Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197630 | sp|Q9C7T4|BH096_ARATH | 56.872 | 211 | 82 | 3 | 95 | 301 | 114 | 319 | 3.00e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197630 | A0A396GLS4 | 93.610 | 313 | 10 | 3 | 1 | 304 | 11 | 322 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1197630 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1197630 | Msa1291960 | 0.897247 | 1.691167e-76 | -8.615850e-47 |
| Msa1197630 | Msa1334780 | 0.996928 | 2.841845e-234 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197630 | MtrunA17_Chr8g0366551 | 93.610 | 313 | 10 | 3 | 1 | 304 | 11 | 322 | 0.0 | 591 |
| Msa1197630 | MtrunA17_Chr3g0132471 | 49.442 | 269 | 111 | 6 | 46 | 298 | 56 | 315 | 7.81e-82 | 250 |
| Msa1197630 | MtrunA17_Chr7g0273081 | 44.521 | 292 | 135 | 7 | 27 | 301 | 31 | 312 | 7.15e-73 | 227 |
| Msa1197630 | MtrunA17_Chr1g0191571 | 53.052 | 213 | 85 | 2 | 99 | 301 | 129 | 336 | 1.20e-72 | 227 |
| Msa1197630 | MtrunA17_Chr5g0426851 | 50.679 | 221 | 102 | 3 | 85 | 300 | 79 | 297 | 4.33e-68 | 214 |
| Msa1197630 | MtrunA17_Chr0c01g0489461 | 43.346 | 263 | 124 | 6 | 60 | 301 | 140 | 398 | 3.52e-58 | 191 |
| Msa1197630 | MtrunA17_Chr8g0345871 | 49.500 | 200 | 92 | 2 | 96 | 295 | 171 | 361 | 1.58e-52 | 176 |
| Msa1197630 | MtrunA17_Chr2g0287761 | 36.782 | 174 | 107 | 2 | 106 | 278 | 1 | 172 | 2.09e-35 | 126 |
| Msa1197630 | MtrunA17_Chr1g0158941 | 33.962 | 212 | 114 | 3 | 95 | 280 | 70 | 281 | 4.96e-29 | 112 |
| Msa1197630 | MtrunA17_Chr5g0411341 | 26.457 | 223 | 147 | 5 | 54 | 276 | 454 | 659 | 2.58e-13 | 70.5 |
| Msa1197630 | MtrunA17_Chr1g0211081 | 28.934 | 197 | 109 | 7 | 86 | 264 | 305 | 488 | 2.26e-12 | 67.4 |
| Msa1197630 | MtrunA17_Chr3g0126361 | 82.353 | 34 | 6 | 0 | 104 | 137 | 99 | 132 | 2.45e-12 | 63.5 |
| Msa1197630 | MtrunA17_Chr8g0366751 | 29.319 | 191 | 126 | 4 | 86 | 276 | 447 | 628 | 6.01e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197630 | AT1G72210.1 | 56.872 | 211 | 82 | 3 | 95 | 301 | 114 | 319 | 3.05e-71 | 223 |
| Msa1197630 | AT1G22490.1 | 44.186 | 301 | 144 | 7 | 8 | 298 | 17 | 303 | 2.09e-69 | 218 |
| Msa1197630 | AT5G46690.1 | 47.500 | 320 | 128 | 8 | 1 | 298 | 1 | 302 | 3.25e-64 | 205 |
| Msa1197630 | AT1G72210.2 | 56.593 | 182 | 70 | 3 | 95 | 272 | 114 | 290 | 3.89e-59 | 192 |
| Msa1197630 | AT1G22490.2 | 42.909 | 275 | 133 | 7 | 8 | 272 | 17 | 277 | 4.40e-58 | 189 |
| Msa1197630 | AT3G24140.2 | 45.540 | 213 | 103 | 2 | 73 | 272 | 162 | 374 | 1.04e-53 | 180 |
| Msa1197630 | AT3G24140.1 | 45.540 | 213 | 103 | 2 | 73 | 272 | 162 | 374 | 1.22e-53 | 181 |
| Msa1197630 | AT5G46690.2 | 43.878 | 294 | 125 | 8 | 1 | 272 | 1 | 276 | 1.70e-51 | 171 |
| Msa1197630 | AT4G01460.1 | 44.118 | 204 | 111 | 2 | 96 | 298 | 105 | 306 | 6.37e-48 | 163 |
| Msa1197630 | AT4G01460.2 | 44.118 | 204 | 111 | 2 | 96 | 298 | 105 | 306 | 6.37e-48 | 163 |
| Msa1197630 | AT5G65320.1 | 41.429 | 210 | 102 | 4 | 100 | 298 | 96 | 295 | 2.10e-43 | 150 |
| Msa1197630 | AT2G46810.2 | 43.434 | 198 | 100 | 4 | 97 | 293 | 112 | 298 | 1.44e-39 | 140 |
| Msa1197630 | AT3G61950.2 | 43.564 | 202 | 93 | 5 | 96 | 292 | 117 | 302 | 2.16e-39 | 140 |
| Msa1197630 | AT2G46810.3 | 43.434 | 198 | 100 | 4 | 97 | 293 | 172 | 358 | 3.71e-39 | 141 |
| Msa1197630 | AT5G65320.2 | 42.077 | 183 | 86 | 3 | 100 | 272 | 96 | 268 | 4.29e-39 | 139 |
| Msa1197630 | AT2G46810.1 | 43.216 | 199 | 99 | 4 | 97 | 293 | 184 | 370 | 5.82e-39 | 141 |
| Msa1197630 | AT3G61950.1 | 43.564 | 202 | 93 | 5 | 96 | 292 | 168 | 353 | 7.81e-39 | 140 |
| Msa1197630 | AT3G61950.6 | 45.238 | 168 | 72 | 4 | 96 | 259 | 117 | 268 | 1.37e-36 | 133 |
| Msa1197630 | AT3G61950.3 | 45.238 | 168 | 72 | 4 | 96 | 259 | 168 | 319 | 4.17e-36 | 133 |
| Msa1197630 | AT2G46810.4 | 44.944 | 178 | 84 | 4 | 97 | 272 | 112 | 277 | 3.08e-34 | 127 |
| Msa1197630 | AT3G06120.1 | 34.659 | 176 | 103 | 2 | 106 | 272 | 1 | 173 | 1.54e-30 | 114 |
| Msa1197630 | AT5G53210.2 | 62.338 | 77 | 28 | 1 | 97 | 173 | 94 | 169 | 2.73e-25 | 103 |
| Msa1197630 | AT5G53210.1 | 66.667 | 69 | 22 | 1 | 97 | 165 | 94 | 161 | 2.86e-25 | 103 |
| Msa1197630 | AT3G61950.4 | 67.442 | 43 | 14 | 0 | 95 | 137 | 167 | 209 | 1.74e-12 | 65.9 |
| Msa1197630 | AT3G61950.5 | 67.442 | 43 | 14 | 0 | 95 | 137 | 167 | 209 | 1.74e-12 | 65.9 |
Find 63 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAATAGTCAACAAATT+AGG | 0.131819 | 8_1:+48280524 | Msa1197630:three_prime_UTR |
| CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8_1:-48280290 | None:intergenic |
| TACAAATGAGTCTAGTTTCT+TGG | 0.228449 | 8_1:+48278247 | Msa1197630:CDS |
| CACAAATAGTCAACAAATTA+GGG | 0.233075 | 8_1:+48280525 | Msa1197630:three_prime_UTR |
| CCTAATTTGTTGACTATTTG+TGG | 0.258267 | 8_1:-48280524 | None:intergenic |
| ACAAGTATATACAACTTGTT+TGG | 0.271033 | 8_1:+48280492 | Msa1197630:three_prime_UTR |
| ACTCATTTGTAGTATGAATA+TGG | 0.284036 | 8_1:-48278235 | None:intergenic |
| TGAATATGGTTACTACTAAA+TGG | 0.300073 | 8_1:-48278221 | None:intergenic |
| TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8_1:-48279536 | None:intergenic |
| ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8_1:-48278536 | None:intergenic |
| ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8_1:-48279455 | None:intergenic |
| GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8_1:-48279462 | None:intergenic |
| TTGTGATAATACAATGGCTT+TGG | 0.360011 | 8_1:+48278133 | None:intergenic |
| AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8_1:-48279478 | None:intergenic |
| TCTTTGTTCTTACAAACTCT+TGG | 0.388402 | 8_1:-48278419 | None:intergenic |
| TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8_1:-48279454 | None:intergenic |
| AAGTAGAAAGAGACAATCTA+TGG | 0.398325 | 8_1:+48278337 | Msa1197630:CDS |
| TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8_1:-48279298 | None:intergenic |
| ACAGCAGTTCACCATTTACT+TGG | 0.428976 | 8_1:+48280279 | Msa1197630:CDS |
| CAAGTATATACAACTTGTTT+GGG | 0.431060 | 8_1:+48280493 | Msa1197630:three_prime_UTR |
| GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8_1:-48279484 | None:intergenic |
| ACTAATTTAGTTAGTTGTCC+TGG | 0.441622 | 8_1:-48279561 | None:intergenic |
| TGTCACTACCATACAACCTT+TGG | 0.451551 | 8_1:+48279626 | Msa1197630:CDS |
| AAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8_1:-48278543 | None:intergenic |
| AAATTAGGGTTGGAACCTAA+TGG | 0.463154 | 8_1:+48280539 | Msa1197630:three_prime_UTR |
| AACAAGTTGTATATACTTGT+AGG | 0.464603 | 8_1:-48280489 | None:intergenic |
| AGGACAACTAACTAAATTAG+TGG | 0.470600 | 8_1:+48279563 | Msa1197630:CDS |
| GTAGAATACCAAAGGTTGTA+TGG | 0.472728 | 8_1:-48279634 | None:intergenic |
| GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8_1:+48278535 | Msa1197630:CDS |
| ATATACAACTTGTTTGGGAA+TGG | 0.490206 | 8_1:+48280498 | Msa1197630:three_prime_UTR |
| TTGTGTATCCTCAATATACA+TGG | 0.490488 | 8_1:+48279430 | Msa1197630:CDS |
| CCATTTACTTGGAAGAATTG+AGG | 0.491479 | 8_1:+48280290 | Msa1197630:CDS |
| CTAATTTCTTGTTAATGTGA+GGG | 0.496112 | 8_1:+48280324 | Msa1197630:exon |
| ACTAATTTCTTGTTAATGTG+AGG | 0.501557 | 8_1:+48280323 | Msa1197630:exon |
| ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8_1:+48280225 | Msa1197630:intron |
| GTTTGGGACCATGTATATTG+AGG | 0.512489 | 8_1:-48279438 | None:intergenic |
| GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8_1:+48279270 | Msa1197630:CDS |
| CATTGATATGTAGGATGCTA+AGG | 0.516296 | 8_1:-48279605 | None:intergenic |
| TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8_1:+48280249 | Msa1197630:CDS |
| TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8_1:+48278534 | Msa1197630:CDS |
| CAACTAACTAAATTAGTGGC+TGG | 0.528440 | 8_1:+48279567 | Msa1197630:CDS |
| GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8_1:+48280237 | Msa1197630:CDS |
| ACGAAAATAATATTTGCAGA+TGG | 0.537432 | 8_1:+48280373 | Msa1197630:three_prime_UTR |
| AATAGTCAACAAATTAGGGT+TGG | 0.543208 | 8_1:+48280529 | Msa1197630:three_prime_UTR |
| CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8_1:-48279275 | None:intergenic |
| TGGTAGTGACATTGATATGT+AGG | 0.552077 | 8_1:-48279614 | None:intergenic |
| TTCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8_1:-48280251 | None:intergenic |
| AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8_1:+48278370 | Msa1197630:CDS |
| TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8_1:-48279493 | None:intergenic |
| CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8_1:+48279532 | Msa1197630:CDS |
| ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8_1:+48278378 | Msa1197630:CDS |
| CTATAGACTATAGTAGCTGT+TGG | 0.595201 | 8_1:+48280454 | Msa1197630:three_prime_UTR |
| ACAACATCATCATGAGGCAG+AGG | 0.602496 | 8_1:+48278298 | Msa1197630:CDS |
| CAAGTAGCATCTAAAGAGAG+TGG | 0.604413 | 8_1:+48280349 | Msa1197630:three_prime_UTR |
| TATGGCACCACCTACTATTG+AGG | 0.605310 | 8_1:-48279280 | None:intergenic |
| ATTCTACTCTATCAGTGCCA+AGG | 0.611555 | 8_1:+48279650 | Msa1197630:CDS |
| ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8_1:+48279543 | Msa1197630:CDS |
| CTGATAGAGTAGAATACCAA+AGG | 0.629072 | 8_1:-48279642 | None:intergenic |
| AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8_1:+48279377 | Msa1197630:CDS |
| AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8_1:+48279488 | Msa1197630:CDS |
| GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8_1:+48279273 | Msa1197630:CDS |
| TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8_1:+48279293 | Msa1197630:CDS |
| TGAGCAACAACATCATCATG+AGG | 0.682900 | 8_1:+48278292 | Msa1197630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTAA+TGG | + | chr8_1:48280070-48280089 | Msa1197630:intron | 0.0% |
| !! | ATATTTAGCTAAAATATATA+TGG | + | chr8_1:48280171-48280190 | Msa1197630:intron | 10.0% |
| !! | TTATTTATTTATGTATATGA+AGG | + | chr8_1:48280215-48280234 | Msa1197630:intron | 10.0% |
| !!! | CAATTTTTTGTTTTGTTATA+GGG | + | chr8_1:48279249-48279268 | Msa1197630:intron | 15.0% |
| !!! | GAATTTTCATAATTTATACA+AGG | - | chr8_1:48280145-48280164 | None:intergenic | 15.0% |
| !! | AAAGCAAAAGAAAGAAAAAA+TGG | - | chr8_1:48278836-48278855 | None:intergenic | 20.0% |
| !! | ATTTATACATATACTTCTTG+CGG | + | chr8_1:48278891-48278910 | Msa1197630:intron | 20.0% |
| !!! | TATATATGAAGCTTTTCAAA+TGG | - | chr8_1:48279173-48279192 | None:intergenic | 20.0% |
| !!! | TAATCTTTACAAGTTCTAAA+TGG | + | chr8_1:48279200-48279219 | Msa1197630:intron | 20.0% |
| !!! | GCAATTTTTTGTTTTGTTAT+AGG | + | chr8_1:48279248-48279267 | Msa1197630:intron | 20.0% |
| !! | ATTACTATCATATCAAATGA+AGG | - | chr8_1:48279693-48279712 | None:intergenic | 20.0% |
| !! | GAAAATAATTAGAGATAGAA+AGG | - | chr8_1:48279910-48279929 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTGTTTATCACT+TGG | - | chr8_1:48280018-48280037 | None:intergenic | 20.0% |
| ! | TGAATATGGTTACTACTAAA+TGG | - | chr8_1:48278224-48278243 | None:intergenic | 25.0% |
| ! | ACTCATTTGTAGTATGAATA+TGG | - | chr8_1:48278238-48278257 | None:intergenic | 25.0% |
| !!! | GTTCATTCATTTGTTTTCTA+CGG | - | chr8_1:48278490-48278509 | None:intergenic | 25.0% |
| !!! | TGTACTTCATTTTTTGTTGT+TGG | + | chr8_1:48278590-48278609 | Msa1197630:intron | 25.0% |
| !!! | GTACTTCATTTTTTGTTGTT+GGG | + | chr8_1:48278591-48278610 | Msa1197630:intron | 25.0% |
| !!! | TTCTTTCTTTTGCTTTTGTA+TGG | + | chr8_1:48278840-48278859 | Msa1197630:intron | 25.0% |
| !! | TCATATTTAGAGTTGCATTA+TGG | + | chr8_1:48278945-48278964 | Msa1197630:intron | 25.0% |
| !!! | TAATGTTTTTGATGTCTTTG+AGG | - | chr8_1:48279040-48279059 | None:intergenic | 25.0% |
| ! | ATGTTACCATAATTTCAACT+GGG | - | chr8_1:48279067-48279086 | None:intergenic | 25.0% |
| ! | AATGTTACCATAATTTCAAC+TGG | - | chr8_1:48279068-48279087 | None:intergenic | 25.0% |
| ! | TACACAAAAAATTGTGCAAA+AGG | - | chr8_1:48279417-48279436 | None:intergenic | 25.0% |
| ! | ACTAATTTCTTGTTAATGTG+AGG | + | chr8_1:48280323-48280342 | Msa1197630:exon | 25.0% |
| ! | CTAATTTCTTGTTAATGTGA+GGG | + | chr8_1:48280324-48280343 | Msa1197630:exon | 25.0% |
| ! | ACGAAAATAATATTTGCAGA+TGG | + | chr8_1:48280373-48280392 | Msa1197630:three_prime_UTR | 25.0% |
| ! | AACAAGTTGTATATACTTGT+AGG | - | chr8_1:48280492-48280511 | None:intergenic | 25.0% |
| !! | ACAAGTATATACAACTTGTT+TGG | + | chr8_1:48280492-48280511 | Msa1197630:three_prime_UTR | 25.0% |
| !! | CAAGTATATACAACTTGTTT+GGG | + | chr8_1:48280493-48280512 | Msa1197630:three_prime_UTR | 25.0% |
| ! | CACAAATAGTCAACAAATTA+GGG | + | chr8_1:48280525-48280544 | Msa1197630:three_prime_UTR | 25.0% |
| ! | TACAAATGAGTCTAGTTTCT+TGG | + | chr8_1:48278247-48278266 | Msa1197630:CDS | 30.0% |
| AAGTAGAAAGAGACAATCTA+TGG | + | chr8_1:48278337-48278356 | Msa1197630:CDS | 30.0% | |
| AACAATGAATAATCCTCAAG+TGG | + | chr8_1:48278370-48278389 | Msa1197630:CDS | 30.0% | |
| TCTTTGTTCTTACAAACTCT+TGG | - | chr8_1:48278422-48278441 | None:intergenic | 30.0% | |
| AAAACAAACCCTTTGAACAT+AGG | - | chr8_1:48278546-48278565 | None:intergenic | 30.0% | |
| ATTTCCCTTAATAGCAAGAT+TGG | + | chr8_1:48278639-48278658 | Msa1197630:intron | 30.0% | |
| TTTCCCTTAATAGCAAGATT+GGG | + | chr8_1:48278640-48278659 | Msa1197630:intron | 30.0% | |
| ACACTTTATGACTATCAATG+AGG | + | chr8_1:48278730-48278749 | Msa1197630:intron | 30.0% | |
| TTTATGACTATCAATGAGGT+GGG | + | chr8_1:48278734-48278753 | Msa1197630:intron | 30.0% | |
| ! | AAGCATATTTGTGCATGTTT+TGG | - | chr8_1:48278763-48278782 | None:intergenic | 30.0% |
| TGCTTTGTGAAAGATGTAAT+AGG | + | chr8_1:48278778-48278797 | Msa1197630:intron | 30.0% | |
| GCAAAAGAAAGAAAAAATGG+AGG | - | chr8_1:48278833-48278852 | None:intergenic | 30.0% | |
| ! | CTGTGATTTAAAACCTTGTT+TGG | - | chr8_1:48278919-48278938 | None:intergenic | 30.0% |
| TAATGTCCCAGTTGAAATTA+TGG | + | chr8_1:48279058-48279077 | Msa1197630:intron | 30.0% | |
| ACAAAAAATTGTGCAAAAGG+TGG | - | chr8_1:48279414-48279433 | None:intergenic | 30.0% | |
| TTGTGTATCCTCAATATACA+TGG | + | chr8_1:48279430-48279449 | Msa1197630:CDS | 30.0% | |
| ! | TGTGTATTTGTTAGGTGTTT+GGG | - | chr8_1:48279457-48279476 | None:intergenic | 30.0% |
| ! | ATGTGTATTTGTTAGGTGTT+TGG | - | chr8_1:48279458-48279477 | None:intergenic | 30.0% |
| ACTAATTTAGTTAGTTGTCC+TGG | - | chr8_1:48279564-48279583 | None:intergenic | 30.0% | |
| AGGACAACTAACTAAATTAG+TGG | + | chr8_1:48279563-48279582 | Msa1197630:CDS | 30.0% | |
| ATCAATATAGTTGCATACCT+TGG | - | chr8_1:48279670-48279689 | None:intergenic | 30.0% | |
| ATGTATATGAAGGTTGAAGA+AGG | + | chr8_1:48280225-48280244 | Msa1197630:intron | 30.0% | |
| ! | ATATACAACTTGTTTGGGAA+TGG | + | chr8_1:48280498-48280517 | Msa1197630:three_prime_UTR | 30.0% |
| !! | CCTAATTTGTTGACTATTTG+TGG | - | chr8_1:48280527-48280546 | None:intergenic | 30.0% |
| CCACAAATAGTCAACAAATT+AGG | + | chr8_1:48280524-48280543 | Msa1197630:three_prime_UTR | 30.0% | |
| AATAGTCAACAAATTAGGGT+TGG | + | chr8_1:48280529-48280548 | Msa1197630:three_prime_UTR | 30.0% | |
| !!! | TGTCAGCATTTTTTACCATT+AGG | - | chr8_1:48280557-48280576 | None:intergenic | 30.0% |
| !! | TCTCCCAATCTTGCTATTAA+GGG | - | chr8_1:48278646-48278665 | None:intergenic | 35.0% |
| !! | ATCTCCCAATCTTGCTATTA+AGG | - | chr8_1:48278647-48278666 | None:intergenic | 35.0% |
| CTTTATGACTATCAATGAGG+TGG | + | chr8_1:48278733-48278752 | Msa1197630:intron | 35.0% | |
| AGCACAAAACAATGAAGACA+TGG | + | chr8_1:48279377-48279396 | Msa1197630:CDS | 35.0% | |
| GTCTTGGATGTGTATTTGTT+AGG | - | chr8_1:48279465-48279484 | None:intergenic | 35.0% | |
| CAAACCTTAGAATTCTCACT+AGG | + | chr8_1:48279532-48279551 | Msa1197630:CDS | 35.0% | |
| TTGTCCTAGTGAGAATTCTA+AGG | - | chr8_1:48279539-48279558 | None:intergenic | 35.0% | |
| CAACTAACTAAATTAGTGGC+TGG | + | chr8_1:48279567-48279586 | Msa1197630:CDS | 35.0% | |
| CATTGATATGTAGGATGCTA+AGG | - | chr8_1:48279608-48279627 | None:intergenic | 35.0% | |
| ! | TGGTAGTGACATTGATATGT+AGG | - | chr8_1:48279617-48279636 | None:intergenic | 35.0% |
| GTAGAATACCAAAGGTTGTA+TGG | - | chr8_1:48279637-48279656 | None:intergenic | 35.0% | |
| CTGATAGAGTAGAATACCAA+AGG | - | chr8_1:48279645-48279664 | None:intergenic | 35.0% | |
| CCTCAATTCTTCCAAGTAAA+TGG | - | chr8_1:48280293-48280312 | None:intergenic | 35.0% | |
| CCATTTACTTGGAAGAATTG+AGG | + | chr8_1:48280290-48280309 | Msa1197630:CDS | 35.0% | |
| !! | TTGCAGATGGTTTGAGTTTT+TGG | + | chr8_1:48280386-48280405 | Msa1197630:three_prime_UTR | 35.0% |
| CTATAGACTATAGTAGCTGT+TGG | + | chr8_1:48280454-48280473 | Msa1197630:three_prime_UTR | 35.0% | |
| AAATTAGGGTTGGAACCTAA+TGG | + | chr8_1:48280539-48280558 | Msa1197630:three_prime_UTR | 35.0% | |
| TGAGCAACAACATCATCATG+AGG | + | chr8_1:48278292-48278311 | Msa1197630:CDS | 40.0% | |
| ATAATCCTCAAGTGGTGCAA+AGG | + | chr8_1:48278378-48278397 | Msa1197630:CDS | 40.0% | |
| ! | TTTTTCCTTTGCACCACTTG+AGG | - | chr8_1:48278386-48278405 | None:intergenic | 40.0% |
| AAGTGGTGCAAAGGAAAAAG+AGG | + | chr8_1:48278387-48278406 | Msa1197630:CDS | 40.0% | |
| TGCCTGAATCCTATGTTCAA+AGG | + | chr8_1:48278534-48278553 | Msa1197630:CDS | 40.0% | |
| GCCTGAATCCTATGTTCAAA+GGG | + | chr8_1:48278535-48278554 | Msa1197630:CDS | 40.0% | |
| ACCCTTTGAACATAGGATTC+AGG | - | chr8_1:48278539-48278558 | None:intergenic | 40.0% | |
| ATTGAGTCTATGGTTAAGCG+CGG | - | chr8_1:48279017-48279036 | None:intergenic | 40.0% | |
| ! | GTCTTTGAGGATTGAGTCTA+TGG | - | chr8_1:48279027-48279046 | None:intergenic | 40.0% |
| TAGCTCCTTCACAAACTCTA+TGG | - | chr8_1:48279301-48279320 | None:intergenic | 40.0% | |
| ! | GTTTGGGACCATGTATATTG+AGG | - | chr8_1:48279441-48279460 | None:intergenic | 40.0% |
| TGTAACCTCGATATCAGCTA+TGG | - | chr8_1:48279496-48279515 | None:intergenic | 40.0% | |
| TGTCACTACCATACAACCTT+TGG | + | chr8_1:48279626-48279645 | Msa1197630:CDS | 40.0% | |
| ATTCTACTCTATCAGTGCCA+AGG | + | chr8_1:48279650-48279669 | Msa1197630:CDS | 40.0% | |
| GTTGAAGAAGGATTCCAACT+TGG | + | chr8_1:48280237-48280256 | Msa1197630:CDS | 40.0% | |
| TTCCAACTTGGTTCAGTAGA+CGG | + | chr8_1:48280249-48280268 | Msa1197630:CDS | 40.0% | |
| ACAGCAGTTCACCATTTACT+TGG | + | chr8_1:48280279-48280298 | Msa1197630:CDS | 40.0% | |
| CAAGTAGCATCTAAAGAGAG+TGG | + | chr8_1:48280349-48280368 | Msa1197630:three_prime_UTR | 40.0% | |
| ACAACATCATCATGAGGCAG+AGG | + | chr8_1:48278298-48278317 | Msa1197630:CDS | 45.0% | |
| ACTTCTTGCGGTACCAAACA+AGG | + | chr8_1:48278903-48278922 | Msa1197630:intron | 45.0% | |
| TATGGCACCACCTACTATTG+AGG | - | chr8_1:48279283-48279302 | None:intergenic | 45.0% | |
| !! | TGGTGCCATAGAGTTTGTGA+AGG | + | chr8_1:48279293-48279312 | Msa1197630:CDS | 45.0% |
| GATATCAGCTATGGCAGCTT+TGG | - | chr8_1:48279487-48279506 | None:intergenic | 45.0% | |
| ATTCTCACTAGGACAAGACC+AGG | + | chr8_1:48279543-48279562 | Msa1197630:CDS | 45.0% | |
| TTCCGTCTACTGAACCAAGT+TGG | - | chr8_1:48280254-48280273 | None:intergenic | 45.0% | |
| GGTGACCAAGCCTCAATAGT+AGG | + | chr8_1:48279270-48279289 | Msa1197630:CDS | 50.0% | |
| GACCAAGCCTCAATAGTAGG+TGG | + | chr8_1:48279273-48279292 | Msa1197630:CDS | 50.0% | |
| CACCACCTACTATTGAGGCT+TGG | - | chr8_1:48279278-48279297 | None:intergenic | 50.0% | |
| ! | AGCTATGGCAGCTTTGGTCT+TGG | - | chr8_1:48279481-48279500 | None:intergenic | 50.0% |
| AGCTGCCATAGCTGATATCG+AGG | + | chr8_1:48279488-48279507 | Msa1197630:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 48278146 | 48280613 | 48278146 | ID=Msa1197630;Name=Msa1197630 |
| chr8_1 | mRNA | 48278146 | 48280613 | 48278146 | ID=Msa1197630-mRNA-1;Parent=Msa1197630;Name=Msa1197630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|275|304 |
| chr8_1 | exon | 48278146 | 48278556 | 48278146 | ID=Msa1197630-mRNA-1:exon:15225;Parent=Msa1197630-mRNA-1 |
| chr8_1 | exon | 48279270 | 48279671 | 48279270 | ID=Msa1197630-mRNA-1:exon:15226;Parent=Msa1197630-mRNA-1 |
| chr8_1 | exon | 48280237 | 48280613 | 48280237 | ID=Msa1197630-mRNA-1:exon:15227;Parent=Msa1197630-mRNA-1 |
| chr8_1 | CDS | 48278146 | 48278556 | 48278146 | ID=Msa1197630-mRNA-1:cds;Parent=Msa1197630-mRNA-1 |
| chr8_1 | CDS | 48279270 | 48279671 | 48279270 | ID=Msa1197630-mRNA-1:cds;Parent=Msa1197630-mRNA-1 |
| chr8_1 | CDS | 48280237 | 48280338 | 48280237 | ID=Msa1197630-mRNA-1:cds;Parent=Msa1197630-mRNA-1 |
| chr8_1 | three_prime_UTR | 48280339 | 48280613 | 48280339 | ID=Msa1197630-mRNA-1:three_prime_utr;Parent=Msa1197630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
