Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199100 | XP_013446213.1 | 91.667 | 120 | 4 | 1 | 1 | 114 | 1 | 120 | 1.30e-68 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1199090 | Msa1199100 | 0.918123 | 2.295154e-86 | -8.615850e-47 |
| Msa1199100 | Msa1252610 | 0.825433 | 4.700860e-54 | -8.615850e-47 |
| Msa1199100 | Msa1252620 | 0.809786 | 1.592829e-50 | -8.615850e-47 |
| Msa1199100 | Msa1293390 | 0.897880 | 9.152967e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199100 | MtrunA17_Chr8g0368861 | 91.667 | 120 | 4 | 1 | 1 | 114 | 1 | 120 | 1.20e-72 | 211 |
| Msa1199100 | MtrunA17_Chr8g0368831 | 90.833 | 120 | 5 | 1 | 1 | 114 | 9 | 128 | 5.61e-72 | 210 |
| Msa1199100 | MtrunA17_Chr7g0240471 | 49.495 | 99 | 42 | 3 | 23 | 114 | 20 | 117 | 7.65e-23 | 85.9 |
| Msa1199100 | MtrunA17_Chr7g0240451 | 49.474 | 95 | 40 | 3 | 27 | 114 | 24 | 117 | 2.11e-21 | 82.0 |
| Msa1199100 | MtrunA17_Chr7g0240441 | 57.407 | 54 | 22 | 1 | 57 | 110 | 38 | 90 | 9.39e-15 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1199100 | AT2G37870.1 | 67.257 | 113 | 28 | 2 | 8 | 114 | 6 | 115 | 6.32e-45 | 142 |
| Msa1199100 | AT5G05960.1 | 43.443 | 122 | 55 | 4 | 1 | 114 | 1 | 116 | 2.83e-24 | 89.7 |
| Msa1199100 | AT3G53980.2 | 45.745 | 94 | 44 | 2 | 27 | 114 | 22 | 114 | 6.99e-24 | 88.6 |
| Msa1199100 | AT3G53980.1 | 45.745 | 94 | 44 | 2 | 27 | 114 | 22 | 114 | 6.99e-24 | 88.6 |
Find 32 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACGCGCCTTGCAATTTC+GGG | 0.198281 | 8_1:-50961311 | None:intergenic |
| GGCATCAAGTGTGTTAATTT+TGG | 0.227059 | 8_1:+50960099 | Msa1199100:CDS |
| ATTGACGCGCCTTGCAATTT+CGG | 0.234970 | 8_1:-50961312 | None:intergenic |
| AGCTAGTCTAAGTCCATGTT+TGG | 0.350440 | 8_1:+50960171 | Msa1199100:CDS |
| ATCTTAGCTTGTTTAGCAAT+AGG | 0.376748 | 8_1:-50960298 | None:intergenic |
| TTCCTAATGTTGCATCTCTT+AGG | 0.378053 | 8_1:-50960346 | None:intergenic |
| AACAATACTAATGGAGTTCA+AGG | 0.429609 | 8_1:+50960039 | None:intergenic |
| AGAACAGAACAAAGACATCT+TGG | 0.469439 | 8_1:-50960268 | None:intergenic |
| CTTCCACATTTCTTTCCAGC+AGG | 0.469545 | 8_1:-50960373 | None:intergenic |
| CCAACTCTAGCACAACAAAC+TGG | 0.478057 | 8_1:-50960226 | None:intergenic |
| CTAGCTGCTGCTGACCCAAT+TGG | 0.492373 | 8_1:-50960154 | None:intergenic |
| TTCCTAAGAGATGCAACATT+AGG | 0.493031 | 8_1:+50960344 | Msa1199100:CDS |
| AACAGTGGTGATGTTTCTGT+TGG | 0.504837 | 8_1:+50960078 | Msa1199100:CDS |
| CCAGTTTGTTGTGCTAGAGT+TGG | 0.508251 | 8_1:+50960226 | Msa1199100:CDS |
| GAATGTGGAAGGACACCAAT+TGG | 0.510582 | 8_1:+50960139 | Msa1199100:CDS |
| CACATTTCTTTCCAGCAGGT+CGG | 0.514268 | 8_1:-50960369 | None:intergenic |
| AATGTGGAAGGACACCAATT+GGG | 0.520212 | 8_1:+50960140 | Msa1199100:CDS |
| AACATTAGGAACCGACCTGC+TGG | 0.527493 | 8_1:+50960358 | Msa1199100:CDS |
| TGACGCGCCTTGCAATTTCG+GGG | 0.543639 | 8_1:-50961310 | None:intergenic |
| GCTAGTCTAAGTCCATGTTT+GGG | 0.544347 | 8_1:+50960172 | Msa1199100:CDS |
| GACGCGCCTTGCAATTTCGG+GGG | 0.559754 | 8_1:-50961309 | None:intergenic |
| ACGCGCCTTGCAATTTCGGG+GGG | 0.574458 | 8_1:-50961308 | None:intergenic |
| AGTGAGGCAGCTGGTGAATG+TGG | 0.580104 | 8_1:+50960124 | Msa1199100:CDS |
| GGAACAGTGATAGCAATAGC+AGG | 0.582273 | 8_1:-50960325 | None:intergenic |
| CACTTCCTTGAAACCAAAGC+AGG | 0.584628 | 8_1:+50961215 | Msa1199100:exon |
| CGCGCCTTGCAATTTCGGGG+GGG | 0.588634 | 8_1:-50961307 | None:intergenic |
| TTACGTACAGCACCCAAACA+TGG | 0.602239 | 8_1:-50960184 | None:intergenic |
| CGACCTGCTGGAAAGAAATG+TGG | 0.609362 | 8_1:+50960370 | Msa1199100:CDS |
| GAAACATCACCACTGTTGCA+AGG | 0.618573 | 8_1:-50960072 | None:intergenic |
| ACTCTAGCACAACAAACTGG+TGG | 0.633479 | 8_1:-50960223 | None:intergenic |
| AAGAACTTTCCTTGCAACAG+TGG | 0.633689 | 8_1:+50960063 | Msa1199100:CDS |
| AGGCAGCTGGTGAATGTGGA+AGG | 0.638837 | 8_1:+50960128 | Msa1199100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTATTTTATTTACA+GGG | + | chr8_1:50961188-50961207 | Msa1199100:intron | 10.0% |
| !!! | CTTTTTTTATTTTATTTACA+GGG | + | chr8_1:50961188-50961207 | Msa1199100:intron | 10.0% |
| !! | AATAAAATAAAAAAAGGACA+AGG | - | chr8_1:50961184-50961203 | None:intergenic | 15.0% |
| !! | CCTGTAAATAAAATAAAAAA+AGG | - | chr8_1:50961190-50961209 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTATTTTATTTAC+AGG | + | chr8_1:50961187-50961206 | Msa1199100:intron | 15.0% |
| !! | AATAAAATAAAAAAAGGACA+AGG | - | chr8_1:50961184-50961203 | None:intergenic | 15.0% |
| !! | CCTGTAAATAAAATAAAAAA+AGG | - | chr8_1:50961190-50961209 | None:intergenic | 15.0% |
| !!! | CCTTTTTTTATTTTATTTAC+AGG | + | chr8_1:50961187-50961206 | Msa1199100:intron | 15.0% |
| !!! | TTAAGATGTTTTCAAAACTA+AGG | - | chr8_1:50960744-50960763 | None:intergenic | 20.0% |
| !! | CAAAAATATGAATCAATGAA+AGG | - | chr8_1:50960767-50960786 | None:intergenic | 20.0% |
| !!! | CTTTCATTGATTCATATTTT+TGG | + | chr8_1:50960765-50960784 | Msa1199100:intron | 20.0% |
| !!! | TTAAGATGTTTTCAAAACTA+AGG | - | chr8_1:50960744-50960763 | None:intergenic | 20.0% |
| !! | CAAAAATATGAATCAATGAA+AGG | - | chr8_1:50960767-50960786 | None:intergenic | 20.0% |
| !!! | CTTTCATTGATTCATATTTT+TGG | + | chr8_1:50960765-50960784 | Msa1199100:intron | 20.0% |
| ! | CTGACAATGTGTTTATAAAT+GGG | + | chr8_1:50960539-50960558 | Msa1199100:intron | 25.0% |
| ! | TGACAATGTGTTTATAAATG+GGG | + | chr8_1:50960540-50960559 | Msa1199100:intron | 25.0% |
| !! | CTATCAGGTTATACATTTTT+AGG | + | chr8_1:50960648-50960667 | Msa1199100:intron | 25.0% |
| ! | GTTTGATATTGTAAAACGTA+AGG | + | chr8_1:50960676-50960695 | Msa1199100:intron | 25.0% |
| !!! | TCATTTAGACTTTGTTGTTA+GGG | - | chr8_1:50960869-50960888 | None:intergenic | 25.0% |
| !!! | TTCATTTAGACTTTGTTGTT+AGG | - | chr8_1:50960870-50960889 | None:intergenic | 25.0% |
| !!! | TATTTTGAGTATCAATTGCA+TGG | - | chr8_1:50960903-50960922 | None:intergenic | 25.0% |
| ! | ATGCAATTGATACTCAAAAT+AGG | + | chr8_1:50960902-50960921 | Msa1199100:intron | 25.0% |
| !! | TGTGCATATTTTGCAAATTT+TGG | + | chr8_1:50961037-50961056 | Msa1199100:intron | 25.0% |
| ! | CTGACAATGTGTTTATAAAT+GGG | + | chr8_1:50960539-50960558 | Msa1199100:intron | 25.0% |
| ! | TGACAATGTGTTTATAAATG+GGG | + | chr8_1:50960540-50960559 | Msa1199100:intron | 25.0% |
| !! | CTATCAGGTTATACATTTTT+AGG | + | chr8_1:50960648-50960667 | Msa1199100:intron | 25.0% |
| ! | GTTTGATATTGTAAAACGTA+AGG | + | chr8_1:50960676-50960695 | Msa1199100:intron | 25.0% |
| !!! | TCATTTAGACTTTGTTGTTA+GGG | - | chr8_1:50960869-50960888 | None:intergenic | 25.0% |
| !!! | TTCATTTAGACTTTGTTGTT+AGG | - | chr8_1:50960870-50960889 | None:intergenic | 25.0% |
| !!! | TATTTTGAGTATCAATTGCA+TGG | - | chr8_1:50960903-50960922 | None:intergenic | 25.0% |
| ! | ATGCAATTGATACTCAAAAT+AGG | + | chr8_1:50960902-50960921 | Msa1199100:intron | 25.0% |
| !! | TGTGCATATTTTGCAAATTT+TGG | + | chr8_1:50961037-50961056 | Msa1199100:intron | 25.0% |
| !! | TGTGTTAATTTTGGAAAGTG+AGG | + | chr8_1:50960108-50960127 | Msa1199100:CDS | 30.0% |
| !! | ATCTTAGCTTGTTTAGCAAT+AGG | - | chr8_1:50960301-50960320 | None:intergenic | 30.0% |
| CCATTTATAAACACATTGTC+AGG | - | chr8_1:50960541-50960560 | None:intergenic | 30.0% | |
| CCTGACAATGTGTTTATAAA+TGG | + | chr8_1:50960538-50960557 | Msa1199100:intron | 30.0% | |
| GACAATGTGTTTATAAATGG+GGG | + | chr8_1:50960541-50960560 | Msa1199100:intron | 30.0% | |
| AAAAATCGTGGTTACAAAAC+CGG | - | chr8_1:50960585-50960604 | None:intergenic | 30.0% | |
| !! | TGTAACCACGATTTTTAAGA+TGG | + | chr8_1:50960589-50960608 | Msa1199100:intron | 30.0% |
| TGATACCATCTTAAAAATCG+TGG | - | chr8_1:50960597-50960616 | None:intergenic | 30.0% | |
| AAAATGTATAACCTGATAGC+AGG | - | chr8_1:50960647-50960666 | None:intergenic | 30.0% | |
| ! | AGATGTTTTCAAAACTAAGG+TGG | - | chr8_1:50960741-50960760 | None:intergenic | 30.0% |
| ! | GAAACTTTGTTTAGAGATTG+TGG | + | chr8_1:50960823-50960842 | Msa1199100:intron | 30.0% |
| AACTAGATGACATCTTCTAT+TGG | + | chr8_1:50960984-50961003 | Msa1199100:intron | 30.0% | |
| GACATAAAACTGAAGCAAAA+AGG | + | chr8_1:50961064-50961083 | Msa1199100:intron | 30.0% | |
| ! | CGTATATTATTTTCCTGCTT+TGG | - | chr8_1:50961231-50961250 | None:intergenic | 30.0% |
| !! | TGTGTTAATTTTGGAAAGTG+AGG | + | chr8_1:50960108-50960127 | Msa1199100:CDS | 30.0% |
| !! | ATCTTAGCTTGTTTAGCAAT+AGG | - | chr8_1:50960301-50960320 | None:intergenic | 30.0% |
| CCATTTATAAACACATTGTC+AGG | - | chr8_1:50960541-50960560 | None:intergenic | 30.0% | |
| CCTGACAATGTGTTTATAAA+TGG | + | chr8_1:50960538-50960557 | Msa1199100:intron | 30.0% | |
| GACAATGTGTTTATAAATGG+GGG | + | chr8_1:50960541-50960560 | Msa1199100:intron | 30.0% | |
| AAAAATCGTGGTTACAAAAC+CGG | - | chr8_1:50960585-50960604 | None:intergenic | 30.0% | |
| !! | TGTAACCACGATTTTTAAGA+TGG | + | chr8_1:50960589-50960608 | Msa1199100:intron | 30.0% |
| TGATACCATCTTAAAAATCG+TGG | - | chr8_1:50960597-50960616 | None:intergenic | 30.0% | |
| AAAATGTATAACCTGATAGC+AGG | - | chr8_1:50960647-50960666 | None:intergenic | 30.0% | |
| ! | AGATGTTTTCAAAACTAAGG+TGG | - | chr8_1:50960741-50960760 | None:intergenic | 30.0% |
| ! | GAAACTTTGTTTAGAGATTG+TGG | + | chr8_1:50960823-50960842 | Msa1199100:intron | 30.0% |
| AACTAGATGACATCTTCTAT+TGG | + | chr8_1:50960984-50961003 | Msa1199100:intron | 30.0% | |
| GACATAAAACTGAAGCAAAA+AGG | + | chr8_1:50961064-50961083 | Msa1199100:intron | 30.0% | |
| ! | CGTATATTATTTTCCTGCTT+TGG | - | chr8_1:50961231-50961250 | None:intergenic | 30.0% |
| ! | GGCATCAAGTGTGTTAATTT+TGG | + | chr8_1:50960099-50960118 | Msa1199100:CDS | 35.0% |
| AGAACAGAACAAAGACATCT+TGG | - | chr8_1:50960271-50960290 | None:intergenic | 35.0% | |
| TTCCTAAGAGATGCAACATT+AGG | + | chr8_1:50960344-50960363 | Msa1199100:CDS | 35.0% | |
| TTCCTAATGTTGCATCTCTT+AGG | - | chr8_1:50960349-50960368 | None:intergenic | 35.0% | |
| AATGTCGATGCTACAATCAT+CGG | - | chr8_1:50960712-50960731 | None:intergenic | 35.0% | |
| TTGTTTAGAGATTGTGGAAG+AGG | + | chr8_1:50960829-50960848 | Msa1199100:intron | 35.0% | |
| CTGAAGCAAAAAGGAGTTTA+TGG | + | chr8_1:50961073-50961092 | Msa1199100:intron | 35.0% | |
| !! | ATTTTCCTGCTTTGGTTTCA+AGG | - | chr8_1:50961223-50961242 | None:intergenic | 35.0% |
| ! | GGCATCAAGTGTGTTAATTT+TGG | + | chr8_1:50960099-50960118 | Msa1199100:CDS | 35.0% |
| AGAACAGAACAAAGACATCT+TGG | - | chr8_1:50960271-50960290 | None:intergenic | 35.0% | |
| TTCCTAAGAGATGCAACATT+AGG | + | chr8_1:50960344-50960363 | Msa1199100:CDS | 35.0% | |
| TTCCTAATGTTGCATCTCTT+AGG | - | chr8_1:50960349-50960368 | None:intergenic | 35.0% | |
| AATGTCGATGCTACAATCAT+CGG | - | chr8_1:50960712-50960731 | None:intergenic | 35.0% | |
| TTGTTTAGAGATTGTGGAAG+AGG | + | chr8_1:50960829-50960848 | Msa1199100:intron | 35.0% | |
| CTGAAGCAAAAAGGAGTTTA+TGG | + | chr8_1:50961073-50961092 | Msa1199100:intron | 35.0% | |
| !! | ATTTTCCTGCTTTGGTTTCA+AGG | - | chr8_1:50961223-50961242 | None:intergenic | 35.0% |
| AAGAACTTTCCTTGCAACAG+TGG | + | chr8_1:50960063-50960082 | Msa1199100:CDS | 40.0% | |
| ! | AACAGTGGTGATGTTTCTGT+TGG | + | chr8_1:50960078-50960097 | Msa1199100:CDS | 40.0% |
| AATGTGGAAGGACACCAATT+GGG | + | chr8_1:50960140-50960159 | Msa1199100:CDS | 40.0% | |
| ! | AGCTAGTCTAAGTCCATGTT+TGG | + | chr8_1:50960171-50960190 | Msa1199100:CDS | 40.0% |
| ! | GCTAGTCTAAGTCCATGTTT+GGG | + | chr8_1:50960172-50960191 | Msa1199100:CDS | 40.0% |
| GACTCTTAACACGCACATTA+AGG | - | chr8_1:50960498-50960517 | None:intergenic | 40.0% | |
| ATGTATAACCTGATAGCAGG+TGG | - | chr8_1:50960644-50960663 | None:intergenic | 40.0% | |
| TATGTTCTGCTTGTGTCAAG+TGG | - | chr8_1:50961017-50961036 | None:intergenic | 40.0% | |
| AAGAACTTTCCTTGCAACAG+TGG | + | chr8_1:50960063-50960082 | Msa1199100:CDS | 40.0% | |
| ! | AACAGTGGTGATGTTTCTGT+TGG | + | chr8_1:50960078-50960097 | Msa1199100:CDS | 40.0% |
| AATGTGGAAGGACACCAATT+GGG | + | chr8_1:50960140-50960159 | Msa1199100:CDS | 40.0% | |
| ! | AGCTAGTCTAAGTCCATGTT+TGG | + | chr8_1:50960171-50960190 | Msa1199100:CDS | 40.0% |
| ! | GCTAGTCTAAGTCCATGTTT+GGG | + | chr8_1:50960172-50960191 | Msa1199100:CDS | 40.0% |
| GACTCTTAACACGCACATTA+AGG | - | chr8_1:50960498-50960517 | None:intergenic | 40.0% | |
| ATGTATAACCTGATAGCAGG+TGG | - | chr8_1:50960644-50960663 | None:intergenic | 40.0% | |
| TATGTTCTGCTTGTGTCAAG+TGG | - | chr8_1:50961017-50961036 | None:intergenic | 40.0% | |
| GAAACATCACCACTGTTGCA+AGG | - | chr8_1:50960075-50960094 | None:intergenic | 45.0% | |
| !! | ATTTTGGAAAGTGAGGCAGC+TGG | + | chr8_1:50960115-50960134 | Msa1199100:CDS | 45.0% |
| GAATGTGGAAGGACACCAAT+TGG | + | chr8_1:50960139-50960158 | Msa1199100:CDS | 45.0% | |
| TTACGTACAGCACCCAAACA+TGG | - | chr8_1:50960187-50960206 | None:intergenic | 45.0% | |
| ! | TGGGTGCTGTACGTAATGTT+AGG | + | chr8_1:50960191-50960210 | Msa1199100:intron | 45.0% |
| ! | GGGTGCTGTACGTAATGTTA+GGG | + | chr8_1:50960192-50960211 | Msa1199100:intron | 45.0% |
| ACTCTAGCACAACAAACTGG+TGG | - | chr8_1:50960226-50960245 | None:intergenic | 45.0% | |
| CCAACTCTAGCACAACAAAC+TGG | - | chr8_1:50960229-50960248 | None:intergenic | 45.0% | |
| !! | CCAGTTTGTTGTGCTAGAGT+TGG | + | chr8_1:50960226-50960245 | Msa1199100:CDS | 45.0% |
| GGAACAGTGATAGCAATAGC+AGG | - | chr8_1:50960328-50960347 | None:intergenic | 45.0% | |
| CACATTTCTTTCCAGCAGGT+CGG | - | chr8_1:50960372-50960391 | None:intergenic | 45.0% | |
| CTTCCACATTTCTTTCCAGC+AGG | - | chr8_1:50960376-50960395 | None:intergenic | 45.0% | |
| TTAAGAGTCCCACCTCAGAT+AGG | + | chr8_1:50960509-50960528 | Msa1199100:intron | 45.0% | |
| ! | GGTTACAAAACCGGCTTAAG+AGG | - | chr8_1:50960576-50960595 | None:intergenic | 45.0% |
| CACTTCCTTGAAACCAAAGC+AGG | + | chr8_1:50961215-50961234 | Msa1199100:exon | 45.0% | |
| GAAACATCACCACTGTTGCA+AGG | - | chr8_1:50960075-50960094 | None:intergenic | 45.0% | |
| !! | ATTTTGGAAAGTGAGGCAGC+TGG | + | chr8_1:50960115-50960134 | Msa1199100:CDS | 45.0% |
| GAATGTGGAAGGACACCAAT+TGG | + | chr8_1:50960139-50960158 | Msa1199100:CDS | 45.0% | |
| TTACGTACAGCACCCAAACA+TGG | - | chr8_1:50960187-50960206 | None:intergenic | 45.0% | |
| ! | TGGGTGCTGTACGTAATGTT+AGG | + | chr8_1:50960191-50960210 | Msa1199100:intron | 45.0% |
| ! | GGGTGCTGTACGTAATGTTA+GGG | + | chr8_1:50960192-50960211 | Msa1199100:intron | 45.0% |
| ACTCTAGCACAACAAACTGG+TGG | - | chr8_1:50960226-50960245 | None:intergenic | 45.0% | |
| CCAACTCTAGCACAACAAAC+TGG | - | chr8_1:50960229-50960248 | None:intergenic | 45.0% | |
| !! | CCAGTTTGTTGTGCTAGAGT+TGG | + | chr8_1:50960226-50960245 | Msa1199100:CDS | 45.0% |
| GGAACAGTGATAGCAATAGC+AGG | - | chr8_1:50960328-50960347 | None:intergenic | 45.0% | |
| CACATTTCTTTCCAGCAGGT+CGG | - | chr8_1:50960372-50960391 | None:intergenic | 45.0% | |
| CTTCCACATTTCTTTCCAGC+AGG | - | chr8_1:50960376-50960395 | None:intergenic | 45.0% | |
| TTAAGAGTCCCACCTCAGAT+AGG | + | chr8_1:50960509-50960528 | Msa1199100:intron | 45.0% | |
| ! | GGTTACAAAACCGGCTTAAG+AGG | - | chr8_1:50960576-50960595 | None:intergenic | 45.0% |
| CACTTCCTTGAAACCAAAGC+AGG | + | chr8_1:50961215-50961234 | Msa1199100:exon | 45.0% | |
| AACATTAGGAACCGACCTGC+TGG | + | chr8_1:50960358-50960377 | Msa1199100:CDS | 50.0% | |
| CGACCTGCTGGAAAGAAATG+TGG | + | chr8_1:50960370-50960389 | Msa1199100:CDS | 50.0% | |
| GTCCCACCTCAGATAGGATA+AGG | + | chr8_1:50960515-50960534 | Msa1199100:intron | 50.0% | |
| ! | GGCCTTATCCTATCTGAGGT+GGG | - | chr8_1:50960520-50960539 | None:intergenic | 50.0% |
| ! | AGGCCTTATCCTATCTGAGG+TGG | - | chr8_1:50960521-50960540 | None:intergenic | 50.0% |
| ! | GTCAGGCCTTATCCTATCTG+AGG | - | chr8_1:50960524-50960543 | None:intergenic | 50.0% |
| GCAATCCTCACCTCTTAAGC+CGG | + | chr8_1:50960563-50960582 | Msa1199100:intron | 50.0% | |
| ! | CAAAACCGGCTTAAGAGGTG+AGG | - | chr8_1:50960571-50960590 | None:intergenic | 50.0% |
| !! | TGCAATTTCGGGGGGGTATT+TGG | - | chr8_1:50961303-50961322 | None:intergenic | 50.0% |
| AATACCCCCCCGAAATTGCA+AGG | + | chr8_1:50961303-50961322 | Msa1199100:three_prime_UTR | 50.0% | |
| AACATTAGGAACCGACCTGC+TGG | + | chr8_1:50960358-50960377 | Msa1199100:CDS | 50.0% | |
| CGACCTGCTGGAAAGAAATG+TGG | + | chr8_1:50960370-50960389 | Msa1199100:CDS | 50.0% | |
| GTCCCACCTCAGATAGGATA+AGG | + | chr8_1:50960515-50960534 | Msa1199100:intron | 50.0% | |
| ! | GGCCTTATCCTATCTGAGGT+GGG | - | chr8_1:50960520-50960539 | None:intergenic | 50.0% |
| ! | AGGCCTTATCCTATCTGAGG+TGG | - | chr8_1:50960521-50960540 | None:intergenic | 50.0% |
| ! | GTCAGGCCTTATCCTATCTG+AGG | - | chr8_1:50960524-50960543 | None:intergenic | 50.0% |
| GCAATCCTCACCTCTTAAGC+CGG | + | chr8_1:50960563-50960582 | Msa1199100:intron | 50.0% | |
| ! | CAAAACCGGCTTAAGAGGTG+AGG | - | chr8_1:50960571-50960590 | None:intergenic | 50.0% |
| !! | TGCAATTTCGGGGGGGTATT+TGG | - | chr8_1:50961303-50961322 | None:intergenic | 50.0% |
| AATACCCCCCCGAAATTGCA+AGG | + | chr8_1:50961303-50961322 | Msa1199100:three_prime_UTR | 50.0% | |
| AGTGAGGCAGCTGGTGAATG+TGG | + | chr8_1:50960124-50960143 | Msa1199100:CDS | 55.0% | |
| AGGCAGCTGGTGAATGTGGA+AGG | + | chr8_1:50960128-50960147 | Msa1199100:CDS | 55.0% | |
| CTAGCTGCTGCTGACCCAAT+TGG | - | chr8_1:50960157-50960176 | None:intergenic | 55.0% | |
| AGCCTCCTCCAAGATCCGTT+GGG | + | chr8_1:50960618-50960637 | Msa1199100:intron | 55.0% | |
| AGTGAGGCAGCTGGTGAATG+TGG | + | chr8_1:50960124-50960143 | Msa1199100:CDS | 55.0% | |
| AGGCAGCTGGTGAATGTGGA+AGG | + | chr8_1:50960128-50960147 | Msa1199100:CDS | 55.0% | |
| CTAGCTGCTGCTGACCCAAT+TGG | - | chr8_1:50960157-50960176 | None:intergenic | 55.0% | |
| AGCCTCCTCCAAGATCCGTT+GGG | + | chr8_1:50960618-50960637 | Msa1199100:intron | 55.0% | |
| GAGCCTCCTCCAAGATCCGT+TGG | + | chr8_1:50960617-50960636 | Msa1199100:intron | 60.0% | |
| CCTGATAGCAGGTGGCCCAA+CGG | - | chr8_1:50960636-50960655 | None:intergenic | 60.0% | |
| GAGCCTCCTCCAAGATCCGT+TGG | + | chr8_1:50960617-50960636 | Msa1199100:intron | 60.0% | |
| CCTGATAGCAGGTGGCCCAA+CGG | - | chr8_1:50960636-50960655 | None:intergenic | 60.0% | |
| GGCCCAACGGATCTTGGAGG+AGG | - | chr8_1:50960623-50960642 | None:intergenic | 65.0% | |
| GGTGGCCCAACGGATCTTGG+AGG | - | chr8_1:50960626-50960645 | None:intergenic | 65.0% | |
| GCAGGTGGCCCAACGGATCT+TGG | - | chr8_1:50960629-50960648 | None:intergenic | 65.0% | |
| CCGTTGGGCCACCTGCTATC+AGG | + | chr8_1:50960633-50960652 | Msa1199100:intron | 65.0% | |
| GGCCCAACGGATCTTGGAGG+AGG | - | chr8_1:50960623-50960642 | None:intergenic | 65.0% | |
| GGTGGCCCAACGGATCTTGG+AGG | - | chr8_1:50960626-50960645 | None:intergenic | 65.0% | |
| GCAGGTGGCCCAACGGATCT+TGG | - | chr8_1:50960629-50960648 | None:intergenic | 65.0% | |
| CCGTTGGGCCACCTGCTATC+AGG | + | chr8_1:50960633-50960652 | Msa1199100:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 50960049 | 50961328 | 50960049 | ID=Msa1199100;Name=Msa1199100 |
| chr8_1 | mRNA | 50960049 | 50961328 | 50960049 | ID=Msa1199100-mRNA-1;Parent=Msa1199100;Name=Msa1199100-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.33|1|0|0.33|3|103|114 |
| chr8_1 | exon | 50960049 | 50960202 | 50960049 | ID=Msa1199100-mRNA-1:exon:16087;Parent=Msa1199100-mRNA-1 |
| chr8_1 | exon | 50960221 | 50960394 | 50960221 | ID=Msa1199100-mRNA-1:exon:16088;Parent=Msa1199100-mRNA-1 |
| chr8_1 | exon | 50961209 | 50961328 | 50961209 | ID=Msa1199100-mRNA-1:exon:16089;Parent=Msa1199100-mRNA-1 |
| chr8_1 | CDS | 50960049 | 50960202 | 50960049 | ID=Msa1199100-mRNA-1:cds;Parent=Msa1199100-mRNA-1 |
| chr8_1 | CDS | 50960221 | 50960394 | 50960221 | ID=Msa1199100-mRNA-1:cds;Parent=Msa1199100-mRNA-1 |
| chr8_1 | CDS | 50961209 | 50961225 | 50961209 | ID=Msa1199100-mRNA-1:cds;Parent=Msa1199100-mRNA-1 |
| chr8_1 | three_prime_UTR | 50961226 | 50961328 | 50961226 | ID=Msa1199100-mRNA-1:three_prime_utr;Parent=Msa1199100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
