Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291960 | sp|Q9C7T4|BH096_ARATH | 56.398 | 211 | 83 | 3 | 95 | 301 | 114 | 319 | 1.28e-69 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291960 | A0A396GLS4 | 93.291 | 313 | 11 | 3 | 1 | 304 | 11 | 322 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1291960 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0837440 | Msa1291960 | 0.811785 | 5.885831e-51 | -8.615850e-47 |
| Msa1291960 | Msa1334780 | 0.891031 | 5.757404e-74 | -8.615850e-47 |
| Msa1197630 | Msa1291960 | 0.897247 | 1.691167e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291960 | MtrunA17_Chr8g0366551 | 93.291 | 313 | 11 | 3 | 1 | 304 | 11 | 322 | 0.0 | 556 |
| Msa1291960 | MtrunA17_Chr3g0132471 | 49.071 | 269 | 112 | 6 | 46 | 298 | 56 | 315 | 2.97e-81 | 248 |
| Msa1291960 | MtrunA17_Chr7g0273081 | 44.178 | 292 | 136 | 7 | 27 | 301 | 31 | 312 | 3.62e-72 | 225 |
| Msa1291960 | MtrunA17_Chr1g0191571 | 52.582 | 213 | 86 | 2 | 99 | 301 | 129 | 336 | 5.20e-72 | 225 |
| Msa1291960 | MtrunA17_Chr5g0426851 | 50.226 | 221 | 103 | 3 | 85 | 300 | 79 | 297 | 1.86e-67 | 213 |
| Msa1291960 | MtrunA17_Chr0c01g0489461 | 43.346 | 263 | 124 | 6 | 60 | 301 | 140 | 398 | 4.22e-58 | 191 |
| Msa1291960 | MtrunA17_Chr8g0345871 | 49.500 | 200 | 92 | 2 | 96 | 295 | 171 | 361 | 1.68e-52 | 176 |
| Msa1291960 | MtrunA17_Chr2g0287761 | 36.782 | 174 | 107 | 2 | 106 | 278 | 1 | 172 | 1.75e-35 | 127 |
| Msa1291960 | MtrunA17_Chr1g0158941 | 33.962 | 212 | 114 | 3 | 95 | 280 | 70 | 281 | 3.75e-29 | 112 |
| Msa1291960 | MtrunA17_Chr5g0411341 | 26.009 | 223 | 148 | 5 | 54 | 276 | 454 | 659 | 2.72e-13 | 70.1 |
| Msa1291960 | MtrunA17_Chr1g0211081 | 28.934 | 197 | 109 | 7 | 86 | 264 | 305 | 488 | 1.90e-12 | 67.4 |
| Msa1291960 | MtrunA17_Chr3g0126361 | 82.353 | 34 | 6 | 0 | 104 | 137 | 99 | 132 | 2.45e-12 | 63.5 |
| Msa1291960 | MtrunA17_Chr8g0366751 | 29.319 | 191 | 126 | 4 | 86 | 276 | 447 | 628 | 7.08e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291960 | AT1G72210.1 | 56.398 | 211 | 83 | 3 | 95 | 301 | 114 | 319 | 1.30e-70 | 221 |
| Msa1291960 | AT1G22490.1 | 43.854 | 301 | 145 | 7 | 8 | 298 | 17 | 303 | 9.92e-69 | 216 |
| Msa1291960 | AT5G46690.1 | 47.500 | 320 | 128 | 8 | 1 | 298 | 1 | 302 | 3.39e-64 | 205 |
| Msa1291960 | AT1G72210.2 | 56.044 | 182 | 71 | 3 | 95 | 272 | 114 | 290 | 1.87e-58 | 190 |
| Msa1291960 | AT1G22490.2 | 42.545 | 275 | 134 | 7 | 8 | 272 | 17 | 277 | 2.09e-57 | 188 |
| Msa1291960 | AT3G24140.2 | 45.540 | 213 | 103 | 2 | 73 | 272 | 162 | 374 | 1.62e-53 | 180 |
| Msa1291960 | AT3G24140.1 | 45.540 | 213 | 103 | 2 | 73 | 272 | 162 | 374 | 1.86e-53 | 180 |
| Msa1291960 | AT5G46690.2 | 43.878 | 294 | 125 | 8 | 1 | 272 | 1 | 276 | 1.74e-51 | 171 |
| Msa1291960 | AT4G01460.1 | 44.118 | 204 | 111 | 2 | 96 | 298 | 105 | 306 | 5.55e-48 | 163 |
| Msa1291960 | AT4G01460.2 | 44.118 | 204 | 111 | 2 | 96 | 298 | 105 | 306 | 5.55e-48 | 163 |
| Msa1291960 | AT5G65320.1 | 40.952 | 210 | 103 | 4 | 100 | 298 | 96 | 295 | 1.06e-42 | 149 |
| Msa1291960 | AT2G46810.2 | 43.434 | 198 | 100 | 4 | 97 | 293 | 112 | 298 | 1.20e-39 | 141 |
| Msa1291960 | AT3G61950.2 | 43.564 | 202 | 93 | 5 | 96 | 292 | 117 | 302 | 2.38e-39 | 140 |
| Msa1291960 | AT2G46810.3 | 43.434 | 198 | 100 | 4 | 97 | 293 | 172 | 358 | 3.24e-39 | 141 |
| Msa1291960 | AT2G46810.1 | 43.434 | 198 | 100 | 4 | 97 | 293 | 184 | 370 | 5.70e-39 | 141 |
| Msa1291960 | AT3G61950.1 | 43.564 | 202 | 93 | 5 | 96 | 292 | 168 | 353 | 8.23e-39 | 140 |
| Msa1291960 | AT5G65320.2 | 41.530 | 183 | 87 | 3 | 100 | 272 | 96 | 268 | 1.97e-38 | 137 |
| Msa1291960 | AT3G61950.6 | 45.238 | 168 | 72 | 4 | 96 | 259 | 117 | 268 | 1.32e-36 | 133 |
| Msa1291960 | AT3G61950.3 | 45.238 | 168 | 72 | 4 | 96 | 259 | 168 | 319 | 4.04e-36 | 133 |
| Msa1291960 | AT2G46810.4 | 44.944 | 178 | 84 | 4 | 97 | 272 | 112 | 277 | 2.87e-34 | 127 |
| Msa1291960 | AT3G06120.1 | 34.659 | 176 | 103 | 2 | 106 | 272 | 1 | 173 | 1.78e-30 | 114 |
| Msa1291960 | AT5G53210.2 | 62.338 | 77 | 28 | 1 | 97 | 173 | 94 | 169 | 2.60e-25 | 103 |
| Msa1291960 | AT5G53210.1 | 66.667 | 69 | 22 | 1 | 97 | 165 | 94 | 161 | 2.97e-25 | 103 |
| Msa1291960 | AT3G61950.4 | 67.442 | 43 | 14 | 0 | 95 | 137 | 167 | 209 | 1.62e-12 | 66.2 |
| Msa1291960 | AT3G61950.5 | 67.442 | 43 | 14 | 0 | 95 | 137 | 167 | 209 | 1.62e-12 | 66.2 |
Find 65 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAATAGTCAACAAATT+AGG | 0.131819 | 8_3:+47575796 | Msa1291960:three_prime_UTR |
| CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8_3:-47575557 | None:intergenic |
| GTTTGGGACCATGTATATTT+AGG | 0.224632 | 8_3:-47574709 | None:intergenic |
| TACAAATGAGTCTAGTTTCT+TGG | 0.228449 | 8_3:+47573511 | Msa1291960:CDS |
| CACAAATAGTCAACAAATTA+GGG | 0.233075 | 8_3:+47575797 | Msa1291960:three_prime_UTR |
| CCTAATTTGTTGACTATTTG+TGG | 0.258267 | 8_3:-47575796 | None:intergenic |
| ACAAGTATATACAACTTGTT+TGG | 0.271033 | 8_3:+47575764 | Msa1291960:three_prime_UTR |
| ACTCATTTGTAGTATGAATA+TGG | 0.284036 | 8_3:-47573499 | None:intergenic |
| TGAATATGGTTACTACTAAA+TGG | 0.300073 | 8_3:-47573485 | None:intergenic |
| TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8_3:-47574807 | None:intergenic |
| ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8_3:-47573800 | None:intergenic |
| ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8_3:-47574726 | None:intergenic |
| TCTTTGTTCTTGCAAACTCT+TGG | 0.352008 | 8_3:-47573683 | None:intergenic |
| GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8_3:-47574733 | None:intergenic |
| TTGTGATAATACAATGGCTT+TGG | 0.360011 | 8_3:+47573397 | None:intergenic |
| AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8_3:-47574749 | None:intergenic |
| ACAGCAGTGCACCATTTACT+TGG | 0.383023 | 8_3:+47575546 | Msa1291960:CDS |
| TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8_3:-47574725 | None:intergenic |
| AAGTAGAAAGAGACAATCTA+TGG | 0.398325 | 8_3:+47573601 | Msa1291960:CDS |
| TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8_3:-47574569 | None:intergenic |
| CAAGTATATACAACTTGTTT+GGG | 0.431060 | 8_3:+47575765 | Msa1291960:three_prime_UTR |
| GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8_3:-47574755 | None:intergenic |
| ACTAATTTAGTTAGTTGTCC+TGG | 0.441622 | 8_3:-47574832 | None:intergenic |
| TGTCACTACCATACAACCTT+TGG | 0.451551 | 8_3:+47574897 | Msa1291960:CDS |
| TTCTTCCTTTGCACCACTTG+AGG | 0.453078 | 8_3:-47573647 | None:intergenic |
| AAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8_3:-47573807 | None:intergenic |
| AAATTAGGGTTGGAACCTAA+TGG | 0.463154 | 8_3:+47575811 | Msa1291960:three_prime_UTR |
| AACAAGTTGTATATACTTGT+AGG | 0.464603 | 8_3:-47575761 | None:intergenic |
| AGGACAACTAACTAAATTAG+TGG | 0.470600 | 8_3:+47574834 | Msa1291960:CDS |
| GTAGAATACCAAAGGTTGTA+TGG | 0.472728 | 8_3:-47574905 | None:intergenic |
| GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8_3:+47573799 | Msa1291960:CDS |
| AAGTGGTGCAAAGGAAGAAA+AGG | 0.487447 | 8_3:+47573651 | Msa1291960:CDS |
| ATATACAACTTGTTTGGGAA+TGG | 0.490206 | 8_3:+47575770 | Msa1291960:three_prime_UTR |
| CTAATTTCTTGTTAATGTGA+GGG | 0.496112 | 8_3:+47575591 | Msa1291960:exon |
| CCATTTACTTGGAAGAATTG+AGG | 0.501411 | 8_3:+47575557 | Msa1291960:CDS |
| ACTAATTTCTTGTTAATGTG+AGG | 0.501557 | 8_3:+47575590 | Msa1291960:exon |
| ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8_3:+47575492 | Msa1291960:intron |
| TTGTGTATCCTAAATATACA+TGG | 0.510326 | 8_3:+47574701 | Msa1291960:CDS |
| GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8_3:+47574541 | Msa1291960:CDS |
| CATTGATATGTAGGATGCTA+AGG | 0.516296 | 8_3:-47574876 | None:intergenic |
| TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8_3:+47575516 | Msa1291960:CDS |
| TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8_3:+47573798 | Msa1291960:CDS |
| CAACTAACTAAATTAGTGGC+TGG | 0.528440 | 8_3:+47574838 | Msa1291960:CDS |
| GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8_3:+47575504 | Msa1291960:CDS |
| ACGAAAATAATATTTGCAGA+TGG | 0.537432 | 8_3:+47575640 | Msa1291960:three_prime_UTR |
| AATAGTCAACAAATTAGGGT+TGG | 0.543208 | 8_3:+47575801 | Msa1291960:three_prime_UTR |
| CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8_3:-47574546 | None:intergenic |
| TGGTAGTGACATTGATATGT+AGG | 0.552077 | 8_3:-47574885 | None:intergenic |
| TTCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8_3:-47575518 | None:intergenic |
| AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8_3:+47573634 | Msa1291960:CDS |
| TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8_3:-47574764 | None:intergenic |
| CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8_3:+47574803 | Msa1291960:CDS |
| ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8_3:+47573642 | Msa1291960:CDS |
| CTATAGACTATAGTAGCTGT+TGG | 0.595201 | 8_3:+47575726 | Msa1291960:three_prime_UTR |
| ACAACATCATCATGAGGCAG+AGG | 0.602496 | 8_3:+47573562 | Msa1291960:CDS |
| CAAGTAGCATCTAAAGAGAG+TGG | 0.604413 | 8_3:+47575616 | Msa1291960:three_prime_UTR |
| TATGGCACCACCTACTATTG+AGG | 0.605310 | 8_3:-47574551 | None:intergenic |
| ATTCTACTCTATCAGTGCCA+AGG | 0.611555 | 8_3:+47574921 | Msa1291960:CDS |
| ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8_3:+47574814 | Msa1291960:CDS |
| CTGATAGAGTAGAATACCAA+AGG | 0.629072 | 8_3:-47574913 | None:intergenic |
| AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8_3:+47574648 | Msa1291960:CDS |
| AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8_3:+47574759 | Msa1291960:CDS |
| GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8_3:+47574544 | Msa1291960:CDS |
| TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8_3:+47574564 | Msa1291960:CDS |
| TGAGCAACAACATCATCATG+AGG | 0.682900 | 8_3:+47573556 | Msa1291960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTAA+TGG | + | chr8_3:47575337-47575356 | Msa1291960:intron | 0.0% |
| !!! | AATTTTTTTGTTTTGTTATA+GGG | + | chr8_3:47574520-47574539 | Msa1291960:intron | 10.0% |
| !! | ATATTTAGCTAAAATATATA+TGG | + | chr8_3:47575438-47575457 | Msa1291960:intron | 10.0% |
| !! | TTATTTATTTATGTATATGA+AGG | + | chr8_3:47575482-47575501 | Msa1291960:intron | 10.0% |
| !!! | CAATTTTTTTGTTTTGTTAT+AGG | + | chr8_3:47574519-47574538 | Msa1291960:intron | 15.0% |
| !!! | GAATTTTCATAATTTATACA+AGG | - | chr8_3:47575412-47575431 | None:intergenic | 15.0% |
| !!! | TACTTCATTTTTTTGTTGTT+GGG | + | chr8_3:47573855-47573874 | Msa1291960:intron | 20.0% |
| !! | AAAGCAAAAGAAAGAAAAAA+TGG | - | chr8_3:47574101-47574120 | None:intergenic | 20.0% |
| !!! | TATTCTTTACATGTTCTAAA+TGG | + | chr8_3:47574467-47574486 | Msa1291960:intron | 20.0% |
| !! | ATTACTATCATATCAAATGA+AGG | - | chr8_3:47574964-47574983 | None:intergenic | 20.0% |
| !! | GAAAATAATTAGAGATAGAA+AGG | - | chr8_3:47575179-47575198 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTGTTTATCACT+TGG | - | chr8_3:47575287-47575306 | None:intergenic | 20.0% |
| ! | TGAATATGGTTACTACTAAA+TGG | - | chr8_3:47573488-47573507 | None:intergenic | 25.0% |
| ! | ACTCATTTGTAGTATGAATA+TGG | - | chr8_3:47573502-47573521 | None:intergenic | 25.0% |
| !!! | GTTCATTCATTTGTTTTCTA+CGG | - | chr8_3:47573754-47573773 | None:intergenic | 25.0% |
| !!! | GTACTTCATTTTTTTGTTGT+TGG | + | chr8_3:47573854-47573873 | Msa1291960:intron | 25.0% |
| !!! | TTCTTTCTTTTGCTTTTGTA+TGG | + | chr8_3:47574105-47574124 | Msa1291960:intron | 25.0% |
| !!! | TAATGTTTTTGATGTCTTTG+AGG | - | chr8_3:47574303-47574322 | None:intergenic | 25.0% |
| ! | ATGTTACCATAATTTCAACT+GGG | - | chr8_3:47574330-47574349 | None:intergenic | 25.0% |
| ! | AATGTTACCATAATTTCAAC+TGG | - | chr8_3:47574331-47574350 | None:intergenic | 25.0% |
| !! | TATACATGAAGCTTTTCAAA+TGG | - | chr8_3:47574440-47574459 | None:intergenic | 25.0% |
| ! | TACACAAAAAATTGTGCAAA+AGG | - | chr8_3:47574688-47574707 | None:intergenic | 25.0% |
| ! | TTGTGTATCCTAAATATACA+TGG | + | chr8_3:47574701-47574720 | Msa1291960:CDS | 25.0% |
| ! | ACTAATTTCTTGTTAATGTG+AGG | + | chr8_3:47575590-47575609 | Msa1291960:exon | 25.0% |
| ! | CTAATTTCTTGTTAATGTGA+GGG | + | chr8_3:47575591-47575610 | Msa1291960:exon | 25.0% |
| ! | ACGAAAATAATATTTGCAGA+TGG | + | chr8_3:47575640-47575659 | Msa1291960:three_prime_UTR | 25.0% |
| ! | AACAAGTTGTATATACTTGT+AGG | - | chr8_3:47575764-47575783 | None:intergenic | 25.0% |
| !! | ACAAGTATATACAACTTGTT+TGG | + | chr8_3:47575764-47575783 | Msa1291960:three_prime_UTR | 25.0% |
| !! | CAAGTATATACAACTTGTTT+GGG | + | chr8_3:47575765-47575784 | Msa1291960:three_prime_UTR | 25.0% |
| ! | CACAAATAGTCAACAAATTA+GGG | + | chr8_3:47575797-47575816 | Msa1291960:three_prime_UTR | 25.0% |
| ! | TACAAATGAGTCTAGTTTCT+TGG | + | chr8_3:47573511-47573530 | Msa1291960:CDS | 30.0% |
| AAGTAGAAAGAGACAATCTA+TGG | + | chr8_3:47573601-47573620 | Msa1291960:CDS | 30.0% | |
| AACAATGAATAATCCTCAAG+TGG | + | chr8_3:47573634-47573653 | Msa1291960:CDS | 30.0% | |
| AAAACAAACCCTTTGAACAT+AGG | - | chr8_3:47573810-47573829 | None:intergenic | 30.0% | |
| ATTTCCCTTAATAGCAAAGA+TGG | + | chr8_3:47573903-47573922 | Msa1291960:intron | 30.0% | |
| TTTCCCTTAATAGCAAAGAT+GGG | + | chr8_3:47573904-47573923 | Msa1291960:intron | 30.0% | |
| ACACTTTATGACTATCAATG+AGG | + | chr8_3:47573995-47574014 | Msa1291960:intron | 30.0% | |
| TTTATGACTATCAATGAGGT+GGG | + | chr8_3:47573999-47574018 | Msa1291960:intron | 30.0% | |
| ! | AAGCATATTTGTGCATGTTT+TGG | - | chr8_3:47574028-47574047 | None:intergenic | 30.0% |
| TGCTTTGTGAAAGATGTAAT+AGG | + | chr8_3:47574043-47574062 | Msa1291960:intron | 30.0% | |
| GCAAAAGAAAGAAAAAATGG+AGG | - | chr8_3:47574098-47574117 | None:intergenic | 30.0% | |
| ! | CTGTGATTTAAAACCTTGTT+TGG | - | chr8_3:47574184-47574203 | None:intergenic | 30.0% |
| TAATGTCCCAGTTGAAATTA+TGG | + | chr8_3:47574321-47574340 | Msa1291960:intron | 30.0% | |
| ACAAAAAATTGTGCAAAAGG+TGG | - | chr8_3:47574685-47574704 | None:intergenic | 30.0% | |
| ! | TGTGTATTTGTTAGGTGTTT+GGG | - | chr8_3:47574728-47574747 | None:intergenic | 30.0% |
| ! | ATGTGTATTTGTTAGGTGTT+TGG | - | chr8_3:47574729-47574748 | None:intergenic | 30.0% |
| ACTAATTTAGTTAGTTGTCC+TGG | - | chr8_3:47574835-47574854 | None:intergenic | 30.0% | |
| AGGACAACTAACTAAATTAG+TGG | + | chr8_3:47574834-47574853 | Msa1291960:CDS | 30.0% | |
| ATCAATATAGTTGCATACCT+TGG | - | chr8_3:47574941-47574960 | None:intergenic | 30.0% | |
| ATGTATATGAAGGTTGAAGA+AGG | + | chr8_3:47575492-47575511 | Msa1291960:intron | 30.0% | |
| ! | ATATACAACTTGTTTGGGAA+TGG | + | chr8_3:47575770-47575789 | Msa1291960:three_prime_UTR | 30.0% |
| !! | CCTAATTTGTTGACTATTTG+TGG | - | chr8_3:47575799-47575818 | None:intergenic | 30.0% |
| CCACAAATAGTCAACAAATT+AGG | + | chr8_3:47575796-47575815 | Msa1291960:three_prime_UTR | 30.0% | |
| AATAGTCAACAAATTAGGGT+TGG | + | chr8_3:47575801-47575820 | Msa1291960:three_prime_UTR | 30.0% | |
| !!! | TGTCAGCATTTTTTACCATT+AGG | - | chr8_3:47575829-47575848 | None:intergenic | 30.0% |
| TCTTTGTTCTTGCAAACTCT+TGG | - | chr8_3:47573686-47573705 | None:intergenic | 35.0% | |
| TTCCCTTAATAGCAAAGATG+GGG | + | chr8_3:47573905-47573924 | Msa1291960:intron | 35.0% | |
| CTTTATGACTATCAATGAGG+TGG | + | chr8_3:47573998-47574017 | Msa1291960:intron | 35.0% | |
| AGCACAAAACAATGAAGACA+TGG | + | chr8_3:47574648-47574667 | Msa1291960:CDS | 35.0% | |
| ! | GTTTGGGACCATGTATATTT+AGG | - | chr8_3:47574712-47574731 | None:intergenic | 35.0% |
| GTCTTGGATGTGTATTTGTT+AGG | - | chr8_3:47574736-47574755 | None:intergenic | 35.0% | |
| CAAACCTTAGAATTCTCACT+AGG | + | chr8_3:47574803-47574822 | Msa1291960:CDS | 35.0% | |
| TTGTCCTAGTGAGAATTCTA+AGG | - | chr8_3:47574810-47574829 | None:intergenic | 35.0% | |
| CAACTAACTAAATTAGTGGC+TGG | + | chr8_3:47574838-47574857 | Msa1291960:CDS | 35.0% | |
| CATTGATATGTAGGATGCTA+AGG | - | chr8_3:47574879-47574898 | None:intergenic | 35.0% | |
| ! | TGGTAGTGACATTGATATGT+AGG | - | chr8_3:47574888-47574907 | None:intergenic | 35.0% |
| GTAGAATACCAAAGGTTGTA+TGG | - | chr8_3:47574908-47574927 | None:intergenic | 35.0% | |
| CTGATAGAGTAGAATACCAA+AGG | - | chr8_3:47574916-47574935 | None:intergenic | 35.0% | |
| CCTCAATTCTTCCAAGTAAA+TGG | - | chr8_3:47575560-47575579 | None:intergenic | 35.0% | |
| CCATTTACTTGGAAGAATTG+AGG | + | chr8_3:47575557-47575576 | Msa1291960:CDS | 35.0% | |
| !! | TTGCAGATGGTTTGAGTTTT+TGG | + | chr8_3:47575653-47575672 | Msa1291960:three_prime_UTR | 35.0% |
| CTATAGACTATAGTAGCTGT+TGG | + | chr8_3:47575726-47575745 | Msa1291960:three_prime_UTR | 35.0% | |
| AAATTAGGGTTGGAACCTAA+TGG | + | chr8_3:47575811-47575830 | Msa1291960:three_prime_UTR | 35.0% | |
| TGAGCAACAACATCATCATG+AGG | + | chr8_3:47573556-47573575 | Msa1291960:CDS | 40.0% | |
| ATAATCCTCAAGTGGTGCAA+AGG | + | chr8_3:47573642-47573661 | Msa1291960:CDS | 40.0% | |
| AAGTGGTGCAAAGGAAGAAA+AGG | + | chr8_3:47573651-47573670 | Msa1291960:CDS | 40.0% | |
| TGCCTGAATCCTATGTTCAA+AGG | + | chr8_3:47573798-47573817 | Msa1291960:CDS | 40.0% | |
| GCCTGAATCCTATGTTCAAA+GGG | + | chr8_3:47573799-47573818 | Msa1291960:CDS | 40.0% | |
| ACCCTTTGAACATAGGATTC+AGG | - | chr8_3:47573803-47573822 | None:intergenic | 40.0% | |
| !! | CTCCCCATCTTTGCTATTAA+GGG | - | chr8_3:47573910-47573929 | None:intergenic | 40.0% |
| !! | TCTCCCCATCTTTGCTATTA+AGG | - | chr8_3:47573911-47573930 | None:intergenic | 40.0% |
| ! | GGGGAGATAGATTCTTTTCT+AGG | + | chr8_3:47573924-47573943 | Msa1291960:intron | 40.0% |
| GGATTGAGTCTATGGTTAAG+CGG | - | chr8_3:47574282-47574301 | None:intergenic | 40.0% | |
| ! | GTCTTTGAGGATTGAGTCTA+TGG | - | chr8_3:47574290-47574309 | None:intergenic | 40.0% |
| TAGCTCCTTCACAAACTCTA+TGG | - | chr8_3:47574572-47574591 | None:intergenic | 40.0% | |
| TGTAACCTCGATATCAGCTA+TGG | - | chr8_3:47574767-47574786 | None:intergenic | 40.0% | |
| TGTCACTACCATACAACCTT+TGG | + | chr8_3:47574897-47574916 | Msa1291960:CDS | 40.0% | |
| ATTCTACTCTATCAGTGCCA+AGG | + | chr8_3:47574921-47574940 | Msa1291960:CDS | 40.0% | |
| GTTGAAGAAGGATTCCAACT+TGG | + | chr8_3:47575504-47575523 | Msa1291960:CDS | 40.0% | |
| TTCCAACTTGGTTCAGTAGA+CGG | + | chr8_3:47575516-47575535 | Msa1291960:CDS | 40.0% | |
| CAAGTAGCATCTAAAGAGAG+TGG | + | chr8_3:47575616-47575635 | Msa1291960:three_prime_UTR | 40.0% | |
| ACAACATCATCATGAGGCAG+AGG | + | chr8_3:47573562-47573581 | Msa1291960:CDS | 45.0% | |
| TTCTTCCTTTGCACCACTTG+AGG | - | chr8_3:47573650-47573669 | None:intergenic | 45.0% | |
| ACTTCTTGCGCTACCAAACA+AGG | + | chr8_3:47574168-47574187 | Msa1291960:intron | 45.0% | |
| TATGGCACCACCTACTATTG+AGG | - | chr8_3:47574554-47574573 | None:intergenic | 45.0% | |
| !! | TGGTGCCATAGAGTTTGTGA+AGG | + | chr8_3:47574564-47574583 | Msa1291960:CDS | 45.0% |
| GATATCAGCTATGGCAGCTT+TGG | - | chr8_3:47574758-47574777 | None:intergenic | 45.0% | |
| ATTCTCACTAGGACAAGACC+AGG | + | chr8_3:47574814-47574833 | Msa1291960:CDS | 45.0% | |
| TTCCGTCTACTGAACCAAGT+TGG | - | chr8_3:47575521-47575540 | None:intergenic | 45.0% | |
| ACAGCAGTGCACCATTTACT+TGG | + | chr8_3:47575546-47575565 | Msa1291960:CDS | 45.0% | |
| GGTGACCAAGCCTCAATAGT+AGG | + | chr8_3:47574541-47574560 | Msa1291960:CDS | 50.0% | |
| GACCAAGCCTCAATAGTAGG+TGG | + | chr8_3:47574544-47574563 | Msa1291960:CDS | 50.0% | |
| CACCACCTACTATTGAGGCT+TGG | - | chr8_3:47574549-47574568 | None:intergenic | 50.0% | |
| ! | AGCTATGGCAGCTTTGGTCT+TGG | - | chr8_3:47574752-47574771 | None:intergenic | 50.0% |
| AGCTGCCATAGCTGATATCG+AGG | + | chr8_3:47574759-47574778 | Msa1291960:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 47573410 | 47575885 | 47573410 | ID=Msa1291960;Name=Msa1291960 |
| chr8_3 | mRNA | 47573410 | 47575885 | 47573410 | ID=Msa1291960-mRNA-1;Parent=Msa1291960;Name=Msa1291960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|280|304 |
| chr8_3 | exon | 47573410 | 47573820 | 47573410 | ID=Msa1291960-mRNA-1:exon:13234;Parent=Msa1291960-mRNA-1 |
| chr8_3 | exon | 47574541 | 47574942 | 47574541 | ID=Msa1291960-mRNA-1:exon:13235;Parent=Msa1291960-mRNA-1 |
| chr8_3 | exon | 47575504 | 47575885 | 47575504 | ID=Msa1291960-mRNA-1:exon:13236;Parent=Msa1291960-mRNA-1 |
| chr8_3 | CDS | 47573410 | 47573820 | 47573410 | ID=Msa1291960-mRNA-1:cds;Parent=Msa1291960-mRNA-1 |
| chr8_3 | CDS | 47574541 | 47574942 | 47574541 | ID=Msa1291960-mRNA-1:cds;Parent=Msa1291960-mRNA-1 |
| chr8_3 | CDS | 47575504 | 47575605 | 47575504 | ID=Msa1291960-mRNA-1:cds;Parent=Msa1291960-mRNA-1 |
| chr8_3 | three_prime_UTR | 47575606 | 47575885 | 47575606 | ID=Msa1291960-mRNA-1:three_prime_utr;Parent=Msa1291960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
