Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205900 | KEH16287.1 | 76.012 | 346 | 27 | 6 | 1 | 315 | 1 | 321 | 2.47e-174 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205900 | sp|Q8S3F1|BH020_ARATH | 33.974 | 156 | 82 | 1 | 174 | 308 | 162 | 317 | 2.16e-21 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1205900 | Msa1250440 | 0.857491 | 1.573842e-62 | -8.615850e-47 |
| Msa1205900 | Msa1297460 | 0.866878 | 2.065129e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205900 | MtrunA17_Chr4g0054621 | 76.012 | 346 | 27 | 6 | 1 | 315 | 22 | 342 | 5.52e-178 | 495 |
| Msa1205900 | MtrunA17_Chr4g0054581 | 47.185 | 373 | 122 | 14 | 2 | 315 | 23 | 379 | 1.07e-81 | 252 |
| Msa1205900 | MtrunA17_Chr2g0307131 | 44.944 | 356 | 129 | 15 | 3 | 314 | 23 | 355 | 8.16e-70 | 221 |
| Msa1205900 | MtrunA17_Chr6g0468491 | 44.350 | 354 | 116 | 16 | 3 | 315 | 1 | 314 | 1.05e-69 | 219 |
| Msa1205900 | MtrunA17_Chr2g0307141 | 41.783 | 359 | 144 | 14 | 2 | 315 | 22 | 360 | 1.34e-65 | 210 |
| Msa1205900 | MtrunA17_Chr4g0033281 | 42.353 | 340 | 133 | 9 | 2 | 314 | 22 | 325 | 1.70e-65 | 209 |
| Msa1205900 | MtrunA17_Chr4g0033291 | 43.440 | 343 | 129 | 13 | 2 | 315 | 23 | 329 | 5.38e-65 | 207 |
| Msa1205900 | MtrunA17_Chr4g0033391 | 42.398 | 342 | 122 | 15 | 2 | 313 | 23 | 319 | 3.05e-62 | 200 |
| Msa1205900 | MtrunA17_Chr6g0468461 | 42.462 | 325 | 116 | 15 | 2 | 290 | 22 | 311 | 6.38e-51 | 172 |
| Msa1205900 | MtrunA17_Chr5g0400621 | 36.607 | 336 | 146 | 9 | 11 | 314 | 33 | 333 | 2.20e-40 | 144 |
| Msa1205900 | MtrunA17_Chr7g0225901 | 40.244 | 246 | 81 | 11 | 80 | 290 | 26 | 240 | 3.15e-35 | 128 |
| Msa1205900 | MtrunA17_Chr5g0400641 | 46.565 | 131 | 60 | 2 | 174 | 296 | 28 | 156 | 8.99e-30 | 111 |
| Msa1205900 | MtrunA17_Chr4g0002831 | 40.146 | 137 | 78 | 2 | 172 | 308 | 70 | 202 | 4.97e-27 | 105 |
| Msa1205900 | MtrunA17_Chr5g0400661 | 39.103 | 156 | 76 | 1 | 174 | 310 | 179 | 334 | 1.10e-26 | 107 |
| Msa1205900 | MtrunA17_Chr2g0280161 | 30.392 | 306 | 153 | 9 | 56 | 313 | 60 | 353 | 3.71e-26 | 106 |
| Msa1205900 | MtrunA17_Chr4g0002801 | 32.812 | 256 | 118 | 8 | 99 | 311 | 87 | 331 | 2.14e-25 | 103 |
| Msa1205900 | MtrunA17_Chr4g0002851 | 39.259 | 135 | 70 | 2 | 174 | 308 | 72 | 194 | 7.53e-24 | 96.7 |
| Msa1205900 | MtrunA17_Chr7g0233441 | 37.778 | 135 | 80 | 2 | 174 | 308 | 64 | 194 | 3.77e-23 | 94.7 |
| Msa1205900 | MtrunA17_Chr4g0054561 | 37.681 | 138 | 78 | 3 | 174 | 305 | 185 | 320 | 2.83e-21 | 92.4 |
| Msa1205900 | MtrunA17_Chr4g0054551 | 37.681 | 138 | 78 | 3 | 174 | 305 | 185 | 320 | 8.94e-21 | 90.9 |
| Msa1205900 | MtrunA17_Chr4g0049331 | 36.486 | 148 | 84 | 2 | 174 | 313 | 165 | 310 | 1.25e-20 | 90.1 |
| Msa1205900 | MtrunA17_Chr2g0333611 | 35.172 | 145 | 86 | 3 | 174 | 312 | 75 | 217 | 1.06e-19 | 85.9 |
| Msa1205900 | MtrunA17_Chr8g0336681 | 28.736 | 261 | 120 | 9 | 90 | 306 | 93 | 331 | 1.70e-19 | 87.4 |
| Msa1205900 | MtrunA17_Chr4g0002781 | 33.498 | 203 | 91 | 6 | 151 | 311 | 150 | 350 | 4.01e-19 | 86.7 |
| Msa1205900 | MtrunA17_Chr4g0054571 | 36.538 | 156 | 78 | 2 | 174 | 312 | 180 | 331 | 1.36e-18 | 84.7 |
| Msa1205900 | MtrunA17_Chr5g0400671 | 26.190 | 294 | 171 | 7 | 60 | 310 | 33 | 323 | 6.77e-18 | 82.8 |
| Msa1205900 | MtrunA17_Chr2g0333621 | 26.070 | 257 | 136 | 7 | 95 | 314 | 76 | 315 | 6.78e-17 | 79.7 |
| Msa1205900 | MtrunA17_Chr2g0333641 | 30.093 | 216 | 106 | 9 | 125 | 305 | 97 | 302 | 1.02e-16 | 79.3 |
| Msa1205900 | MtrunA17_Chr2g0333541 | 34.483 | 145 | 85 | 4 | 174 | 309 | 124 | 267 | 4.78e-15 | 73.9 |
| Msa1205900 | MtrunA17_Chr7g0249811 | 23.488 | 281 | 174 | 7 | 55 | 306 | 56 | 324 | 3.96e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1205900 | AT2G22770.1 | 33.974 | 156 | 82 | 1 | 174 | 308 | 162 | 317 | 2.20e-22 | 95.9 |
| Msa1205900 | AT2G22760.1 | 36.913 | 149 | 80 | 5 | 174 | 310 | 149 | 295 | 1.49e-21 | 92.8 |
| Msa1205900 | AT4G37850.2 | 28.916 | 249 | 132 | 7 | 102 | 313 | 88 | 328 | 1.45e-18 | 85.1 |
| Msa1205900 | AT4G37850.1 | 28.916 | 249 | 132 | 7 | 102 | 313 | 88 | 328 | 1.45e-18 | 85.1 |
| Msa1205900 | AT2G22760.2 | 36.719 | 128 | 68 | 4 | 174 | 290 | 149 | 274 | 1.17e-16 | 79.0 |
| Msa1205900 | AT2G22750.3 | 32.000 | 150 | 90 | 3 | 174 | 312 | 184 | 332 | 3.32e-13 | 69.7 |
| Msa1205900 | AT2G22750.5 | 32.000 | 150 | 90 | 3 | 174 | 312 | 180 | 328 | 3.36e-13 | 69.7 |
| Msa1205900 | AT2G22750.2 | 32.000 | 150 | 90 | 3 | 174 | 312 | 156 | 304 | 4.11e-13 | 69.3 |
| Msa1205900 | AT2G22750.4 | 32.000 | 150 | 89 | 4 | 174 | 312 | 184 | 331 | 3.75e-12 | 66.6 |
| Msa1205900 | AT2G22750.1 | 32.000 | 150 | 89 | 4 | 174 | 312 | 156 | 303 | 4.73e-12 | 65.9 |
Find 49 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGTGTCATTGCCCAATT+TGG | 0.159846 | 8_1:+62537491 | Msa1205900:CDS |
| AAAACGTGTGTTATCCAAAT+TGG | 0.202416 | 8_1:-62537505 | None:intergenic |
| CCAAACCCAACAGATTTATA+CGG | 0.283498 | 8_1:+62537441 | Msa1205900:CDS |
| CAAGAAGTCCATCATGCTTT+TGG | 0.296888 | 8_1:-62538304 | None:intergenic |
| CGTATAAATCTGTTGGGTTT+GGG | 0.304768 | 8_1:-62537440 | None:intergenic |
| ACAATAGTGGTCTGGTTTGT+TGG | 0.341236 | 8_1:-62538198 | None:intergenic |
| CCGTATAAATCTGTTGGGTT+TGG | 0.355612 | 8_1:-62537441 | None:intergenic |
| AATTTGTTGTGAAAAGCTTT+TGG | 0.355869 | 8_1:-62537367 | None:intergenic |
| GGCTAGTGCCATTGCCTTTG+AGG | 0.361619 | 8_1:+62537203 | Msa1205900:CDS |
| ATGCTGCCATGCGTAAATTC+TGG | 0.377448 | 8_1:-62539884 | None:intergenic |
| AACGCTCTTTAAGCTCTTTG+AGG | 0.388426 | 8_1:-62538115 | None:intergenic |
| TCATGTAAAAGATCACATTA+TGG | 0.398549 | 8_1:+62537605 | Msa1205900:CDS |
| TTGGTGATGCTACTGCTATC+AGG | 0.398588 | 8_1:+62538234 | Msa1205900:CDS |
| CACTTTCAGTTTCACAATAG+TGG | 0.411282 | 8_1:-62538211 | None:intergenic |
| AGGGTAGAAGCAAAAGTGTC+AGG | 0.446583 | 8_1:+62538254 | Msa1205900:CDS |
| TCAGTTTCACAATAGTGGTC+TGG | 0.454097 | 8_1:-62538206 | None:intergenic |
| AAACGTGTGTTATCCAAATT+GGG | 0.461557 | 8_1:-62537504 | None:intergenic |
| TCAAACCCGTATAAATCTGT+TGG | 0.488589 | 8_1:-62537447 | None:intergenic |
| CAAACCCGTATAAATCTGTT+GGG | 0.491045 | 8_1:-62537446 | None:intergenic |
| ATCACAATCTAAGAGGTCTT+CGG | 0.516297 | 8_1:+62537581 | Msa1205900:CDS |
| CAAACCCAACAGATTTATAC+GGG | 0.531352 | 8_1:+62537442 | Msa1205900:CDS |
| CTAAAACATCACAATCTAAG+AGG | 0.533656 | 8_1:+62537574 | Msa1205900:CDS |
| AATCTCCAAAGGCTAAAATA+CGG | 0.534934 | 8_1:-62538376 | None:intergenic |
| GGGTTTGGGTTGTCAAAAGA+CGG | 0.535552 | 8_1:-62537426 | None:intergenic |
| GAATGTTTCGCTTAGAGTGG+TGG | 0.560814 | 8_1:-62537256 | None:intergenic |
| AGTCTCTCTTTGTTCCTCAA+AGG | 0.562733 | 8_1:-62537217 | None:intergenic |
| TGAGATGACTGAAAAGAGGA+TGG | 0.564225 | 8_1:-62537399 | None:intergenic |
| TCTTTGTTCCTCAAAGGCAA+TGG | 0.566921 | 8_1:-62537211 | None:intergenic |
| TGGTGATGCTACTGCTATCA+GGG | 0.568737 | 8_1:+62538235 | Msa1205900:CDS |
| ATTGAATGTTTCGCTTAGAG+TGG | 0.570806 | 8_1:-62537259 | None:intergenic |
| ATCCACTGCCAAAAGCATGA+TGG | 0.574310 | 8_1:+62538296 | Msa1205900:CDS |
| AATCTGAGATGACTGAAAAG+AGG | 0.576642 | 8_1:-62537403 | None:intergenic |
| ACTCTAAGCGAAACATTCAA+TGG | 0.582474 | 8_1:+62537261 | Msa1205900:CDS |
| CAGCAATGATTGTAATGTCG+TGG | 0.584079 | 8_1:-62538403 | None:intergenic |
| GGGTAGAAGCAAAAGTGTCA+GGG | 0.600504 | 8_1:+62538255 | Msa1205900:CDS |
| ATTGGGCAATGACACTGAAG+TGG | 0.602756 | 8_1:-62537487 | None:intergenic |
| AGAGTTTCTCTCACGTGACA+TGG | 0.613188 | 8_1:+62537182 | Msa1205900:CDS |
| TGAATACATGTTATTTGACA+AGG | 0.622791 | 8_1:+62537122 | Msa1205900:CDS |
| AATCATCGTGCAGGAAAAGG+TGG | 0.627645 | 8_1:+62537098 | None:intergenic |
| TTGGGCAATGACACTGAAGT+GGG | 0.628306 | 8_1:-62537486 | None:intergenic |
| ATATGTTAATTAGAAGGACA+AGG | 0.637697 | 8_1:+62538064 | Msa1205900:intron |
| CTGAAAAGAGGATGGAGATG+CGG | 0.641434 | 8_1:-62537391 | None:intergenic |
| CACAAAGGAAGATCAATCGA+TGG | 0.644880 | 8_1:+62538169 | Msa1205900:CDS |
| GAACTTGCTTGATGCTGACG+TGG | 0.647274 | 8_1:+62537155 | Msa1205900:CDS |
| CGACATTACAATCATTGCTG+AGG | 0.658041 | 8_1:+62538406 | Msa1205900:CDS |
| GTCGTGGAAAGAATCTCCAA+AGG | 0.662563 | 8_1:-62538387 | None:intergenic |
| TATTGTGAAACTGAAAGTGT+TGG | 0.666038 | 8_1:+62538215 | Msa1205900:CDS |
| ACTCGTCCAGAATTTACGCA+TGG | 0.673038 | 8_1:+62539878 | Msa1205900:CDS |
| AAAGGAAGATCAATCGATGG+TGG | 0.686344 | 8_1:+62538172 | Msa1205900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATATATAAAAACAAA+TGG | - | chr8_1:62537880-62537899 | None:intergenic | 10.0% |
| !! | TATATAATAGTAAAAGAATA+TGG | + | chr8_1:62537890-62537909 | Msa1205900:intron | 10.0% |
| !! | ATAATTTAAGAAAATTAAAG+TGG | - | chr8_1:62538008-62538027 | None:intergenic | 10.0% |
| !! | TGTAAAATATGTTAATTAGA+AGG | + | chr8_1:62538058-62538077 | Msa1205900:intron | 15.0% |
| !!! | CTTCTTTTTTATCTTTTTAT+TGG | + | chr8_1:62538684-62538703 | Msa1205900:intron | 15.0% |
| !! | ACATCAAAATATTTAATGAT+TGG | - | chr8_1:62538799-62538818 | None:intergenic | 15.0% |
| !!! | CACTCATTTTATAAAAAATT+AGG | + | chr8_1:62539407-62539426 | Msa1205900:intron | 15.0% |
| !! | TTATTAGATGAAATTCATAT+AGG | - | chr8_1:62539472-62539491 | None:intergenic | 15.0% |
| !! | TCTTAATAAATAAATCACTA+TGG | + | chr8_1:62539544-62539563 | Msa1205900:intron | 15.0% |
| !!! | TCTAGAAATTTTTATATATG+GGG | - | chr8_1:62539570-62539589 | None:intergenic | 15.0% |
| !!! | GTCTAGAAATTTTTATATAT+GGG | - | chr8_1:62539571-62539590 | None:intergenic | 15.0% |
| !! | TAATACATGGTTAAAGATAT+AGG | - | chr8_1:62537794-62537813 | None:intergenic | 20.0% |
| !!! | TTATAAGTTTTGCTAATACA+TGG | - | chr8_1:62537807-62537826 | None:intergenic | 20.0% |
| !!! | TCAATTTTAGAAGAAGAAAA+AGG | + | chr8_1:62538140-62538159 | Msa1205900:CDS | 20.0% |
| !!! | CAATTTTAGAAGAAGAAAAA+GGG | + | chr8_1:62538141-62538160 | Msa1205900:CDS | 20.0% |
| !! | ACAAAATAAACTCTATGATT+TGG | - | chr8_1:62538559-62538578 | None:intergenic | 20.0% |
| !! | TAAAAAGTAATCAAGCTTAT+GGG | - | chr8_1:62538775-62538794 | None:intergenic | 20.0% |
| !! | TTAAAAAGTAATCAAGCTTA+TGG | - | chr8_1:62538776-62538795 | None:intergenic | 20.0% |
| !!! | CTTAAATAATGAAAACGTTT+TGG | - | chr8_1:62538956-62538975 | None:intergenic | 20.0% |
| !!! | TTTTTTGACAAAGAGAATAA+TGG | - | chr8_1:62538989-62539008 | None:intergenic | 20.0% |
| !! | ATTATTCTCTTTGTCAAAAA+AGG | + | chr8_1:62538988-62539007 | Msa1205900:intron | 20.0% |
| !! | TTATTCTCTTTGTCAAAAAA+GGG | + | chr8_1:62538989-62539008 | Msa1205900:intron | 20.0% |
| !! | TATCATGAACTTAAATTGTA+GGG | + | chr8_1:62539094-62539113 | Msa1205900:intron | 20.0% |
| !!! | TGAACTTTTCATAGTTTATA+TGG | + | chr8_1:62539165-62539184 | Msa1205900:intron | 20.0% |
| !!! | CATTCTCTTTAAAAAAACAA+TGG | - | chr8_1:62539294-62539313 | None:intergenic | 20.0% |
| !!! | AAAAATTAGGTCCATATTTT+AGG | + | chr8_1:62539420-62539439 | Msa1205900:intron | 20.0% |
| !! | TAGAATCTATTCCTAAAATA+TGG | - | chr8_1:62539434-62539453 | None:intergenic | 20.0% |
| !!! | GGTCTAGAAATTTTTATATA+TGG | - | chr8_1:62539572-62539591 | None:intergenic | 20.0% |
| !! | TAACAATCAATACAAATAAG+TGG | - | chr8_1:62539806-62539825 | None:intergenic | 20.0% |
| !!! | TCTATTATTGTTTTACAGAT+TGG | + | chr8_1:62539828-62539847 | Msa1205900:intron | 20.0% |
| !! | TGAATACATGTTATTTGACA+AGG | + | chr8_1:62537122-62537141 | Msa1205900:CDS | 25.0% |
| ! | ATCAAAAAATTTCAGCTTCT+TGG | - | chr8_1:62537331-62537350 | None:intergenic | 25.0% |
| !!! | AATTTGTTGTGAAAAGCTTT+TGG | - | chr8_1:62537370-62537389 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAGACTCAATTGA+GGG | - | chr8_1:62537540-62537559 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAAGACTCAATTG+AGG | - | chr8_1:62537541-62537560 | None:intergenic | 25.0% |
| ! | TCATGTAAAAGATCACATTA+TGG | + | chr8_1:62537605-62537624 | Msa1205900:CDS | 25.0% |
| ! | TATAGGTTAAAGATGTGTAT+TGG | - | chr8_1:62537777-62537796 | None:intergenic | 25.0% |
| !! | TAATGTTAGATTTGTTTCGA+CGG | - | chr8_1:62537852-62537871 | None:intergenic | 25.0% |
| ! | ATATGTTAATTAGAAGGACA+AGG | + | chr8_1:62538064-62538083 | Msa1205900:intron | 25.0% |
| ! | AAGATGATGTAGAGAATAAA+TGG | - | chr8_1:62538481-62538500 | None:intergenic | 25.0% |
| !!! | TTTTCATAAGTTGAGATTGT+GGG | - | chr8_1:62538892-62538911 | None:intergenic | 25.0% |
| ! | GTATCATGAACTTAAATTGT+AGG | + | chr8_1:62539093-62539112 | Msa1205900:intron | 25.0% |
| ! | ATGTTTAAGCGATAAAATGA+TGG | - | chr8_1:62539320-62539339 | None:intergenic | 25.0% |
| ! | AAATATAAATGAGAGAACAG+TGG | - | chr8_1:62539365-62539384 | None:intergenic | 25.0% |
| !! | ATAACTTTTCTCTTTTTGTG+TGG | + | chr8_1:62539518-62539537 | Msa1205900:intron | 25.0% |
| ! | TGAATGAGAAAGTTGTTTAA+TGG | + | chr8_1:62539756-62539775 | Msa1205900:intron | 25.0% |
| AAAAATTTCAGCTTCTTGGT+TGG | - | chr8_1:62537327-62537346 | None:intergenic | 30.0% | |
| AAACGTGTGTTATCCAAATT+GGG | - | chr8_1:62537507-62537526 | None:intergenic | 30.0% | |
| AAAACGTGTGTTATCCAAAT+TGG | - | chr8_1:62537508-62537527 | None:intergenic | 30.0% | |
| GTCTTCAAAAAATCAGAACT+TGG | + | chr8_1:62537548-62537567 | Msa1205900:CDS | 30.0% | |
| CTAAAACATCACAATCTAAG+AGG | + | chr8_1:62537574-62537593 | Msa1205900:CDS | 30.0% | |
| AGTTACTTCTTACCTTCTTT+AGG | - | chr8_1:62537695-62537714 | None:intergenic | 30.0% | |
| ! | TATTGTGAAACTGAAAGTGT+TGG | + | chr8_1:62538215-62538234 | Msa1205900:CDS | 30.0% |
| !!! | AATAACCGTATTTTAGCCTT+TGG | + | chr8_1:62538371-62538390 | Msa1205900:CDS | 30.0% |
| AATCTCCAAAGGCTAAAATA+CGG | - | chr8_1:62538379-62538398 | None:intergenic | 30.0% | |
| !! | ATTTTGATGTTTTGCTCTAG+AGG | + | chr8_1:62538809-62538828 | Msa1205900:intron | 30.0% |
| ! | TTTCATAAGTTGAGATTGTG+GGG | - | chr8_1:62538891-62538910 | None:intergenic | 30.0% |
| !! | GTTTTCATAAGTTGAGATTG+TGG | - | chr8_1:62538893-62538912 | None:intergenic | 30.0% |
| ! | AAGCTTGCAGTTTGTATTTT+GGG | - | chr8_1:62539057-62539076 | None:intergenic | 30.0% |
| ! | AAAGCTTGCAGTTTGTATTT+TGG | - | chr8_1:62539058-62539077 | None:intergenic | 30.0% |
| GGGCTTAATACAAGTAAAAA+TGG | + | chr8_1:62539114-62539133 | Msa1205900:intron | 30.0% | |
| !!! | CGTTTGTTTTTACAAAAGTG+CGG | - | chr8_1:62539713-62539732 | None:intergenic | 30.0% |
| ATGGTTGTATAATTTCTCTC+TGG | + | chr8_1:62539775-62539794 | Msa1205900:intron | 30.0% | |
| !! | ATTGTTTTACAGATTGGTGA+AGG | + | chr8_1:62539834-62539853 | Msa1205900:intron | 30.0% |
| ATTGAATGTTTCGCTTAGAG+TGG | - | chr8_1:62537262-62537281 | None:intergenic | 35.0% | |
| ACTCTAAGCGAAACATTCAA+TGG | + | chr8_1:62537261-62537280 | Msa1205900:CDS | 35.0% | |
| ! | AATCTGAGATGACTGAAAAG+AGG | - | chr8_1:62537406-62537425 | None:intergenic | 35.0% |
| CGTATAAATCTGTTGGGTTT+GGG | - | chr8_1:62537443-62537462 | None:intergenic | 35.0% | |
| CCAAACCCAACAGATTTATA+CGG | + | chr8_1:62537441-62537460 | Msa1205900:CDS | 35.0% | |
| CAAACCCAACAGATTTATAC+GGG | + | chr8_1:62537442-62537461 | Msa1205900:CDS | 35.0% | |
| CAAACCCGTATAAATCTGTT+GGG | - | chr8_1:62537449-62537468 | None:intergenic | 35.0% | |
| TCAAACCCGTATAAATCTGT+TGG | - | chr8_1:62537450-62537469 | None:intergenic | 35.0% | |
| ATCACAATCTAAGAGGTCTT+CGG | + | chr8_1:62537581-62537600 | Msa1205900:CDS | 35.0% | |
| AGAAAACGAAGAGAGAAACT+CGG | + | chr8_1:62537633-62537652 | Msa1205900:intron | 35.0% | |
| GACTAGTAAGACATAGTCAT+AGG | - | chr8_1:62538035-62538054 | None:intergenic | 35.0% | |
| AGAAAAAGGGAAGAACACAA+AGG | + | chr8_1:62538154-62538173 | Msa1205900:CDS | 35.0% | |
| CACTTTCAGTTTCACAATAG+TGG | - | chr8_1:62538214-62538233 | None:intergenic | 35.0% | |
| ! | CAGGGAAAAAGATGTTGATT+AGG | + | chr8_1:62538273-62538292 | Msa1205900:CDS | 35.0% |
| TACAATCATTGCTGAGGTAA+AGG | + | chr8_1:62538412-62538431 | Msa1205900:intron | 35.0% | |
| ! | TAGAGAGAGAAGTATGAACA+TGG | + | chr8_1:62538717-62538736 | Msa1205900:intron | 35.0% |
| ! | AGAGAGAGAAGTATGAACAT+GGG | + | chr8_1:62538718-62538737 | Msa1205900:intron | 35.0% |
| GGCAACACAATATTTGAAAG+GGG | - | chr8_1:62538869-62538888 | None:intergenic | 35.0% | |
| GGGCAACACAATATTTGAAA+GGG | - | chr8_1:62538870-62538889 | None:intergenic | 35.0% | |
| ! | TTCATAAGTTGAGATTGTGG+GGG | - | chr8_1:62538890-62538909 | None:intergenic | 35.0% |
| TGACAAAGAGAATAATGGCA+TGG | - | chr8_1:62538984-62539003 | None:intergenic | 35.0% | |
| TCCAAACATGTCATTAGTGA+CGG | - | chr8_1:62539594-62539613 | None:intergenic | 35.0% | |
| ATGCATTGGGAAGTGAAATT+TGG | - | chr8_1:62539631-62539650 | None:intergenic | 35.0% | |
| TATCACGTCTAACATGCATT+GGG | - | chr8_1:62539644-62539663 | None:intergenic | 35.0% | |
| ATATCACGTCTAACATGCAT+TGG | - | chr8_1:62539645-62539664 | None:intergenic | 35.0% | |
| ! | ATTCTGGACGAGTTCTTTTA+AGG | - | chr8_1:62539871-62539890 | None:intergenic | 35.0% |
| TCTTTGTTCCTCAAAGGCAA+TGG | - | chr8_1:62537214-62537233 | None:intergenic | 40.0% | |
| AGTCTCTCTTTGTTCCTCAA+AGG | - | chr8_1:62537220-62537239 | None:intergenic | 40.0% | |
| TGAGATGACTGAAAAGAGGA+TGG | - | chr8_1:62537402-62537421 | None:intergenic | 40.0% | |
| CCGTATAAATCTGTTGGGTT+TGG | - | chr8_1:62537444-62537463 | None:intergenic | 40.0% | |
| ! | TTCAGTGTCATTGCCCAATT+TGG | + | chr8_1:62537491-62537510 | Msa1205900:CDS | 40.0% |
| ACTCATTCCTGACCTAAAGA+AGG | + | chr8_1:62537680-62537699 | Msa1205900:intron | 40.0% | |
| CTTCTTACCTTCTTTAGGTC+AGG | - | chr8_1:62537690-62537709 | None:intergenic | 40.0% | |
| CTTTAGATCGAAGACATACC+AGG | + | chr8_1:62537944-62537963 | Msa1205900:intron | 40.0% | |
| AACGCTCTTTAAGCTCTTTG+AGG | - | chr8_1:62538118-62538137 | None:intergenic | 40.0% | |
| CACAAAGGAAGATCAATCGA+TGG | + | chr8_1:62538169-62538188 | Msa1205900:CDS | 40.0% | |
| AAAGGAAGATCAATCGATGG+TGG | + | chr8_1:62538172-62538191 | Msa1205900:CDS | 40.0% | |
| ! | ACAATAGTGGTCTGGTTTGT+TGG | - | chr8_1:62538201-62538220 | None:intergenic | 40.0% |
| TCAGTTTCACAATAGTGGTC+TGG | - | chr8_1:62538209-62538228 | None:intergenic | 40.0% | |
| ! | CAAGAAGTCCATCATGCTTT+TGG | - | chr8_1:62538307-62538326 | None:intergenic | 40.0% |
| CAGCAATGATTGTAATGTCG+TGG | - | chr8_1:62538406-62538425 | None:intergenic | 40.0% | |
| CGACATTACAATCATTGCTG+AGG | + | chr8_1:62538406-62538425 | Msa1205900:CDS | 40.0% | |
| ATCTGCTATAGTGACTGTGA+CGG | - | chr8_1:62538841-62538860 | None:intergenic | 40.0% | |
| GGGGCAACACAATATTTGAA+AGG | - | chr8_1:62538871-62538890 | None:intergenic | 40.0% | |
| !! | ATTTTGGGTGTGGTAGTATG+TGG | - | chr8_1:62539042-62539061 | None:intergenic | 40.0% |
| !! | TGCAGTTTGTATTTTGGGTG+TGG | - | chr8_1:62539052-62539071 | None:intergenic | 40.0% |
| CCAAACATGTCATTAGTGAC+GGG | - | chr8_1:62539593-62539612 | None:intergenic | 40.0% | |
| ! | ATGTAGCTTTTGCTTTGCCA+TGG | + | chr8_1:62539680-62539699 | Msa1205900:intron | 40.0% |
| ! | TGTAGCTTTTGCTTTGCCAT+GGG | + | chr8_1:62539681-62539700 | Msa1205900:intron | 40.0% |
| AGAGTTTCTCTCACGTGACA+TGG | + | chr8_1:62537182-62537201 | Msa1205900:CDS | 45.0% | |
| GAATGTTTCGCTTAGAGTGG+TGG | - | chr8_1:62537259-62537278 | None:intergenic | 45.0% | |
| CTGAAAAGAGGATGGAGATG+CGG | - | chr8_1:62537394-62537413 | None:intergenic | 45.0% | |
| !! | GGGTTTGGGTTGTCAAAAGA+CGG | - | chr8_1:62537429-62537448 | None:intergenic | 45.0% |
| TTGGGCAATGACACTGAAGT+GGG | - | chr8_1:62537489-62537508 | None:intergenic | 45.0% | |
| ATTGGGCAATGACACTGAAG+TGG | - | chr8_1:62537490-62537509 | None:intergenic | 45.0% | |
| GAGTTCTGCAAGAGCAATGA+AGG | - | chr8_1:62537664-62537683 | None:intergenic | 45.0% | |
| ATATATTCGACCGAGACACC+TGG | - | chr8_1:62537965-62537984 | None:intergenic | 45.0% | |
| !! | TTGGTGATGCTACTGCTATC+AGG | + | chr8_1:62538234-62538253 | Msa1205900:CDS | 45.0% |
| ! | TGGTGATGCTACTGCTATCA+GGG | + | chr8_1:62538235-62538254 | Msa1205900:CDS | 45.0% |
| !! | AGGGTAGAAGCAAAAGTGTC+AGG | + | chr8_1:62538254-62538273 | Msa1205900:CDS | 45.0% |
| !! | GGGTAGAAGCAAAAGTGTCA+GGG | + | chr8_1:62538255-62538274 | Msa1205900:CDS | 45.0% |
| ! | ATCCACTGCCAAAAGCATGA+TGG | + | chr8_1:62538296-62538315 | Msa1205900:CDS | 45.0% |
| GTCGTGGAAAGAATCTCCAA+AGG | - | chr8_1:62538390-62538409 | None:intergenic | 45.0% | |
| ! | GAGAGAAGTATGAACATGGG+CGG | + | chr8_1:62538721-62538740 | Msa1205900:intron | 45.0% |
| TCTGCTATAGTGACTGTGAC+GGG | - | chr8_1:62538840-62538859 | None:intergenic | 45.0% | |
| AAGCTATAACCATGCCAGCT+CGG | + | chr8_1:62538927-62538946 | Msa1205900:intron | 45.0% | |
| !!! | AAACGTTTTGGTTACCGAGC+TGG | - | chr8_1:62538944-62538963 | None:intergenic | 45.0% |
| CCCGTCACTAATGACATGTT+TGG | + | chr8_1:62539590-62539609 | Msa1205900:intron | 45.0% | |
| TGACATGTTTGGATCAGCGT+TGG | + | chr8_1:62539601-62539620 | Msa1205900:intron | 45.0% | |
| ! | AAAAGTGCGGTGAATTCCCA+TGG | - | chr8_1:62539700-62539719 | None:intergenic | 45.0% |
| ACTCGTCCAGAATTTACGCA+TGG | + | chr8_1:62539878-62539897 | Msa1205900:CDS | 45.0% | |
| ATGCTGCCATGCGTAAATTC+TGG | - | chr8_1:62539887-62539906 | None:intergenic | 45.0% | |
| ! | GAACTTGCTTGATGCTGACG+TGG | + | chr8_1:62537155-62537174 | Msa1205900:CDS | 50.0% |
| CGAAGACATACCAGGTGTCT+CGG | + | chr8_1:62537952-62537971 | Msa1205900:intron | 50.0% | |
| ! | GTCCATCATGCTTTTGGCAG+TGG | - | chr8_1:62538301-62538320 | None:intergenic | 50.0% |
| TATGAACATGGGCGGATCCA+CGG | + | chr8_1:62538729-62538748 | Msa1205900:intron | 50.0% | |
| !! | TTTTGGTTACCGAGCTGGCA+TGG | - | chr8_1:62538939-62538958 | None:intergenic | 50.0% |
| ! | GGCTAGTGCCATTGCCTTTG+AGG | + | chr8_1:62537203-62537222 | Msa1205900:CDS | 55.0% |
| ATGAACATGGGCGGATCCAC+GGG | + | chr8_1:62538730-62538749 | Msa1205900:intron | 55.0% | |
| GCGGATCCACGGGTTCAATT+GGG | + | chr8_1:62538740-62538759 | Msa1205900:intron | 55.0% | |
| CGGATCCACGGGTTCAATTG+GGG | + | chr8_1:62538741-62538760 | Msa1205900:intron | 55.0% | |
| GGCGGATCCACGGGTTCAAT+TGG | + | chr8_1:62538739-62538758 | Msa1205900:intron | 60.0% | |
| GCTGTCCCCAATTGAACCCG+TGG | - | chr8_1:62538749-62538768 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 62537111 | 62539926 | 62537111 | ID=Msa1205900;Name=Msa1205900 |
| chr8_1 | mRNA | 62537111 | 62539926 | 62537111 | ID=Msa1205900-mRNA-1;Parent=Msa1205900;Name=Msa1205900-mRNA-1;_AED=0.09;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|315 |
| chr8_1 | exon | 62537111 | 62537626 | 62537111 | ID=Msa1205900-mRNA-1:exon:20288;Parent=Msa1205900-mRNA-1 |
| chr8_1 | exon | 62538077 | 62538427 | 62538077 | ID=Msa1205900-mRNA-1:exon:20289;Parent=Msa1205900-mRNA-1 |
| chr8_1 | exon | 62539846 | 62539926 | 62539846 | ID=Msa1205900-mRNA-1:exon:20290;Parent=Msa1205900-mRNA-1 |
| chr8_1 | CDS | 62537111 | 62537626 | 62537111 | ID=Msa1205900-mRNA-1:cds;Parent=Msa1205900-mRNA-1 |
| chr8_1 | CDS | 62538077 | 62538427 | 62538077 | ID=Msa1205900-mRNA-1:cds;Parent=Msa1205900-mRNA-1 |
| chr8_1 | CDS | 62539846 | 62539926 | 62539846 | ID=Msa1205900-mRNA-1:cds;Parent=Msa1205900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
