Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334780 | AET03267.1 | 93.610 | 313 | 10 | 3 | 1 | 304 | 1 | 312 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334780 | sp|Q9C7T4|BH096_ARATH | 56.872 | 211 | 82 | 3 | 95 | 301 | 114 | 319 | 3.00e-70 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334780 | A0A396GLS4 | 93.610 | 313 | 10 | 3 | 1 | 304 | 11 | 322 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1334780 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1291960 | Msa1334780 | 0.891031 | 5.757404e-74 | -8.615850e-47 |
| Msa1197630 | Msa1334780 | 0.996928 | 2.841845e-234 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334780 | MtrunA17_Chr8g0366551 | 93.610 | 313 | 10 | 3 | 1 | 304 | 11 | 322 | 0.0 | 591 |
| Msa1334780 | MtrunA17_Chr3g0132471 | 49.442 | 269 | 111 | 6 | 46 | 298 | 56 | 315 | 7.81e-82 | 250 |
| Msa1334780 | MtrunA17_Chr7g0273081 | 44.521 | 292 | 135 | 7 | 27 | 301 | 31 | 312 | 7.15e-73 | 227 |
| Msa1334780 | MtrunA17_Chr1g0191571 | 53.052 | 213 | 85 | 2 | 99 | 301 | 129 | 336 | 1.20e-72 | 227 |
| Msa1334780 | MtrunA17_Chr5g0426851 | 50.679 | 221 | 102 | 3 | 85 | 300 | 79 | 297 | 4.33e-68 | 214 |
| Msa1334780 | MtrunA17_Chr0c01g0489461 | 43.346 | 263 | 124 | 6 | 60 | 301 | 140 | 398 | 3.52e-58 | 191 |
| Msa1334780 | MtrunA17_Chr8g0345871 | 49.500 | 200 | 92 | 2 | 96 | 295 | 171 | 361 | 1.58e-52 | 176 |
| Msa1334780 | MtrunA17_Chr2g0287761 | 36.782 | 174 | 107 | 2 | 106 | 278 | 1 | 172 | 2.09e-35 | 126 |
| Msa1334780 | MtrunA17_Chr1g0158941 | 33.962 | 212 | 114 | 3 | 95 | 280 | 70 | 281 | 4.96e-29 | 112 |
| Msa1334780 | MtrunA17_Chr5g0411341 | 26.457 | 223 | 147 | 5 | 54 | 276 | 454 | 659 | 2.58e-13 | 70.5 |
| Msa1334780 | MtrunA17_Chr1g0211081 | 28.934 | 197 | 109 | 7 | 86 | 264 | 305 | 488 | 2.26e-12 | 67.4 |
| Msa1334780 | MtrunA17_Chr3g0126361 | 82.353 | 34 | 6 | 0 | 104 | 137 | 99 | 132 | 2.45e-12 | 63.5 |
| Msa1334780 | MtrunA17_Chr8g0366751 | 29.319 | 191 | 126 | 4 | 86 | 276 | 447 | 628 | 6.01e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1334780 | AT1G72210.1 | 56.872 | 211 | 82 | 3 | 95 | 301 | 114 | 319 | 3.05e-71 | 223 |
| Msa1334780 | AT1G22490.1 | 44.186 | 301 | 144 | 7 | 8 | 298 | 17 | 303 | 2.09e-69 | 218 |
| Msa1334780 | AT5G46690.1 | 47.500 | 320 | 128 | 8 | 1 | 298 | 1 | 302 | 3.25e-64 | 205 |
| Msa1334780 | AT1G72210.2 | 56.593 | 182 | 70 | 3 | 95 | 272 | 114 | 290 | 3.89e-59 | 192 |
| Msa1334780 | AT1G22490.2 | 42.909 | 275 | 133 | 7 | 8 | 272 | 17 | 277 | 4.40e-58 | 189 |
| Msa1334780 | AT3G24140.2 | 45.540 | 213 | 103 | 2 | 73 | 272 | 162 | 374 | 1.04e-53 | 180 |
| Msa1334780 | AT3G24140.1 | 45.540 | 213 | 103 | 2 | 73 | 272 | 162 | 374 | 1.22e-53 | 181 |
| Msa1334780 | AT5G46690.2 | 43.878 | 294 | 125 | 8 | 1 | 272 | 1 | 276 | 1.70e-51 | 171 |
| Msa1334780 | AT4G01460.1 | 44.118 | 204 | 111 | 2 | 96 | 298 | 105 | 306 | 6.37e-48 | 163 |
| Msa1334780 | AT4G01460.2 | 44.118 | 204 | 111 | 2 | 96 | 298 | 105 | 306 | 6.37e-48 | 163 |
| Msa1334780 | AT5G65320.1 | 41.429 | 210 | 102 | 4 | 100 | 298 | 96 | 295 | 2.10e-43 | 150 |
| Msa1334780 | AT2G46810.2 | 43.434 | 198 | 100 | 4 | 97 | 293 | 112 | 298 | 1.44e-39 | 140 |
| Msa1334780 | AT3G61950.2 | 43.564 | 202 | 93 | 5 | 96 | 292 | 117 | 302 | 2.16e-39 | 140 |
| Msa1334780 | AT2G46810.3 | 43.434 | 198 | 100 | 4 | 97 | 293 | 172 | 358 | 3.71e-39 | 141 |
| Msa1334780 | AT5G65320.2 | 42.077 | 183 | 86 | 3 | 100 | 272 | 96 | 268 | 4.29e-39 | 139 |
| Msa1334780 | AT2G46810.1 | 43.216 | 199 | 99 | 4 | 97 | 293 | 184 | 370 | 5.82e-39 | 141 |
| Msa1334780 | AT3G61950.1 | 43.564 | 202 | 93 | 5 | 96 | 292 | 168 | 353 | 7.81e-39 | 140 |
| Msa1334780 | AT3G61950.6 | 45.238 | 168 | 72 | 4 | 96 | 259 | 117 | 268 | 1.37e-36 | 133 |
| Msa1334780 | AT3G61950.3 | 45.238 | 168 | 72 | 4 | 96 | 259 | 168 | 319 | 4.17e-36 | 133 |
| Msa1334780 | AT2G46810.4 | 44.944 | 178 | 84 | 4 | 97 | 272 | 112 | 277 | 3.08e-34 | 127 |
| Msa1334780 | AT3G06120.1 | 34.659 | 176 | 103 | 2 | 106 | 272 | 1 | 173 | 1.54e-30 | 114 |
| Msa1334780 | AT5G53210.2 | 62.338 | 77 | 28 | 1 | 97 | 173 | 94 | 169 | 2.73e-25 | 103 |
| Msa1334780 | AT5G53210.1 | 66.667 | 69 | 22 | 1 | 97 | 165 | 94 | 161 | 2.86e-25 | 103 |
| Msa1334780 | AT3G61950.4 | 67.442 | 43 | 14 | 0 | 95 | 137 | 167 | 209 | 1.74e-12 | 65.9 |
| Msa1334780 | AT3G61950.5 | 67.442 | 43 | 14 | 0 | 95 | 137 | 167 | 209 | 1.74e-12 | 65.9 |
Find 63 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAAATAGTCAACAAATT+AGG | 0.131819 | 8_4:+55296506 | Msa1334780:three_prime_UTR |
| CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8_4:-55296272 | None:intergenic |
| TACAAATGAGTCTAGTTTCT+TGG | 0.228449 | 8_4:+55294228 | Msa1334780:CDS |
| CACAAATAGTCAACAAATTA+GGG | 0.233075 | 8_4:+55296507 | Msa1334780:three_prime_UTR |
| CCTAATTTGTTGACTATTTG+TGG | 0.258267 | 8_4:-55296506 | None:intergenic |
| ACAAGTATATACAACTTGTT+TGG | 0.271033 | 8_4:+55296474 | Msa1334780:three_prime_UTR |
| ACTCATTTGTAGTATGAATA+TGG | 0.284036 | 8_4:-55294216 | None:intergenic |
| TGAATATGGTTACTACTAAA+TGG | 0.300073 | 8_4:-55294202 | None:intergenic |
| TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8_4:-55295518 | None:intergenic |
| ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8_4:-55294517 | None:intergenic |
| ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8_4:-55295437 | None:intergenic |
| GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8_4:-55295444 | None:intergenic |
| TTGTGATAATACAATGGCTT+TGG | 0.360011 | 8_4:+55294114 | None:intergenic |
| AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8_4:-55295460 | None:intergenic |
| TCTTTGTTCTTACAAACTCT+TGG | 0.388402 | 8_4:-55294400 | None:intergenic |
| TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8_4:-55295436 | None:intergenic |
| AAGTAGAAAGAGACAATCTA+TGG | 0.398325 | 8_4:+55294318 | Msa1334780:CDS |
| TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8_4:-55295280 | None:intergenic |
| ACAGCAGTTCACCATTTACT+TGG | 0.428976 | 8_4:+55296261 | Msa1334780:CDS |
| CAAGTATATACAACTTGTTT+GGG | 0.431060 | 8_4:+55296475 | Msa1334780:three_prime_UTR |
| GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8_4:-55295466 | None:intergenic |
| ACTAATTTAGTTAGTTGTCC+TGG | 0.441622 | 8_4:-55295543 | None:intergenic |
| TGTCACTACCATACAACCTT+TGG | 0.451551 | 8_4:+55295608 | Msa1334780:CDS |
| AAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8_4:-55294524 | None:intergenic |
| AAATTAGGGTTGGAACCTAA+TGG | 0.463154 | 8_4:+55296521 | Msa1334780:three_prime_UTR |
| AACAAGTTGTATATACTTGT+AGG | 0.464603 | 8_4:-55296471 | None:intergenic |
| AGGACAACTAACTAAATTAG+TGG | 0.470600 | 8_4:+55295545 | Msa1334780:CDS |
| GTAGAATACCAAAGGTTGTA+TGG | 0.472728 | 8_4:-55295616 | None:intergenic |
| GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8_4:+55294516 | Msa1334780:CDS |
| ATATACAACTTGTTTGGGAA+TGG | 0.490206 | 8_4:+55296480 | Msa1334780:three_prime_UTR |
| TTGTGTATCCTCAATATACA+TGG | 0.490488 | 8_4:+55295412 | Msa1334780:CDS |
| CCATTTACTTGGAAGAATTG+AGG | 0.491479 | 8_4:+55296272 | Msa1334780:CDS |
| CTAATTTCTTGTTAATGTGA+GGG | 0.496112 | 8_4:+55296306 | Msa1334780:exon |
| ACTAATTTCTTGTTAATGTG+AGG | 0.501557 | 8_4:+55296305 | Msa1334780:exon |
| ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8_4:+55296207 | Msa1334780:intron |
| GTTTGGGACCATGTATATTG+AGG | 0.512489 | 8_4:-55295420 | None:intergenic |
| GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8_4:+55295252 | Msa1334780:CDS |
| CATTGATATGTAGGATGCTA+AGG | 0.516296 | 8_4:-55295587 | None:intergenic |
| TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8_4:+55296231 | Msa1334780:CDS |
| TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8_4:+55294515 | Msa1334780:CDS |
| CAACTAACTAAATTAGTGGC+TGG | 0.528440 | 8_4:+55295549 | Msa1334780:CDS |
| GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8_4:+55296219 | Msa1334780:CDS |
| ACGAAAATAATATTTGCAGA+TGG | 0.537432 | 8_4:+55296355 | Msa1334780:three_prime_UTR |
| AATAGTCAACAAATTAGGGT+TGG | 0.543208 | 8_4:+55296511 | Msa1334780:three_prime_UTR |
| CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8_4:-55295257 | None:intergenic |
| TGGTAGTGACATTGATATGT+AGG | 0.552077 | 8_4:-55295596 | None:intergenic |
| TTCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8_4:-55296233 | None:intergenic |
| AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8_4:+55294351 | Msa1334780:CDS |
| TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8_4:-55295475 | None:intergenic |
| CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8_4:+55295514 | Msa1334780:CDS |
| ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8_4:+55294359 | Msa1334780:CDS |
| CTATAGACTATAGTAGCTGT+TGG | 0.595201 | 8_4:+55296436 | Msa1334780:three_prime_UTR |
| ACAACATCATCATGAGGCAG+AGG | 0.602496 | 8_4:+55294279 | Msa1334780:CDS |
| CAAGTAGCATCTAAAGAGAG+TGG | 0.604413 | 8_4:+55296331 | Msa1334780:three_prime_UTR |
| TATGGCACCACCTACTATTG+AGG | 0.605310 | 8_4:-55295262 | None:intergenic |
| ATTCTACTCTATCAGTGCCA+AGG | 0.611555 | 8_4:+55295632 | Msa1334780:CDS |
| ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8_4:+55295525 | Msa1334780:CDS |
| CTGATAGAGTAGAATACCAA+AGG | 0.629072 | 8_4:-55295624 | None:intergenic |
| AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8_4:+55295359 | Msa1334780:CDS |
| AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8_4:+55295470 | Msa1334780:CDS |
| GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8_4:+55295255 | Msa1334780:CDS |
| TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8_4:+55295275 | Msa1334780:CDS |
| TGAGCAACAACATCATCATG+AGG | 0.682900 | 8_4:+55294273 | Msa1334780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTAA+TGG | + | chr8_4:55296052-55296071 | Msa1334780:intron | 0.0% |
| !! | ATATTTAGCTAAAATATATA+TGG | + | chr8_4:55296153-55296172 | Msa1334780:intron | 10.0% |
| !! | TTATTTATTTATGTATATGA+AGG | + | chr8_4:55296197-55296216 | Msa1334780:intron | 10.0% |
| !!! | CAATTTTTTGTTTTGTTATA+GGG | + | chr8_4:55295231-55295250 | Msa1334780:intron | 15.0% |
| !!! | GAATTTTCATAATTTATACA+AGG | - | chr8_4:55296127-55296146 | None:intergenic | 15.0% |
| !!! | TACTTCATTTTTTTGTTGTT+GGG | + | chr8_4:55294573-55294592 | Msa1334780:intron | 20.0% |
| !! | AAAGCAAAAGAAAGAAAAAA+TGG | - | chr8_4:55294818-55294837 | None:intergenic | 20.0% |
| !! | ATTTATACATATACTTCTTG+CGG | + | chr8_4:55294873-55294892 | Msa1334780:intron | 20.0% |
| !!! | TATATATGAAGCTTTTCAAA+TGG | - | chr8_4:55295155-55295174 | None:intergenic | 20.0% |
| !!! | TAATCTTTACAAGTTCTAAA+TGG | + | chr8_4:55295182-55295201 | Msa1334780:intron | 20.0% |
| !!! | GCAATTTTTTGTTTTGTTAT+AGG | + | chr8_4:55295230-55295249 | Msa1334780:intron | 20.0% |
| !! | ATTACTATCATATCAAATGA+AGG | - | chr8_4:55295675-55295694 | None:intergenic | 20.0% |
| !! | GAAAATAATTAGAGATAGAA+AGG | - | chr8_4:55295892-55295911 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTGTTTATCACT+TGG | - | chr8_4:55296000-55296019 | None:intergenic | 20.0% |
| ! | TGAATATGGTTACTACTAAA+TGG | - | chr8_4:55294205-55294224 | None:intergenic | 25.0% |
| ! | ACTCATTTGTAGTATGAATA+TGG | - | chr8_4:55294219-55294238 | None:intergenic | 25.0% |
| !!! | GTTCATTCATTTGTTTTCTA+CGG | - | chr8_4:55294471-55294490 | None:intergenic | 25.0% |
| !!! | GTACTTCATTTTTTTGTTGT+TGG | + | chr8_4:55294572-55294591 | Msa1334780:intron | 25.0% |
| !!! | TTCTTTCTTTTGCTTTTGTA+TGG | + | chr8_4:55294822-55294841 | Msa1334780:intron | 25.0% |
| !! | TCATATTTAGAGTTGCATTA+TGG | + | chr8_4:55294927-55294946 | Msa1334780:intron | 25.0% |
| !!! | TAATGTTTTTGATGTCTTTG+AGG | - | chr8_4:55295022-55295041 | None:intergenic | 25.0% |
| ! | ATGTTACCATAATTTCAACT+GGG | - | chr8_4:55295049-55295068 | None:intergenic | 25.0% |
| ! | AATGTTACCATAATTTCAAC+TGG | - | chr8_4:55295050-55295069 | None:intergenic | 25.0% |
| ! | TACACAAAAAATTGTGCAAA+AGG | - | chr8_4:55295399-55295418 | None:intergenic | 25.0% |
| ! | ACTAATTTCTTGTTAATGTG+AGG | + | chr8_4:55296305-55296324 | Msa1334780:exon | 25.0% |
| ! | CTAATTTCTTGTTAATGTGA+GGG | + | chr8_4:55296306-55296325 | Msa1334780:exon | 25.0% |
| ! | ACGAAAATAATATTTGCAGA+TGG | + | chr8_4:55296355-55296374 | Msa1334780:three_prime_UTR | 25.0% |
| ! | AACAAGTTGTATATACTTGT+AGG | - | chr8_4:55296474-55296493 | None:intergenic | 25.0% |
| !! | ACAAGTATATACAACTTGTT+TGG | + | chr8_4:55296474-55296493 | Msa1334780:three_prime_UTR | 25.0% |
| !! | CAAGTATATACAACTTGTTT+GGG | + | chr8_4:55296475-55296494 | Msa1334780:three_prime_UTR | 25.0% |
| ! | CACAAATAGTCAACAAATTA+GGG | + | chr8_4:55296507-55296526 | Msa1334780:three_prime_UTR | 25.0% |
| ! | TACAAATGAGTCTAGTTTCT+TGG | + | chr8_4:55294228-55294247 | Msa1334780:CDS | 30.0% |
| AAGTAGAAAGAGACAATCTA+TGG | + | chr8_4:55294318-55294337 | Msa1334780:CDS | 30.0% | |
| AACAATGAATAATCCTCAAG+TGG | + | chr8_4:55294351-55294370 | Msa1334780:CDS | 30.0% | |
| TCTTTGTTCTTACAAACTCT+TGG | - | chr8_4:55294403-55294422 | None:intergenic | 30.0% | |
| AAAACAAACCCTTTGAACAT+AGG | - | chr8_4:55294527-55294546 | None:intergenic | 30.0% | |
| ATTTCCCTTAATAGCAAGAT+TGG | + | chr8_4:55294621-55294640 | Msa1334780:intron | 30.0% | |
| TTTCCCTTAATAGCAAGATT+GGG | + | chr8_4:55294622-55294641 | Msa1334780:intron | 30.0% | |
| ACACTTTATGACTATCAATG+AGG | + | chr8_4:55294712-55294731 | Msa1334780:intron | 30.0% | |
| TTTATGACTATCAATGAGGT+GGG | + | chr8_4:55294716-55294735 | Msa1334780:intron | 30.0% | |
| ! | AAGCATATTTGTGCATGTTT+TGG | - | chr8_4:55294745-55294764 | None:intergenic | 30.0% |
| TGCTTTGTGAAAGATGTAAT+AGG | + | chr8_4:55294760-55294779 | Msa1334780:intron | 30.0% | |
| GCAAAAGAAAGAAAAAATGG+AGG | - | chr8_4:55294815-55294834 | None:intergenic | 30.0% | |
| ! | CTGTGATTTAAAACCTTGTT+TGG | - | chr8_4:55294901-55294920 | None:intergenic | 30.0% |
| TAATGTCCCAGTTGAAATTA+TGG | + | chr8_4:55295040-55295059 | Msa1334780:intron | 30.0% | |
| ACAAAAAATTGTGCAAAAGG+TGG | - | chr8_4:55295396-55295415 | None:intergenic | 30.0% | |
| TTGTGTATCCTCAATATACA+TGG | + | chr8_4:55295412-55295431 | Msa1334780:CDS | 30.0% | |
| ! | TGTGTATTTGTTAGGTGTTT+GGG | - | chr8_4:55295439-55295458 | None:intergenic | 30.0% |
| ! | ATGTGTATTTGTTAGGTGTT+TGG | - | chr8_4:55295440-55295459 | None:intergenic | 30.0% |
| ACTAATTTAGTTAGTTGTCC+TGG | - | chr8_4:55295546-55295565 | None:intergenic | 30.0% | |
| AGGACAACTAACTAAATTAG+TGG | + | chr8_4:55295545-55295564 | Msa1334780:CDS | 30.0% | |
| ATCAATATAGTTGCATACCT+TGG | - | chr8_4:55295652-55295671 | None:intergenic | 30.0% | |
| ATGTATATGAAGGTTGAAGA+AGG | + | chr8_4:55296207-55296226 | Msa1334780:intron | 30.0% | |
| ! | ATATACAACTTGTTTGGGAA+TGG | + | chr8_4:55296480-55296499 | Msa1334780:three_prime_UTR | 30.0% |
| !! | CCTAATTTGTTGACTATTTG+TGG | - | chr8_4:55296509-55296528 | None:intergenic | 30.0% |
| CCACAAATAGTCAACAAATT+AGG | + | chr8_4:55296506-55296525 | Msa1334780:three_prime_UTR | 30.0% | |
| AATAGTCAACAAATTAGGGT+TGG | + | chr8_4:55296511-55296530 | Msa1334780:three_prime_UTR | 30.0% | |
| !!! | TGTCAGCATTTTTTACCATT+AGG | - | chr8_4:55296539-55296558 | None:intergenic | 30.0% |
| !! | TCTCCCAATCTTGCTATTAA+GGG | - | chr8_4:55294628-55294647 | None:intergenic | 35.0% |
| !! | ATCTCCCAATCTTGCTATTA+AGG | - | chr8_4:55294629-55294648 | None:intergenic | 35.0% |
| CTTTATGACTATCAATGAGG+TGG | + | chr8_4:55294715-55294734 | Msa1334780:intron | 35.0% | |
| AGCACAAAACAATGAAGACA+TGG | + | chr8_4:55295359-55295378 | Msa1334780:CDS | 35.0% | |
| GTCTTGGATGTGTATTTGTT+AGG | - | chr8_4:55295447-55295466 | None:intergenic | 35.0% | |
| CAAACCTTAGAATTCTCACT+AGG | + | chr8_4:55295514-55295533 | Msa1334780:CDS | 35.0% | |
| TTGTCCTAGTGAGAATTCTA+AGG | - | chr8_4:55295521-55295540 | None:intergenic | 35.0% | |
| CAACTAACTAAATTAGTGGC+TGG | + | chr8_4:55295549-55295568 | Msa1334780:CDS | 35.0% | |
| CATTGATATGTAGGATGCTA+AGG | - | chr8_4:55295590-55295609 | None:intergenic | 35.0% | |
| ! | TGGTAGTGACATTGATATGT+AGG | - | chr8_4:55295599-55295618 | None:intergenic | 35.0% |
| GTAGAATACCAAAGGTTGTA+TGG | - | chr8_4:55295619-55295638 | None:intergenic | 35.0% | |
| CTGATAGAGTAGAATACCAA+AGG | - | chr8_4:55295627-55295646 | None:intergenic | 35.0% | |
| CCTCAATTCTTCCAAGTAAA+TGG | - | chr8_4:55296275-55296294 | None:intergenic | 35.0% | |
| CCATTTACTTGGAAGAATTG+AGG | + | chr8_4:55296272-55296291 | Msa1334780:CDS | 35.0% | |
| !! | TTGCAGATGGTTTGAGTTTT+TGG | + | chr8_4:55296368-55296387 | Msa1334780:three_prime_UTR | 35.0% |
| CTATAGACTATAGTAGCTGT+TGG | + | chr8_4:55296436-55296455 | Msa1334780:three_prime_UTR | 35.0% | |
| AAATTAGGGTTGGAACCTAA+TGG | + | chr8_4:55296521-55296540 | Msa1334780:three_prime_UTR | 35.0% | |
| TGAGCAACAACATCATCATG+AGG | + | chr8_4:55294273-55294292 | Msa1334780:CDS | 40.0% | |
| ATAATCCTCAAGTGGTGCAA+AGG | + | chr8_4:55294359-55294378 | Msa1334780:CDS | 40.0% | |
| ! | TTTTTCCTTTGCACCACTTG+AGG | - | chr8_4:55294367-55294386 | None:intergenic | 40.0% |
| AAGTGGTGCAAAGGAAAAAG+AGG | + | chr8_4:55294368-55294387 | Msa1334780:CDS | 40.0% | |
| TGCCTGAATCCTATGTTCAA+AGG | + | chr8_4:55294515-55294534 | Msa1334780:CDS | 40.0% | |
| GCCTGAATCCTATGTTCAAA+GGG | + | chr8_4:55294516-55294535 | Msa1334780:CDS | 40.0% | |
| ACCCTTTGAACATAGGATTC+AGG | - | chr8_4:55294520-55294539 | None:intergenic | 40.0% | |
| ATTGAGTCTATGGTTAAGCG+CGG | - | chr8_4:55294999-55295018 | None:intergenic | 40.0% | |
| ! | GTCTTTGAGGATTGAGTCTA+TGG | - | chr8_4:55295009-55295028 | None:intergenic | 40.0% |
| TAGCTCCTTCACAAACTCTA+TGG | - | chr8_4:55295283-55295302 | None:intergenic | 40.0% | |
| ! | GTTTGGGACCATGTATATTG+AGG | - | chr8_4:55295423-55295442 | None:intergenic | 40.0% |
| TGTAACCTCGATATCAGCTA+TGG | - | chr8_4:55295478-55295497 | None:intergenic | 40.0% | |
| TGTCACTACCATACAACCTT+TGG | + | chr8_4:55295608-55295627 | Msa1334780:CDS | 40.0% | |
| ATTCTACTCTATCAGTGCCA+AGG | + | chr8_4:55295632-55295651 | Msa1334780:CDS | 40.0% | |
| GTTGAAGAAGGATTCCAACT+TGG | + | chr8_4:55296219-55296238 | Msa1334780:CDS | 40.0% | |
| TTCCAACTTGGTTCAGTAGA+CGG | + | chr8_4:55296231-55296250 | Msa1334780:CDS | 40.0% | |
| ACAGCAGTTCACCATTTACT+TGG | + | chr8_4:55296261-55296280 | Msa1334780:CDS | 40.0% | |
| CAAGTAGCATCTAAAGAGAG+TGG | + | chr8_4:55296331-55296350 | Msa1334780:three_prime_UTR | 40.0% | |
| ACAACATCATCATGAGGCAG+AGG | + | chr8_4:55294279-55294298 | Msa1334780:CDS | 45.0% | |
| ACTTCTTGCGGTACCAAACA+AGG | + | chr8_4:55294885-55294904 | Msa1334780:intron | 45.0% | |
| TATGGCACCACCTACTATTG+AGG | - | chr8_4:55295265-55295284 | None:intergenic | 45.0% | |
| !! | TGGTGCCATAGAGTTTGTGA+AGG | + | chr8_4:55295275-55295294 | Msa1334780:CDS | 45.0% |
| GATATCAGCTATGGCAGCTT+TGG | - | chr8_4:55295469-55295488 | None:intergenic | 45.0% | |
| ATTCTCACTAGGACAAGACC+AGG | + | chr8_4:55295525-55295544 | Msa1334780:CDS | 45.0% | |
| TTCCGTCTACTGAACCAAGT+TGG | - | chr8_4:55296236-55296255 | None:intergenic | 45.0% | |
| GGTGACCAAGCCTCAATAGT+AGG | + | chr8_4:55295252-55295271 | Msa1334780:CDS | 50.0% | |
| GACCAAGCCTCAATAGTAGG+TGG | + | chr8_4:55295255-55295274 | Msa1334780:CDS | 50.0% | |
| CACCACCTACTATTGAGGCT+TGG | - | chr8_4:55295260-55295279 | None:intergenic | 50.0% | |
| ! | AGCTATGGCAGCTTTGGTCT+TGG | - | chr8_4:55295463-55295482 | None:intergenic | 50.0% |
| AGCTGCCATAGCTGATATCG+AGG | + | chr8_4:55295470-55295489 | Msa1334780:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 55294127 | 55296595 | 55294127 | ID=Msa1334780;Name=Msa1334780 |
| chr8_4 | mRNA | 55294127 | 55296595 | 55294127 | ID=Msa1334780-mRNA-1;Parent=Msa1334780;Name=Msa1334780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|1|1|1|3|275|304 |
| chr8_4 | exon | 55294127 | 55294537 | 55294127 | ID=Msa1334780-mRNA-1:exon:17288;Parent=Msa1334780-mRNA-1 |
| chr8_4 | exon | 55295252 | 55295653 | 55295252 | ID=Msa1334780-mRNA-1:exon:17289;Parent=Msa1334780-mRNA-1 |
| chr8_4 | exon | 55296219 | 55296595 | 55296219 | ID=Msa1334780-mRNA-1:exon:17290;Parent=Msa1334780-mRNA-1 |
| chr8_4 | CDS | 55294127 | 55294537 | 55294127 | ID=Msa1334780-mRNA-1:cds;Parent=Msa1334780-mRNA-1 |
| chr8_4 | CDS | 55295252 | 55295653 | 55295252 | ID=Msa1334780-mRNA-1:cds;Parent=Msa1334780-mRNA-1 |
| chr8_4 | CDS | 55296219 | 55296320 | 55296219 | ID=Msa1334780-mRNA-1:cds;Parent=Msa1334780-mRNA-1 |
| chr8_4 | three_prime_UTR | 55296321 | 55296595 | 55296321 | ID=Msa1334780-mRNA-1:three_prime_utr;Parent=Msa1334780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
