AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205780 MtrunA17_Chr4g0055041 95.538 381 16 1 1 380 1 381 0.0 719
Msa1205780 MtrunA17_Chr2g0283381 61.917 386 136 3 1 379 1 382 5.94e-166 469
Msa1205780 MtrunA17_Chr7g0249781 56.704 358 142 5 20 373 15 363 2.61e-136 393
Msa1205780 MtrunA17_Chr3g0102091 51.312 343 163 2 33 374 45 384 8.70e-120 352
Msa1205780 MtrunA17_Chr3g0132551 31.720 372 235 7 17 375 2 367 2.29e-58 194
Msa1205780 MtrunA17_Chr5g0426921 34.545 330 208 3 47 371 32 358 1.76e-57 191
Msa1205780 MtrunA17_Chr8g0346091 31.778 343 212 4 25 362 44 369 1.28e-53 181
Msa1205780 MtrunA17_Chr6g0483671 51.299 154 75 0 207 360 3 156 1.80e-53 174
Msa1205780 MtrunA17_Chr3g0132561 28.032 371 212 8 17 376 2 328 1.75e-45 159
Msa1205780 MtrunA17_Chr2g0296491 33.651 315 187 5 42 350 78 376 3.19e-45 160
Msa1205780 MtrunA17_Chr2g0296481 33.333 324 195 7 56 373 72 380 3.87e-40 146
Msa1205780 MtrunA17_Chr2g0313931 44.720 161 70 4 16 165 2 154 6.87e-33 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205780 AT4G18210.1 52.493 381 164 5 1 376 7 375 3.73e-127 371
Msa1205780 AT4G18220.1 50.260 384 178 4 1 378 7 383 8.59e-124 363
Msa1205780 AT1G44750.1 51.705 352 159 2 27 378 36 376 2.23e-121 356
Msa1205780 AT1G44750.6 51.705 352 159 2 27 378 24 364 3.10e-121 355
Msa1205780 AT1G44750.2 51.705 352 159 2 27 378 24 364 3.10e-121 355
Msa1205780 AT4G18195.1 48.813 379 178 4 8 379 22 391 5.36e-108 322
Msa1205780 AT4G18205.1 48.295 352 175 2 17 367 22 367 1.42e-106 318
Msa1205780 AT4G18190.1 48.634 366 176 3 5 366 9 366 2.57e-106 318
Msa1205780 AT4G08700.1 46.910 356 175 4 18 371 18 361 8.23e-104 311
Msa1205780 AT1G44750.7 56.767 266 112 1 113 378 38 300 3.08e-103 307
Msa1205780 AT1G44750.5 56.767 266 112 1 113 378 38 300 3.08e-103 307
Msa1205780 AT1G44750.4 56.767 266 112 1 113 378 38 300 3.08e-103 307
Msa1205780 AT1G44750.8 56.767 266 112 1 113 378 38 300 3.08e-103 307
Msa1205780 AT1G44750.3 56.767 266 112 1 113 378 38 300 3.08e-103 307
Msa1205780 AT4G18197.1 47.175 354 177 3 15 367 26 370 4.38e-103 310
Msa1205780 AT5G41160.1 46.089 358 182 4 16 371 16 364 1.10e-98 298
Msa1205780 AT2G33750.2 37.126 334 201 2 42 372 13 340 1.01e-72 231
Msa1205780 AT2G33750.1 35.942 345 201 3 42 372 13 351 3.21e-69 222
Msa1205780 AT1G28220.1 34.462 325 202 5 42 361 11 329 3.18e-68 219
Msa1205780 AT1G28230.1 38.700 323 186 5 47 361 16 334 1.01e-64 210
Msa1205780 AT1G57990.1 32.031 384 224 10 6 361 2 376 6.40e-48 167
Msa1205780 AT1G57980.1 32.637 383 212 9 13 361 10 380 5.34e-47 165
Msa1205780 AT1G57943.1 31.707 410 223 13 6 376 2 393 1.66e-46 164
Msa1205780 AT1G57943.2 31.785 409 223 14 6 376 2 392 4.29e-46 162
Msa1205780 AT1G30840.2 32.945 343 205 7 17 353 13 336 1.81e-38 142
Msa1205780 AT1G30840.1 32.945 343 205 7 17 353 13 336 1.81e-38 142
Msa1205780 AT1G09860.1 31.139 395 227 12 1 368 1 377 6.43e-38 140
Msa1205780 AT1G47603.1 30.526 380 223 10 6 363 23 383 5.75e-37 138
Msa1205780 AT2G24220.2 29.223 373 224 4 1 348 1 358 2.16e-36 136
Msa1205780 AT2G24220.1 30.240 334 214 2 19 348 22 340 8.25e-36 134
Msa1205780 AT1G19770.1 30.792 341 204 7 47 362 59 392 9.07e-35 132
Msa1205780 AT1G75470.1 31.839 223 139 4 143 353 151 372 5.71e-23 99.8

Find 82 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACAATGATGGAAAATTT+TGG 0.212423 8_1:+62246500 None:intergenic
GATATTTATGTTGGTAGATT+TGG 0.246168 8_1:+62246550 None:intergenic
CCAAGTACTCGCTTATCTTT+AGG 0.253149 8_1:+62246233 None:intergenic
TAGCCTTGATGTTAGCAATA+TGG 0.260377 8_1:-62245806 Msa1205780:CDS
GTATCTTCCATTGGTATGTT+AGG 0.270589 8_1:-62245945 Msa1205780:CDS
CATATATAATGACTTTGTTT+TGG 0.282504 8_1:-62245986 Msa1205780:CDS
ATAAAGGTGGTAATAGTAAA+TGG 0.292040 8_1:-62246643 Msa1205780:CDS
TCAATCTACAGCCAATCTTT+TGG 0.300726 8_1:-62246681 Msa1205780:CDS
ATATGAATGCTGTGAACTTT+TGG 0.301822 8_1:+62246333 None:intergenic
GGAAGACTATATTATGATAA+AGG 0.336418 8_1:-62246659 Msa1205780:CDS
TCTCTACATAGTATTTCTTT+TGG 0.340663 8_1:-62246708 Msa1205780:CDS
GCTACTTGTGCTTGTGTTGT+TGG 0.342888 8_1:-62246077 Msa1205780:CDS
GATATGATAGGATACGGAAT+TGG 0.342912 8_1:+62247329 None:intergenic
AGCCTTGATGTTAGCAATAT+GGG 0.344380 8_1:-62245805 Msa1205780:CDS
TTCTCTAATGGAGATAGTTC+AGG 0.361251 8_1:-62247292 Msa1205780:exon
GGAGATGAAGGAATATGAAC+TGG 0.366582 8_1:-62246018 Msa1205780:CDS
CTCATCTTCATGAGGTTTCA+AGG 0.373710 8_1:-62245722 Msa1205780:CDS
AAATAGAGTGGAAGTAGTAT+AGG 0.379492 8_1:+62246590 None:intergenic
GCAACATTTGTTCAATCAGC+TGG 0.388372 8_1:-62246617 Msa1205780:CDS
TTCTTCCATGACAAAATCAA+TGG 0.388872 8_1:-62245840 Msa1205780:CDS
CTACTTGTGCTTGTGTTGTT+GGG 0.389251 8_1:-62246076 Msa1205780:CDS
CCTAAAGATAAGCGAGTACT+TGG 0.390852 8_1:-62246233 Msa1205780:CDS
AATAGAGTGGAAGTAGTATA+GGG 0.393496 8_1:+62246591 None:intergenic
AGAATGGAAAAGTTTGAATA+AGG 0.399319 8_1:-62246039 Msa1205780:CDS
ATCATCAGAATCGTTATTGA+TGG 0.404902 8_1:+62246268 None:intergenic
TGTAAAAGCTATGATATGAT+AGG 0.406247 8_1:+62247317 None:intergenic
GCACAAGTAGCGACGAAAGA+AGG 0.407661 8_1:+62246089 None:intergenic
ATCAATATTGATATTTATGT+TGG 0.410871 8_1:+62246541 None:intergenic
TAGATAATGTTGATAAATAT+AGG 0.416324 8_1:+62245773 None:intergenic
GTAAGAAAATACTGCATTGA+AGG 0.434994 8_1:+62246367 None:intergenic
TATCTTCCATTGGTATGTTA+GGG 0.435640 8_1:-62245944 Msa1205780:CDS
TCTTCCATGACAAAATCAAT+GGG 0.440740 8_1:-62245839 Msa1205780:CDS
CTTGGATTCGTCTTCACCCT+TGG 0.444186 8_1:-62246215 Msa1205780:CDS
ATATGATAGGATACGGAATT+GGG 0.449764 8_1:+62247330 None:intergenic
GGTTGTTTGCAAGTGGAGAA+TGG 0.463564 8_1:-62246055 Msa1205780:CDS
ATATAGTCTTCCCAAAAGAT+TGG 0.476719 8_1:+62246670 None:intergenic
GAAGAAAATAACAGCAAGGA+TGG 0.477070 8_1:+62245857 None:intergenic
CAGTAGTTGTAGTTGATTGT+GGG 0.484203 8_1:+62247262 None:intergenic
GAAGATTAAGAGATTTCAAA+TGG 0.485201 8_1:-62246745 Msa1205780:CDS
TCATGAGGTTTCAAGGGGTG+AGG 0.500851 8_1:-62245715 Msa1205780:CDS
TGTTGCACATAGTAAAGAAT+AGG 0.504800 8_1:+62246397 None:intergenic
ATCGTTATTGATGGCAAGTA+GGG 0.507986 8_1:+62246277 None:intergenic
AAGTTTGAATAAGGAGATGA+AGG 0.509849 8_1:-62246030 Msa1205780:CDS
TCTCTTAATCTTCGATGTTG+AGG 0.511455 8_1:+62246755 None:intergenic
AGCTATGATATGATAGGATA+CGG 0.515458 8_1:+62247323 None:intergenic
TGAAAGATATAGAAGTCCAT+TGG 0.520330 8_1:+62246427 None:intergenic
AAACTGCATGTCCAAGATAA+CGG 0.522371 8_1:+62246115 None:intergenic
TCATCTTCATGAGGTTTCAA+GGG 0.524727 8_1:-62245721 Msa1205780:CDS
GCAGTAGTTGTAGTTGATTG+TGG 0.527047 8_1:+62247261 None:intergenic
ACAGCAAGGATGGGACCTAC+AGG 0.527733 8_1:+62245867 None:intergenic
CATGTCCAAGATAACGGAAA+AGG 0.529515 8_1:+62246121 None:intergenic
CACAAGTAGCGACGAAAGAA+GGG 0.536717 8_1:+62246090 None:intergenic
GACAATTTGATGTATTCCAA+TGG 0.539300 8_1:-62246443 Msa1205780:CDS
AATCGTTATTGATGGCAAGT+AGG 0.540072 8_1:+62246276 None:intergenic
TATGTAAAGAGAAACAATGA+TGG 0.542651 8_1:+62246490 None:intergenic
GTTGTTGGGTTGTTTGCAAG+TGG 0.551141 8_1:-62246062 Msa1205780:CDS
TCCCCATATTGCTAACATCA+AGG 0.553521 8_1:+62245803 None:intergenic
CAATCAACTACAACTACTGC+AGG 0.567854 8_1:-62247258 Msa1205780:intron
AGGTGGTAATAGTAAATGGA+TGG 0.571564 8_1:-62246639 Msa1205780:CDS
AACTAACCCTAACATACCAA+TGG 0.573549 8_1:+62245938 None:intergenic
ACATGGCAAGTATCTTCCAT+TGG 0.573996 8_1:-62245954 Msa1205780:CDS
TGTCAAAAGAAAGCTGCACA+AGG 0.574825 8_1:+62246162 None:intergenic
ATGTTGGTAGATTTGGCATG+TGG 0.579676 8_1:+62246557 None:intergenic
GAAGGAATATGAACTGGGAA+AGG 0.585101 8_1:-62246012 Msa1205780:CDS
GTGAGGTTGAAATTTGCTGA+TGG 0.585220 8_1:-62245698 None:intergenic
TGCACATAGTAAAGAATAGG+TGG 0.594060 8_1:+62246400 None:intergenic
GATTAAGAGATTTCAAATGG+TGG 0.597584 8_1:-62246742 Msa1205780:CDS
AGACTATATTATGATAAAGG+TGG 0.598402 8_1:-62246656 Msa1205780:CDS
GAGATGAAGGAATATGAACT+GGG 0.604093 8_1:-62246017 Msa1205780:CDS
AAATGTAATAGATGCACCAA+GGG 0.606332 8_1:+62246199 None:intergenic
GCCTTGATGTTAGCAATATG+GGG 0.607447 8_1:-62245804 Msa1205780:CDS
AAGAAAATAACAGCAAGGAT+GGG 0.616093 8_1:+62245858 None:intergenic
ACAACATCAGTATTTGCAAG+TGG 0.622186 8_1:+62247361 None:intergenic
CATCTTCATGAGGTTTCAAG+GGG 0.629974 8_1:-62245720 Msa1205780:CDS
CATGGAAGAAAATAACAGCA+AGG 0.631020 8_1:+62245853 None:intergenic
AATACAGTGGTACTTCCTGT+AGG 0.636862 8_1:-62245882 Msa1205780:CDS
GAATAAAACTCATCTTCATG+AGG 0.640768 8_1:-62245730 Msa1205780:CDS
CTCAAATGTAATAAATACAG+TGG 0.647972 8_1:-62245895 Msa1205780:CDS
AAAATGTAATAGATGCACCA+AGG 0.652741 8_1:+62246198 None:intergenic
CTTCCATGACAAAATCAATG+GGG 0.656091 8_1:-62245838 Msa1205780:CDS
GGTGTGAAGATAAAATAGAG+TGG 0.659598 8_1:+62246578 None:intergenic
GTCAAAAGAAAGCTGCACAA+GGG 0.669271 8_1:+62246163 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATATTGATATTTATGT+TGG + chr8_1:62246543-62246562 None:intergenic 15.0%
!!! TAGATAATGTTGATAAATAT+AGG + chr8_1:62247311-62247330 None:intergenic 15.0%
!! ATCAATATTGATATTTATGT+TGG + chr8_1:62246543-62246562 None:intergenic 15.0%
!!! TAGATAATGTTGATAAATAT+AGG + chr8_1:62247311-62247330 None:intergenic 15.0%
!!! ATAATTTTCAATAGTTAGGA+AGG + chr8_1:62246074-62246093 None:intergenic 20.0%
!! TCCTAACTATTGAAAATTAT+TGG - chr8_1:62246074-62246093 Msa1205780:CDS 20.0%
!! GAAATTCATAACAAGAAATT+GGG + chr8_1:62246285-62246304 None:intergenic 20.0%
!! AGAAATTCATAACAAGAAAT+TGG + chr8_1:62246286-62246305 None:intergenic 20.0%
!!! AAATTTTGGTTTGGTTTTTT+TGG + chr8_1:62246570-62246589 None:intergenic 20.0%
!!! GTTTCTCTTTACATATTTTT+TGG - chr8_1:62246599-62246618 Msa1205780:CDS 20.0%
!!! CATATATAATGACTTTGTTT+TGG - chr8_1:62247095-62247114 Msa1205780:intron 20.0%
!!! ATAATTTTCAATAGTTAGGA+AGG + chr8_1:62246074-62246093 None:intergenic 20.0%
!! TCCTAACTATTGAAAATTAT+TGG - chr8_1:62246074-62246093 Msa1205780:CDS 20.0%
!! GAAATTCATAACAAGAAATT+GGG + chr8_1:62246285-62246304 None:intergenic 20.0%
!! AGAAATTCATAACAAGAAAT+TGG + chr8_1:62246286-62246305 None:intergenic 20.0%
!!! AAATTTTGGTTTGGTTTTTT+TGG + chr8_1:62246570-62246589 None:intergenic 20.0%
!!! GTTTCTCTTTACATATTTTT+TGG - chr8_1:62246599-62246618 Msa1205780:CDS 20.0%
!!! CATATATAATGACTTTGTTT+TGG - chr8_1:62247095-62247114 Msa1205780:intron 20.0%
! TGTAAAAGCTATGATATGAT+AGG + chr8_1:62245767-62245786 None:intergenic 25.0%
!! AATACATCAAAACTTGCTTT+AGG - chr8_1:62246048-62246067 Msa1205780:CDS 25.0%
!! GCCAATAATTTTCAATAGTT+AGG + chr8_1:62246078-62246097 None:intergenic 25.0%
! GAAGATTAAGAGATTTCAAA+TGG - chr8_1:62246336-62246355 Msa1205780:CDS 25.0%
!! TCTCTACATAGTATTTCTTT+TGG - chr8_1:62246373-62246392 Msa1205780:CDS 25.0%
!! TACATAGTATTTCTTTTGGT+AGG - chr8_1:62246377-62246396 Msa1205780:CDS 25.0%
! GGAAGACTATATTATGATAA+AGG - chr8_1:62246422-62246441 Msa1205780:CDS 25.0%
! AGACTATATTATGATAAAGG+TGG - chr8_1:62246425-62246444 Msa1205780:CDS 25.0%
! ATAAAGGTGGTAATAGTAAA+TGG - chr8_1:62246438-62246457 Msa1205780:CDS 25.0%
!! GATATTTATGTTGGTAGATT+TGG + chr8_1:62246534-62246553 None:intergenic 25.0%
!!! AATGATGGAAAATTTTGGTT+TGG + chr8_1:62246579-62246598 None:intergenic 25.0%
!!! GAAACAATGATGGAAAATTT+TGG + chr8_1:62246584-62246603 None:intergenic 25.0%
! TATGTAAAGAGAAACAATGA+TGG + chr8_1:62246594-62246613 None:intergenic 25.0%
! AGAATGGAAAAGTTTGAATA+AGG - chr8_1:62247042-62247061 Msa1205780:intron 25.0%
! CTCAAATGTAATAAATACAG+TGG - chr8_1:62247186-62247205 Msa1205780:intron 25.0%
! TGTAAAAGCTATGATATGAT+AGG + chr8_1:62245767-62245786 None:intergenic 25.0%
!! AATACATCAAAACTTGCTTT+AGG - chr8_1:62246048-62246067 Msa1205780:CDS 25.0%
!! GCCAATAATTTTCAATAGTT+AGG + chr8_1:62246078-62246097 None:intergenic 25.0%
! GAAGATTAAGAGATTTCAAA+TGG - chr8_1:62246336-62246355 Msa1205780:CDS 25.0%
!! TCTCTACATAGTATTTCTTT+TGG - chr8_1:62246373-62246392 Msa1205780:CDS 25.0%
!! TACATAGTATTTCTTTTGGT+AGG - chr8_1:62246377-62246396 Msa1205780:CDS 25.0%
! GGAAGACTATATTATGATAA+AGG - chr8_1:62246422-62246441 Msa1205780:CDS 25.0%
! AGACTATATTATGATAAAGG+TGG - chr8_1:62246425-62246444 Msa1205780:CDS 25.0%
! ATAAAGGTGGTAATAGTAAA+TGG - chr8_1:62246438-62246457 Msa1205780:CDS 25.0%
!! GATATTTATGTTGGTAGATT+TGG + chr8_1:62246534-62246553 None:intergenic 25.0%
!!! AATGATGGAAAATTTTGGTT+TGG + chr8_1:62246579-62246598 None:intergenic 25.0%
!!! GAAACAATGATGGAAAATTT+TGG + chr8_1:62246584-62246603 None:intergenic 25.0%
! TATGTAAAGAGAAACAATGA+TGG + chr8_1:62246594-62246613 None:intergenic 25.0%
! AGAATGGAAAAGTTTGAATA+AGG - chr8_1:62247042-62247061 Msa1205780:intron 25.0%
! CTCAAATGTAATAAATACAG+TGG - chr8_1:62247186-62247205 Msa1205780:intron 25.0%
ATATGATAGGATACGGAATT+GGG + chr8_1:62245754-62245773 None:intergenic 30.0%
AGCTATGATATGATAGGATA+CGG + chr8_1:62245761-62245780 None:intergenic 30.0%
! AGCTTTTACACTTTCTCTAA+TGG - chr8_1:62245777-62245796 Msa1205780:CDS 30.0%
TCTGATAAATCACATGTCAA+TGG - chr8_1:62246021-62246040 Msa1205780:CDS 30.0%
TCAGTAGTGAAAGATTAACA+TGG + chr8_1:62246100-62246119 None:intergenic 30.0%
! ACACAAAGTTGAGTCAATTT+TGG + chr8_1:62246165-62246184 None:intergenic 30.0%
! TCTTGTTATGAATTTCTCAG+AGG - chr8_1:62246289-62246308 Msa1205780:CDS 30.0%
GATTAAGAGATTTCAAATGG+TGG - chr8_1:62246339-62246358 Msa1205780:CDS 30.0%
ATATAGTCTTCCCAAAAGAT+TGG + chr8_1:62246414-62246433 None:intergenic 30.0%
AATAGAGTGGAAGTAGTATA+GGG + chr8_1:62246493-62246512 None:intergenic 30.0%
AAATAGAGTGGAAGTAGTAT+AGG + chr8_1:62246494-62246513 None:intergenic 30.0%
!!! TTTTGGTTTGGTTTTTTTGG+AGG + chr8_1:62246567-62246586 None:intergenic 30.0%
!!! TTTTTTGGCTTACTTTTAGC+AGG - chr8_1:62246614-62246633 Msa1205780:CDS 30.0%
!!! TTTTTGGCTTACTTTTAGCA+GGG - chr8_1:62246615-62246634 Msa1205780:CDS 30.0%
GACAATTTGATGTATTCCAA+TGG - chr8_1:62246638-62246657 Msa1205780:CDS 30.0%
TGAAAGATATAGAAGTCCAT+TGG + chr8_1:62246657-62246676 None:intergenic 30.0%
TGTTGCACATAGTAAAGAAT+AGG + chr8_1:62246687-62246706 None:intergenic 30.0%
GTAAGAAAATACTGCATTGA+AGG + chr8_1:62246717-62246736 None:intergenic 30.0%
! TATGAATGCTGTGAACTTTT+GGG + chr8_1:62246750-62246769 None:intergenic 30.0%
! ATATGAATGCTGTGAACTTT+TGG + chr8_1:62246751-62246770 None:intergenic 30.0%
ATCATCAGAATCGTTATTGA+TGG + chr8_1:62246816-62246835 None:intergenic 30.0%
AAATGTAATAGATGCACCAA+GGG + chr8_1:62246885-62246904 None:intergenic 30.0%
AAAATGTAATAGATGCACCA+AGG + chr8_1:62246886-62246905 None:intergenic 30.0%
AAGTTTGAATAAGGAGATGA+AGG - chr8_1:62247051-62247070 Msa1205780:intron 30.0%
TATCTTCCATTGGTATGTTA+GGG - chr8_1:62247137-62247156 Msa1205780:intron 30.0%
AAGAAAATAACAGCAAGGAT+GGG + chr8_1:62247226-62247245 None:intergenic 30.0%
TTCTTCCATGACAAAATCAA+TGG - chr8_1:62247241-62247260 Msa1205780:intron 30.0%
TCTTCCATGACAAAATCAAT+GGG - chr8_1:62247242-62247261 Msa1205780:intron 30.0%
GAATAAAACTCATCTTCATG+AGG - chr8_1:62247351-62247370 Msa1205780:five_prime_UTR 30.0%
ATATGATAGGATACGGAATT+GGG + chr8_1:62245754-62245773 None:intergenic 30.0%
AGCTATGATATGATAGGATA+CGG + chr8_1:62245761-62245780 None:intergenic 30.0%
! AGCTTTTACACTTTCTCTAA+TGG - chr8_1:62245777-62245796 Msa1205780:CDS 30.0%
TCTGATAAATCACATGTCAA+TGG - chr8_1:62246021-62246040 Msa1205780:CDS 30.0%
TCAGTAGTGAAAGATTAACA+TGG + chr8_1:62246100-62246119 None:intergenic 30.0%
! ACACAAAGTTGAGTCAATTT+TGG + chr8_1:62246165-62246184 None:intergenic 30.0%
! TCTTGTTATGAATTTCTCAG+AGG - chr8_1:62246289-62246308 Msa1205780:CDS 30.0%
GATTAAGAGATTTCAAATGG+TGG - chr8_1:62246339-62246358 Msa1205780:CDS 30.0%
ATATAGTCTTCCCAAAAGAT+TGG + chr8_1:62246414-62246433 None:intergenic 30.0%
AATAGAGTGGAAGTAGTATA+GGG + chr8_1:62246493-62246512 None:intergenic 30.0%
AAATAGAGTGGAAGTAGTAT+AGG + chr8_1:62246494-62246513 None:intergenic 30.0%
!!! TTTTGGTTTGGTTTTTTTGG+AGG + chr8_1:62246567-62246586 None:intergenic 30.0%
!!! TTTTTTGGCTTACTTTTAGC+AGG - chr8_1:62246614-62246633 Msa1205780:CDS 30.0%
!!! TTTTTGGCTTACTTTTAGCA+GGG - chr8_1:62246615-62246634 Msa1205780:CDS 30.0%
GACAATTTGATGTATTCCAA+TGG - chr8_1:62246638-62246657 Msa1205780:CDS 30.0%
TGAAAGATATAGAAGTCCAT+TGG + chr8_1:62246657-62246676 None:intergenic 30.0%
TGTTGCACATAGTAAAGAAT+AGG + chr8_1:62246687-62246706 None:intergenic 30.0%
GTAAGAAAATACTGCATTGA+AGG + chr8_1:62246717-62246736 None:intergenic 30.0%
! TATGAATGCTGTGAACTTTT+GGG + chr8_1:62246750-62246769 None:intergenic 30.0%
! ATATGAATGCTGTGAACTTT+TGG + chr8_1:62246751-62246770 None:intergenic 30.0%
ATCATCAGAATCGTTATTGA+TGG + chr8_1:62246816-62246835 None:intergenic 30.0%
AAATGTAATAGATGCACCAA+GGG + chr8_1:62246885-62246904 None:intergenic 30.0%
AAAATGTAATAGATGCACCA+AGG + chr8_1:62246886-62246905 None:intergenic 30.0%
AAGTTTGAATAAGGAGATGA+AGG - chr8_1:62247051-62247070 Msa1205780:intron 30.0%
TATCTTCCATTGGTATGTTA+GGG - chr8_1:62247137-62247156 Msa1205780:intron 30.0%
AAGAAAATAACAGCAAGGAT+GGG + chr8_1:62247226-62247245 None:intergenic 30.0%
TTCTTCCATGACAAAATCAA+TGG - chr8_1:62247241-62247260 Msa1205780:intron 30.0%
TCTTCCATGACAAAATCAAT+GGG - chr8_1:62247242-62247261 Msa1205780:intron 30.0%
GAATAAAACTCATCTTCATG+AGG - chr8_1:62247351-62247370 Msa1205780:five_prime_UTR 30.0%
ACAACATCAGTATTTGCAAG+TGG + chr8_1:62245723-62245742 None:intergenic 35.0%
GATATGATAGGATACGGAAT+TGG + chr8_1:62245755-62245774 None:intergenic 35.0%
TTCTCTAATGGAGATAGTTC+AGG - chr8_1:62245789-62245808 Msa1205780:CDS 35.0%
CAGTAGTTGTAGTTGATTGT+GGG + chr8_1:62245822-62245841 None:intergenic 35.0%
TAGAACAATGAACACCAGTA+CGG + chr8_1:62246229-62246248 None:intergenic 35.0%
TCTCTTAATCTTCGATGTTG+AGG + chr8_1:62246329-62246348 None:intergenic 35.0%
! TCAATCTACAGCCAATCTTT+TGG - chr8_1:62246400-62246419 Msa1205780:CDS 35.0%
! CAATCTACAGCCAATCTTTT+GGG - chr8_1:62246401-62246420 Msa1205780:CDS 35.0%
AGGTGGTAATAGTAAATGGA+TGG - chr8_1:62246442-62246461 Msa1205780:CDS 35.0%
GGTGTGAAGATAAAATAGAG+TGG + chr8_1:62246506-62246525 None:intergenic 35.0%
!!! TTTTGGCTTACTTTTAGCAG+GGG - chr8_1:62246616-62246635 Msa1205780:CDS 35.0%
TGCACATAGTAAAGAATAGG+TGG + chr8_1:62246684-62246703 None:intergenic 35.0%
!! CTGTGAACTTTTGGGAATTA+AGG + chr8_1:62246742-62246761 None:intergenic 35.0%
! ATCGTTATTGATGGCAAGTA+GGG + chr8_1:62246807-62246826 None:intergenic 35.0%
! AATCGTTATTGATGGCAAGT+AGG + chr8_1:62246808-62246827 None:intergenic 35.0%
! TGAAACCTTTTCCGTTATCT+TGG - chr8_1:62246955-62246974 Msa1205780:intron 35.0%
AAACTGCATGTCCAAGATAA+CGG + chr8_1:62246969-62246988 None:intergenic 35.0%
GAGATGAAGGAATATGAACT+GGG - chr8_1:62247064-62247083 Msa1205780:intron 35.0%
GTATCTTCCATTGGTATGTT+AGG - chr8_1:62247136-62247155 Msa1205780:intron 35.0%
AACTAACCCTAACATACCAA+TGG + chr8_1:62247146-62247165 None:intergenic 35.0%
GAAGAAAATAACAGCAAGGA+TGG + chr8_1:62247227-62247246 None:intergenic 35.0%
CATGGAAGAAAATAACAGCA+AGG + chr8_1:62247231-62247250 None:intergenic 35.0%
CTTCCATGACAAAATCAATG+GGG - chr8_1:62247243-62247262 Msa1205780:intron 35.0%
! TAGCCTTGATGTTAGCAATA+TGG - chr8_1:62247275-62247294 Msa1205780:CDS 35.0%
AGCCTTGATGTTAGCAATAT+GGG - chr8_1:62247276-62247295 Msa1205780:CDS 35.0%
TCTAGATGACAAAAAAGCCA+AGG - chr8_1:62247327-62247346 Msa1205780:five_prime_UTR 35.0%
!!! AAGATGAGTTTTATTCGCCT+TGG + chr8_1:62247347-62247366 None:intergenic 35.0%
TCATCTTCATGAGGTTTCAA+GGG - chr8_1:62247360-62247379 Msa1205780:five_prime_UTR 35.0%
ACAACATCAGTATTTGCAAG+TGG + chr8_1:62245723-62245742 None:intergenic 35.0%
GATATGATAGGATACGGAAT+TGG + chr8_1:62245755-62245774 None:intergenic 35.0%
TTCTCTAATGGAGATAGTTC+AGG - chr8_1:62245789-62245808 Msa1205780:CDS 35.0%
CAGTAGTTGTAGTTGATTGT+GGG + chr8_1:62245822-62245841 None:intergenic 35.0%
TAGAACAATGAACACCAGTA+CGG + chr8_1:62246229-62246248 None:intergenic 35.0%
TCTCTTAATCTTCGATGTTG+AGG + chr8_1:62246329-62246348 None:intergenic 35.0%
! TCAATCTACAGCCAATCTTT+TGG - chr8_1:62246400-62246419 Msa1205780:CDS 35.0%
! CAATCTACAGCCAATCTTTT+GGG - chr8_1:62246401-62246420 Msa1205780:CDS 35.0%
AGGTGGTAATAGTAAATGGA+TGG - chr8_1:62246442-62246461 Msa1205780:CDS 35.0%
GGTGTGAAGATAAAATAGAG+TGG + chr8_1:62246506-62246525 None:intergenic 35.0%
!!! TTTTGGCTTACTTTTAGCAG+GGG - chr8_1:62246616-62246635 Msa1205780:CDS 35.0%
TGCACATAGTAAAGAATAGG+TGG + chr8_1:62246684-62246703 None:intergenic 35.0%
!! CTGTGAACTTTTGGGAATTA+AGG + chr8_1:62246742-62246761 None:intergenic 35.0%
! ATCGTTATTGATGGCAAGTA+GGG + chr8_1:62246807-62246826 None:intergenic 35.0%
! AATCGTTATTGATGGCAAGT+AGG + chr8_1:62246808-62246827 None:intergenic 35.0%
! TGAAACCTTTTCCGTTATCT+TGG - chr8_1:62246955-62246974 Msa1205780:intron 35.0%
AAACTGCATGTCCAAGATAA+CGG + chr8_1:62246969-62246988 None:intergenic 35.0%
GAGATGAAGGAATATGAACT+GGG - chr8_1:62247064-62247083 Msa1205780:intron 35.0%
GTATCTTCCATTGGTATGTT+AGG - chr8_1:62247136-62247155 Msa1205780:intron 35.0%
AACTAACCCTAACATACCAA+TGG + chr8_1:62247146-62247165 None:intergenic 35.0%
GAAGAAAATAACAGCAAGGA+TGG + chr8_1:62247227-62247246 None:intergenic 35.0%
CATGGAAGAAAATAACAGCA+AGG + chr8_1:62247231-62247250 None:intergenic 35.0%
CTTCCATGACAAAATCAATG+GGG - chr8_1:62247243-62247262 Msa1205780:intron 35.0%
! TAGCCTTGATGTTAGCAATA+TGG - chr8_1:62247275-62247294 Msa1205780:CDS 35.0%
AGCCTTGATGTTAGCAATAT+GGG - chr8_1:62247276-62247295 Msa1205780:CDS 35.0%
TCTAGATGACAAAAAAGCCA+AGG - chr8_1:62247327-62247346 Msa1205780:five_prime_UTR 35.0%
!!! AAGATGAGTTTTATTCGCCT+TGG + chr8_1:62247347-62247366 None:intergenic 35.0%
TCATCTTCATGAGGTTTCAA+GGG - chr8_1:62247360-62247379 Msa1205780:five_prime_UTR 35.0%
GCAGTAGTTGTAGTTGATTG+TGG + chr8_1:62245823-62245842 None:intergenic 40.0%
CAATCAACTACAACTACTGC+AGG - chr8_1:62245823-62245842 Msa1205780:CDS 40.0%
AACTACAACTACTGCAGGTT+AGG - chr8_1:62245828-62245847 Msa1205780:CDS 40.0%
ACTACTGCAGGTTAGGAATA+TGG - chr8_1:62245835-62245854 Msa1205780:CDS 40.0%
GCAACATTTGTTCAATCAGC+TGG - chr8_1:62246464-62246483 Msa1205780:CDS 40.0%
! ATGTTGGTAGATTTGGCATG+TGG + chr8_1:62246527-62246546 None:intergenic 40.0%
CCAAGTACTCGCTTATCTTT+AGG + chr8_1:62246851-62246870 None:intergenic 40.0%
CCTAAAGATAAGCGAGTACT+TGG - chr8_1:62246848-62246867 Msa1205780:intron 40.0%
GTCAAAAGAAAGCTGCACAA+GGG + chr8_1:62246921-62246940 None:intergenic 40.0%
TGTCAAAAGAAAGCTGCACA+AGG + chr8_1:62246922-62246941 None:intergenic 40.0%
!! CATGTCCAAGATAACGGAAA+AGG + chr8_1:62246963-62246982 None:intergenic 40.0%
! CTACTTGTGCTTGTGTTGTT+GGG - chr8_1:62247005-62247024 Msa1205780:intron 40.0%
GGAGATGAAGGAATATGAAC+TGG - chr8_1:62247063-62247082 Msa1205780:intron 40.0%
GAAGGAATATGAACTGGGAA+AGG - chr8_1:62247069-62247088 Msa1205780:intron 40.0%
!! TGTTTTGGATTGCTGTGACA+TGG - chr8_1:62247110-62247129 Msa1205780:intron 40.0%
ACATGGCAAGTATCTTCCAT+TGG - chr8_1:62247127-62247146 Msa1205780:intron 40.0%
AATACAGTGGTACTTCCTGT+AGG - chr8_1:62247199-62247218 Msa1205780:intron 40.0%
!!! TCACCCCATTGATTTTGTCA+TGG + chr8_1:62247249-62247268 None:intergenic 40.0%
GCCTTGATGTTAGCAATATG+GGG - chr8_1:62247277-62247296 Msa1205780:CDS 40.0%
TCCCCATATTGCTAACATCA+AGG + chr8_1:62247281-62247300 None:intergenic 40.0%
CTCATCTTCATGAGGTTTCA+AGG - chr8_1:62247359-62247378 Msa1205780:five_prime_UTR 40.0%
CATCTTCATGAGGTTTCAAG+GGG - chr8_1:62247361-62247380 Msa1205780:five_prime_UTR 40.0%
GCAGTAGTTGTAGTTGATTG+TGG + chr8_1:62245823-62245842 None:intergenic 40.0%
CAATCAACTACAACTACTGC+AGG - chr8_1:62245823-62245842 Msa1205780:CDS 40.0%
AACTACAACTACTGCAGGTT+AGG - chr8_1:62245828-62245847 Msa1205780:CDS 40.0%
ACTACTGCAGGTTAGGAATA+TGG - chr8_1:62245835-62245854 Msa1205780:CDS 40.0%
GCAACATTTGTTCAATCAGC+TGG - chr8_1:62246464-62246483 Msa1205780:CDS 40.0%
! ATGTTGGTAGATTTGGCATG+TGG + chr8_1:62246527-62246546 None:intergenic 40.0%
CCAAGTACTCGCTTATCTTT+AGG + chr8_1:62246851-62246870 None:intergenic 40.0%
CCTAAAGATAAGCGAGTACT+TGG - chr8_1:62246848-62246867 Msa1205780:intron 40.0%
GTCAAAAGAAAGCTGCACAA+GGG + chr8_1:62246921-62246940 None:intergenic 40.0%
TGTCAAAAGAAAGCTGCACA+AGG + chr8_1:62246922-62246941 None:intergenic 40.0%
!! CATGTCCAAGATAACGGAAA+AGG + chr8_1:62246963-62246982 None:intergenic 40.0%
! CTACTTGTGCTTGTGTTGTT+GGG - chr8_1:62247005-62247024 Msa1205780:intron 40.0%
GGAGATGAAGGAATATGAAC+TGG - chr8_1:62247063-62247082 Msa1205780:intron 40.0%
GAAGGAATATGAACTGGGAA+AGG - chr8_1:62247069-62247088 Msa1205780:intron 40.0%
!! TGTTTTGGATTGCTGTGACA+TGG - chr8_1:62247110-62247129 Msa1205780:intron 40.0%
ACATGGCAAGTATCTTCCAT+TGG - chr8_1:62247127-62247146 Msa1205780:intron 40.0%
AATACAGTGGTACTTCCTGT+AGG - chr8_1:62247199-62247218 Msa1205780:intron 40.0%
!!! TCACCCCATTGATTTTGTCA+TGG + chr8_1:62247249-62247268 None:intergenic 40.0%
GCCTTGATGTTAGCAATATG+GGG - chr8_1:62247277-62247296 Msa1205780:CDS 40.0%
TCCCCATATTGCTAACATCA+AGG + chr8_1:62247281-62247300 None:intergenic 40.0%
CTCATCTTCATGAGGTTTCA+AGG - chr8_1:62247359-62247378 Msa1205780:five_prime_UTR 40.0%
CATCTTCATGAGGTTTCAAG+GGG - chr8_1:62247361-62247380 Msa1205780:five_prime_UTR 40.0%
! TTTGCTCTTTTGAGCCGTAC+TGG - chr8_1:62246212-62246231 Msa1205780:CDS 45.0%
CACAAGTAGCGACGAAAGAA+GGG + chr8_1:62246994-62247013 None:intergenic 45.0%
GCTACTTGTGCTTGTGTTGT+TGG - chr8_1:62247004-62247023 Msa1205780:intron 45.0%
! GTTGTTGGGTTGTTTGCAAG+TGG - chr8_1:62247019-62247038 Msa1205780:intron 45.0%
GGTTGTTTGCAAGTGGAGAA+TGG - chr8_1:62247026-62247045 Msa1205780:intron 45.0%
! TTTGCTCTTTTGAGCCGTAC+TGG - chr8_1:62246212-62246231 Msa1205780:CDS 45.0%
CACAAGTAGCGACGAAAGAA+GGG + chr8_1:62246994-62247013 None:intergenic 45.0%
GCTACTTGTGCTTGTGTTGT+TGG - chr8_1:62247004-62247023 Msa1205780:intron 45.0%
! GTTGTTGGGTTGTTTGCAAG+TGG - chr8_1:62247019-62247038 Msa1205780:intron 45.0%
GGTTGTTTGCAAGTGGAGAA+TGG - chr8_1:62247026-62247045 Msa1205780:intron 45.0%
AAGACACTACCGTTGCTCTG+CGG - chr8_1:62246127-62246146 Msa1205780:CDS 50.0%
CTTGGATTCGTCTTCACCCT+TGG - chr8_1:62246866-62246885 Msa1205780:intron 50.0%
GCACAAGTAGCGACGAAAGA+AGG + chr8_1:62246995-62247014 None:intergenic 50.0%
TCATGAGGTTTCAAGGGGTG+AGG - chr8_1:62247366-62247385 Msa1205780:five_prime_UTR 50.0%
AAGACACTACCGTTGCTCTG+CGG - chr8_1:62246127-62246146 Msa1205780:CDS 50.0%
CTTGGATTCGTCTTCACCCT+TGG - chr8_1:62246866-62246885 Msa1205780:intron 50.0%
GCACAAGTAGCGACGAAAGA+AGG + chr8_1:62246995-62247014 None:intergenic 50.0%
TCATGAGGTTTCAAGGGGTG+AGG - chr8_1:62247366-62247385 Msa1205780:five_prime_UTR 50.0%
TGTCTCTGACCGCAGAGCAA+CGG + chr8_1:62246139-62246158 None:intergenic 55.0%
ACAGCAAGGATGGGACCTAC+AGG + chr8_1:62247217-62247236 None:intergenic 55.0%
TGTCTCTGACCGCAGAGCAA+CGG + chr8_1:62246139-62246158 None:intergenic 55.0%
ACAGCAAGGATGGGACCTAC+AGG + chr8_1:62247217-62247236 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 62245701 62247402 62245701 ID=Msa1205780;Name=Msa1205780
chr8_1 mRNA 62245701 62247402 62245701 ID=Msa1205780-mRNA-1;Parent=Msa1205780;Name=Msa1205780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=95|1|0.5|1|1|1|2|0|380
chr8_1 exon 62245701 62246794 62245701 ID=Msa1205780-mRNA-1:exon:20187;Parent=Msa1205780-mRNA-1
chr8_1 exon 62247259 62247402 62247259 ID=Msa1205780-mRNA-1:exon:20186;Parent=Msa1205780-mRNA-1
chr8_1 five_prime_UTR 62247308 62247402 62247308 ID=Msa1205780-mRNA-1:five_prime_utr;Parent=Msa1205780-mRNA-1
chr8_1 CDS 62247259 62247307 62247259 ID=Msa1205780-mRNA-1:cds;Parent=Msa1205780-mRNA-1
chr8_1 CDS 62245701 62246794 62245701 ID=Msa1205780-mRNA-1:cds;Parent=Msa1205780-mRNA-1
Gene Sequence

>Msa1205780

ATGGAGATAGTTCAGGATCTGCACCCACAATCAACTACAACTACTGCAGAGGAAAGAAATGAGCAACCTCAACATCGAAGATTAAGAGATTTCAAATGGTGGTTTCGTGTATCTCTCTACATAGTATTTCTTTTGGTAGGTCAATCTACAGCCAATCTTTTGGGAAGACTATATTATGATAAAGGTGGTAATAGTAAATGGATGGCAACATTTGTTCAATCAGCTGGATTCCCTATACTACTTCCACTCTATTTTATCTTCACACCACATGCCAAATCTACCAACATAAATATCAATATTGATTCCTCCAAAAAAACCAAACCAAAATTTTCCATCATTGTTTCTCTTTACATATTTTTTGGCTTACTTTTAGCAGGGGACAATTTGATGTATTCCAATGGACTTCTATATCTTTCACTTTCCACCTATTCTTTACTATGTGCAACACAATTAGCCTTCAATGCAGTATTTTCTTACTTCCTTAATTCCCAAAAGTTCACAGCATTCATATTCAATTCTGTAGTTCTGCTTACTATTTCGTCTGCCCTACTTGCCATCAATAACGATTCTGATGATTCGACGAATCTTCCTAAAGATAAGCGAGTACTTGGATTCGTCTTCACCCTTGGTGCATCTATTACATTTTCTTTATATCTCTCCCTTGTGCAGCTTTCTTTTGACAAAGTTATAAAAAGTGAAACCTTTTCCGTTATCTTGGACATGCAGTTTTACCCTTCTTTCGTCGCTACTTGTGCTTGTGTTGTTGGGTTGTTTGCAAGTGGAGAATGGAAAAGTTTGAATAAGGAGATGAAGGAATATGAACTGGGAAAGGTGTCATATATAATGACTTTGTTTTGGATTGCTGTGACATGGCAAGTATCTTCCATTGGTATGTTAGGGTTAGTTTTAGATGTATCTTCATTGTTCTCAAATGTAATAAATACAGTGGTACTTCCTGTAGGTCCCATCCTTGCTGTTATTTTCTTCCATGACAAAATCAATGGGGTGAAGTTTATAGCCTTGATGTTAGCAATATGGGGATTTCTTTCCTATATTTATCAACATTATCTAGATGACAAAAAAGCCAAGGCGAATAAAACTCATCTTCATGAGGTTTCAAGGGGTGAGGTTGAAATTTGCTGA
Protein sequence

>Msa1205780

MEIVQDLHPQSTTTTAEERNEQPQHRRLRDFKWWFRVSLYIVFLLVGQSTANLLGRLYYDKGGNSKWMATFVQSAGFPILLPLYFIFTPHAKSTNININIDSSKKTKPKFSIIVSLYIFFGLLLAGDNLMYSNGLLYLSLSTYSLLCATQLAFNAVFSYFLNSQKFTAFIFNSVVLLTISSALLAINNDSDDSTNLPKDKRVLGFVFTLGASITFSLYLSLVQLSFDKVIKSETFSVILDMQFYPSFVATCACVVGLFASGEWKSLNKEMKEYELGKVSYIMTLFWIAVTWQVSSIGMLGLVLDVSSLFSNVINTVVLPVGPILAVIFFHDKINGVKFIALMLAIWGFLSYIYQHYLDDKKAKANKTHLHEVSRGEVEIC*