AlfalfaGEDB | Msa1197630

M. sativa cultivar zhongmu-4 / Msa1197630

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197630	sp\|Q9C7T4\|BH096_ARATH	56.872	211	82	3	95	301	114	319	3.00e-70	223

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197630	A0A396GLS4	93.610	313	10	3	1	304	11	322	0.0	591

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TFs/TRs:

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Gene ID	Type	Classification
Msa1197630	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1197630	Msa1291960	0.897247	1.691167e-76	-8.615850e-47
Msa1197630	Msa1334780	0.996928	2.841845e-234	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197630	MtrunA17_Chr8g0366551	93.610	313	10	3	1	304	11	322	0.0	591
Msa1197630	MtrunA17_Chr3g0132471	49.442	269	111	6	46	298	56	315	7.81e-82	250
Msa1197630	MtrunA17_Chr7g0273081	44.521	292	135	7	27	301	31	312	7.15e-73	227
Msa1197630	MtrunA17_Chr1g0191571	53.052	213	85	2	99	301	129	336	1.20e-72	227
Msa1197630	MtrunA17_Chr5g0426851	50.679	221	102	3	85	300	79	297	4.33e-68	214
Msa1197630	MtrunA17_Chr0c01g0489461	43.346	263	124	6	60	301	140	398	3.52e-58	191
Msa1197630	MtrunA17_Chr8g0345871	49.500	200	92	2	96	295	171	361	1.58e-52	176
Msa1197630	MtrunA17_Chr2g0287761	36.782	174	107	2	106	278	1	172	2.09e-35	126
Msa1197630	MtrunA17_Chr1g0158941	33.962	212	114	3	95	280	70	281	4.96e-29	112
Msa1197630	MtrunA17_Chr5g0411341	26.457	223	147	5	54	276	454	659	2.58e-13	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1197630	AT1G72210.1	56.872	211	82	3	95	301	114	319	3.05e-71	223
Msa1197630	AT1G22490.1	44.186	301	144	7	8	298	17	303	2.09e-69	218
Msa1197630	AT5G46690.1	47.500	320	128	8	1	298	1	302	3.25e-64	205
Msa1197630	AT1G72210.2	56.593	182	70	3	95	272	114	290	3.89e-59	192
Msa1197630	AT1G22490.2	42.909	275	133	7	8	272	17	277	4.40e-58	189
Msa1197630	AT3G24140.2	45.540	213	103	2	73	272	162	374	1.04e-53	180
Msa1197630	AT3G24140.1	45.540	213	103	2	73	272	162	374	1.22e-53	181
Msa1197630	AT5G46690.2	43.878	294	125	8	1	272	1	276	1.70e-51	171
Msa1197630	AT4G01460.1	44.118	204	111	2	96	298	105	306	6.37e-48	163
Msa1197630	AT4G01460.2	44.118	204	111	2	96	298	105	306	6.37e-48	163

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Find 63 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACCCTTTGAACAT+AGG	0.458862	8_1:-48278543	None:intergenic
AAATTAGGGTTGGAACCTAA+TGG	0.463154	8_1:+48280539	Msa1197630:three_prime_UTR
AACAAGTTGTATATACTTGT+AGG	0.464603	8_1:-48280489	None:intergenic
AACAATGAATAATCCTCAAG+TGG	0.569610	8_1:+48278370	Msa1197630:CDS
AAGTAGAAAGAGACAATCTA+TGG	0.398325	8_1:+48278337	Msa1197630:CDS
AATAGTCAACAAATTAGGGT+TGG	0.543208	8_1:+48280529	Msa1197630:three_prime_UTR
ACAACATCATCATGAGGCAG+AGG	0.602496	8_1:+48278298	Msa1197630:CDS
ACAAGTATATACAACTTGTT+TGG	0.271033	8_1:+48280492	Msa1197630:three_prime_UTR
ACAGCAGTTCACCATTTACT+TGG	0.428976	8_1:+48280279	Msa1197630:CDS
ACCCTTTGAACATAGGATTC+AGG	0.351099	8_1:-48278536	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAGAAAGAGACAATCTA+TGG	+	chr8_1:48278337-48278356	Msa1197630:CDS	30.0%
AACAATGAATAATCCTCAAG+TGG	+	chr8_1:48278370-48278389	Msa1197630:CDS	30.0%
TCTTTGTTCTTACAAACTCT+TGG	-	chr8_1:48278422-48278441	None:intergenic	30.0%
AAAACAAACCCTTTGAACAT+AGG	-	chr8_1:48278546-48278565	None:intergenic	30.0%
ATTTCCCTTAATAGCAAGAT+TGG	+	chr8_1:48278639-48278658	Msa1197630:intron	30.0%
TTTCCCTTAATAGCAAGATT+GGG	+	chr8_1:48278640-48278659	Msa1197630:intron	30.0%
ACACTTTATGACTATCAATG+AGG	+	chr8_1:48278730-48278749	Msa1197630:intron	30.0%
TTTATGACTATCAATGAGGT+GGG	+	chr8_1:48278734-48278753	Msa1197630:intron	30.0%
TGCTTTGTGAAAGATGTAAT+AGG	+	chr8_1:48278778-48278797	Msa1197630:intron	30.0%
GCAAAAGAAAGAAAAAATGG+AGG	-	chr8_1:48278833-48278852	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	48278146	48280613	48278146	ID=Msa1197630;Name=Msa1197630
chr8_1	mRNA	48278146	48280613	48278146	ID=Msa1197630-mRNA-1;Parent=Msa1197630;Name=Msa1197630-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|275\|304
chr8_1	exon	48278146	48278556	48278146	ID=Msa1197630-mRNA-1:exon:15225;Parent=Msa1197630-mRNA-1
chr8_1	exon	48279270	48279671	48279270	ID=Msa1197630-mRNA-1:exon:15226;Parent=Msa1197630-mRNA-1
chr8_1	exon	48280237	48280613	48280237	ID=Msa1197630-mRNA-1:exon:15227;Parent=Msa1197630-mRNA-1
chr8_1	CDS	48278146	48278556	48278146	ID=Msa1197630-mRNA-1:cds;Parent=Msa1197630-mRNA-1
chr8_1	CDS	48279270	48279671	48279270	ID=Msa1197630-mRNA-1:cds;Parent=Msa1197630-mRNA-1
chr8_1	CDS	48280237	48280338	48280237	ID=Msa1197630-mRNA-1:cds;Parent=Msa1197630-mRNA-1
chr8_1	three_prime_UTR	48280339	48280613	48280339	ID=Msa1197630-mRNA-1:three_prime_utr;Parent=Msa1197630-mRNA-1

Gene Sequence

>Msa1197630

ATGGCTTTGGAAACTCTTTCATCATCATGCAATGAGTTTTCAAACTTCATTATCTATGACACAATTTCTGCAACTCCATTTAGTAGTAACCATATTCATACTACAAATGAGTCTAGTTTCTTGGAAAATACAATGAACTATGATCATGAGCAACAACATCATCATGAGGCAGAGGCTGCAATATTTGATCAAAGTAGAAAGAGACAATCTATGGAACAAGAAGAAACAATGAATAATCCTCAAGTGGTGCAAAGGAAAAAGAGGAGAAGAAAACCAAGAGTTTGTAAGAACAAAGAAGAAGCTGAGACACAAAGAATCACACATATTACTGTTGAAAGAAACCGTAGAAAACAAATGAATGAACATCTTGCTGTACTTCGTTCACTCATGCCTGAATCCTATGTTCAAAGGGGTGACCAAGCCTCAATAGTAGGTGGTGCCATAGAGTTTGTGAAGGAGCTAGAGCATCTCTTACAATCACTTGAAGCTAGAAAGTTACAACTTGTACAACAAGAAGTAGCACAAAACAATGAAGACATGGCAATTTCAAAACCACCTTTTGCACAATTTTTTGTGTATCCTCAATATACATGGTCCCAAACACCTAACAAATACACATCCAAGACCAAAGCTGCCATAGCTGATATCGAGGTTACATTGATCGAGACTCATGCAAACCTTAGAATTCTCACTAGGACAAGACCAGGACAACTAACTAAATTAGTGGCTGGTTTTCAAACACTCTTCCTTAGCATCCTACATATCAATGTCACTACCATACAACCTTTGGTATTCTACTCTATCAGTGCCAAGGTTGAAGAAGGATTCCAACTTGGTTCAGTAGACGGAATTGCAACAGCAGTTCACCATTTACTTGGAAGAATTGAGGAAGAAGCTTCACTAATTTCTTGTTAA

Protein sequence

>Msa1197630

MALETLSSSCNEFSNFIIYDTISATPFSSNHIHTTNESSFLENTMNYDHEQQHHHEAEAAIFDQSRKRQSMEQEETMNNPQVVQRKKRRRKPRVCKNKEEAETQRITHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQSLEARKLQLVQQEVAQNNEDMAISKPPFAQFFVYPQYTWSQTPNKYTSKTKAAIADIEVTLIETHANLRILTRTRPGQLTKLVAGFQTLFLSILHINVTTIQPLVFYSISAKVEEGFQLGSVDGIATAVHHLLGRIEEEASLISC*