Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200310 | G7L7V0 | 90.625 | 160 | 4 | 3 | 1 | 149 | 1 | 160 | 1.55e-45 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1036910 | Msa1200310 | 0.802023 | 6.827924e-49 | -8.615850e-47 |
| Msa1200310 | Msa1200320 | 0.829880 | 4.018259e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1200310 | MtrunA17_Chr8g0369831 | 90.625 | 160 | 4 | 3 | 1 | 149 | 1 | 160 | 2.99e-49 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 103 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCTGCTGCCGCTGCTTA+TGG | 0.185365 | 8_1:-52889000 | Msa1200310:CDS |
| TATGAACTGAAGTTTGTTAA+TGG | 0.188949 | 8_1:-52888477 | Msa1200310:three_prime_UTR |
| TAAATAAACTATACTTCTTA+TGG | 0.263751 | 8_1:-52888709 | Msa1200310:three_prime_UTR |
| GGTATTGGAGGAATGCTTGC+TGG | 0.278390 | 8_1:-52889030 | Msa1200310:CDS |
| TGGTGTATGTTCATCATATT+AGG | 0.319959 | 8_1:-52888689 | Msa1200310:three_prime_UTR |
| TTGAGCAAGTCTTGAGGTAT+TGG | 0.326848 | 8_1:-52888610 | Msa1200310:three_prime_UTR |
| ATGAGGATCAAAACACATTA+AGG | 0.331729 | 8_1:+52888546 | None:intergenic |
| TTTAATTTGGTTTGAAAGAT+GGG | 0.350902 | 8_1:-52890424 | Msa1200310:exon |
| AAGTTCAAGCATGGAAAGTT+TGG | 0.362341 | 8_1:-52888826 | Msa1200310:CDS |
| TCTCATGGACATGGCGGTAT+TGG | 0.367332 | 8_1:-52889045 | Msa1200310:CDS |
| GAAATTGAGAAATTGAGAAT+TGG | 0.373071 | 8_1:+52890840 | None:intergenic |
| TACCCACCTGCTGGTTATCC+TGG | 0.395132 | 8_1:-52890196 | Msa1200310:CDS |
| GTATTGGAGGAATGCTTGCT+GGG | 0.419908 | 8_1:-52889029 | Msa1200310:CDS |
| ATGATGAATCTTCTGACAAA+GGG | 0.447450 | 8_1:-52890384 | Msa1200310:CDS |
| CACGGCGCTCACGGTTATCC+AGG | 0.457573 | 8_1:-52888952 | Msa1200310:CDS |
| CATGGAAAGTTTGGCAAACA+TGG | 0.462196 | 8_1:-52888817 | Msa1200310:CDS |
| TGAGAAATTGAGAATTGGAA+TGG | 0.469473 | 8_1:+52890845 | None:intergenic |
| CATCTTGCTCAAGGTATAGC+TGG | 0.471682 | 8_1:-52890352 | Msa1200310:CDS |
| GAATGGAAGAAGAGAGAAAG+AGG | 0.474270 | 8_1:+52890862 | None:intergenic |
| GGTTATCCTGGTGCACATGC+TGG | 0.475046 | 8_1:-52890184 | Msa1200310:CDS |
| TTGAAAGATGGGTGGTGGTA+AGG | 0.476340 | 8_1:-52890413 | Msa1200310:exon |
| GCTGCTGCACATGGTGGACA+TGG | 0.487101 | 8_1:-52890328 | Msa1200310:CDS |
| TGGCAGTCACATGGGTCACA+TGG | 0.491218 | 8_1:-52888899 | Msa1200310:CDS |
| CATGGTGCTCACGGCGCTCA+CGG | 0.491903 | 8_1:-52888961 | Msa1200310:CDS |
| CATGGACATGGCGGTATTGG+AGG | 0.493065 | 8_1:-52889042 | Msa1200310:CDS |
| CAACAAGGTTATCCACCTGC+TGG | 0.498616 | 8_1:-52890271 | Msa1200310:CDS |
| GTGAGCGCCGTGAGCACCAT+GGG | 0.499573 | 8_1:+52888963 | None:intergenic |
| GGTGGGTACCCTTGTTGTGG+AGG | 0.509504 | 8_1:+52890211 | None:intergenic |
| TGTGATCATGTAAAACTTAG+CGG | 0.509561 | 8_1:-52888440 | Msa1200310:three_prime_UTR |
| CATGTCTCCCATGGTGCTCA+CGG | 0.510395 | 8_1:-52888970 | Msa1200310:CDS |
| AATTTCTTTCTCTTATTCGA+AGG | 0.513291 | 8_1:-52890823 | Msa1200310:intron |
| TTGTTATCACCAGGGTCTCA+TGG | 0.517186 | 8_1:-52889060 | Msa1200310:intron |
| TTATCCAGGTGGCTACCCAC+AGG | 0.520728 | 8_1:-52888938 | Msa1200310:CDS |
| AAACATGGTGGAGGCAAGCA+CGG | 0.522918 | 8_1:-52888802 | Msa1200310:CDS |
| AACATGGTGGAGGCAAGCAC+GGG | 0.529522 | 8_1:-52888801 | Msa1200310:CDS |
| TGCACATGGTGGCAGTCACA+TGG | 0.530628 | 8_1:-52888908 | Msa1200310:CDS |
| TGTTGACCAGCATGTGCACC+AGG | 0.531075 | 8_1:+52890178 | None:intergenic |
| GCAGGTGGGTACCCTTGTTG+TGG | 0.532640 | 8_1:+52890208 | None:intergenic |
| TTGGTTTGAAAGATGGGTGG+TGG | 0.539015 | 8_1:-52890418 | Msa1200310:exon |
| GTGGGTACCCTTGTTGTGGA+GGG | 0.542748 | 8_1:+52890212 | None:intergenic |
| CATGATGAATCTTCTGACAA+AGG | 0.545311 | 8_1:-52890385 | Msa1200310:CDS |
| GGCACTCACCATGTCTCCCA+TGG | 0.551274 | 8_1:-52888979 | Msa1200310:CDS |
| GCAAGCACGGGTTCAAGAAG+TGG | 0.551612 | 8_1:-52888789 | Msa1200310:CDS |
| CGTGAGCACCATGGGAGACA+TGG | 0.552868 | 8_1:+52888971 | None:intergenic |
| CAACAAGGGTACCCACCTGC+TGG | 0.553618 | 8_1:-52890205 | Msa1200310:CDS |
| ATAGCTGGTGCTGCTGCACA+TGG | 0.559628 | 8_1:-52890337 | Msa1200310:CDS |
| ATAGTATAGCGTAAATTGAG+TGG | 0.560161 | 8_1:+52890906 | None:intergenic |
| CACATGGGTCACATGGGCCA+CGG | 0.567570 | 8_1:-52888892 | Msa1200310:CDS |
| GTTCAATGAAACATGTAATG+AGG | 0.569550 | 8_1:+52888529 | None:intergenic |
| ACATCAATTTGTCAGTACTT+CGG | 0.569792 | 8_1:+52888576 | None:intergenic |
| AAGCAGCATGGCAAGTTCAA+AGG | 0.570799 | 8_1:-52888862 | Msa1200310:CDS |
| GGAGGACATGGTTACCCACC+TGG | 0.572769 | 8_1:-52890307 | Msa1200310:CDS |
| AATGGAAGAAGAGAGAAAGA+GGG | 0.579029 | 8_1:+52890863 | None:intergenic |
| GGCAGTCACATGGGTCACAT+GGG | 0.584120 | 8_1:-52888898 | Msa1200310:CDS |
| CACGGAAAATTCAAGCAGCA+TGG | 0.585267 | 8_1:-52888874 | Msa1200310:CDS |
| GCAGGTGGATAACCTTGTTG+TGG | 0.585819 | 8_1:+52890274 | None:intergenic |
| TATTGGAGGAATGCTTGCTG+GGG | 0.586380 | 8_1:-52889028 | Msa1200310:CDS |
| AAGCATGGCAAGTTCAAGCA+TGG | 0.588988 | 8_1:-52888835 | Msa1200310:CDS |
| CCATGTGCATATCCGCCCTG+TGG | 0.589050 | 8_1:+52888922 | None:intergenic |
| TGTTGTGGAGGGTATCCACT+AGG | 0.589198 | 8_1:+52890223 | None:intergenic |
| AACAAGGTTATCCACCTGCT+GGG | 0.589294 | 8_1:-52890270 | Msa1200310:CDS |
| TGTGGAGGGTATGCACCAGG+TGG | 0.591090 | 8_1:+52890292 | None:intergenic |
| AAGTTCAAAGGAGGAAAGCA+TGG | 0.591120 | 8_1:-52888850 | Msa1200310:CDS |
| CGTGAGCGCCGTGAGCACCA+TGG | 0.592595 | 8_1:+52888962 | None:intergenic |
| CATGTGCATATCCGCCCTGT+GGG | 0.593675 | 8_1:+52888923 | None:intergenic |
| CTAGGAGGATAACCTTGTTG+TGG | 0.595828 | 8_1:+52890241 | None:intergenic |
| TATCCAGGTGGCTACCCACA+GGG | 0.596964 | 8_1:-52888937 | Msa1200310:CDS |
| GGTGGATAACCTTGTTGTGG+AGG | 0.597323 | 8_1:+52890277 | None:intergenic |
| GCACATGCTGGTCAACATGC+TGG | 0.600903 | 8_1:-52890172 | Msa1200310:intron |
| TGTTGTGGAGGATACCCAGC+AGG | 0.606724 | 8_1:+52890256 | None:intergenic |
| TCACCAGGGTCTCATGGACA+TGG | 0.607441 | 8_1:-52889054 | Msa1200310:intron |
| GGAGGATAACCTTGTTGTGG+AGG | 0.608110 | 8_1:+52890244 | None:intergenic |
| GTGGATAACCTTGTTGTGGA+GGG | 0.609108 | 8_1:+52890278 | None:intergenic |
| ATACCTCAAGACTTGCTCAA+AGG | 0.609822 | 8_1:+52888613 | None:intergenic |
| TGTGCACCAGGATAACCAGC+AGG | 0.610864 | 8_1:+52890190 | None:intergenic |
| AAGTTTGGCAAACATGGTGG+AGG | 0.614031 | 8_1:-52888811 | Msa1200310:CDS |
| CATGGTGGACATGGAGGACA+TGG | 0.622620 | 8_1:-52890319 | Msa1200310:CDS |
| AGTGGATACCCTCCACAACA+AGG | 0.626121 | 8_1:-52890220 | Msa1200310:CDS |
| TGTTGTGGAGGGTATGCACC+AGG | 0.628769 | 8_1:+52890289 | None:intergenic |
| GCACATGGTGGCAGTCACAT+GGG | 0.634666 | 8_1:-52888907 | Msa1200310:CDS |
| GATCCTTTGAGCAAGTCTTG+AGG | 0.639257 | 8_1:-52888616 | Msa1200310:three_prime_UTR |
| GGAAAGTTTGGCAAACATGG+TGG | 0.640897 | 8_1:-52888814 | Msa1200310:CDS |
| CAGCATGGCAAGTTCAAAGG+AGG | 0.642465 | 8_1:-52888859 | Msa1200310:CDS |
| GCACCAGGATAACCAGCAGG+TGG | 0.647935 | 8_1:+52890193 | None:intergenic |
| AATTTGGTTTGAAAGATGGG+TGG | 0.648614 | 8_1:-52890421 | Msa1200310:exon |
| CCACAGGGCGGATATGCACA+TGG | 0.652112 | 8_1:-52888922 | Msa1200310:CDS |
| CAACAAGGTTATCCTCCTAG+TGG | 0.656995 | 8_1:-52890238 | Msa1200310:CDS |
| ATTGGAGGAATGCTTGCTGG+GGG | 0.658337 | 8_1:-52889027 | Msa1200310:CDS |
| GCTGGGTATCCTCCACAACA+AGG | 0.662017 | 8_1:-52890253 | Msa1200310:CDS |
| TGTGGAGGATACCCAGCAGG+TGG | 0.662121 | 8_1:+52890259 | None:intergenic |
| GGTGCATACCCTCCACAACA+AGG | 0.662307 | 8_1:-52890286 | Msa1200310:CDS |
| GTGGAGGGTATGCACCAGGT+GGG | 0.665437 | 8_1:+52890293 | None:intergenic |
| GCTGGTGCTGCTGCACATGG+TGG | 0.665716 | 8_1:-52890334 | Msa1200310:CDS |
| CACCAGGATAACCAGCAGGT+GGG | 0.668962 | 8_1:+52890194 | None:intergenic |
| GGCGCTCACGGTTATCCAGG+TGG | 0.672720 | 8_1:-52888949 | Msa1200310:CDS |
| ATGGTGAGTGCCATAAGCAG+CGG | 0.686078 | 8_1:+52888990 | None:intergenic |
| GTGGATACCCTCCACAACAA+GGG | 0.686186 | 8_1:-52890219 | Msa1200310:CDS |
| TGTGGAGGGTATCCACTAGG+AGG | 0.696214 | 8_1:+52890226 | None:intergenic |
| TGATGAATCTTCTGACAAAG+GGG | 0.700396 | 8_1:-52890383 | Msa1200310:CDS |
| GCTGCACATGGTGGACATGG+AGG | 0.714704 | 8_1:-52890325 | Msa1200310:CDS |
| CAGGGCGGATATGCACATGG+TGG | 0.738005 | 8_1:-52888919 | Msa1200310:CDS |
| CCAGGGTCTCATGGACATGG+CGG | 0.758862 | 8_1:-52889051 | Msa1200310:intron |
| CCAGGTGGCTACCCACAGGG+CGG | 0.762549 | 8_1:-52888934 | Msa1200310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAGTAAAAAAACAATA+GGG | + | chr8_1:52888528-52888547 | None:intergenic | 15.0% |
| !! | ATAATGAGTAAAAAAACAAT+AGG | + | chr8_1:52888529-52888548 | None:intergenic | 15.0% |
| !!! | TTGTAACAATTTGTAATTTT+TGG | - | chr8_1:52888857-52888876 | Msa1200310:CDS | 15.0% |
| !!! | AAATTGATTTTCTATTGTTA+TGG | - | chr8_1:52889183-52889202 | Msa1200310:intron | 15.0% |
| !! | TCGATAATAATTTGAAAAAA+TGG | - | chr8_1:52889272-52889291 | Msa1200310:intron | 15.0% |
| !!! | AAAAAATTATCGAATTTGTT+AGG | - | chr8_1:52889557-52889576 | Msa1200310:intron | 15.0% |
| !! | TAAATAAACTATACTTCTTA+TGG | - | chr8_1:52890610-52890629 | Msa1200310:intron | 15.0% |
| !! | AAGAAAAAAAACAAAAACAA+GGG | + | chr8_1:52890657-52890676 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAAACAAAAACA+AGG | + | chr8_1:52890658-52890677 | None:intergenic | 15.0% |
| !!! | TTTTAATTTGGTTTGAAAGA+TGG | - | chr8_1:52888894-52888913 | Msa1200310:CDS | 20.0% |
| !!! | TTTAATTTGGTTTGAAAGAT+GGG | - | chr8_1:52888895-52888914 | Msa1200310:CDS | 20.0% |
| !! | CAATAGAAAATCAATTTGAA+AGG | + | chr8_1:52889180-52889199 | None:intergenic | 20.0% |
| !! | CTAAAAACCTTAACAAAATA+AGG | + | chr8_1:52889618-52889637 | None:intergenic | 20.0% |
| !!! | TAAGGTTTTTAGTGAAATTA+TGG | - | chr8_1:52889626-52889645 | Msa1200310:intron | 20.0% |
| !!! | TCAGTTTATGAAATCTTTTT+AGG | + | chr8_1:52890048-52890067 | None:intergenic | 20.0% |
| ! | GAAATTGAGAAATTGAGAAT+TGG | + | chr8_1:52888482-52888501 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTCTTATTCGA+AGG | - | chr8_1:52888496-52888515 | Msa1200310:three_prime_UTR | 25.0% |
| ! | AAACAAAGAAACACAAAACA+TGG | + | chr8_1:52888821-52888840 | None:intergenic | 25.0% |
| !!! | TTTGTAATTTTTGGATCATC+AGG | - | chr8_1:52888866-52888885 | Msa1200310:CDS | 25.0% |
| !!! | CATCAGGTGTTTTTTTAATT+TGG | - | chr8_1:52888882-52888901 | Msa1200310:CDS | 25.0% |
| ! | TGTAATGATTAGTAACTACA+AGG | + | chr8_1:52889213-52889232 | None:intergenic | 25.0% |
| ! | ATTCAAATATACAAGTTGTC+AGG | + | chr8_1:52889344-52889363 | None:intergenic | 25.0% |
| ! | TAATTCATATGCTTCTAAGT+AGG | + | chr8_1:52889404-52889423 | None:intergenic | 25.0% |
| ! | GTATCATTATATGTGAATTG+TGG | + | chr8_1:52889499-52889518 | None:intergenic | 25.0% |
| !!! | TTATCGAATTTGTTAGGAAA+AGG | - | chr8_1:52889563-52889582 | Msa1200310:intron | 25.0% |
| !!! | TATGAACTGAAGTTTGTTAA+TGG | - | chr8_1:52890842-52890861 | Msa1200310:five_prime_UTR | 25.0% |
| !! | TAAGTTTTACATGATCACAT+AGG | + | chr8_1:52890878-52890897 | None:intergenic | 25.0% |
| ATAGTATAGCGTAAATTGAG+TGG | + | chr8_1:52888416-52888435 | None:intergenic | 30.0% | |
| TGAGAAATTGAGAATTGGAA+TGG | + | chr8_1:52888477-52888496 | None:intergenic | 30.0% | |
| AAGCTAACAATGATGATCAA+TGG | + | chr8_1:52888577-52888596 | None:intergenic | 30.0% | |
| GCATTTGAACAAATTTGTCT+TGG | - | chr8_1:52888772-52888791 | Msa1200310:exon | 30.0% | |
| TGAACAAATTTGTCTTGGAT+TGG | - | chr8_1:52888777-52888796 | Msa1200310:exon | 30.0% | |
| ! | AATTTGTCTTGGATTGGATT+AGG | - | chr8_1:52888783-52888802 | Msa1200310:CDS | 30.0% |
| ! | ATTTGTCTTGGATTGGATTA+GGG | - | chr8_1:52888784-52888803 | Msa1200310:CDS | 30.0% |
| ATGATGAATCTTCTGACAAA+GGG | - | chr8_1:52888935-52888954 | Msa1200310:CDS | 30.0% | |
| ATAAATGTAAGCACGTGTAT+AGG | - | chr8_1:52889300-52889319 | Msa1200310:intron | 30.0% | |
| ATATGTGAATTGTGGTTTCA+CGG | + | chr8_1:52889491-52889510 | None:intergenic | 30.0% | |
| TGATACTTACATACTAATCG+TGG | - | chr8_1:52889513-52889532 | Msa1200310:intron | 30.0% | |
| GATACTTACATACTAATCGT+GGG | - | chr8_1:52889514-52889533 | Msa1200310:intron | 30.0% | |
| TGAAGATTATACAACAGAAC+AGG | - | chr8_1:52889591-52889610 | Msa1200310:intron | 30.0% | |
| !!! | AACAGGTCCTTATTTTGTTA+AGG | - | chr8_1:52889608-52889627 | Msa1200310:intron | 30.0% |
| TCTCTATAAACTACATCAAG+TGG | - | chr8_1:52889712-52889731 | Msa1200310:intron | 30.0% | |
| CTTAAAATGAGTATGCAATG+TGG | - | chr8_1:52889811-52889830 | Msa1200310:intron | 30.0% | |
| CTTAAAAGAAACACTCAATG+CGG | - | chr8_1:52889849-52889868 | Msa1200310:intron | 30.0% | |
| ACGACAAAAAATCAACACAT+TGG | + | chr8_1:52889952-52889971 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTGTCGTGATTTG+TGG | - | chr8_1:52889958-52889977 | Msa1200310:intron | 30.0% |
| CTGAGACTTATTGAATTTGA+TGG | - | chr8_1:52890064-52890083 | Msa1200310:intron | 30.0% | |
| AGACTTATTGAATTTGATGG+TGG | - | chr8_1:52890067-52890086 | Msa1200310:intron | 30.0% | |
| ! | TTAGCAGGTTCAAATGATTT+TGG | + | chr8_1:52890228-52890247 | None:intergenic | 30.0% |
| TGGTGTATGTTCATCATATT+AGG | - | chr8_1:52890630-52890649 | Msa1200310:intron | 30.0% | |
| ACATCAATTTGTCAGTACTT+CGG | + | chr8_1:52890746-52890765 | None:intergenic | 30.0% | |
| ATGAGGATCAAAACACATTA+AGG | + | chr8_1:52890776-52890795 | None:intergenic | 30.0% | |
| GTTCAATGAAACATGTAATG+AGG | + | chr8_1:52890793-52890812 | None:intergenic | 30.0% | |
| TGTGATCATGTAAAACTTAG+CGG | - | chr8_1:52890879-52890898 | Msa1200310:five_prime_UTR | 30.0% | |
| AATGGAAGAAGAGAGAAAGA+GGG | + | chr8_1:52888459-52888478 | None:intergenic | 35.0% | |
| ATGATTTAAGTGTGTCGTGT+CGG | + | chr8_1:52888652-52888671 | None:intergenic | 35.0% | |
| !! | AATTTGGTTTGAAAGATGGG+TGG | - | chr8_1:52888898-52888917 | Msa1200310:CDS | 35.0% |
| CATGATGAATCTTCTGACAA+AGG | - | chr8_1:52888934-52888953 | Msa1200310:CDS | 35.0% | |
| TGATGAATCTTCTGACAAAG+GGG | - | chr8_1:52888936-52888955 | Msa1200310:CDS | 35.0% | |
| !! | GAGTTGATGGCTTGAATATT+TGG | - | chr8_1:52889740-52889759 | Msa1200310:intron | 35.0% |
| ACATAGCCCATTATTCTGAT+AGG | - | chr8_1:52889765-52889784 | Msa1200310:intron | 35.0% | |
| CAGCTACCTATCAGAATAAT+GGG | + | chr8_1:52889774-52889793 | None:intergenic | 35.0% | |
| !!! | TTGTCTCATTGGTGGATTTT+AGG | - | chr8_1:52889989-52890008 | Msa1200310:intron | 35.0% |
| TTAGATTTGTCGATGTCTTC+TGG | - | chr8_1:52890093-52890112 | Msa1200310:intron | 35.0% | |
| ACAACAGTAGAAAACTTAGC+AGG | + | chr8_1:52890243-52890262 | None:intergenic | 35.0% | |
| TTTCTACTGTTGTTATCACC+AGG | - | chr8_1:52890250-52890269 | Msa1200310:CDS | 35.0% | |
| TTCTACTGTTGTTATCACCA+GGG | - | chr8_1:52890251-52890270 | Msa1200310:CDS | 35.0% | |
| AAGTTCAAGCATGGAAAGTT+TGG | - | chr8_1:52890493-52890512 | Msa1200310:intron | 35.0% | |
| !!! | GTTTTGCTATTTCAATGCAC+TGG | - | chr8_1:52890681-52890700 | Msa1200310:intron | 35.0% |
| GAATGGAAGAAGAGAGAAAG+AGG | + | chr8_1:52888460-52888479 | None:intergenic | 40.0% | |
| ! | GTGTTTTCACATCTTGCTCA+AGG | - | chr8_1:52888958-52888977 | Msa1200310:CDS | 40.0% |
| TTGCAGCTGCAACAAAAATC+AGG | + | chr8_1:52889367-52889386 | None:intergenic | 40.0% | |
| CGTGGGAGTTAAATTGTAAG+TGG | - | chr8_1:52889531-52889550 | Msa1200310:intron | 40.0% | |
| ! | TGGTGTCAAGTCCTCAATAT+TGG | - | chr8_1:52889646-52889665 | Msa1200310:intron | 40.0% |
| CGAGCAACAAACCAATATTG+AGG | + | chr8_1:52889660-52889679 | None:intergenic | 40.0% | |
| AGCGAGTGACCTAAACTAAT+GGG | + | chr8_1:52889684-52889703 | None:intergenic | 40.0% | |
| AAGCGAGTGACCTAAACTAA+TGG | + | chr8_1:52889685-52889704 | None:intergenic | 40.0% | |
| TCAAGTGGTATCAGAGTTGA+TGG | - | chr8_1:52889727-52889746 | Msa1200310:intron | 40.0% | |
| CCAGCTACCTATCAGAATAA+TGG | + | chr8_1:52889775-52889794 | None:intergenic | 40.0% | |
| CCATTATTCTGATAGGTAGC+TGG | - | chr8_1:52889772-52889791 | Msa1200310:intron | 40.0% | |
| CAATGTGGAGACTCAAACTT+TGG | - | chr8_1:52889826-52889845 | Msa1200310:intron | 40.0% | |
| TGGTTTACTGCTTGTCTCAT+TGG | - | chr8_1:52889978-52889997 | Msa1200310:intron | 40.0% | |
| TTTACTGCTTGTCTCATTGG+TGG | - | chr8_1:52889981-52890000 | Msa1200310:intron | 40.0% | |
| TCAGTTGTTGAGAGTTCCAA+GGG | + | chr8_1:52890017-52890036 | None:intergenic | 40.0% | |
| ATCAGTTGTTGAGAGTTCCA+AGG | + | chr8_1:52890018-52890037 | None:intergenic | 40.0% | |
| AAGTTCAAAGGAGGAAAGCA+TGG | - | chr8_1:52890469-52890488 | Msa1200310:intron | 40.0% | |
| CATGGAAAGTTTGGCAAACA+TGG | - | chr8_1:52890502-52890521 | Msa1200310:intron | 40.0% | |
| ! | ATACCTCAAGACTTGCTCAA+AGG | + | chr8_1:52890709-52890728 | None:intergenic | 40.0% |
| TTGAGCAAGTCTTGAGGTAT+TGG | - | chr8_1:52890709-52890728 | Msa1200310:intron | 40.0% | |
| GAGTGGAGACAAAAAGAGAG+AGG | + | chr8_1:52888399-52888418 | None:intergenic | 45.0% | |
| TCTGACACACATCTGATCGA+AGG | - | chr8_1:52888608-52888627 | Msa1200310:three_prime_UTR | 45.0% | |
| ! | TTGGTTTGAAAGATGGGTGG+TGG | - | chr8_1:52888901-52888920 | Msa1200310:CDS | 45.0% |
| ! | TTGAAAGATGGGTGGTGGTA+AGG | - | chr8_1:52888906-52888925 | Msa1200310:CDS | 45.0% |
| CATCTTGCTCAAGGTATAGC+TGG | - | chr8_1:52888967-52888986 | Msa1200310:CDS | 45.0% | |
| ! | GTGGATAACCTTGTTGTGGA+GGG | + | chr8_1:52889044-52889063 | None:intergenic | 45.0% |
| AACAAGGTTATCCACCTGCT+GGG | - | chr8_1:52889049-52889068 | Msa1200310:CDS | 45.0% | |
| CTAGGAGGATAACCTTGTTG+TGG | + | chr8_1:52889081-52889100 | None:intergenic | 45.0% | |
| CAACAAGGTTATCCTCCTAG+TGG | - | chr8_1:52889081-52889100 | Msa1200310:intron | 45.0% | |
| AAACACTCACACACGTGCAT+TGG | - | chr8_1:52889240-52889259 | Msa1200310:intron | 45.0% | |
| ! | TTGTGGTTTCACGGCTAGTT+CGG | + | chr8_1:52889482-52889501 | None:intergenic | 45.0% |
| ! | GTTGCTCGTCCCATTAGTTT+AGG | - | chr8_1:52889672-52889691 | Msa1200310:intron | 45.0% |
| TAGCTGGTGACTCGAGTATT+TGG | - | chr8_1:52889788-52889807 | Msa1200310:intron | 45.0% | |
| !! | TCCTGCACATTGGCTTGAAA+TGG | - | chr8_1:52889891-52889910 | Msa1200310:intron | 45.0% |
| TCCATTTCAAGCCAATGTGC+AGG | + | chr8_1:52889895-52889914 | None:intergenic | 45.0% | |
| TTGTCGATGTCTTCTGGTGA+CGG | - | chr8_1:52890099-52890118 | Msa1200310:intron | 45.0% | |
| TTGTTATCACCAGGGTCTCA+TGG | - | chr8_1:52890259-52890278 | Msa1200310:CDS | 45.0% | |
| GTATTGGAGGAATGCTTGCT+GGG | - | chr8_1:52890290-52890309 | Msa1200310:CDS | 45.0% | |
| ! | TATTGGAGGAATGCTTGCTG+GGG | - | chr8_1:52890291-52890310 | Msa1200310:CDS | 45.0% |
| !! | CATGCTGCTTGAATTTTCCG+TGG | + | chr8_1:52890447-52890466 | None:intergenic | 45.0% |
| CACGGAAAATTCAAGCAGCA+TGG | - | chr8_1:52890445-52890464 | Msa1200310:intron | 45.0% | |
| AAGCAGCATGGCAAGTTCAA+AGG | - | chr8_1:52890457-52890476 | Msa1200310:intron | 45.0% | |
| AAGCATGGCAAGTTCAAGCA+TGG | - | chr8_1:52890484-52890503 | Msa1200310:intron | 45.0% | |
| GGAAAGTTTGGCAAACATGG+TGG | - | chr8_1:52890505-52890524 | Msa1200310:intron | 45.0% | |
| AAGTTTGGCAAACATGGTGG+AGG | - | chr8_1:52890508-52890527 | Msa1200310:intron | 45.0% | |
| GATCCTTTGAGCAAGTCTTG+AGG | - | chr8_1:52890703-52890722 | Msa1200310:intron | 45.0% | |
| ! | TAAGTGTGTCGTGTCGGTGT+TGG | + | chr8_1:52888646-52888665 | None:intergenic | 50.0% |
| ! | GGTGGATAACCTTGTTGTGG+AGG | + | chr8_1:52889045-52889064 | None:intergenic | 50.0% |
| GCAGGTGGATAACCTTGTTG+TGG | + | chr8_1:52889048-52889067 | None:intergenic | 50.0% | |
| CAACAAGGTTATCCACCTGC+TGG | - | chr8_1:52889048-52889067 | Msa1200310:CDS | 50.0% | |
| ! | GGAGGATAACCTTGTTGTGG+AGG | + | chr8_1:52889078-52889097 | None:intergenic | 50.0% |
| !! | TGTTGTGGAGGGTATCCACT+AGG | + | chr8_1:52889099-52889118 | None:intergenic | 50.0% |
| AGTGGATACCCTCCACAACA+AGG | - | chr8_1:52889099-52889118 | Msa1200310:intron | 50.0% | |
| GTGGATACCCTCCACAACAA+GGG | - | chr8_1:52889100-52889119 | Msa1200310:intron | 50.0% | |
| ! | GTTTCACGGCTAGTTCGGTA+TGG | + | chr8_1:52889477-52889496 | None:intergenic | 50.0% |
| TCAATGCGGAGACTCCAACT+TGG | - | chr8_1:52889863-52889882 | Msa1200310:intron | 50.0% | |
| !!! | TGGTGGATTTTAGGCTCCCT+TGG | - | chr8_1:52889998-52890017 | Msa1200310:intron | 50.0% |
| TCTCATGGACATGGCGGTAT+TGG | - | chr8_1:52890274-52890293 | Msa1200310:CDS | 50.0% | |
| ! | GGTATTGGAGGAATGCTTGC+TGG | - | chr8_1:52890289-52890308 | Msa1200310:CDS | 50.0% |
| ! | ATTGGAGGAATGCTTGCTGG+GGG | - | chr8_1:52890292-52890311 | Msa1200310:CDS | 50.0% |
| ATGGTGAGTGCCATAAGCAG+CGG | + | chr8_1:52890332-52890351 | None:intergenic | 50.0% | |
| CAGCATGGCAAGTTCAAAGG+AGG | - | chr8_1:52890460-52890479 | Msa1200310:intron | 50.0% | |
| ! | AAACATGGTGGAGGCAAGCA+CGG | - | chr8_1:52890517-52890536 | Msa1200310:intron | 50.0% |
| !! | ATAGCTGGTGCTGCTGCACA+TGG | - | chr8_1:52888982-52889001 | Msa1200310:CDS | 55.0% |
| !! | CATGGTGGACATGGAGGACA+TGG | - | chr8_1:52889000-52889019 | Msa1200310:CDS | 55.0% |
| ! | TGTTGTGGAGGGTATGCACC+AGG | + | chr8_1:52889033-52889052 | None:intergenic | 55.0% |
| GGTGCATACCCTCCACAACA+AGG | - | chr8_1:52889033-52889052 | Msa1200310:CDS | 55.0% | |
| TGTTGTGGAGGATACCCAGC+AGG | + | chr8_1:52889066-52889085 | None:intergenic | 55.0% | |
| GCTGGGTATCCTCCACAACA+AGG | - | chr8_1:52889066-52889085 | Msa1200310:intron | 55.0% | |
| !! | TGTGGAGGGTATCCACTAGG+AGG | + | chr8_1:52889096-52889115 | None:intergenic | 55.0% |
| ! | GTGGGTACCCTTGTTGTGGA+GGG | + | chr8_1:52889110-52889129 | None:intergenic | 55.0% |
| ! | TACCCACCTGCTGGTTATCC+TGG | - | chr8_1:52889123-52889142 | Msa1200310:intron | 55.0% |
| CACCAGGATAACCAGCAGGT+GGG | + | chr8_1:52889128-52889147 | None:intergenic | 55.0% | |
| TGTGCACCAGGATAACCAGC+AGG | + | chr8_1:52889132-52889151 | None:intergenic | 55.0% | |
| GGTTATCCTGGTGCACATGC+TGG | - | chr8_1:52889135-52889154 | Msa1200310:intron | 55.0% | |
| TGTTGACCAGCATGTGCACC+AGG | + | chr8_1:52889144-52889163 | None:intergenic | 55.0% | |
| GCACATGCTGGTCAACATGC+TGG | - | chr8_1:52889147-52889166 | Msa1200310:intron | 55.0% | |
| ! | TCACGGCTAGTTCGGTATGG+TGG | + | chr8_1:52889474-52889493 | None:intergenic | 55.0% |
| ATGCGGAGACTCCAACTTGG+AGG | - | chr8_1:52889866-52889885 | Msa1200310:intron | 55.0% | |
| TGCGGAGACTCCAACTTGGA+GGG | - | chr8_1:52889867-52889886 | Msa1200310:intron | 55.0% | |
| TCACCAGGGTCTCATGGACA+TGG | - | chr8_1:52890265-52890284 | Msa1200310:CDS | 55.0% | |
| ! | CATGGACATGGCGGTATTGG+AGG | - | chr8_1:52890277-52890296 | Msa1200310:CDS | 55.0% |
| CATGTCTCCCATGGTGCTCA+CGG | - | chr8_1:52890349-52890368 | Msa1200310:CDS | 55.0% | |
| TTATCCAGGTGGCTACCCAC+AGG | - | chr8_1:52890381-52890400 | Msa1200310:CDS | 55.0% | |
| TATCCAGGTGGCTACCCACA+GGG | - | chr8_1:52890382-52890401 | Msa1200310:CDS | 55.0% | |
| CATGTGCATATCCGCCCTGT+GGG | + | chr8_1:52890399-52890418 | None:intergenic | 55.0% | |
| TGCACATGGTGGCAGTCACA+TGG | - | chr8_1:52890411-52890430 | Msa1200310:exon | 55.0% | |
| GCACATGGTGGCAGTCACAT+GGG | - | chr8_1:52890412-52890431 | Msa1200310:exon | 55.0% | |
| TGGCAGTCACATGGGTCACA+TGG | - | chr8_1:52890420-52890439 | Msa1200310:exon | 55.0% | |
| GGCAGTCACATGGGTCACAT+GGG | - | chr8_1:52890421-52890440 | Msa1200310:exon | 55.0% | |
| ! | AACATGGTGGAGGCAAGCAC+GGG | - | chr8_1:52890518-52890537 | Msa1200310:intron | 55.0% |
| GCAAGCACGGGTTCAAGAAG+TGG | - | chr8_1:52890530-52890549 | Msa1200310:intron | 55.0% | |
| !! | GCTGCTGCACATGGTGGACA+TGG | - | chr8_1:52888991-52889010 | Msa1200310:CDS | 60.0% |
| !! | GCTGCACATGGTGGACATGG+AGG | - | chr8_1:52888994-52889013 | Msa1200310:CDS | 60.0% |
| GGAGGACATGGTTACCCACC+TGG | - | chr8_1:52889012-52889031 | Msa1200310:CDS | 60.0% | |
| ! | GTGGAGGGTATGCACCAGGT+GGG | + | chr8_1:52889029-52889048 | None:intergenic | 60.0% |
| ! | TGTGGAGGGTATGCACCAGG+TGG | + | chr8_1:52889030-52889049 | None:intergenic | 60.0% |
| TGTGGAGGATACCCAGCAGG+TGG | + | chr8_1:52889063-52889082 | None:intergenic | 60.0% | |
| ! | GGTGGGTACCCTTGTTGTGG+AGG | + | chr8_1:52889111-52889130 | None:intergenic | 60.0% |
| GCAGGTGGGTACCCTTGTTG+TGG | + | chr8_1:52889114-52889133 | None:intergenic | 60.0% | |
| !! | CAACAAGGGTACCCACCTGC+TGG | - | chr8_1:52889114-52889133 | Msa1200310:intron | 60.0% |
| GCACCAGGATAACCAGCAGG+TGG | + | chr8_1:52889129-52889148 | None:intergenic | 60.0% | |
| TGTGCAGGAGCCCTCCAAGT+TGG | + | chr8_1:52889880-52889899 | None:intergenic | 60.0% | |
| CTTGGAGGGCTCCTGCACAT+TGG | - | chr8_1:52889881-52889900 | Msa1200310:intron | 60.0% | |
| CCAGGGTCTCATGGACATGG+CGG | - | chr8_1:52890268-52890287 | Msa1200310:CDS | 60.0% | |
| GGCACTCACCATGTCTCCCA+TGG | - | chr8_1:52890340-52890359 | Msa1200310:CDS | 60.0% | |
| CGTGAGCACCATGGGAGACA+TGG | + | chr8_1:52890351-52890370 | None:intergenic | 60.0% | |
| CCATGTGCATATCCGCCCTG+TGG | + | chr8_1:52890400-52890419 | None:intergenic | 60.0% | |
| CCACAGGGCGGATATGCACA+TGG | - | chr8_1:52890397-52890416 | Msa1200310:CDS | 60.0% | |
| CAGGGCGGATATGCACATGG+TGG | - | chr8_1:52890400-52890419 | Msa1200310:CDS | 60.0% | |
| CACATGGGTCACATGGGCCA+CGG | - | chr8_1:52890427-52890446 | Msa1200310:exon | 60.0% | |
| !! | GCTGGTGCTGCTGCACATGG+TGG | - | chr8_1:52888985-52889004 | Msa1200310:CDS | 65.0% |
| CCGCCATGTCCATGAGACCC+TGG | + | chr8_1:52890271-52890290 | None:intergenic | 65.0% | |
| GCTGCTGCTGCCGCTGCTTA+TGG | - | chr8_1:52890319-52890338 | Msa1200310:CDS | 65.0% | |
| ! | GTGAGCGCCGTGAGCACCAT+GGG | + | chr8_1:52890359-52890378 | None:intergenic | 65.0% |
| CATGGTGCTCACGGCGCTCA+CGG | - | chr8_1:52890358-52890377 | Msa1200310:CDS | 65.0% | |
| CACGGCGCTCACGGTTATCC+AGG | - | chr8_1:52890367-52890386 | Msa1200310:CDS | 65.0% | |
| GGCGCTCACGGTTATCCAGG+TGG | - | chr8_1:52890370-52890389 | Msa1200310:CDS | 65.0% | |
| ! | CGTGAGCGCCGTGAGCACCA+TGG | + | chr8_1:52890360-52890379 | None:intergenic | 70.0% |
| CCAGGTGGCTACCCACAGGG+CGG | - | chr8_1:52890385-52890404 | Msa1200310:CDS | 70.0% | |
| CCGCCCTGTGGGTAGCCACC+TGG | + | chr8_1:52890388-52890407 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 52888393 | 52890948 | 52888393 | ID=Msa1200310;Name=Msa1200310 |
| chr8_1 | mRNA | 52888393 | 52890948 | 52888393 | ID=Msa1200310-mRNA-1;Parent=Msa1200310;Name=Msa1200310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=150|1|1|1|0.5|0.33|3|390|180 |
| chr8_1 | exon | 52888393 | 52889069 | 52888393 | ID=Msa1200310-mRNA-1:exon:16939;Parent=Msa1200310-mRNA-1 |
| chr8_1 | exon | 52890173 | 52890453 | 52890173 | ID=Msa1200310-mRNA-1:exon:16938;Parent=Msa1200310-mRNA-1 |
| chr8_1 | exon | 52890824 | 52890948 | 52890824 | ID=Msa1200310-mRNA-1:exon:16937;Parent=Msa1200310-mRNA-1 |
| chr8_1 | five_prime_UTR | 52890824 | 52890948 | 52890824 | ID=Msa1200310-mRNA-1:five_prime_utr;Parent=Msa1200310-mRNA-1 |
| chr8_1 | five_prime_UTR | 52890429 | 52890453 | 52890429 | ID=Msa1200310-mRNA-1:five_prime_utr;Parent=Msa1200310-mRNA-1 |
| chr8_1 | CDS | 52890173 | 52890428 | 52890173 | ID=Msa1200310-mRNA-1:cds;Parent=Msa1200310-mRNA-1 |
| chr8_1 | CDS | 52888783 | 52889069 | 52888783 | ID=Msa1200310-mRNA-1:cds;Parent=Msa1200310-mRNA-1 |
| chr8_1 | three_prime_UTR | 52888393 | 52888782 | 52888393 | ID=Msa1200310-mRNA-1:three_prime_utr;Parent=Msa1200310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
