AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1327550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327550 MtrunA17_Chr8g0366111 93.478 92 6 0 1 92 267 358 1.94e-57 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1327550 AT2G03800.1 68.421 95 26 1 1 91 222 316 2.32e-42 140
Msa1327550 AT2G03800.2 68.421 95 26 1 1 91 266 360 3.72e-42 141

Find 97 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACATTTGTTTCTCCTTT+TGG 0.150136 8_4:-44939428 None:intergenic
TGGGTTGGTCACCTACTTTC+TGG 0.174476 8_4:+44939383 Msa1327550:CDS
AACACTCAATAAAAGTAATT+TGG 0.197331 8_4:-44939851 None:intergenic
CATACATTTATTATCAATAT+AGG 0.230949 8_4:-44940151 None:intergenic
TATGTTCCTATGTATTTATT+TGG 0.233322 8_4:+44940118 Msa1327550:three_prime_UTR
ACCTATTCATAAAGTAGATT+TGG 0.239756 8_4:-44937133 None:intergenic
GCGGAGCAGAATATTAAAAT+TGG 0.268594 8_4:+44939824 Msa1327550:CDS
TAGGGTGAAATGAAGCATTT+TGG 0.270338 8_4:-44937274 None:intergenic
AATATAAGAAAGATGATGTT+TGG 0.307387 8_4:+44939363 Msa1327550:intron
TCACCTACTTTCTGGATATT+CGG 0.318220 8_4:+44939391 Msa1327550:CDS
ATACATTTATTATCAATATA+GGG 0.327488 8_4:-44940150 None:intergenic
GAGAGAAGAGTGGACGTCTT+AGG 0.335666 8_4:+44937102 Msa1327550:five_prime_UTR
TATGTTGAATGCAGATGAAT+AGG 0.336088 8_4:+44936759 Msa1327550:intron
ACTTTATGAATAGGTTTAGA+AGG 0.338395 8_4:+44937141 Msa1327550:five_prime_UTR
CCTATTCATAAAGTAGATTT+GGG 0.350943 8_4:-44937132 None:intergenic
GATAAGAAGAAAGTCCTTCT+TGG 0.358937 8_4:+44938937 Msa1327550:five_prime_UTR
CCCAAATCTACTTTATGAAT+AGG 0.362708 8_4:+44937132 Msa1327550:five_prime_UTR
CTTCTTTGAGTATTGGGCTT+GGG 0.368437 8_4:-44937251 None:intergenic
GAATAGAGAACTAGAGGGTT+TGG 0.372164 8_4:+44936641 Msa1327550:five_prime_UTR
AGAGAGACTCTGAGTAGAAA+AGG 0.378080 8_4:+44937004 Msa1327550:five_prime_UTR
GGAGAAACAAATGTAGAGAT+TGG 0.379058 8_4:+44939434 Msa1327550:CDS
CTTGTATATCAATTTACTGC+TGG 0.387876 8_4:+44937063 Msa1327550:five_prime_UTR
GCTTCTTTGAGTATTGGGCT+TGG 0.396597 8_4:-44937252 None:intergenic
ACATTATGTGCCTCGGCATA+TGG 0.407678 8_4:+44938972 Msa1327550:exon
TTCCTTTGTAGTGGCTGCAT+GGG 0.408759 8_4:+44937204 Msa1327550:five_prime_UTR
AAGATATTACTTATTAGAAC+AGG 0.416157 8_4:-44936823 None:intergenic
TGGTACTCTCCCATCTCTAA+TGG 0.416322 8_4:+44937445 Msa1327550:five_prime_UTR
AATTTACTGCAGGAGTTTCA+AGG 0.417491 8_4:+44939769 Msa1327550:intron
TTTAAGATACACAGAAATAG+AGG 0.428720 8_4:+44937419 Msa1327550:five_prime_UTR
GAAAAGGGAATGCTAGGCTT+AGG 0.432057 8_4:-44937293 None:intergenic
AACTCCAAGGATCATGCTCC+CGG 0.441474 8_4:-44937180 None:intergenic
TGAGCTTGATCATTACTCTC+AGG 0.443329 8_4:+44937382 Msa1327550:five_prime_UTR
TATTTAGATTTGCTTGTACA+TGG 0.447753 8_4:+44936522 None:intergenic
TTGTATATCAATTTACTGCT+GGG 0.451140 8_4:+44937064 Msa1327550:five_prime_UTR
ATAAGAAGAAAGTCCTTCTT+GGG 0.451631 8_4:+44938938 Msa1327550:five_prime_UTR
ATTCCTTTGTAGTGGCTGCA+TGG 0.459322 8_4:+44937203 Msa1327550:five_prime_UTR
AAACTATATACTTATAGCCT+TGG 0.461679 8_4:+44936592 Msa1327550:five_prime_UTR
AAATGCTAACCATTTGAGAT+AGG 0.464939 8_4:-44936674 None:intergenic
TTATTGAGTGTTGATTTAAG+AGG 0.465194 8_4:+44939862 Msa1327550:exon
TTGCTTGTACATGGTGGAAA+GGG 0.468644 8_4:+44936531 Msa1327550:five_prime_UTR
ATACACAGAAATAGAGGATC+TGG 0.492481 8_4:+44937425 Msa1327550:five_prime_UTR
ATCCCCGGGAGCATGATCCT+TGG 0.493473 8_4:+44937176 Msa1327550:five_prime_UTR
TTCTGGATATTCGGTGCCAA+TGG 0.497093 8_4:+44939400 Msa1327550:CDS
ATATAAGAAAGATGATGTTT+GGG 0.499522 8_4:+44939364 Msa1327550:intron
TGCTTCGAAAAGGGAATGCT+AGG 0.499690 8_4:-44937299 None:intergenic
AAAAGGGAATGCTAGGCTTA+GGG 0.501721 8_4:-44937292 None:intergenic
TTGGAGTTATTCCTTTGTAG+TGG 0.503391 8_4:+44937195 Msa1327550:five_prime_UTR
ACTCACTATCCTATCTCAAA+TGG 0.503518 8_4:+44936665 Msa1327550:five_prime_UTR
ATGTAGAGATTGGAGGAACT+TGG 0.504571 8_4:+44939444 Msa1327550:CDS
GTCCTTCTTGGGATAGGCGG+TGG 0.509514 8_4:+44938949 Msa1327550:five_prime_UTR
ATTTACTGCAGGAGTTTCAA+GGG 0.511764 8_4:+44939770 Msa1327550:intron
TTCATAAAGTAGATTTGGGA+AGG 0.518265 8_4:-44937128 None:intergenic
GAGAGACTCTGAGTAGAAAA+GGG 0.522752 8_4:+44937005 Msa1327550:five_prime_UTR
TGGCAGAAGAATGCCATCAC+AGG 0.525499 8_4:+44939794 Msa1327550:CDS
TGCGCAATAATTTCGCCACC+AGG 0.526598 8_4:-44939512 None:intergenic
ATTTAGGCGAAATAGATTTG+TGG 0.527706 8_4:-44937326 None:intergenic
GGAGCCATTGTCTGATCCCC+GGG 0.530234 8_4:+44937162 Msa1327550:five_prime_UTR
TATAAGTATATAGTTTCCTC+AGG 0.531507 8_4:-44936585 None:intergenic
AAGAAAGATGATGTTTGGGT+TGG 0.533495 8_4:+44939368 Msa1327550:intron
TCTTGACAAAACTTCTATAC+CGG 0.540282 8_4:+44937036 Msa1327550:five_prime_UTR
ACAGAACTAACCATTAGAGA+TGG 0.540417 8_4:-44937455 None:intergenic
AAGAAAGTCCTTCTTGGGAT+AGG 0.543921 8_4:+44938943 Msa1327550:five_prime_UTR
AGGAGCCATTGTCTGATCCC+CGG 0.544993 8_4:+44937161 Msa1327550:five_prime_UTR
ACTGCAGGAGTTTCAAGGGC+TGG 0.545446 8_4:+44939774 Msa1327550:intron
ACTCCAAGGATCATGCTCCC+GGG 0.546075 8_4:-44937179 None:intergenic
TTTGCTTGTACATGGTGGAA+AGG 0.554188 8_4:+44936530 Msa1327550:five_prime_UTR
GAAACAAATGTAGAGATTGG+AGG 0.558298 8_4:+44939437 Msa1327550:CDS
GTTGAATGCAGATGAATAGG+AGG 0.559906 8_4:+44936762 Msa1327550:intron
AATTCGCCAAATAAATACAT+AGG 0.564283 8_4:-44940124 None:intergenic
GAGCTTGATCATTACTCTCA+GGG 0.564774 8_4:+44937383 Msa1327550:five_prime_UTR
CTCCGCGAGGAATCCTGTGA+TGG 0.566946 8_4:-44939807 None:intergenic
TGTATATCAATTTACTGCTG+GGG 0.577446 8_4:+44937065 Msa1327550:five_prime_UTR
GCACCGAATATCCAGAAAGT+AGG 0.580008 8_4:-44939394 None:intergenic
ATATTTGAATAGAGAACTAG+AGG 0.580052 8_4:+44936635 Msa1327550:five_prime_UTR
GTGCCAATGGAAGATCCAAA+AGG 0.584393 8_4:+44939413 Msa1327550:CDS
CAGAACTAACCATTAGAGAT+GGG 0.586450 8_4:-44937454 None:intergenic
GTCTATAAAAGCTGCATACG+AGG 0.587763 8_4:+44939472 Msa1327550:CDS
GCGGTGGACATTATGTGCCT+CGG 0.594821 8_4:+44938965 Msa1327550:five_prime_UTR
AATGTGCAGATTGCAGACAT+AGG 0.599856 8_4:+44939903 Msa1327550:three_prime_UTR
AAATGTTGACGAAGCGTGGA+TGG 0.600488 8_4:+44937358 Msa1327550:five_prime_UTR
TAACAATCATTTAACTCCTG+AGG 0.610582 8_4:+44936569 Msa1327550:five_prime_UTR
CTCCAAGGATCATGCTCCCG+GGG 0.612730 8_4:-44937178 None:intergenic
TTATTGCGCATCTTGACCAA+AGG 0.621535 8_4:+44939525 Msa1327550:CDS
TCTGCAGATATGCTTGTCCA+TGG 0.622203 8_4:+44936974 Msa1327550:intron
TGCTCCCGGGGATCAGACAA+TGG 0.622929 8_4:-44937166 None:intergenic
GTCCACCGCCTATCCCAAGA+AGG 0.624058 8_4:-44938951 None:intergenic
AACCCATGCAGCCACTACAA+AGG 0.626089 8_4:-44937206 None:intergenic
AAATTGATATACAAGACTAC+CGG 0.628626 8_4:-44937055 None:intergenic
TTAGATTTGCTTGTACATGG+TGG 0.636226 8_4:+44936525 None:intergenic
TATTTGAATAGAGAACTAGA+GGG 0.639505 8_4:+44936636 Msa1327550:five_prime_UTR
AAAGTCCTTCTTGGGATAGG+CGG 0.642444 8_4:+44938946 Msa1327550:five_prime_UTR
GAGTCTCTCTCTTTCCACCA+TGG 0.651572 8_4:-44936991 None:intergenic
GCAGATATGCTTGTCCATGG+TGG 0.660110 8_4:+44936977 Msa1327550:intron
ACTACAAAGGAATAACTCCA+AGG 0.663127 8_4:-44937193 None:intergenic
AACACTACATCCATATGCCG+AGG 0.663300 8_4:-44938982 None:intergenic
TGCCATCACAGGATTCCTCG+CGG 0.720531 8_4:+44939805 Msa1327550:CDS
ATACTAAACAGAGAGAAGAG+TGG 0.722072 8_4:+44937092 Msa1327550:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTCTTTATAATTT+AGG - chr8_4:44937345-44937364 None:intergenic 10.0%
!! ATAAAAAAGAAAAATAAAAC+GGG - chr8_4:44938306-44938325 None:intergenic 10.0%
!!! AAGTTAATTTTTTTTATTCA+AGG - chr8_4:44939325-44939344 None:intergenic 10.0%
!!! GTTTGATATATATATTTTTT+TGG + chr8_4:44939672-44939691 Msa1327550:intron 10.0%
!! ATACATTTATTATCAATATA+GGG - chr8_4:44940153-44940172 None:intergenic 10.0%
!!! TTCAATGTTAAAATTGTTTT+AGG + chr8_4:44936787-44936806 Msa1327550:five_prime_UTR 15.0%
!!! CTAATAAGTAATATCTTTTA+AGG + chr8_4:44936829-44936848 Msa1327550:five_prime_UTR 15.0%
!!! CCTTAACTTAAATTATTTTT+GGG + chr8_4:44938264-44938283 Msa1327550:intron 15.0%
!! CATTGATAAAAAATTTAACT+TGG - chr8_4:44938807-44938826 None:intergenic 15.0%
!!! TTTTAGAGATTTTTAATAGA+AGG + chr8_4:44939997-44940016 Msa1327550:three_prime_UTR 15.0%
!! CATACATTTATTATCAATAT+AGG - chr8_4:44940154-44940173 None:intergenic 15.0%
!! AAGATATTACTTATTAGAAC+AGG - chr8_4:44936826-44936845 None:intergenic 20.0%
!!! TTCTGTAATTTTTCATTTTG+TGG + chr8_4:44937483-44937502 Msa1327550:intron 20.0%
!!! TTGATTTCAACTTTTAGATT+AGG + chr8_4:44937706-44937725 Msa1327550:intron 20.0%
!!! GCCTTAACTTAAATTATTTT+TGG + chr8_4:44938263-44938282 Msa1327550:intron 20.0%
!!! CCCAAAAATAATTTAAGTTA+AGG - chr8_4:44938267-44938286 None:intergenic 20.0%
!! TTATTTATAAATACCATGTC+AGG + chr8_4:44938334-44938353 Msa1327550:intron 20.0%
!! TTCTATAATGAAAAATGAGA+AGG - chr8_4:44938761-44938780 None:intergenic 20.0%
!!! TTAAAGTTTCCTTCTAAAAT+CGG + chr8_4:44938862-44938881 Msa1327550:intron 20.0%
!! ATTATGGGAATAAATTACAT+TGG + chr8_4:44939082-44939101 Msa1327550:intron 20.0%
!!! TTTTTTTATTCAAGGTAACA+AGG - chr8_4:44939317-44939336 None:intergenic 20.0%
!! AATATAAGAAAGATGATGTT+TGG + chr8_4:44939363-44939382 Msa1327550:intron 20.0%
!! ATATAAGAAAGATGATGTTT+GGG + chr8_4:44939364-44939383 Msa1327550:intron 20.0%
!! AACACTCAATAAAAGTAATT+TGG - chr8_4:44939854-44939873 None:intergenic 20.0%
!!! CTCTATTAGAAATAATTTTC+AGG + chr8_4:44940070-44940089 Msa1327550:three_prime_UTR 20.0%
!! TATGTTCCTATGTATTTATT+TGG + chr8_4:44940118-44940137 Msa1327550:three_prime_UTR 20.0%
! TATAAGTATATAGTTTCCTC+AGG - chr8_4:44936588-44936607 None:intergenic 25.0%
! AAACTATATACTTATAGCCT+TGG + chr8_4:44936592-44936611 Msa1327550:five_prime_UTR 25.0%
! ATATTTGAATAGAGAACTAG+AGG + chr8_4:44936635-44936654 Msa1327550:five_prime_UTR 25.0%
! TATTTGAATAGAGAACTAGA+GGG + chr8_4:44936636-44936655 Msa1327550:five_prime_UTR 25.0%
! AAATTGATATACAAGACTAC+CGG - chr8_4:44937058-44937077 None:intergenic 25.0%
! TTGTATATCAATTTACTGCT+GGG + chr8_4:44937064-44937083 Msa1327550:five_prime_UTR 25.0%
! CCTATTCATAAAGTAGATTT+GGG - chr8_4:44937135-44937154 None:intergenic 25.0%
! ACCTATTCATAAAGTAGATT+TGG - chr8_4:44937136-44937155 None:intergenic 25.0%
! ACTTTATGAATAGGTTTAGA+AGG + chr8_4:44937141-44937160 Msa1327550:five_prime_UTR 25.0%
!! TTTAAGATACACAGAAATAG+AGG + chr8_4:44937419-44937438 Msa1327550:five_prime_UTR 25.0%
!! TGTAATTTTTCATTTTGTGG+TGG + chr8_4:44937486-44937505 Msa1327550:intron 25.0%
! TGTTAAATGAAGATTGTACT+TGG - chr8_4:44937527-44937546 None:intergenic 25.0%
! AACATTATATAGAAGACACA+AGG + chr8_4:44937672-44937691 Msa1327550:intron 25.0%
! TTTGAAAAATTTCACTGAGA+AGG - chr8_4:44937955-44937974 None:intergenic 25.0%
!! TTTAAGTTAAGGCTGAATAA+AGG - chr8_4:44938256-44938275 None:intergenic 25.0%
!!! CTTAAATTATTTTTGGGACT+TGG + chr8_4:44938270-44938289 Msa1327550:intron 25.0%
! AAAAGAAAAATAAAACGGGA+AGG - chr8_4:44938302-44938321 None:intergenic 25.0%
! AGTACACAGAAAATTATGTT+AGG - chr8_4:44938427-44938446 None:intergenic 25.0%
! CTGAATTGCATATATGTAAT+TGG + chr8_4:44938528-44938547 Msa1327550:intron 25.0%
! AATGAACCAAACCTAAATAT+TGG - chr8_4:44938835-44938854 None:intergenic 25.0%
!!! AAATTTTCACCGATTTTAGA+AGG - chr8_4:44938874-44938893 None:intergenic 25.0%
! CAATTATAAAGTCACTGAAA+TGG - chr8_4:44939016-44939035 None:intergenic 25.0%
!! TGAATTTTCTGATTGATGAA+AGG + chr8_4:44939034-44939053 Msa1327550:intron 25.0%
!! GAATTTTCTGATTGATGAAA+GGG + chr8_4:44939035-44939054 Msa1327550:intron 25.0%
! TGCACACTTAAATAGATTAT+GGG + chr8_4:44939067-44939086 Msa1327550:intron 25.0%
! AATTACATTGGTGAAAAACA+TGG + chr8_4:44939094-44939113 Msa1327550:intron 25.0%
! ATTACATTGGTGAAAAACAT+GGG + chr8_4:44939095-44939114 Msa1327550:intron 25.0%
! AGAACTCAAGAGTAAAAAAA+AGG - chr8_4:44939233-44939252 None:intergenic 25.0%
!! TACGATTTGAAACAGATAAT+AGG + chr8_4:44939703-44939722 Msa1327550:intron 25.0%
!!! TTTACTCTAAAATTTACTGC+AGG + chr8_4:44939759-44939778 Msa1327550:intron 25.0%
!!! TTATTGAGTGTTGATTTAAG+AGG + chr8_4:44939862-44939881 Msa1327550:exon 25.0%
! AATTCGCCAAATAAATACAT+AGG - chr8_4:44940127-44940146 None:intergenic 25.0%
TAACAATCATTTAACTCCTG+AGG + chr8_4:44936569-44936588 Msa1327550:five_prime_UTR 30.0%
!! AAAAAATGGATTGATGTCCA+AGG - chr8_4:44936612-44936631 None:intergenic 30.0%
! AAATGCTAACCATTTGAGAT+AGG - chr8_4:44936677-44936696 None:intergenic 30.0%
ACACAATGACAAGAAATAGA+AGG - chr8_4:44936710-44936729 None:intergenic 30.0%
!!! TGTCATTGTGTTGTTTTGTT+TGG + chr8_4:44936719-44936738 Msa1327550:intron 30.0%
TATGTTGAATGCAGATGAAT+AGG + chr8_4:44936759-44936778 Msa1327550:intron 30.0%
ACGTTAACACATGTCATATT+AGG + chr8_4:44936853-44936872 Msa1327550:intron 30.0%
TCTTGACAAAACTTCTATAC+CGG + chr8_4:44937036-44937055 Msa1327550:five_prime_UTR 30.0%
CTTGTATATCAATTTACTGC+TGG + chr8_4:44937063-44937082 Msa1327550:five_prime_UTR 30.0%
TGTATATCAATTTACTGCTG+GGG + chr8_4:44937065-44937084 Msa1327550:five_prime_UTR 30.0%
TTCATAAAGTAGATTTGGGA+AGG - chr8_4:44937131-44937150 None:intergenic 30.0%
CCCAAATCTACTTTATGAAT+AGG + chr8_4:44937132-44937151 Msa1327550:five_prime_UTR 30.0%
!!! TTTTGGCTTCTTTGAGTATT+GGG - chr8_4:44937260-44937279 None:intergenic 30.0%
!!! ATTTTGGCTTCTTTGAGTAT+TGG - chr8_4:44937261-44937280 None:intergenic 30.0%
ATTTAGGCGAAATAGATTTG+TGG - chr8_4:44937329-44937348 None:intergenic 30.0%
AGTGCTAAAACAGAATTTGA+TGG - chr8_4:44937581-44937600 None:intergenic 30.0%
! CAACTTTTAGATTAGGTAAC+AGG + chr8_4:44937713-44937732 Msa1327550:intron 30.0%
TTAAAAAGCCTTCTTAGTAC+TGG + chr8_4:44937736-44937755 Msa1327550:intron 30.0%
! TTCAATCTGTTTCTTCTTCT+TGG + chr8_4:44938051-44938070 Msa1327550:intron 30.0%
TTTCTTCTTCTTGGATAACT+AGG + chr8_4:44938060-44938079 Msa1327550:intron 30.0%
TAGCAAATTAATCAGACACT+TGG + chr8_4:44938098-44938117 Msa1327550:intron 30.0%
AACTGCTCATAGTATTACAA+GGG - chr8_4:44938169-44938188 None:intergenic 30.0%
TCTCTCTTATGTCTGAAAAA+TGG + chr8_4:44938217-44938236 Msa1327550:intron 30.0%
ATGCATGAAGGAATAATATG+AGG - chr8_4:44938486-44938505 None:intergenic 30.0%
! CATGATTTTTGAATGCATGA+AGG - chr8_4:44938498-44938517 None:intergenic 30.0%
ATATGCAATTCAGAAAGCTT+AGG - chr8_4:44938521-44938540 None:intergenic 30.0%
ATAAGAAGAAAGTCCTTCTT+GGG + chr8_4:44938938-44938957 Msa1327550:five_prime_UTR 30.0%
CTGCACACTTAAATAGATTA+TGG + chr8_4:44939066-44939085 Msa1327550:intron 30.0%
!! TCTACATTTGTTTCTCCTTT+TGG - chr8_4:44939431-44939450 None:intergenic 30.0%
ATGCACATTAAACTTACCTT+TGG - chr8_4:44939544-44939563 None:intergenic 30.0%
TGCAAACAATTGATTACAGA+AGG - chr8_4:44939570-44939589 None:intergenic 30.0%
!! GATCACTTTTAATGCAAATC+TGG - chr8_4:44939950-44939969 None:intergenic 30.0%
ACTCACTATCCTATCTCAAA+TGG + chr8_4:44936665-44936684 Msa1327550:five_prime_UTR 35.0%
AGACAGCATCTCAGATAATT+TGG - chr8_4:44936888-44936907 None:intergenic 35.0%
ATACTAAACAGAGAGAAGAG+TGG + chr8_4:44937092-44937111 Msa1327550:five_prime_UTR 35.0%
ACTACAAAGGAATAACTCCA+AGG - chr8_4:44937196-44937215 None:intergenic 35.0%
TTGGAGTTATTCCTTTGTAG+TGG + chr8_4:44937195-44937214 Msa1327550:five_prime_UTR 35.0%
!! TAGGGTGAAATGAAGCATTT+TGG - chr8_4:44937277-44937296 None:intergenic 35.0%
ATACACAGAAATAGAGGATC+TGG + chr8_4:44937425-44937444 Msa1327550:five_prime_UTR 35.0%
CAGAACTAACCATTAGAGAT+GGG - chr8_4:44937457-44937476 None:intergenic 35.0%
ACAGAACTAACCATTAGAGA+TGG - chr8_4:44937458-44937477 None:intergenic 35.0%
CTCATACTTAAACTAACTGC+AGG - chr8_4:44937870-44937889 None:intergenic 35.0%
! CTGCAGTTAGTTTAAGTATG+AGG + chr8_4:44937868-44937887 Msa1327550:intron 35.0%
ATTTCACTGAGAAGGATCAT+CGG - chr8_4:44937947-44937966 None:intergenic 35.0%
CAACTGCTCATAGTATTACA+AGG - chr8_4:44938170-44938189 None:intergenic 35.0%
TTTCAGACATAAGAGAGAAG+AGG - chr8_4:44938215-44938234 None:intergenic 35.0%
AAGTTAAGGCTGAATAAAGG+AGG - chr8_4:44938253-44938272 None:intergenic 35.0%
AGAAAAATAAAACGGGAAGG+AGG - chr8_4:44938299-44938318 None:intergenic 35.0%
GTTTCATCATAAACCTGACA+TGG - chr8_4:44938350-44938369 None:intergenic 35.0%
TCTAGCTATGTCATTGCTAA+TGG - chr8_4:44938372-44938391 None:intergenic 35.0%
GATTGTGAGATTGCACTTAT+AGG + chr8_4:44938555-44938574 Msa1327550:intron 35.0%
TCAATGCAGAGCCAATATTT+AGG + chr8_4:44938821-44938840 Msa1327550:intron 35.0%
GATAAGAAGAAAGTCCTTCT+TGG + chr8_4:44938937-44938956 Msa1327550:five_prime_UTR 35.0%
AAGAAAGATGATGTTTGGGT+TGG + chr8_4:44939368-44939387 Msa1327550:intron 35.0%
TCACCTACTTTCTGGATATT+CGG + chr8_4:44939391-44939410 Msa1327550:CDS 35.0%
GGAGAAACAAATGTAGAGAT+TGG + chr8_4:44939434-44939453 Msa1327550:CDS 35.0%
GAAACAAATGTAGAGATTGG+AGG + chr8_4:44939437-44939456 Msa1327550:CDS 35.0%
AATTTACTGCAGGAGTTTCA+AGG + chr8_4:44939769-44939788 Msa1327550:intron 35.0%
ATTTACTGCAGGAGTTTCAA+GGG + chr8_4:44939770-44939789 Msa1327550:intron 35.0%
GCGGAGCAGAATATTAAAAT+TGG + chr8_4:44939824-44939843 Msa1327550:CDS 35.0%
!! TAATTTTCAGGCGCTTTAGA+AGG + chr8_4:44940082-44940101 Msa1327550:three_prime_UTR 35.0%
! TTTGCTTGTACATGGTGGAA+AGG + chr8_4:44936530-44936549 Msa1327550:five_prime_UTR 40.0%
! TTGCTTGTACATGGTGGAAA+GGG + chr8_4:44936531-44936550 Msa1327550:five_prime_UTR 40.0%
GAATAGAGAACTAGAGGGTT+TGG + chr8_4:44936641-44936660 Msa1327550:five_prime_UTR 40.0%
GTTGAATGCAGATGAATAGG+AGG + chr8_4:44936762-44936781 Msa1327550:intron 40.0%
AGAGAGACTCTGAGTAGAAA+AGG + chr8_4:44937004-44937023 Msa1327550:five_prime_UTR 40.0%
GAGAGACTCTGAGTAGAAAA+GGG + chr8_4:44937005-44937024 Msa1327550:five_prime_UTR 40.0%
!! CTTCTTTGAGTATTGGGCTT+GGG - chr8_4:44937254-44937273 None:intergenic 40.0%
AAAAGGGAATGCTAGGCTTA+GGG - chr8_4:44937295-44937314 None:intergenic 40.0%
! TGTGGCTTTTGCTTCGAAAA+GGG - chr8_4:44937311-44937330 None:intergenic 40.0%
! TTGTGGCTTTTGCTTCGAAA+AGG - chr8_4:44937312-44937331 None:intergenic 40.0%
AGAAAAATGTTGACGAAGCG+TGG + chr8_4:44937354-44937373 Msa1327550:five_prime_UTR 40.0%
TGAGCTTGATCATTACTCTC+AGG + chr8_4:44937382-44937401 Msa1327550:five_prime_UTR 40.0%
GAGCTTGATCATTACTCTCA+GGG + chr8_4:44937383-44937402 Msa1327550:five_prime_UTR 40.0%
! TGTGGTGGTTTGTAACTCTT+TGG + chr8_4:44937501-44937520 Msa1327550:intron 40.0%
! AGATACTGATAATGCAGCCA+TGG + chr8_4:44937783-44937802 Msa1327550:intron 40.0%
TTCCCTTTCCTTGAAGAAGA+GGG - chr8_4:44937826-44937845 None:intergenic 40.0%
ATTCCCTTTCCTTGAAGAAG+AGG - chr8_4:44937827-44937846 None:intergenic 40.0%
ACTAACTGCAGGATTTCAGA+AGG - chr8_4:44937859-44937878 None:intergenic 40.0%
TTAAGTATGAGGCTCACACT+CGG + chr8_4:44937879-44937898 Msa1327550:intron 40.0%
! TCGGCTTGCATGAAAATTCA+GGG - chr8_4:44937928-44937947 None:intergenic 40.0%
!! ATCGGCTTGCATGAAAATTC+AGG - chr8_4:44937929-44937948 None:intergenic 40.0%
TGAAGAATTGCTTCCTTGCT+AGG + chr8_4:44938121-44938140 Msa1327550:intron 40.0%
AAGAGAGAAGAGGTTTGCAA+TGG - chr8_4:44938205-44938224 None:intergenic 40.0%
GTTGTGAACTTGTGATTGAC+TGG + chr8_4:44938452-44938471 Msa1327550:intron 40.0%
GTGCTTACAGTGAGACTATT+TGG + chr8_4:44938702-44938721 Msa1327550:intron 40.0%
!! AATGTCCCTTTTGAGCATTG+AGG + chr8_4:44938735-44938754 Msa1327550:intron 40.0%
! GCAGAGCCAATATTTAGGTT+TGG + chr8_4:44938826-44938845 Msa1327550:intron 40.0%
AAGAAAGTCCTTCTTGGGAT+AGG + chr8_4:44938943-44938962 Msa1327550:five_prime_UTR 40.0%
CTCCACTGGAATGAAGATAA+AGG + chr8_4:44939125-44939144 Msa1327550:intron 40.0%
CACCTTTATCTTCATTCCAG+TGG - chr8_4:44939130-44939149 None:intergenic 40.0%
CACTGGAATGAAGATAAAGG+TGG + chr8_4:44939128-44939147 Msa1327550:intron 40.0%
! TCTCCTTTTGGATCTTCCAT+TGG - chr8_4:44939419-44939438 None:intergenic 40.0%
ATGTAGAGATTGGAGGAACT+TGG + chr8_4:44939444-44939463 Msa1327550:CDS 40.0%
GTCTATAAAAGCTGCATACG+AGG + chr8_4:44939472-44939491 Msa1327550:CDS 40.0%
!! GCAACTAAATCTGCTTTTCC+TGG + chr8_4:44939494-44939513 Msa1327550:CDS 40.0%
!! ACTAAATCTGCTTTTCCTGG+TGG + chr8_4:44939497-44939516 Msa1327550:CDS 40.0%
TTATTGCGCATCTTGACCAA+AGG + chr8_4:44939525-44939544 Msa1327550:CDS 40.0%
! TTTTAATATTCTGCTCCGCG+AGG - chr8_4:44939823-44939842 None:intergenic 40.0%
AATGTGCAGATTGCAGACAT+AGG + chr8_4:44939903-44939922 Msa1327550:three_prime_UTR 40.0%
TCTGCAGATATGCTTGTCCA+TGG + chr8_4:44936974-44936993 Msa1327550:intron 45.0%
ATTCCTTTGTAGTGGCTGCA+TGG + chr8_4:44937203-44937222 Msa1327550:five_prime_UTR 45.0%
TTCCTTTGTAGTGGCTGCAT+GGG + chr8_4:44937204-44937223 Msa1327550:five_prime_UTR 45.0%
!! GCTTCTTTGAGTATTGGGCT+TGG - chr8_4:44937255-44937274 None:intergenic 45.0%
GAAAAGGGAATGCTAGGCTT+AGG - chr8_4:44937296-44937315 None:intergenic 45.0%
TGCTTCGAAAAGGGAATGCT+AGG - chr8_4:44937302-44937321 None:intergenic 45.0%
AAATGTTGACGAAGCGTGGA+TGG + chr8_4:44937358-44937377 Msa1327550:five_prime_UTR 45.0%
TGGTACTCTCCCATCTCTAA+TGG + chr8_4:44937445-44937464 Msa1327550:five_prime_UTR 45.0%
!! AAGCCTTCTTAGTACTGGCT+AGG + chr8_4:44937741-44937760 Msa1327550:intron 45.0%
ACACCTAGCCAGTACTAAGA+AGG - chr8_4:44937747-44937766 None:intergenic 45.0%
TCTCTTCTCCCTCTTCTTCA+AGG + chr8_4:44937815-44937834 Msa1327550:intron 45.0%
TCTCCCTCTTCTTCAAGGAA+AGG + chr8_4:44937820-44937839 Msa1327550:intron 45.0%
CTCCCTCTTCTTCAAGGAAA+GGG + chr8_4:44937821-44937840 Msa1327550:intron 45.0%
CGGCTTGCATGAAAATTCAG+GGG - chr8_4:44937927-44937946 None:intergenic 45.0%
GTAGCAGAAGCAGAAACAGA+AGG - chr8_4:44938031-44938050 None:intergenic 45.0%
ACATACAGAGTCACCTAGCA+AGG - chr8_4:44938137-44938156 None:intergenic 45.0%
GAAGGCCTCAATGCTCAAAA+GGG - chr8_4:44938743-44938762 None:intergenic 45.0%
AGAAGGCCTCAATGCTCAAA+AGG - chr8_4:44938744-44938763 None:intergenic 45.0%
ATTCTCACACTCTTCCTGCA+GGG + chr8_4:44938909-44938928 Msa1327550:intron 45.0%
CTTCTTATCATTCTCCCTGC+AGG - chr8_4:44938926-44938945 None:intergenic 45.0%
AAAGTCCTTCTTGGGATAGG+CGG + chr8_4:44938946-44938965 Msa1327550:five_prime_UTR 45.0%
ACATTATGTGCCTCGGCATA+TGG + chr8_4:44938972-44938991 Msa1327550:exon 45.0%
AACACTACATCCATATGCCG+AGG - chr8_4:44938985-44939004 None:intergenic 45.0%
ACATGGGAGTTAAACTCCAC+TGG + chr8_4:44939111-44939130 Msa1327550:intron 45.0%
GCACCGAATATCCAGAAAGT+AGG - chr8_4:44939397-44939416 None:intergenic 45.0%
!! TTCTGGATATTCGGTGCCAA+TGG + chr8_4:44939400-44939419 Msa1327550:CDS 45.0%
GTGCCAATGGAAGATCCAAA+AGG + chr8_4:44939413-44939432 Msa1327550:CDS 45.0%
!! TATTCAAATATATAAAAAAA+TGG - chr8_4:44936626-44936645 None:intergenic 5.0%
!! TATAAAAAAGAAAAATAAAA+CGG - chr8_4:44938307-44938326 None:intergenic 5.0%
!!! TTTGATATATATATTTTTTT+GGG + chr8_4:44939673-44939692 Msa1327550:intron 5.0%
GCAGATATGCTTGTCCATGG+TGG + chr8_4:44936977-44936996 Msa1327550:intron 50.0%
GAGTCTCTCTCTTTCCACCA+TGG - chr8_4:44936994-44937013 None:intergenic 50.0%
GAGAGAAGAGTGGACGTCTT+AGG + chr8_4:44937102-44937121 Msa1327550:five_prime_UTR 50.0%
AACTCCAAGGATCATGCTCC+CGG - chr8_4:44937183-44937202 None:intergenic 50.0%
AACCCATGCAGCCACTACAA+AGG - chr8_4:44937209-44937228 None:intergenic 50.0%
! CTGATAATGCAGCCATGGTG+AGG + chr8_4:44937788-44937807 Msa1327550:intron 50.0%
AGAAGAGAGAAGCCTCACCA+TGG - chr8_4:44937803-44937822 None:intergenic 50.0%
GATTCTCACACTCTTCCTGC+AGG + chr8_4:44938908-44938927 Msa1327550:intron 50.0%
!! TGGGTTGGTCACCTACTTTC+TGG + chr8_4:44939383-44939402 Msa1327550:CDS 50.0%
TGCGCAATAATTTCGCCACC+AGG - chr8_4:44939515-44939534 None:intergenic 50.0%
TGGCAGAAGAATGCCATCAC+AGG + chr8_4:44939794-44939813 Msa1327550:CDS 50.0%
AGGAGCCATTGTCTGATCCC+CGG + chr8_4:44937161-44937180 Msa1327550:five_prime_UTR 55.0%
ACTCCAAGGATCATGCTCCC+GGG - chr8_4:44937182-44937201 None:intergenic 55.0%
GTATGAGGCTCACACTCGGA+AGG + chr8_4:44937883-44937902 Msa1327550:intron 55.0%
GCGGTGGACATTATGTGCCT+CGG + chr8_4:44938965-44938984 Msa1327550:five_prime_UTR 55.0%
ACTGCAGGAGTTTCAAGGGC+TGG + chr8_4:44939774-44939793 Msa1327550:intron 55.0%
TGCCATCACAGGATTCCTCG+CGG + chr8_4:44939805-44939824 Msa1327550:CDS 55.0%
GGAGCCATTGTCTGATCCCC+GGG + chr8_4:44937162-44937181 Msa1327550:five_prime_UTR 60.0%
TGCTCCCGGGGATCAGACAA+TGG - chr8_4:44937169-44937188 None:intergenic 60.0%
! ATCCCCGGGAGCATGATCCT+TGG + chr8_4:44937176-44937195 Msa1327550:five_prime_UTR 60.0%
CTCCAAGGATCATGCTCCCG+GGG - chr8_4:44937181-44937200 None:intergenic 60.0%
GCTCTCTTCACACGTGCGCA+CGG + chr8_4:44937977-44937996 Msa1327550:intron 60.0%
GTCCTTCTTGGGATAGGCGG+TGG + chr8_4:44938949-44938968 Msa1327550:five_prime_UTR 60.0%
GTCCACCGCCTATCCCAAGA+AGG - chr8_4:44938954-44938973 None:intergenic 60.0%
CTCCGCGAGGAATCCTGTGA+TGG - chr8_4:44939810-44939829 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 44936527 44940211 44936527 ID=Msa1327550;Name=Msa1327550
chr8_4 mRNA 44936527 44940211 44936527 ID=Msa1327550-mRNA-1;Parent=Msa1327550;Name=Msa1327550-mRNA-1;_AED=0.37;_eAED=0.37;_QI=785|1|1|1|0.2|0.16|6|343|92
chr8_4 exon 44936527 44936686 44936527 ID=Msa1327550-mRNA-1:exon:12534;Parent=Msa1327550-mRNA-1
chr8_4 exon 44936773 44936850 44936773 ID=Msa1327550-mRNA-1:exon:12535;Parent=Msa1327550-mRNA-1
chr8_4 exon 44936981 44937466 44936981 ID=Msa1327550-mRNA-1:exon:12536;Parent=Msa1327550-mRNA-1
chr8_4 exon 44938930 44939004 44938930 ID=Msa1327550-mRNA-1:exon:12537;Parent=Msa1327550-mRNA-1
chr8_4 exon 44939370 44939546 44939370 ID=Msa1327550-mRNA-1:exon:12538;Parent=Msa1327550-mRNA-1
chr8_4 exon 44939781 44940211 44939781 ID=Msa1327550-mRNA-1:exon:12539;Parent=Msa1327550-mRNA-1
chr8_4 five_prime_UTR 44936527 44936686 44936527 ID=Msa1327550-mRNA-1:five_prime_utr;Parent=Msa1327550-mRNA-1
chr8_4 five_prime_UTR 44936773 44936850 44936773 ID=Msa1327550-mRNA-1:five_prime_utr;Parent=Msa1327550-mRNA-1
chr8_4 five_prime_UTR 44936981 44937466 44936981 ID=Msa1327550-mRNA-1:five_prime_utr;Parent=Msa1327550-mRNA-1
chr8_4 five_prime_UTR 44938930 44938990 44938930 ID=Msa1327550-mRNA-1:five_prime_utr;Parent=Msa1327550-mRNA-1
chr8_4 CDS 44938991 44939004 44938991 ID=Msa1327550-mRNA-1:cds;Parent=Msa1327550-mRNA-1
chr8_4 CDS 44939370 44939546 44939370 ID=Msa1327550-mRNA-1:cds;Parent=Msa1327550-mRNA-1
chr8_4 CDS 44939781 44939868 44939781 ID=Msa1327550-mRNA-1:cds;Parent=Msa1327550-mRNA-1
chr8_4 three_prime_UTR 44939869 44940211 44939869 ID=Msa1327550-mRNA-1:three_prime_utr;Parent=Msa1327550-mRNA-1
Gene Sequence

>Msa1327550

ATGGATGTAGTGTTGAAAGATGATGTTTGGGTTGGTCACCTACTTTCTGGATATTCGGTGCCAATGGAAGATCCAAAAGGAGAAACAAATGTAGAGATTGGAGGAACTTGGAAACAGTCTATAAAAGCTGCATACGAGGCAACTAAATCTGCTTTTCCTGGTGGCGAAATTATTGCGCATCTTGACCAAAGGAGTTTCAAGGGCTGGCAGAAGAATGCCATCACAGGATTCCTCGCGGAGCAGAATATTAAAATTGGAAAGCCAAATTACTTTTATTGA

Protein sequence

>Msa1327550

MDVVLKDDVWVGHLLSGYSVPMEDPKGETNVEIGGTWKQSIKAAYEATKSAFPGGEIIAHLDQRSFKGWQKNAITGFLAEQNIKIGKPNYFY*