Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257000 | XP_024637044.1 | 88.189 | 381 | 14 | 2 | 1 | 350 | 1 | 381 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257000 | sp|O49725|PUP10_ARATH | 56.325 | 332 | 132 | 4 | 16 | 346 | 56 | 375 | 2.15e-118 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257000 | A0A396IJN7 | 88.189 | 381 | 14 | 2 | 1 | 350 | 1 | 381 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1257000 | Msa1297840 | 0.957016 | 7.477666e-115 | -8.615850e-47 |
| Msa1205780 | Msa1257000 | 0.946488 | 4.192722e-105 | -8.615850e-47 |
| Msa1205820 | Msa1257000 | 0.952815 | 1.070988e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257000 | MtrunA17_Chr4g0055041 | 88.189 | 381 | 14 | 2 | 1 | 350 | 1 | 381 | 0.0 | 654 |
| Msa1257000 | MtrunA17_Chr2g0283381 | 65.165 | 333 | 112 | 2 | 17 | 349 | 54 | 382 | 9.24e-151 | 429 |
| Msa1257000 | MtrunA17_Chr7g0249781 | 57.402 | 331 | 129 | 4 | 17 | 343 | 41 | 363 | 1.09e-127 | 370 |
| Msa1257000 | MtrunA17_Chr3g0102091 | 51.976 | 329 | 154 | 2 | 17 | 344 | 59 | 384 | 5.55e-116 | 341 |
| Msa1257000 | MtrunA17_Chr5g0426921 | 34.545 | 330 | 208 | 3 | 17 | 341 | 32 | 358 | 1.03e-57 | 191 |
| Msa1257000 | MtrunA17_Chr3g0132551 | 31.871 | 342 | 217 | 5 | 17 | 345 | 29 | 367 | 2.26e-57 | 190 |
| Msa1257000 | MtrunA17_Chr6g0483671 | 51.299 | 154 | 75 | 0 | 177 | 330 | 3 | 156 | 4.84e-54 | 175 |
| Msa1257000 | MtrunA17_Chr8g0346091 | 32.808 | 317 | 192 | 3 | 21 | 332 | 69 | 369 | 1.93e-51 | 175 |
| Msa1257000 | MtrunA17_Chr3g0132561 | 29.032 | 341 | 191 | 7 | 17 | 346 | 28 | 328 | 1.80e-44 | 155 |
| Msa1257000 | MtrunA17_Chr2g0296491 | 34.202 | 307 | 186 | 6 | 17 | 320 | 83 | 376 | 3.37e-44 | 156 |
| Msa1257000 | MtrunA17_Chr2g0296481 | 33.333 | 324 | 195 | 7 | 26 | 343 | 72 | 380 | 1.88e-40 | 146 |
| Msa1257000 | MtrunA17_Chr2g0313931 | 50.420 | 119 | 51 | 3 | 17 | 135 | 44 | 154 | 1.01e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257000 | AT4G18210.1 | 56.325 | 332 | 132 | 4 | 16 | 346 | 56 | 375 | 2.18e-119 | 350 |
| Msa1257000 | AT4G18220.1 | 54.627 | 335 | 143 | 3 | 16 | 348 | 56 | 383 | 2.79e-118 | 347 |
| Msa1257000 | AT1G44750.1 | 52.252 | 333 | 148 | 2 | 16 | 348 | 55 | 376 | 2.71e-115 | 339 |
| Msa1257000 | AT1G44750.6 | 52.252 | 333 | 148 | 2 | 16 | 348 | 43 | 364 | 2.74e-115 | 339 |
| Msa1257000 | AT1G44750.2 | 52.252 | 333 | 148 | 2 | 16 | 348 | 43 | 364 | 2.74e-115 | 339 |
| Msa1257000 | AT1G44750.7 | 56.767 | 266 | 112 | 1 | 83 | 348 | 38 | 300 | 5.30e-104 | 308 |
| Msa1257000 | AT1G44750.5 | 56.767 | 266 | 112 | 1 | 83 | 348 | 38 | 300 | 5.30e-104 | 308 |
| Msa1257000 | AT1G44750.4 | 56.767 | 266 | 112 | 1 | 83 | 348 | 38 | 300 | 5.30e-104 | 308 |
| Msa1257000 | AT1G44750.8 | 56.767 | 266 | 112 | 1 | 83 | 348 | 38 | 300 | 5.30e-104 | 308 |
| Msa1257000 | AT1G44750.3 | 56.767 | 266 | 112 | 1 | 83 | 348 | 38 | 300 | 5.30e-104 | 308 |
| Msa1257000 | AT4G18195.1 | 51.026 | 341 | 154 | 3 | 16 | 349 | 57 | 391 | 6.99e-100 | 301 |
| Msa1257000 | AT4G18205.1 | 50.000 | 320 | 155 | 2 | 18 | 337 | 53 | 367 | 2.41e-99 | 299 |
| Msa1257000 | AT4G18190.1 | 51.077 | 325 | 150 | 2 | 16 | 336 | 47 | 366 | 8.19e-99 | 298 |
| Msa1257000 | AT4G08700.1 | 48.012 | 327 | 157 | 3 | 16 | 341 | 47 | 361 | 4.08e-98 | 295 |
| Msa1257000 | AT4G18197.1 | 48.598 | 321 | 158 | 2 | 18 | 337 | 56 | 370 | 5.32e-95 | 288 |
| Msa1257000 | AT5G41160.1 | 47.401 | 327 | 162 | 3 | 16 | 341 | 47 | 364 | 2.47e-93 | 283 |
| Msa1257000 | AT2G33750.2 | 37.082 | 329 | 198 | 2 | 17 | 342 | 18 | 340 | 2.70e-71 | 226 |
| Msa1257000 | AT2G33750.1 | 35.882 | 340 | 198 | 3 | 17 | 342 | 18 | 351 | 8.63e-68 | 217 |
| Msa1257000 | AT1G28220.1 | 34.688 | 320 | 198 | 5 | 17 | 331 | 16 | 329 | 9.27e-68 | 217 |
| Msa1257000 | AT1G28230.1 | 38.700 | 323 | 186 | 5 | 17 | 331 | 16 | 334 | 2.04e-65 | 211 |
| Msa1257000 | AT1G57980.1 | 34.091 | 308 | 178 | 6 | 37 | 331 | 85 | 380 | 3.12e-42 | 151 |
| Msa1257000 | AT1G57943.2 | 33.234 | 337 | 191 | 11 | 26 | 346 | 74 | 392 | 8.60e-41 | 147 |
| Msa1257000 | AT1G57943.1 | 33.234 | 337 | 191 | 11 | 26 | 346 | 75 | 393 | 9.05e-41 | 147 |
| Msa1257000 | AT1G57990.1 | 31.373 | 306 | 189 | 5 | 37 | 331 | 81 | 376 | 1.25e-40 | 147 |
| Msa1257000 | AT1G30840.2 | 33.871 | 310 | 191 | 5 | 17 | 323 | 38 | 336 | 3.06e-37 | 138 |
| Msa1257000 | AT1G30840.1 | 33.871 | 310 | 191 | 5 | 17 | 323 | 38 | 336 | 3.06e-37 | 138 |
| Msa1257000 | AT2G24220.1 | 32.450 | 302 | 185 | 2 | 21 | 318 | 54 | 340 | 2.02e-35 | 132 |
| Msa1257000 | AT2G24220.2 | 32.450 | 302 | 185 | 2 | 21 | 318 | 72 | 358 | 2.42e-35 | 132 |
| Msa1257000 | AT1G19770.1 | 30.792 | 341 | 204 | 7 | 17 | 332 | 59 | 392 | 7.55e-35 | 132 |
| Msa1257000 | AT1G09860.1 | 32.286 | 350 | 197 | 11 | 16 | 338 | 41 | 377 | 2.00e-33 | 127 |
| Msa1257000 | AT1G47603.1 | 31.594 | 345 | 200 | 9 | 11 | 333 | 53 | 383 | 2.11e-32 | 125 |
| Msa1257000 | AT1G75470.1 | 31.839 | 223 | 139 | 4 | 113 | 323 | 151 | 372 | 5.01e-23 | 99.4 |
Find 74 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTACTCGCTTATCTTT+AGG | 0.253149 | 8_2:+57316999 | None:intergenic |
| TAGCCTTGATGTTAGCAATA+TGG | 0.260377 | 8_2:-57316572 | Msa1257000:CDS |
| ACAAAGGTGGTAATAGTAAA+TGG | 0.269720 | 8_2:-57317409 | Msa1257000:CDS |
| GTATCTTCCATTGGTATGTT+AGG | 0.270589 | 8_2:-57316711 | Msa1257000:CDS |
| CATATATAATGACTTTGTTT+TGG | 0.282504 | 8_2:-57316752 | Msa1257000:CDS |
| ATATGAATGCTGTGAACTTT+TGG | 0.301822 | 8_2:+57317099 | None:intergenic |
| TTCTCTAATGGAGATTGTTC+AGG | 0.316124 | 8_2:-57319033 | None:intergenic |
| GCTACTTGTGCTTGTGTTGT+TGG | 0.342888 | 8_2:-57316843 | Msa1257000:CDS |
| AGCCTTGATGTTAGCAATAT+GGG | 0.344380 | 8_2:-57316571 | Msa1257000:CDS |
| TCAATCTACAGCCAATCTAT+TGG | 0.360532 | 8_2:-57317447 | Msa1257000:CDS |
| GGAGATGAAGGAATATGAAC+TGG | 0.366582 | 8_2:-57316784 | Msa1257000:CDS |
| CTCATCTTCATGAGGTTTCA+AGG | 0.373710 | 8_2:-57316488 | Msa1257000:CDS |
| AAATAGAGTGGAAGTAGTAT+AGG | 0.379492 | 8_2:+57317356 | None:intergenic |
| GCAACATTTGTTCAATCAGC+TGG | 0.388372 | 8_2:-57317383 | Msa1257000:CDS |
| TTCTTCCATGACAAAATCAA+TGG | 0.388872 | 8_2:-57316606 | Msa1257000:CDS |
| CTACTTGTGCTTGTGTTGTT+GGG | 0.389251 | 8_2:-57316842 | Msa1257000:CDS |
| CCTAAAGATAAGCGAGTACT+TGG | 0.390852 | 8_2:-57316999 | Msa1257000:CDS |
| AATAGAGTGGAAGTAGTATA+GGG | 0.393496 | 8_2:+57317357 | None:intergenic |
| AGAATGGAAAAGTTTGAATA+AGG | 0.399319 | 8_2:-57316805 | Msa1257000:CDS |
| ATCATCAGAATCGTTATTGA+TGG | 0.404902 | 8_2:+57317034 | None:intergenic |
| CAATCTACAGCCAATCTATT+GGG | 0.406639 | 8_2:-57317446 | Msa1257000:CDS |
| GCACAAGTAGCGACGAAAGA+AGG | 0.407661 | 8_2:+57316855 | None:intergenic |
| TAGATAATGTTGATAAATAT+AGG | 0.416324 | 8_2:+57316539 | None:intergenic |
| GTAAGAAAATACTGCATTGA+AGG | 0.434994 | 8_2:+57317133 | None:intergenic |
| TATCTTCCATTGGTATGTTA+GGG | 0.435640 | 8_2:-57316710 | Msa1257000:CDS |
| TCTTCCATGACAAAATCAAT+GGG | 0.440740 | 8_2:-57316605 | Msa1257000:CDS |
| CTTGGATTCGTCTTCACCCT+TGG | 0.444186 | 8_2:-57316981 | Msa1257000:CDS |
| AATGATGGAAAATTGTGGTT+TGG | 0.446240 | 8_2:+57317271 | None:intergenic |
| ATCAATATTGACATTTATGT+TGG | 0.461848 | 8_2:+57317307 | None:intergenic |
| GGTTGTTTGCAAGTGGAGAA+TGG | 0.463564 | 8_2:-57316821 | Msa1257000:CDS |
| GAAGAAAATAACAGCAAGGA+TGG | 0.477070 | 8_2:+57316623 | None:intergenic |
| CAGTAGTTGTAGTTGATTGT+GGG | 0.484203 | 8_2:+57319003 | None:intergenic |
| ATATAGTCTTCCCAATAGAT+TGG | 0.485777 | 8_2:+57317436 | None:intergenic |
| TCATGAGGTTTCAAGGGGTG+AGG | 0.500851 | 8_2:-57316481 | Msa1257000:CDS |
| TGTTGCACATAGTAAAGAAT+AGG | 0.504800 | 8_2:+57317163 | None:intergenic |
| ATCGTTATTGATGGCAAGTA+GGG | 0.507986 | 8_2:+57317043 | None:intergenic |
| AAGTTTGAATAAGGAGATGA+AGG | 0.509849 | 8_2:-57316796 | Msa1257000:CDS |
| TGAAAGATATAGAAGTCCAT+TGG | 0.520330 | 8_2:+57317193 | None:intergenic |
| AAACTGCATGTCCAAGATAA+CGG | 0.522371 | 8_2:+57316881 | None:intergenic |
| TCATCTTCATGAGGTTTCAA+GGG | 0.524727 | 8_2:-57316487 | Msa1257000:CDS |
| GCAGTAGTTGTAGTTGATTG+TGG | 0.527047 | 8_2:+57319002 | None:intergenic |
| ACAGCAAGGATGGGACCTAC+AGG | 0.527733 | 8_2:+57316633 | None:intergenic |
| CATGTCCAAGATAACGGAAA+AGG | 0.529515 | 8_2:+57316887 | None:intergenic |
| CACAAGTAGCGACGAAAGAA+GGG | 0.536717 | 8_2:+57316856 | None:intergenic |
| GACAATTTGATGTATTCCAA+TGG | 0.539300 | 8_2:-57317209 | Msa1257000:CDS |
| AATCGTTATTGATGGCAAGT+AGG | 0.540072 | 8_2:+57317042 | None:intergenic |
| TATGTAAAGAGAAACAATGA+TGG | 0.542651 | 8_2:+57317256 | None:intergenic |
| GAAACAATGATGGAAAATTG+TGG | 0.549644 | 8_2:+57317266 | None:intergenic |
| GTTGTTGGGTTGTTTGCAAG+TGG | 0.551141 | 8_2:-57316828 | Msa1257000:CDS |
| TCCCCATATTGCTAACATCA+AGG | 0.553521 | 8_2:+57316569 | None:intergenic |
| CAATCAACTACAACTACTGC+AGG | 0.567854 | 8_2:-57318999 | Msa1257000:intron |
| AACTAACCCTAACATACCAA+TGG | 0.573549 | 8_2:+57316704 | None:intergenic |
| ACATGGCAAGTATCTTCCAT+TGG | 0.573996 | 8_2:-57316720 | Msa1257000:CDS |
| TGTCAAAAGAAAGCTGCACA+AGG | 0.574825 | 8_2:+57316928 | None:intergenic |
| AGGTGGTAATAGTAAATGGA+TGG | 0.581435 | 8_2:-57317405 | Msa1257000:CDS |
| GAAGGAATATGAACTGGGAA+AGG | 0.585101 | 8_2:-57316778 | Msa1257000:CDS |
| GTGAGGTTGAAATTTGCTGA+TGG | 0.585220 | 8_2:-57316464 | None:intergenic |
| TGCACATAGTAAAGAATAGG+TGG | 0.594060 | 8_2:+57317166 | None:intergenic |
| GAGATGAAGGAATATGAACT+GGG | 0.604093 | 8_2:-57316783 | Msa1257000:CDS |
| AAATGTAATAGATGCACCAA+GGG | 0.606332 | 8_2:+57316965 | None:intergenic |
| GCCTTGATGTTAGCAATATG+GGG | 0.607447 | 8_2:-57316570 | Msa1257000:CDS |
| AAGAAAATAACAGCAAGGAT+GGG | 0.616093 | 8_2:+57316624 | None:intergenic |
| CATCTTCATGAGGTTTCAAG+GGG | 0.629974 | 8_2:-57316486 | Msa1257000:CDS |
| CATGGAAGAAAATAACAGCA+AGG | 0.631020 | 8_2:+57316619 | None:intergenic |
| GGAAGACTATATTATGACAA+AGG | 0.632275 | 8_2:-57317425 | Msa1257000:CDS |
| AATACAGTGGTACTTCCTGT+AGG | 0.636862 | 8_2:-57316648 | Msa1257000:CDS |
| GAATAAAACTCATCTTCATG+AGG | 0.640768 | 8_2:-57316496 | Msa1257000:CDS |
| AGACTATATTATGACAAAGG+TGG | 0.646613 | 8_2:-57317422 | Msa1257000:CDS |
| CTCAAATGTAATAAATACAG+TGG | 0.647972 | 8_2:-57316661 | Msa1257000:CDS |
| AAAATGTAATAGATGCACCA+AGG | 0.652741 | 8_2:+57316964 | None:intergenic |
| ATGTTGGTAGATTTAGCATG+TGG | 0.652808 | 8_2:+57317323 | None:intergenic |
| CTTCCATGACAAAATCAATG+GGG | 0.656091 | 8_2:-57316604 | Msa1257000:CDS |
| GGTGTGAAGATAAAATAGAG+TGG | 0.659598 | 8_2:+57317344 | None:intergenic |
| GTCAAAAGAAAGCTGCACAA+GGG | 0.669271 | 8_2:+57316929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTTAAAAAATATAG+AGG | + | chr8_2:57316791-57316810 | None:intergenic | 10.0% |
| !!! | AGTATAAAAATTTACTTTTG+CGG | + | chr8_2:57317548-57317567 | None:intergenic | 15.0% |
| !!! | TGAGTGATATTTTTTTTTTT+TGG | - | chr8_2:57317767-57317786 | Msa1257000:intron | 15.0% |
| !!! | TAGATAATGTTGATAAATAT+AGG | + | chr8_2:57318957-57318976 | None:intergenic | 15.0% |
| !! | ATCTTGATTGTAGTATTTAA+AGG | - | chr8_2:57316687-57316706 | Msa1257000:CDS | 20.0% |
| !!! | ATTTTAGACCAAATATTTGT+TGG | - | chr8_2:57316905-57316924 | Msa1257000:CDS | 20.0% |
| !! | TTGTAAAATGATGAAAATAG+AGG | - | chr8_2:57316969-57316988 | Msa1257000:CDS | 20.0% |
| !!! | ATAATTTTCAATAGTTAGGA+AGG | + | chr8_2:57317075-57317094 | None:intergenic | 20.0% |
| !! | TCCTAACTATTGAAAATTAT+TGG | - | chr8_2:57317075-57317094 | Msa1257000:CDS | 20.0% |
| !! | GAAATTCATAACAAGAAATT+GGG | + | chr8_2:57317286-57317305 | None:intergenic | 20.0% |
| !! | AGAAATTCATAACAAGAAAT+TGG | + | chr8_2:57317287-57317306 | None:intergenic | 20.0% |
| !! | AAAGATTAAGAGATTTCAAA+TGG | - | chr8_2:57317337-57317356 | Msa1257000:CDS | 20.0% |
| !! | CTCATACACAATAAAATAAT+AGG | + | chr8_2:57317751-57317770 | None:intergenic | 20.0% |
| !! | AAAAATTACATGTTACACTT+TGG | - | chr8_2:57317819-57317838 | Msa1257000:intron | 20.0% |
| !! | ATCAATATTGACATTTATGT+TGG | + | chr8_2:57318189-57318208 | None:intergenic | 20.0% |
| !!! | GTTTCTCTTTACATATTTTT+TGG | - | chr8_2:57318245-57318264 | Msa1257000:intron | 20.0% |
| !!! | CATATATAATGACTTTGTTT+TGG | - | chr8_2:57318741-57318760 | Msa1257000:intron | 20.0% |
| ! | TCCATAAAATGGTGAAAATA+GGG | + | chr8_2:57316732-57316751 | None:intergenic | 25.0% |
| ! | ATCCATAAAATGGTGAAAAT+AGG | + | chr8_2:57316733-57316752 | None:intergenic | 25.0% |
| !!! | CATTGACATGTGATTTTTTT+TGG | + | chr8_2:57317024-57317043 | None:intergenic | 25.0% |
| ! | CAAAAAAAATCACATGTCAA+TGG | - | chr8_2:57317022-57317041 | Msa1257000:CDS | 25.0% |
| !! | GCCAATAATTTTCAATAGTT+AGG | + | chr8_2:57317079-57317098 | None:intergenic | 25.0% |
| !!! | CAAAAATATTCGGTTTTTTG+CGG | + | chr8_2:57317437-57317456 | None:intergenic | 25.0% |
| ! | CAAACACATCCAAAAATATT+CGG | + | chr8_2:57317447-57317466 | None:intergenic | 25.0% |
| !!! | AAAAATTTACTTTTGCGGTT+CGG | + | chr8_2:57317543-57317562 | None:intergenic | 25.0% |
| ! | CAAATATATGCGGTTTAATT+TGG | + | chr8_2:57317861-57317880 | None:intergenic | 25.0% |
| ! | CAAATTAAACCGCATATATT+TGG | - | chr8_2:57317859-57317878 | Msa1257000:intron | 25.0% |
| !!! | ATGTGCTTTTTATTTTGGAT+CGG | - | chr8_2:57317935-57317954 | Msa1257000:intron | 25.0% |
| !! | TCTCTACATAGTATTTCTTT+TGG | - | chr8_2:57318019-57318038 | Msa1257000:intron | 25.0% |
| !! | TACATAGTATTTCTTTTGGT+AGG | - | chr8_2:57318023-57318042 | Msa1257000:intron | 25.0% |
| !!! | AAATTGTGGTTTGGTTTTTT+TGG | + | chr8_2:57318216-57318235 | None:intergenic | 25.0% |
| ! | TATGTAAAGAGAAACAATGA+TGG | + | chr8_2:57318240-57318259 | None:intergenic | 25.0% |
| ! | AGAATGGAAAAGTTTGAATA+AGG | - | chr8_2:57318688-57318707 | Msa1257000:intron | 25.0% |
| ! | CTCAAATGTAATAAATACAG+TGG | - | chr8_2:57318832-57318851 | Msa1257000:intron | 25.0% |
| ! | TCCCTATTTTCACCATTTTA+TGG | - | chr8_2:57316728-57316747 | Msa1257000:CDS | 30.0% |
| TACTGTCGCGTTATAAAATA+GGG | + | chr8_2:57316763-57316782 | None:intergenic | 30.0% | |
| ATACTGTCGCGTTATAAAAT+AGG | + | chr8_2:57316764-57316783 | None:intergenic | 30.0% | |
| ! | ATTTTATAACGCGACAGTAT+TGG | - | chr8_2:57316764-57316783 | Msa1257000:CDS | 30.0% |
| ! | TTAGACCAAATATTTGTTGG+AGG | - | chr8_2:57316908-57316927 | Msa1257000:CDS | 30.0% |
| ! | TAGACCAAATATTTGTTGGA+GGG | - | chr8_2:57316909-57316928 | Msa1257000:CDS | 30.0% |
| !!! | ACCGTCACATTTTAAAATAG+AGG | - | chr8_2:57316938-57316957 | Msa1257000:CDS | 30.0% |
| !!! | CCCTCTATTTTAAAATGTGA+CGG | + | chr8_2:57316942-57316961 | None:intergenic | 30.0% |
| !!! | CCGTCACATTTTAAAATAGA+GGG | - | chr8_2:57316939-57316958 | Msa1257000:CDS | 30.0% |
| !!! | CGTCACATTTTAAAATAGAG+GGG | - | chr8_2:57316940-57316959 | Msa1257000:CDS | 30.0% |
| ! | AAGACATCAAAACTTGCTTT+AGG | - | chr8_2:57317049-57317068 | Msa1257000:CDS | 30.0% |
| TCAGTAGTGAAAGATTAACA+TGG | + | chr8_2:57317101-57317120 | None:intergenic | 30.0% | |
| ! | TCTTGTTATGAATTTCTCAG+AGG | - | chr8_2:57317290-57317309 | Msa1257000:CDS | 30.0% |
| TCTCTTAATCTTTGATGTTG+AGG | + | chr8_2:57317330-57317349 | None:intergenic | 30.0% | |
| GATTAAGAGATTTCAAATGG+TGG | - | chr8_2:57317340-57317359 | Msa1257000:CDS | 30.0% | |
| !!! | TTTGCGGTTTTATTTTGGAT+CGG | + | chr8_2:57317393-57317412 | None:intergenic | 30.0% |
| ! | CGCAAAAAACCGAATATTTT+TGG | - | chr8_2:57317435-57317454 | Msa1257000:CDS | 30.0% |
| !!! | CGAATATTTTTGGATGTGTT+TGG | - | chr8_2:57317445-57317464 | Msa1257000:CDS | 30.0% |
| !!! | GTTTAATTTGGATCGGTTTT+TGG | + | chr8_2:57317849-57317868 | None:intergenic | 30.0% |
| !! | ATATGCGGTTTAATTTGGAT+CGG | + | chr8_2:57317856-57317875 | None:intergenic | 30.0% |
| TAAACCGCATATATTTGGAT+CGG | - | chr8_2:57317864-57317883 | Msa1257000:intron | 30.0% | |
| ! | TCCAAAATAAAAAGCACATG+CGG | + | chr8_2:57317934-57317953 | None:intergenic | 30.0% |
| ATATAGTCTTCCCAATAGAT+TGG | + | chr8_2:57318060-57318079 | None:intergenic | 30.0% | |
| GGAAGACTATATTATGACAA+AGG | - | chr8_2:57318068-57318087 | Msa1257000:intron | 30.0% | |
| AGACTATATTATGACAAAGG+TGG | - | chr8_2:57318071-57318090 | Msa1257000:intron | 30.0% | |
| ACAAAGGTGGTAATAGTAAA+TGG | - | chr8_2:57318084-57318103 | Msa1257000:intron | 30.0% | |
| AATAGAGTGGAAGTAGTATA+GGG | + | chr8_2:57318139-57318158 | None:intergenic | 30.0% | |
| AAATAGAGTGGAAGTAGTAT+AGG | + | chr8_2:57318140-57318159 | None:intergenic | 30.0% | |
| ! | AATGATGGAAAATTGTGGTT+TGG | + | chr8_2:57318225-57318244 | None:intergenic | 30.0% |
| ! | GAAACAATGATGGAAAATTG+TGG | + | chr8_2:57318230-57318249 | None:intergenic | 30.0% |
| !!! | TTTTTTGGCTTACTTTTAGC+AGG | - | chr8_2:57318260-57318279 | Msa1257000:intron | 30.0% |
| !!! | TTTTTGGCTTACTTTTAGCA+GGG | - | chr8_2:57318261-57318280 | Msa1257000:intron | 30.0% |
| GACAATTTGATGTATTCCAA+TGG | - | chr8_2:57318284-57318303 | Msa1257000:intron | 30.0% | |
| TGAAAGATATAGAAGTCCAT+TGG | + | chr8_2:57318303-57318322 | None:intergenic | 30.0% | |
| TGTTGCACATAGTAAAGAAT+AGG | + | chr8_2:57318333-57318352 | None:intergenic | 30.0% | |
| GTAAGAAAATACTGCATTGA+AGG | + | chr8_2:57318363-57318382 | None:intergenic | 30.0% | |
| ! | TATGAATGCTGTGAACTTTT+GGG | + | chr8_2:57318396-57318415 | None:intergenic | 30.0% |
| ! | ATATGAATGCTGTGAACTTT+TGG | + | chr8_2:57318397-57318416 | None:intergenic | 30.0% |
| ATCATCAGAATCGTTATTGA+TGG | + | chr8_2:57318462-57318481 | None:intergenic | 30.0% | |
| AAATGTAATAGATGCACCAA+GGG | + | chr8_2:57318531-57318550 | None:intergenic | 30.0% | |
| AAAATGTAATAGATGCACCA+AGG | + | chr8_2:57318532-57318551 | None:intergenic | 30.0% | |
| AAGTTTGAATAAGGAGATGA+AGG | - | chr8_2:57318697-57318716 | Msa1257000:intron | 30.0% | |
| TATCTTCCATTGGTATGTTA+GGG | - | chr8_2:57318783-57318802 | Msa1257000:intron | 30.0% | |
| AAGAAAATAACAGCAAGGAT+GGG | + | chr8_2:57318872-57318891 | None:intergenic | 30.0% | |
| TTCTTCCATGACAAAATCAA+TGG | - | chr8_2:57318887-57318906 | Msa1257000:intron | 30.0% | |
| TCTTCCATGACAAAATCAAT+GGG | - | chr8_2:57318888-57318907 | Msa1257000:intron | 30.0% | |
| GAATAAAACTCATCTTCATG+AGG | - | chr8_2:57318997-57319016 | Msa1257000:intron | 30.0% | |
| CAGTAGTTGTAGTTGATTGT+GGG | + | chr8_2:57316493-57316512 | None:intergenic | 35.0% | |
| ! | TCATGTCTCTCAAAGTTGAT+AGG | - | chr8_2:57316654-57316673 | Msa1257000:CDS | 35.0% |
| ! | TAAAGGCTCAATTGCAGTTT+TGG | - | chr8_2:57316704-57316723 | Msa1257000:CDS | 35.0% |
| GGGGAACTAAATCCATAAAA+TGG | + | chr8_2:57316743-57316762 | None:intergenic | 35.0% | |
| ACTGTCGCGTTATAAAATAG+GGG | + | chr8_2:57316762-57316781 | None:intergenic | 35.0% | |
| TGATCCCTCCAACAAATATT+TGG | + | chr8_2:57316916-57316935 | None:intergenic | 35.0% | |
| ! | ACACAAAGTTGGGTCAATTT+TGG | + | chr8_2:57317166-57317185 | None:intergenic | 35.0% |
| AACGATGAACACACAAAGTT+GGG | + | chr8_2:57317176-57317195 | None:intergenic | 35.0% | |
| AAACGATGAACACACAAAGT+TGG | + | chr8_2:57317177-57317196 | None:intergenic | 35.0% | |
| TAGAACAATGAACACCAGTA+CGG | + | chr8_2:57317230-57317249 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTTTGGATCGGTT+TGG | + | chr8_2:57317388-57317407 | None:intergenic | 35.0% |
| !!! | ATCGGTTTGCGGTTTTATTT+TGG | + | chr8_2:57317398-57317417 | None:intergenic | 35.0% |
| !!! | GGTTTTCGGTTTTTTTGGAT+CGG | + | chr8_2:57317416-57317435 | None:intergenic | 35.0% |
| ! | TTTGCGGTTTTCGGTTTTTT+TGG | + | chr8_2:57317421-57317440 | None:intergenic | 35.0% |
| !!! | ATTCGGTTTTTTGCGGTTTT+CGG | + | chr8_2:57317430-57317449 | None:intergenic | 35.0% |
| !! | GATGTGTTTGGATGTTGTTT+TGG | - | chr8_2:57317457-57317476 | Msa1257000:intron | 35.0% |
| TTTGGAAAAACCGCTATGAT+CGG | - | chr8_2:57317475-57317494 | Msa1257000:intron | 35.0% | |
| ! | AATAAAAAGCACATGCGGTT+CGG | + | chr8_2:57317929-57317948 | None:intergenic | 35.0% |
| !! | ACCGCATGTGCTTTTTATTT+TGG | - | chr8_2:57317930-57317949 | Msa1257000:intron | 35.0% |
| TAGAGAGATACACGAAACTA+GGG | + | chr8_2:57318005-57318024 | None:intergenic | 35.0% | |
| TCAATCTACAGCCAATCTAT+TGG | - | chr8_2:57318046-57318065 | Msa1257000:intron | 35.0% | |
| CAATCTACAGCCAATCTATT+GGG | - | chr8_2:57318047-57318066 | Msa1257000:intron | 35.0% | |
| AGGTGGTAATAGTAAATGGA+TGG | - | chr8_2:57318088-57318107 | Msa1257000:intron | 35.0% | |
| GGTGTGAAGATAAAATAGAG+TGG | + | chr8_2:57318152-57318171 | None:intergenic | 35.0% | |
| ! | ATGTTGGTAGATTTAGCATG+TGG | + | chr8_2:57318173-57318192 | None:intergenic | 35.0% |
| !!! | TTGTGGTTTGGTTTTTTTGG+AGG | + | chr8_2:57318213-57318232 | None:intergenic | 35.0% |
| !!! | TTTTGGCTTACTTTTAGCAG+GGG | - | chr8_2:57318262-57318281 | Msa1257000:intron | 35.0% |
| TGCACATAGTAAAGAATAGG+TGG | + | chr8_2:57318330-57318349 | None:intergenic | 35.0% | |
| !! | CTGTGAACTTTTGGGAATTA+AGG | + | chr8_2:57318388-57318407 | None:intergenic | 35.0% |
| ! | ATCGTTATTGATGGCAAGTA+GGG | + | chr8_2:57318453-57318472 | None:intergenic | 35.0% |
| ! | AATCGTTATTGATGGCAAGT+AGG | + | chr8_2:57318454-57318473 | None:intergenic | 35.0% |
| ! | TGAAACCTTTTCCGTTATCT+TGG | - | chr8_2:57318601-57318620 | Msa1257000:intron | 35.0% |
| AAACTGCATGTCCAAGATAA+CGG | + | chr8_2:57318615-57318634 | None:intergenic | 35.0% | |
| GAGATGAAGGAATATGAACT+GGG | - | chr8_2:57318710-57318729 | Msa1257000:intron | 35.0% | |
| GTATCTTCCATTGGTATGTT+AGG | - | chr8_2:57318782-57318801 | Msa1257000:intron | 35.0% | |
| AACTAACCCTAACATACCAA+TGG | + | chr8_2:57318792-57318811 | None:intergenic | 35.0% | |
| GAAGAAAATAACAGCAAGGA+TGG | + | chr8_2:57318873-57318892 | None:intergenic | 35.0% | |
| CATGGAAGAAAATAACAGCA+AGG | + | chr8_2:57318877-57318896 | None:intergenic | 35.0% | |
| CTTCCATGACAAAATCAATG+GGG | - | chr8_2:57318889-57318908 | Msa1257000:intron | 35.0% | |
| ! | TAGCCTTGATGTTAGCAATA+TGG | - | chr8_2:57318921-57318940 | Msa1257000:intron | 35.0% |
| AGCCTTGATGTTAGCAATAT+GGG | - | chr8_2:57318922-57318941 | Msa1257000:intron | 35.0% | |
| TCTAGATGACAAAAAAGCCA+AGG | - | chr8_2:57318973-57318992 | Msa1257000:intron | 35.0% | |
| !!! | AAGATGAGTTTTATTCGCCT+TGG | + | chr8_2:57318993-57319012 | None:intergenic | 35.0% |
| TCATCTTCATGAGGTTTCAA+GGG | - | chr8_2:57319006-57319025 | Msa1257000:CDS | 35.0% | |
| GCAGTAGTTGTAGTTGATTG+TGG | + | chr8_2:57316494-57316513 | None:intergenic | 40.0% | |
| CAATCAACTACAACTACTGC+AGG | - | chr8_2:57316494-57316513 | Msa1257000:CDS | 40.0% | |
| AACTACAACTACTGCAGGTT+AGG | - | chr8_2:57316499-57316518 | Msa1257000:CDS | 40.0% | |
| TTCAAATGGTGGTTTCGTGT+AGG | - | chr8_2:57317351-57317370 | Msa1257000:CDS | 40.0% | |
| TCAAATGGTGGTTTCGTGTA+GGG | - | chr8_2:57317352-57317371 | Msa1257000:CDS | 40.0% | |
| !!! | GGTTTTTTTGGATCGGTTTG+CGG | + | chr8_2:57317409-57317428 | None:intergenic | 40.0% |
| AAAAACCGCTATGATCGGAT+CGG | - | chr8_2:57317480-57317499 | Msa1257000:intron | 40.0% | |
| !!! | TTTACTTTTGCGGTTCGGTT+TGG | + | chr8_2:57317538-57317557 | None:intergenic | 40.0% |
| CGATCCGATCCAAATATATG+CGG | + | chr8_2:57317871-57317890 | None:intergenic | 40.0% | |
| CGCATATATTTGGATCGGAT+CGG | - | chr8_2:57317869-57317888 | Msa1257000:intron | 40.0% | |
| ATATTTGGATCGGATCGGTT+CGG | - | chr8_2:57317874-57317893 | Msa1257000:intron | 40.0% | |
| AGAGAGATACACGAAACTAG+GGG | + | chr8_2:57318004-57318023 | None:intergenic | 40.0% | |
| GTAGAGAGATACACGAAACT+AGG | + | chr8_2:57318006-57318025 | None:intergenic | 40.0% | |
| GCAACATTTGTTCAATCAGC+TGG | - | chr8_2:57318110-57318129 | Msa1257000:intron | 40.0% | |
| CCAAGTACTCGCTTATCTTT+AGG | + | chr8_2:57318497-57318516 | None:intergenic | 40.0% | |
| CCTAAAGATAAGCGAGTACT+TGG | - | chr8_2:57318494-57318513 | Msa1257000:intron | 40.0% | |
| GTCAAAAGAAAGCTGCACAA+GGG | + | chr8_2:57318567-57318586 | None:intergenic | 40.0% | |
| TGTCAAAAGAAAGCTGCACA+AGG | + | chr8_2:57318568-57318587 | None:intergenic | 40.0% | |
| !! | CATGTCCAAGATAACGGAAA+AGG | + | chr8_2:57318609-57318628 | None:intergenic | 40.0% |
| ! | CTACTTGTGCTTGTGTTGTT+GGG | - | chr8_2:57318651-57318670 | Msa1257000:intron | 40.0% |
| GGAGATGAAGGAATATGAAC+TGG | - | chr8_2:57318709-57318728 | Msa1257000:intron | 40.0% | |
| GAAGGAATATGAACTGGGAA+AGG | - | chr8_2:57318715-57318734 | Msa1257000:intron | 40.0% | |
| !! | TGTTTTGGATTGCTGTGACA+TGG | - | chr8_2:57318756-57318775 | Msa1257000:intron | 40.0% |
| ACATGGCAAGTATCTTCCAT+TGG | - | chr8_2:57318773-57318792 | Msa1257000:intron | 40.0% | |
| AATACAGTGGTACTTCCTGT+AGG | - | chr8_2:57318845-57318864 | Msa1257000:intron | 40.0% | |
| !!! | TCACCCCATTGATTTTGTCA+TGG | + | chr8_2:57318895-57318914 | None:intergenic | 40.0% |
| GCCTTGATGTTAGCAATATG+GGG | - | chr8_2:57318923-57318942 | Msa1257000:intron | 40.0% | |
| TCCCCATATTGCTAACATCA+AGG | + | chr8_2:57318927-57318946 | None:intergenic | 40.0% | |
| CTCATCTTCATGAGGTTTCA+AGG | - | chr8_2:57319005-57319024 | Msa1257000:CDS | 40.0% | |
| CATCTTCATGAGGTTTCAAG+GGG | - | chr8_2:57319007-57319026 | Msa1257000:CDS | 40.0% | |
| ACTACTGCAGGTTAGGAACA+TGG | - | chr8_2:57316506-57316525 | Msa1257000:CDS | 45.0% | |
| ! | TTTGCTCTTTTGAGCCGTAC+TGG | - | chr8_2:57317213-57317232 | Msa1257000:CDS | 45.0% |
| CAAATGGTGGTTTCGTGTAG+GGG | - | chr8_2:57317353-57317372 | Msa1257000:CDS | 45.0% | |
| GAAAACCGATCCGATCATAG+CGG | + | chr8_2:57317488-57317507 | None:intergenic | 45.0% | |
| !! | GCTATGATCGGATCGGTTTT+CGG | - | chr8_2:57317487-57317506 | Msa1257000:intron | 45.0% |
| !!! | GGTTCGGTTCGGTTTTGAAA+AGG | + | chr8_2:57317517-57317536 | None:intergenic | 45.0% |
| !!! | TTTTGCGGTTCGGTTTGGTT+CGG | + | chr8_2:57317533-57317552 | None:intergenic | 45.0% |
| ACCTCAAAACCGATCCAAAC+CGG | - | chr8_2:57317968-57317987 | Msa1257000:intron | 45.0% | |
| CACAAGTAGCGACGAAAGAA+GGG | + | chr8_2:57318640-57318659 | None:intergenic | 45.0% | |
| GCTACTTGTGCTTGTGTTGT+TGG | - | chr8_2:57318650-57318669 | Msa1257000:intron | 45.0% | |
| ! | GTTGTTGGGTTGTTTGCAAG+TGG | - | chr8_2:57318665-57318684 | Msa1257000:intron | 45.0% |
| GGTTGTTTGCAAGTGGAGAA+TGG | - | chr8_2:57318672-57318691 | Msa1257000:intron | 45.0% | |
| !!! | TATATTTTTTAACTAAAAAT+TGG | - | chr8_2:57316792-57316811 | Msa1257000:CDS | 5.0% |
| AAGACACTACCGTTGCTCTG+CGG | - | chr8_2:57317128-57317147 | Msa1257000:CDS | 50.0% | |
| !! | AAAGCACATGCGGTTCGGTT+CGG | + | chr8_2:57317924-57317943 | None:intergenic | 50.0% |
| !!! | TCCGGTTTGGATCGGTTTTG+AGG | + | chr8_2:57317972-57317991 | None:intergenic | 50.0% |
| CTTGGATTCGTCTTCACCCT+TGG | - | chr8_2:57318512-57318531 | Msa1257000:intron | 50.0% | |
| GCACAAGTAGCGACGAAAGA+AGG | + | chr8_2:57318641-57318660 | None:intergenic | 50.0% | |
| TCATGAGGTTTCAAGGGGTG+AGG | - | chr8_2:57319012-57319031 | Msa1257000:CDS | 50.0% | |
| TGTCTCTGACCGCAGAGCAA+CGG | + | chr8_2:57317140-57317159 | None:intergenic | 55.0% | |
| !! | CGGTTCGGTTTGGTTCGGTT+CGG | + | chr8_2:57317528-57317547 | None:intergenic | 55.0% |
| !! | ACATGCGGTTCGGTTCGGTT+TGG | + | chr8_2:57317919-57317938 | None:intergenic | 55.0% |
| !! | CACGAAACTAGGGGTGTTCG+CGG | + | chr8_2:57317995-57318014 | None:intergenic | 55.0% |
| ACAGCAAGGATGGGACCTAC+AGG | + | chr8_2:57318863-57318882 | None:intergenic | 55.0% | |
| !! | GTTCGCGGTCCGGTTTGGAT+CGG | + | chr8_2:57317980-57317999 | None:intergenic | 60.0% |
| !! | AACTAGGGGTGTTCGCGGTC+CGG | + | chr8_2:57317990-57318009 | None:intergenic | 60.0% |
| ! | GGGGTGTTCGCGGTCCGGTT+TGG | + | chr8_2:57317985-57318004 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 57316467 | 57319048 | 57316467 | ID=Msa1257000;Name=Msa1257000 |
| chr8_2 | mRNA | 57316467 | 57319048 | 57316467 | ID=Msa1257000-mRNA-1;Parent=Msa1257000;Name=Msa1257000-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.5|1|1|2|0|350 |
| chr8_2 | exon | 57319000 | 57319048 | 57319000 | ID=Msa1257000-mRNA-1:exon:17694;Parent=Msa1257000-mRNA-1 |
| chr8_2 | exon | 57316467 | 57317470 | 57316467 | ID=Msa1257000-mRNA-1:exon:17693;Parent=Msa1257000-mRNA-1 |
| chr8_2 | CDS | 57319000 | 57319048 | 57319000 | ID=Msa1257000-mRNA-1:cds;Parent=Msa1257000-mRNA-1 |
| chr8_2 | CDS | 57316467 | 57317470 | 57316467 | ID=Msa1257000-mRNA-1:cds;Parent=Msa1257000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
