCAAACAATTGTTT+AGG | - | chr8_2:46604310-46604329 | None:intergenic | 20.0% |
| ! | AAATGTAAGAAAACAAGCTT+TGG | + | chr8_2:46600442-46600461 | Msa1250820:CDS | 25.0% |
| ! | TTCGATATTGTGAAAAATTG+CGG | - | chr8_2:46601091-46601110 | None:intergenic | 25.0% |
| ! | TACATATCATGTCCATTAAT+TGG | + | chr8_2:46601308-46601327 | Msa1250820:intron | 25.0% |
| ! | AGTACAAATTAATGCTAAGT+TGG | - | chr8_2:46601457-46601476 | None:intergenic | 25.0% |
| !! | AATTTAAAACTGAAAGTGGT+AGG | - | chr8_2:46601577-46601596 | None:intergenic | 25.0% |
| ! | AACTAATAATAGCTAGTTGT+AGG | - | chr8_2:46601617-46601636 | None:intergenic | 25.0% |
| ! | AGTGTTTCAAAAACAATTTG+TGG | + | chr8_2:46601697-46601716 | Msa1250820:intron | 25.0% |
| !!! | TAGTAAATTTAGTTCTTGGA+CGG | - | chr8_2:46601835-46601854 | None:intergenic | 25.0% |
| ! | TACTACAATCCAAAAATTGA+GGG | - | chr8_2:46601983-46602002 | None:intergenic | 25.0% |
| !!! | AATTGCATTTTGGCATAAAA+GGG | - | chr8_2:46602140-46602159 | None:intergenic | 25.0% |
| !!! | AAATTGCATTTTGGCATAAA+AGG | - | chr8_2:46602141-46602160 | None:intergenic | 25.0% |
| !!! | GTTCAGATTCTAAAATTCAA+AGG | + | chr8_2:46602218-46602237 | Msa1250820:intron | 25.0% |
| !!! | TTTCAGATTTTTTGCATGTT+TGG | - | chr8_2:46602282-46602301 | None:intergenic | 25.0% |
| ! | TACTAATATGGTGTGAAATT+CGG | - | chr8_2:46602474-46602493 | None:intergenic | 25.0% |
| ! | ATCGACTGTTATGTTATATT+AGG | + | chr8_2:46602857-46602876 | Msa1250820:intron | 25.0% |
| ! | ATTGGTAAGATTATGATTAG+GGG | - | chr8_2:46602994-46603013 | None:intergenic | 25.0% |
| !! | AAACTATAATCTTTTCCGAT+TGG | + | chr8_2:46603120-46603139 | Msa1250820:intron | 25.0% |
| ! | TAATCTAAGTTTAGACCAAT+CGG | - | chr8_2:46603138-46603157 | None:intergenic | 25.0% |
| ! | ACATCAAAATTAGTTATACG+TGG | - | chr8_2:46603203-46603222 | None:intergenic | 25.0% |
| !!! | TATAACATACAAGTGTTGAA+CGG | - | chr8_2:46603307-46603326 | None:intergenic | 25.0% |
| !! | TTTAATGGTTTTCCTTATTC+TGG | - | chr8_2:46603477-46603496 | None:intergenic | 25.0% |
| ! | AAAACCATTAAATTGTAACG+AGG | + | chr8_2:46603485-46603504 | Msa1250820:intron | 25.0% |
| !!! | ACTTTGATTTTCAGATAGAT+TGG | + | chr8_2:46603517-46603536 | Msa1250820:intron | 25.0% |
| !!! | CTTTGATTTTCAGATAGATT+GGG | + | chr8_2:46603518-46603537 | Msa1250820:intron | 25.0% |
| !!! | TTTGATTTTCAGATAGATTG+GGG | + | chr8_2:46603519-46603538 | Msa1250820:intron | 25.0% |
| ! | ATCAATTAAGATGAGATAGT+TGG | - | chr8_2:46603732-46603751 | None:intergenic | 25.0% |
| ! | GGACAGAAATTATAAAAAGA+AGG | + | chr8_2:46603817-46603836 | Msa1250820:CDS | 25.0% |
| ! | CATACAAATTATTACCTAAG+TGG | - | chr8_2:46603846-46603865 | None:intergenic | 25.0% |
| ! | ATTTACCTTCATTATGCATT+TGG | - | chr8_2:46604075-46604094 | None:intergenic | 25.0% |
| !!! | AGACAAGGTTTAGTTTTTTA+GGG | - | chr8_2:46604251-46604270 | None:intergenic | 25.0% |
| !!! | TGTGAAAATTCTAGTTTTAC+AGG | - | chr8_2:46604373-46604392 | None:intergenic | 25.0% |
| ! | AAGTAAAAAAACACAACCTA+GGG | - | chr8_2:46604531-46604550 | None:intergenic | 25.0% |
| ! | AAAGTAAAAAAACACAACCT+AGG | - | chr8_2:46604532-46604551 | None:intergenic | 25.0% |
| ! | CAAAACCAAATTGAAAATTG+TGG | - | chr8_2:46604903-46604922 | None:intergenic | 25.0% |
| ! | ATATAGATTTGACAAGTACA+AGG | - | chr8_2:46605021-46605040 | None:intergenic | 25.0% |
| ! | TACAAACAAGTAGTTACAAA+CGG | - | chr8_2:46605101-46605120 | None:intergenic | 25.0% |
| GGAATTTATGAAAACTTGGA+GGG | - | chr8_2:46600345-46600364 | None:intergenic | 30.0% | |
| TGGAATTTATGAAAACTTGG+AGG | - | chr8_2:46600346-46600365 | None:intergenic | 30.0% | |
| GGTTGGAATTTATGAAAACT+TGG | - | chr8_2:46600349-46600368 | None:intergenic | 30.0% | |
| AATGAGATAGATGTTGAAGT+TGG | - | chr8_2:46600370-46600389 | None:intergenic | 30.0% | |
| !!! | TGCTTTTTTGAAGTCCAATA+GGG | - | chr8_2:46600547-46600566 | None:intergenic | 30.0% |
| AACTGGATCACAAAAAATAG+TGG | + | chr8_2:46600785-46600804 | Msa1250820:CDS | 30.0% | |
| GTCAAATATGTCTCATATTG+CGG | - | chr8_2:46601069-46601088 | None:intergenic | 30.0% | |
| ! | GCAATTTTTCACAATATCGA+AGG | + | chr8_2:46601090-46601109 | Msa1250820:intron | 30.0% |
| AGCTCAAAACAACCAATTAA+TGG | - | chr8_2:46601323-46601342 | None:intergenic | 30.0% | |
| ! | ATTTTGCAATACCAACATAG+TGG | + | chr8_2:46601479-46601498 | Msa1250820:intron | 30.0% |
| ATTAAGTGTAACCACTATGT+TGG | - | chr8_2:46601493-46601512 | None:intergenic | 30.0% | |
| TTGTGATTATATTTGCAGTC+AGG | - | chr8_2:46601746-46601765 | None:intergenic | 30.0% | |
| ACCCAAGAATAAATTACAAG+TGG | + | chr8_2:46601797-46601816 | Msa1250820:intron | 30.0% | |
| CCCACTTGTAATTTATTCTT+GGG | - | chr8_2:46601801-46601820 | None:intergenic | 30.0% | |
| CCCAAGAATAAATTACAAGT+GGG | + | chr8_2:46601798-46601817 | Msa1250820:intron | 30.0% | |
| CCAAGAATAAATTACAAGTG+GGG | + | chr8_2:46601799-46601818 | Msa1250820:intron | 30.0% | |
| ! | GACATTTTTGTACTTTCATG+AGG | - | chr8_2:46601961-46601980 | None:intergenic | 30.0% |
| ! | CAAAAATGTCCCTCAATTTT+TGG | + | chr8_2:46601971-46601990 | Msa1250820:intron | 30.0% |
| CTACTACAATCCAAAAATTG+AGG | - | chr8_2:46601984-46602003 | None:intergenic | 30.0% | |
| AACCTTAGCTAAAATGACAA+CGG | - | chr8_2:46602035-46602054 | None:intergenic | 30.0% | |
| !! | ATTGCATTTTGGCATAAAAG+GGG | - | chr8_2:46602139-46602158 | None:intergenic | 30.0% |
| CATCTCGTGTCAAAAAATTA+TGG | - | chr8_2:46602177-46602196 | None:intergenic | 30.0% | |
| ACTAATATGGTGTGAAATTC+GGG | - | chr8_2:46602473-46602492 | None:intergenic | 30.0% | |
| ATGTATGTACCTAAGAAATG+CGG | - | chr8_2:46602525-46602544 | None:intergenic | 30.0% | |
| CTATAGTTGTAAAACAAGTG+TGG | - | chr8_2:46603072-46603091 | None:intergenic | 30.0% | |
| TAGAATTTCATGATGAATGC+TGG | + | chr8_2:46603244-46603263 | Msa1250820:CDS | 30.0% | |
| AGAATTTCATGATGAATGCT+GGG | + | chr8_2:46603245-46603264 | Msa1250820:CDS | 30.0% | |
| AGAGAAAATAACAAAACCTG+AGG | + | chr8_2:46603438-46603457 | Msa1250820:intron | 30.0% | |
| TGGAATAGATTTATTTCCTC+AGG | - | chr8_2:46603457-46603476 | None:intergenic | 30.0% | |
| TCATCCTCGTTACAATTTAA+TGG | - | chr8_2:46603492-46603511 | None:intergenic | 30.0% | |
| ! | TTATGTAGAGAAGTTTTTGC+TGG | + | chr8_2:46603939-46603958 | Msa1250820:intron | 30.0% |
| !!! | GAGACAAGGTTTAGTTTTTT+AGG | - | chr8_2:46604252-46604271 | None:intergenic | 30.0% |
| ! | AGAATTTTCACATCAAATGC+AGG | + | chr8_2:46604381-46604400 | Msa1250820:intron | 30.0% |
| !! | ACACAACTTATCGATTTATG+AGG | + | chr8_2:46604452-46604471 | Msa1250820:intron | 30.0% |
| ! | AGAAGTATAGTTAGCAACTA+TGG | - | chr8_2:46604566-46604585 | None:intergenic | 30.0% |
| GATCATTTAGTAGCTACATA+TGG | + | chr8_2:46604618-46604637 | Msa1250820:CDS | 30.0% | |
| ! | CACTACCACAATTTTCAATT+TGG | + | chr8_2:46604895-46604914 | Msa1250820:three_prime_UTR | 30.0% |
| AAAGTACAAGCGATGAAAAT+TGG | - | chr8_2:46604979-46604998 | None:intergenic | 30.0% | |
| !!! | TCATCGCTTGTACTTTTTTT+TGG | + | chr8_2:46604983-46605002 | Msa1250820:three_prime_UTR | 30.0% |
| !!! | TGGAGGGTTTTAAATTGAGA+TGG | - | chr8_2:46600329-46600348 | None:intergenic | 35.0% |
| ! | AGATAGATGTTGAAGTTGGT+TGG | - | chr8_2:46600366-46600385 | None:intergenic | 35.0% |
| !! | TAAGAAAACAAGCTTTGGAG+AGG | + | chr8_2:46600447-46600466 | Msa1250820:CDS | 35.0% |
| ! | TTCAAGAAAGTGTACCCTAT+TGG | + | chr8_2:46600530-46600549 | Msa1250820:CDS | 35.0% |
| !!! | GTGCTTTTTTGAAGTCCAAT+AGG | - | chr8_2:46600548-46600567 | None:intergenic | 35.0% |
| GATGAAATCCTTTCATCCAA+TGG | - | chr8_2:46600650-46600669 | None:intergenic | 35.0% | |
| TTTCAGCTTCTTCACATGAA+AGG | + | chr8_2:46600684-46600703 | Msa1250820:CDS | 35.0% | |
| CTGTGCACAAAAACATCTTA+AGG | + | chr8_2:46601391-46601410 | Msa1250820:intron | 35.0% | |
| AGATCGCATTAATCTCACTA+AGG | + | chr8_2:46601769-46601788 | Msa1250820:intron | 35.0% | |
| CCCCACTTGTAATTTATTCT+TGG | - | chr8_2:46601802-46601821 | None:intergenic | 35.0% | |
| !!! | ATCCGTTGTCATTTTAGCTA+AGG | + | chr8_2:46602030-46602049 | Msa1250820:intron | 35.0% |
| ! | ATGTTTGAAGCATGTGAAAG+AGG | + | chr8_2:46602194-46602213 | Msa1250820:intron | 35.0% |
| !! | AAATTCAAAGGGCGTTTAGA+AGG | + | chr8_2:46602230-46602249 | Msa1250820:intron | 35.0% |
| ! | CTGAAAAAAGTAGTTAGCCT+CGG | + | chr8_2:46602296-46602315 | Msa1250820:intron | 35.0% |
| ATTTAATCATGGTTGAACCG+AGG | - | chr8_2:46602316-46602335 | None:intergenic | 35.0% | |
| AATGAAAGAGAAACACGCTT+CGG | + | chr8_2:46602350-46602369 | Msa1250820:intron | 35.0% | |
| ! | GGTGATTTTTATGCTCAAGT+CGG | - | chr8_2:46602895-46602914 | None:intergenic | 35.0% |
| AAGGACTAAGCCTGTTTAAT+AGG | - | chr8_2:46602916-46602935 | None:intergenic | 35.0% | |
| GTAAGATTATGATTAGGGGT+GGG | - | chr8_2:46602990-46603009 | None:intergenic | 35.0% | |
| GAATTTCATGATGAATGCTG+GGG | + | chr8_2:46603246-46603265 | Msa1250820:CDS | 35.0% | |
| GATTGGGGATAGAACATAAT+TGG | + | chr8_2:46603534-46603553 | Msa1250820:intron | 35.0% | |
| TAAAAAGAAGGGAACCACTT+AGG | + | chr8_2:46603829-46603848 | Msa1250820:CDS | 35.0% | |
| CAATGCCAAATGCATAATGA+AGG | + | chr8_2:46604067-46604086 | Msa1250820:CDS | 35.0% | |
| !!! | TGAGTTTAGAAGGCTAGTTT+TGG | + | chr8_2:46604162-46604181 | Msa1250820:intron | 35.0% |
| !!! | TTTAGTTTTTTAGGGCAAGC+TGG | - | chr8_2:46604243-46604262 | None:intergenic | 35.0% |
| !!! | GAGTTCGAGTTTTGGTTATT+TGG | - | chr8_2:46604346-46604365 | None:intergenic | 35.0% |
| GATATCCACATCACATTCTT+CGG | - | chr8_2:46604414-46604433 | None:intergenic | 35.0% | |
| TAGCAACTATGGTGAATTCA+TGG | - | chr8_2:46604555-46604574 | None:intergenic | 35.0% | |
| ACTTCTTGATCTTCATCAAC+AGG | + | chr8_2:46604580-46604599 | Msa1250820:intron | 35.0% | |
| ATCTTCATCAACAGGTTGTT+AGG | + | chr8_2:46604588-46604607 | Msa1250820:intron | 35.0% | |
| TCTTCATCAACAGGTTGTTA+GGG | + | chr8_2:46604589-46604608 | Msa1250820:intron | 35.0% | |
| TCCTTAATGGTACACTTCTT+GGG | - | chr8_2:46604685-46604704 | None:intergenic | 35.0% | |
| ACATGGTAAAACGTGGATTT+CGG | + | chr8_2:46604732-46604751 | Msa1250820:CDS | 35.0% | |
| ! | ATAAAAGAGTGCACTATCAC+TGG | - | chr8_2:46604767-46604786 | None:intergenic | 35.0% |
| ATTGACCATTGATCATCTTG+TGG | + | chr8_2:46604799-46604818 | Msa1250820:CDS | 35.0% | |
| ACAATCCACAAGATGATCAA+TGG | - | chr8_2:46604807-46604826 | None:intergenic | 35.0% | |
| !!! | GCTTGTACTTTTTTTTGGAG+AGG | + | chr8_2:46604988-46605007 | Msa1250820:three_prime_UTR | 35.0% |
| GATTTGACAAGTACAAGGAA+TGG | - | chr8_2:46605016-46605035 | None:intergenic | 35.0% | |
| ! | AGCTGATTCTTTGACTCCAT+TGG | + | chr8_2:46600631-46600650 | Msa1250820:CDS | 40.0% |
| CTTTGACTCCATTGGATGAA+AGG | + | chr8_2:46600639-46600658 | Msa1250820:CDS | 40.0% | |
| TCTTATCTTGTGCTTCCCTT+AGG | + | chr8_2:46600988-46601007 | Msa1250820:intron | 40.0% | |
| CTTATCTTGTGCTTCCCTTA+GGG | + | chr8_2:46600989-46601008 | Msa1250820:intron | 40.0% | |
| ! | CTTACTAACTTGTGCCCTAA+GGG | - | chr8_2:46601006-46601025 | None:intergenic | 40.0% |
| ! | TCTTACTAACTTGTGCCCTA+AGG | - | chr8_2:46601007-46601026 | None:intergenic | 40.0% |
| GCTAGTTGTAGGTAAGTACA+AGG | - | chr8_2:46601606-46601625 | None:intergenic | 40.0% | |
| GCATTAATCTCACTAAGGAG+CGG | + | chr8_2:46601774-46601793 | Msa1250820:intron | 40.0% | |
| GGGGTTTGTAACATGTAAAG+AGG | - | chr8_2:46602120-46602139 | None:intergenic | 40.0% | |
| ! | TGTTTTCCTCCGCATTTCTT+AGG | + | chr8_2:46602513-46602532 | Msa1250820:intron | 40.0% |
| TATGTACCTAAGAAATGCGG+AGG | - | chr8_2:46602522-46602541 | None:intergenic | 40.0% | |
| GGTAAGATTATGATTAGGGG+TGG | - | chr8_2:46602991-46603010 | None:intergenic | 40.0% | |
| CTACGTATAGCTTATCTGCA+TGG | - | chr8_2:46603227-46603246 | None:intergenic | 40.0% | |
| ACTTACTTGTCGTCATAAGC+TGG | - | chr8_2:46603276-46603295 | None:intergenic | 40.0% | |
| ! | TTTGAGATGCTTGCAATGTC+TGG | + | chr8_2:46603774-46603793 | Msa1250820:CDS | 40.0% |
| ! | GATTGCTCATGGACTACAAT+TGG | + | chr8_2:46603796-46603815 | Msa1250820:CDS | 40.0% |
| TCCTTACACTGTTGCCAAAA+TGG | + | chr8_2:46603968-46603987 | Msa1250820:CDS | 40.0% | |
| !! | TCCATTTTGGCAACAGTGTA+AGG | - | chr8_2:46603972-46603991 | None:intergenic | 40.0% |
| TTACACTGTTGCCAAAATGG+AGG | + | chr8_2:46603971-46603990 | Msa1250820:CDS | 40.0% | |
| ! | GATTTCCTGTTCCTCCATTT+TGG | - | chr8_2:46603985-46604004 | None:intergenic | 40.0% |
| !!! | CTAGTTTTGGTGCAACACTA+AGG | + | chr8_2:46604175-46604194 | Msa1250820:intron | 40.0% |
| GTGCAACACTAAGGTTACTT+AGG | + | chr8_2:46604184-46604203 | Msa1250820:intron | 40.0% | |
| AGGTTACTTAGGTATGACCA+TGG | + | chr8_2:46604195-46604214 | Msa1250820:intron | 40.0% | |
| GGTTACTTAGGTATGACCAT+GGG | + | chr8_2:46604196-46604215 | Msa1250820:intron | 40.0% | |
| GTTACTTAGGTATGACCATG+GGG | + | chr8_2:46604197-46604216 | Msa1250820:intron | 40.0% | |
| ! | CAATTGTTTAGGGCGAATTC+AGG | - | chr8_2:46604299-46604318 | None:intergenic | 40.0% |
| !! | CAGGATATGAGTTCGAGTTT+TGG | - | chr8_2:46604354-46604373 | None:intergenic | 40.0% |
| TTGAGGAGGGAAGATTTATG+TGG | - | chr8_2:46604484-46604503 | None:intergenic | 40.0% | |
| CATTAGGCAAAGTTTGAGGA+GGG | - | chr8_2:46604497-46604516 | None:intergenic | 40.0% | |
| TCATTAGGCAAAGTTTGAGG+AGG | - | chr8_2:46604498-46604517 | None:intergenic | 40.0% | |
| CTCTCATTAGGCAAAGTTTG+AGG | - | chr8_2:46604501-46604520 | None:intergenic | 40.0% | |
| ! | ACCCAAGAAGTGTACCATTA+AGG | + | chr8_2:46604681-46604700 | Msa1250820:CDS | 40.0% |
| CTCCTTAATGGTACACTTCT+TGG | - | chr8_2:46604686-46604705 | None:intergenic | 40.0% | |
| !! | TCTGCTTTTGGACTCCTTAA+TGG | - | chr8_2:46604698-46604717 | None:intergenic | 40.0% |
| ATTAAGGAGTCCAAAAGCAG+AGG | + | chr8_2:46604697-46604716 | Msa1250820:CDS | 40.0% | |
| ! | AAAACGTGGATTTCGGTTTG+TGG | + | chr8_2:46604739-46604758 | Msa1250820:CDS | 40.0% |
| ! | AAACGTGGATTTCGGTTTGT+GGG | + | chr8_2:46604740-46604759 | Msa1250820:CDS | 40.0% |
| GTTAGTTAGATATGCCTCCA+AGG | - | chr8_2:46604866-46604885 | None:intergenic | 40.0% | |
| CACTAGTGAATACTGAGCCA+GGG | + | chr8_2:46600747-46600766 | Msa1250820:CDS | 45.0% | |
| ACTAGTGAATACTGAGCCAG+GGG | + | chr8_2:46600748-46600767 | Msa1250820:CDS | 45.0% | |
| ! | TTGCACCTTTTCAATTCCCC+TGG | - | chr8_2:46600767-46600786 | None:intergenic | 45.0% |
| ! | GGGAATTGAAAAGGTGCAAC+TGG | + | chr8_2:46600768-46600787 | Msa1250820:CDS | 45.0% |
| TCATATTGCGGTCACAATCG+CGG | - | chr8_2:46601057-46601076 | None:intergenic | 45.0% | |
| TTCGAAACGCACGAAAGACA+TGG | + | chr8_2:46602410-46602429 | Msa1250820:intron | 45.0% | |
| TCGAAACGCACGAAAGACAT+GGG | + | chr8_2:46602411-46602430 | Msa1250820:intron | 45.0% | |
| TGCAATGTCTGGATTGCTCA+TGG | + | chr8_2:46603785-46603804 | Msa1250820:CDS | 45.0% | |
| TGTTGCCAAAATGGAGGAAC+AGG | + | chr8_2:46603977-46603996 | Msa1250820:CDS | 45.0% | |
| GAATGCCGAAGAATGTGATG+TGG | + | chr8_2:46604406-46604425 | Msa1250820:intron | 45.0% | |
| TAGGGCAAGAGACTCTCATT+AGG | - | chr8_2:46604513-46604532 | None:intergenic | 45.0% | |
| TAATGAGAGTCTCTTGCCCT+AGG | + | chr8_2:46604512-46604531 | Msa1250820:intron | 45.0% | |
| CAACAGGTTGTTAGGGAATG+TGG | + | chr8_2:46604596-46604615 | Msa1250820:intron | 45.0% | |
| ! | TTGCTTAGAGCCTCTGCTTT+TGG | - | chr8_2:46604710-46604729 | None:intergenic | 45.0% |
| !! | AAAAGCAGAGGCTCTAAGCA+AGG | + | chr8_2:46604709-46604728 | Msa1250820:CDS | 45.0% |
| AGCAAGGACATGGTAAAACG+TGG | + | chr8_2:46604725-46604744 | Msa1250820:CDS | 45.0% | |
| ! | CACTCTTTTATGCAAGCTGC+AGG | + | chr8_2:46604776-46604795 | Msa1250820:CDS | 45.0% |
| TAAGCCTAGCAGAAAGACCT+TGG | + | chr8_2:46604846-46604865 | Msa1250820:CDS | 45.0% | |
| !!! | AGTTTTTTTTTTTTTTTTTT+AGG | - | chr8_2:46603105-46603124 | None:intergenic | 5.0% |
| !!! | AATAATTAATATGTAATTTT+TGG | + | chr8_2:46603326-46603345 | Msa1250820:intron | 5.0% |
| CCTGGCTCAGTATTCACTAG+TGG | - | chr8_2:46600749-46600768 | None:intergenic | 50.0% | |
| CCACTAGTGAATACTGAGCC+AGG | + | chr8_2:46600746-46600765 | Msa1250820:CDS | 50.0% | |
| CTGAGCCAGGGGAATTGAAA+AGG | + | chr8_2:46600759-46600778 | Msa1250820:CDS | 50.0% | |
| CGAAACGCACGAAAGACATG+GGG | + | chr8_2:46602412-46602431 | Msa1250820:intron | 50.0% | |
| ACTTAGGTATGACCATGGGG+CGG | + | chr8_2:46604200-46604219 | Msa1250820:intron | 50.0% | |
| !! | AGAGGCTCTAAGCAAGGACA+TGG | + | chr8_2:46604715-46604734 | Msa1250820:CDS | 50.0% |
| CTTAGGTATGACCATGGGGC+GGG | + | chr8_2:46604201-46604220 | Msa1250820:intron | 55.0% | |
| AGATGAGAAAACCCGCCCCA+TGG | - | chr8_2:46604215-46604234 | None:intergenic | 55.0% | |
| GCCTAGCAGAAAGACCTTGG+AGG | + | chr8_2:46604849-46604868 | Msa1250820:CDS | 55.0% | |
| GCCTCCAAGGTCTTTCTGCT+AGG | - | chr8_2:46604853-46604872 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 46600323 | 46605172 | 46600323 | ID=Msa1250820;Name=Msa1250820 |
| chr8_2 | mRNA | 46600323 | 46605172 | 46600323 | ID=Msa1250820-mRNA-1;Parent=Msa1250820;Name=Msa1250820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=108|1|1|1|1|1|5|292|312 |
| chr8_2 | exon | 46600323 | 46600806 | 46600323 | ID=Msa1250820-mRNA-1:exon:14053;Parent=Msa1250820-mRNA-1 |
| chr8_2 | exon | 46603232 | 46603289 | 46603232 | ID=Msa1250820-mRNA-1:exon:14054;Parent=Msa1250820-mRNA-1 |
| chr8_2 | exon | 46603767 | 46603850 | 46603767 | ID=Msa1250820-mRNA-1:exon:14055;Parent=Msa1250820-mRNA-1 |
| chr8_2 | exon | 46603947 | 46604088 | 46603947 | ID=Msa1250820-mRNA-1:exon:14056;Parent=Msa1250820-mRNA-1 |
| chr8_2 | exon | 46604602 | 46605172 | 46604602 | ID=Msa1250820-mRNA-1:exon:14057;Parent=Msa1250820-mRNA-1 |
| chr8_2 | five_prime_UTR | 46600323 | 46600430 | 46600323 | ID=Msa1250820-mRNA-1:five_prime_utr;Parent=Msa1250820-mRNA-1 |
| chr8_2 | CDS | 46600431 | 46600806 | 46600431 | ID=Msa1250820-mRNA-1:cds;Parent=Msa1250820-mRNA-1 |
| chr8_2 | CDS | 46603232 | 46603289 | 46603232 | ID=Msa1250820-mRNA-1:cds;Parent=Msa1250820-mRNA-1 |
| chr8_2 | CDS | 46603767 | 46603850 | 46603767 | ID=Msa1250820-mRNA-1:cds;Parent=Msa1250820-mRNA-1 |
| chr8_2 | CDS | 46603947 | 46604088 | 46603947 | ID=Msa1250820-mRNA-1:cds;Parent=Msa1250820-mRNA-1 |
| chr8_2 | CDS | 46604602 | 46604880 | 46604602 | ID=Msa1250820-mRNA-1:cds;Parent=Msa1250820-mRNA-1 |
| chr8_2 | three_prime_UTR | 46604881 | 46605172 | 46604881 | ID=Msa1250820-mRNA-1:three_prime_utr;Parent=Msa1250820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
