AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297460 MtrunA17_Chr4g0054621 81.686 344 32 5 1 338 1 319 0.0 545
Msa1297460 MtrunA17_Chr4g0054581 50.670 373 132 15 1 338 1 356 2.57e-93 283
Msa1297460 MtrunA17_Chr2g0307131 49.014 355 138 15 1 336 1 331 3.28e-81 251
Msa1297460 MtrunA17_Chr6g0468461 49.143 350 131 15 1 339 1 314 1.19e-78 244
Msa1297460 MtrunA17_Chr2g0307141 45.506 356 153 14 1 336 1 335 5.86e-76 238
Msa1297460 MtrunA17_Chr4g0033281 45.882 340 145 9 1 338 1 303 8.61e-76 236
Msa1297460 MtrunA17_Chr6g0468491 47.720 329 116 15 24 336 1 289 1.32e-73 230
Msa1297460 MtrunA17_Chr4g0033291 45.322 342 147 12 1 338 1 306 8.73e-71 223
Msa1297460 MtrunA17_Chr4g0033391 44.606 343 140 14 1 338 1 298 2.50e-69 219
Msa1297460 MtrunA17_Chr7g0225901 48.193 249 88 10 101 339 26 243 2.68e-55 181
Msa1297460 MtrunA17_Chr5g0400621 40.061 327 153 9 17 336 19 309 6.32e-48 164
Msa1297460 MtrunA17_Chr5g0400641 52.288 153 63 2 193 337 1 151 3.08e-42 144
Msa1297460 MtrunA17_Chr5g0400661 38.333 240 112 4 124 336 84 314 1.90e-39 142
Msa1297460 MtrunA17_Chr2g0280161 36.111 288 148 9 77 341 60 334 1.58e-38 140
Msa1297460 MtrunA17_Chr4g0054561 41.071 168 91 3 175 336 140 305 9.92e-34 127
Msa1297460 MtrunA17_Chr4g0054551 41.667 168 90 3 175 336 140 305 3.00e-33 125
Msa1297460 MtrunA17_Chr4g0002801 37.872 235 117 7 120 336 87 310 3.57e-33 125
Msa1297460 MtrunA17_Chr5g0400671 32.117 274 165 6 81 336 33 303 2.77e-32 122
Msa1297460 MtrunA17_Chr4g0054571 34.752 282 132 6 85 340 58 313 1.53e-31 121
Msa1297460 MtrunA17_Chr4g0049331 40.351 171 92 2 174 336 119 287 3.16e-31 119
Msa1297460 MtrunA17_Chr8g0336681 34.413 247 121 8 111 338 93 317 1.58e-30 118
Msa1297460 MtrunA17_Chr4g0002781 41.304 184 89 5 172 338 150 331 8.62e-30 116
Msa1297460 MtrunA17_Chr2g0333621 32.766 235 129 6 116 338 76 293 4.04e-28 111
Msa1297460 MtrunA17_Chr2g0333611 37.037 162 94 2 183 338 38 197 7.15e-28 108
Msa1297460 MtrunA17_Chr2g0333641 35.961 203 110 8 146 338 97 289 6.26e-26 105
Msa1297460 MtrunA17_Chr7g0249811 27.170 265 177 5 76 336 56 308 6.26e-24 100
Msa1297460 MtrunA17_Chr2g0333541 31.839 223 137 7 126 338 33 250 1.31e-19 87.4
Msa1297460 MtrunA17_Chr4g0002851 38.095 126 66 2 213 338 65 178 1.55e-18 82.4
Msa1297460 MtrunA17_Chr4g0002831 36.296 135 82 2 204 338 56 186 1.60e-18 82.8
Msa1297460 MtrunA17_Chr7g0233441 37.398 123 73 2 216 338 60 178 7.44e-18 80.9
Msa1297460 MtrunA17_Chr7g0275821 31.333 150 94 4 190 335 252 396 3.28e-15 76.3
Msa1297460 MtrunA17_Chr1g0185621 29.012 162 96 3 190 337 475 631 6.75e-14 72.8
Msa1297460 MtrunA17_Chr8g0366751 32.168 143 80 3 190 315 462 604 1.04e-13 72.0
Msa1297460 MtrunA17_Chr5g0411341 27.684 177 95 5 166 315 465 635 2.22e-11 65.1
Msa1297460 MtrunA17_Chr8g0346161 30.882 136 79 6 190 313 291 423 3.07e-11 64.3
Msa1297460 MtrunA17_Chr3g0131691 26.702 191 120 5 165 338 274 461 9.28e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297460 AT2G22760.2 41.176 170 87 4 178 336 107 274 6.93e-33 124
Msa1297460 AT2G22770.1 33.937 221 118 3 138 336 85 299 9.82e-33 124
Msa1297460 AT2G22760.1 40.588 170 88 4 178 336 107 274 3.23e-32 122
Msa1297460 AT4G37850.2 36.444 225 123 6 123 335 88 304 1.11e-31 121
Msa1297460 AT4G37850.1 36.444 225 123 6 123 335 88 304 1.11e-31 121
Msa1297460 AT2G22750.2 41.860 172 87 5 176 335 111 281 8.29e-28 110
Msa1297460 AT2G22750.4 41.860 172 87 5 176 335 139 309 8.83e-28 111
Msa1297460 AT2G22750.1 41.860 172 87 5 176 335 111 281 9.29e-28 110
Msa1297460 AT2G22750.3 41.860 172 87 5 176 335 139 309 1.07e-27 111
Msa1297460 AT2G22750.5 41.860 172 87 5 176 335 135 305 1.14e-27 110
Msa1297460 AT5G46760.1 34.454 119 68 2 190 298 415 533 1.50e-13 72.0
Msa1297460 AT2G46510.1 37.634 93 53 2 190 279 395 485 1.72e-13 71.6
Msa1297460 AT4G17880.1 33.103 145 84 3 190 321 416 560 2.02e-13 71.6
Msa1297460 AT1G32640.1 26.007 273 171 9 70 315 316 584 1.24e-12 69.3
Msa1297460 AT4G09820.1 33.043 115 63 2 191 305 364 464 1.30e-12 68.9
Msa1297460 AT1G01260.1 28.571 126 74 2 169 294 412 521 3.06e-12 68.2
Msa1297460 AT1G01260.2 28.571 126 74 2 169 294 412 521 3.06e-12 68.2
Msa1297460 AT1G01260.3 28.571 126 74 2 169 294 412 521 3.06e-12 68.2
Msa1297460 AT4G16430.1 30.968 155 90 5 100 246 231 376 5.34e-11 63.9
Msa1297460 AT3G61950.6 29.197 137 87 4 190 317 128 263 7.73e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTGTCATTGCCCAATT+TGG 0.159846 8_3:-57772835 Msa1297460:CDS
AAAACGTGTGTTATCCAAAT+TGG 0.202416 8_3:+57772821 None:intergenic
CAGAACCTTGTTATTTGATT+TGG 0.256803 8_3:-57773567 Msa1297460:intron
CCAAACCCAACAGATTTATA+CGG 0.283498 8_3:-57772885 Msa1297460:CDS
CAAGAAGTCCATCATGCTTT+TGG 0.296888 8_3:+57772022 None:intergenic
CGTATAAATCTGTTGGGTTT+GGG 0.304768 8_3:+57772886 None:intergenic
CTGTCTGCTGATATGTTCAT+TGG 0.315898 8_3:+57773587 None:intergenic
AGTTACTTCTTACCTTCTTT+AGG 0.329290 8_3:+57772634 None:intergenic
ACAATAGTGGTCTGGTTTGT+TGG 0.341236 8_3:+57772128 None:intergenic
CCGTATAAATCTGTTGGGTT+TGG 0.355612 8_3:+57772885 None:intergenic
AATTTGTTGTGAAAAGCTTT+TGG 0.355869 8_3:+57772959 None:intergenic
GGCTAGTGCCATTGCCTTTG+AGG 0.361619 8_3:-57773123 Msa1297460:CDS
AACGCTCTTTAAGCTCTTTG+AGG 0.388426 8_3:+57772211 None:intergenic
CTTCTTACCTTCTTTAGGTC+AGG 0.391987 8_3:+57772639 None:intergenic
TCATGTAAAAGATCACATTA+TGG 0.398549 8_3:-57772721 Msa1297460:CDS
TTGGTGATGCTACTGCTATC+AGG 0.398588 8_3:-57772092 Msa1297460:CDS
CACTTTCAGTTTCACAATAG+TGG 0.411282 8_3:+57772115 None:intergenic
AGGGTAGAAGCAAAAGTGTC+AGG 0.446583 8_3:-57772072 Msa1297460:CDS
TCAGTTTCACAATAGTGGTC+TGG 0.454097 8_3:+57772120 None:intergenic
AAACGTGTGTTATCCAAATT+GGG 0.461557 8_3:+57772822 None:intergenic
TACAATCATTGCTGAGGTAA+AGG 0.467521 8_3:-57771914 Msa1297460:CDS
TCAAACCCGTATAAATCTGT+TGG 0.488589 8_3:+57772879 None:intergenic
CAAACCCGTATAAATCTGTT+GGG 0.491045 8_3:+57772880 None:intergenic
GAGTTCTGCAAGAGCAATGA+AGG 0.495896 8_3:+57772665 None:intergenic
ATCACAATCTAAGAGGTCTT+CGG 0.516297 8_3:-57772745 Msa1297460:CDS
CAAACCCAACAGATTTATAC+GGG 0.531352 8_3:-57772884 Msa1297460:CDS
CTAAAACATCACAATCTAAG+AGG 0.533656 8_3:-57772752 Msa1297460:CDS
AATCTCCAAAGGCTAAAATA+CGG 0.534934 8_3:+57771950 None:intergenic
GGGTTTGGGTTGTCAAAAGA+CGG 0.535552 8_3:+57772900 None:intergenic
ACTCATTCCTGACCTAAAGA+AGG 0.552914 8_3:-57772646 Msa1297460:intron
GAATGTTTCGCTTAGAGTGG+TGG 0.560814 8_3:+57773070 None:intergenic
AGTCTCTCTTTGTTCCTCAA+AGG 0.562733 8_3:+57773109 None:intergenic
TGAGATGACTGAAAAGAGGA+TGG 0.564225 8_3:+57772927 None:intergenic
TCTTTGTTCCTCAAAGGCAA+TGG 0.566921 8_3:+57773115 None:intergenic
TGGTGATGCTACTGCTATCA+GGG 0.568737 8_3:-57772091 Msa1297460:CDS
ATTGAATGTTTCGCTTAGAG+TGG 0.570806 8_3:+57773067 None:intergenic
ATCCACTGCCAAAAGCATGA+TGG 0.574310 8_3:-57772030 Msa1297460:CDS
AATCTGAGATGACTGAAAAG+AGG 0.576642 8_3:+57772923 None:intergenic
ACTCTAAGCGAAACATTCAA+TGG 0.582474 8_3:-57773065 Msa1297460:CDS
CAGCAATGATTGTAATGTCG+TGG 0.584079 8_3:+57771923 None:intergenic
GGGTAGAAGCAAAAGTGTCA+GGG 0.600504 8_3:-57772071 Msa1297460:CDS
ATTGGGCAATGACACTGAAG+TGG 0.602756 8_3:+57772839 None:intergenic
AGAGTTTCTCTCACGTGACA+TGG 0.613188 8_3:-57773144 Msa1297460:CDS
TGAATACATGTTATTTGACA+AGG 0.622791 8_3:-57773204 Msa1297460:CDS
AATCATCGTGCAGGAAAAGG+TGG 0.627645 8_3:-57773228 Msa1297460:intron
TTGGGCAATGACACTGAAGT+GGG 0.628306 8_3:+57772840 None:intergenic
TCTCACCAAATCAAATAACA+AGG 0.637420 8_3:+57773562 None:intergenic
ATATGTTAATTAGAAGGACA+AGG 0.637697 8_3:-57772262 Msa1297460:intron
CTGAAAAGAGGATGGAGATG+CGG 0.641434 8_3:+57772935 None:intergenic
CACAAAGGAAGATCAATCGA+TGG 0.644880 8_3:-57772157 Msa1297460:CDS
GAACTTGCTTGATGCTGACG+TGG 0.647274 8_3:-57773171 Msa1297460:CDS
CGACATTACAATCATTGCTG+AGG 0.658041 8_3:-57771920 Msa1297460:CDS
GTCGTGGAAAGAATCTCCAA+AGG 0.662563 8_3:+57771939 None:intergenic
TATTGTGAAACTGAAAGTGT+TGG 0.666038 8_3:-57772111 Msa1297460:CDS
AGAAAACGAAGAGAGAAACT+CGG 0.671233 8_3:-57772693 Msa1297460:CDS
AAAGGAAGATCAATCGATGG+TGG 0.686344 8_3:-57772154 Msa1297460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTATATATAAAAACAAA+TGG + chr8_3:57773062-57773081 None:intergenic 10.0%
!! TATATAATAGTAAAAGAATA+TGG - chr8_3:57773072-57773091 Msa1297460:CDS 10.0%
!! ATAATTTAAGAAAATTAAAG+TGG + chr8_3:57773190-57773209 None:intergenic 10.0%
!! CTATTATATATAAAAACAAA+TGG + chr8_3:57773062-57773081 None:intergenic 10.0%
!! TATATAATAGTAAAAGAATA+TGG - chr8_3:57773072-57773091 Msa1297460:CDS 10.0%
!! ATAATTTAAGAAAATTAAAG+TGG + chr8_3:57773190-57773209 None:intergenic 10.0%
!! TGTAAAATATGTTAATTAGA+AGG - chr8_3:57773240-57773259 Msa1297460:intron 15.0%
!! TGTAAAATATGTTAATTAGA+AGG - chr8_3:57773240-57773259 Msa1297460:intron 15.0%
!!! AACTAGCTAAACTTTATTTA+CGG + chr8_3:57772060-57772079 None:intergenic 20.0%
!! TAATACATGGTTAAAGATAT+AGG + chr8_3:57772976-57772995 None:intergenic 20.0%
!!! TTATAAGTTTTGCTAATACA+TGG + chr8_3:57772989-57773008 None:intergenic 20.0%
!!! TCAATTTTAGAAGAAGAAAA+AGG - chr8_3:57773322-57773341 Msa1297460:intron 20.0%
!!! CAATTTTAGAAGAAGAAAAA+GGG - chr8_3:57773323-57773342 Msa1297460:intron 20.0%
!!! AACTAGCTAAACTTTATTTA+CGG + chr8_3:57772060-57772079 None:intergenic 20.0%
!! TAATACATGGTTAAAGATAT+AGG + chr8_3:57772976-57772995 None:intergenic 20.0%
!!! TTATAAGTTTTGCTAATACA+TGG + chr8_3:57772989-57773008 None:intergenic 20.0%
!!! TCAATTTTAGAAGAAGAAAA+AGG - chr8_3:57773322-57773341 Msa1297460:intron 20.0%
!!! CAATTTTAGAAGAAGAAAAA+GGG - chr8_3:57773323-57773342 Msa1297460:intron 20.0%
! AAAAAAAAAACTTGAGAGAC+AGG + chr8_3:57771983-57772002 None:intergenic 25.0%
!! TGAATACATGTTATTTGACA+AGG - chr8_3:57772304-57772323 Msa1297460:intron 25.0%
! ATCAAAAAATTTCAGCTTCT+TGG + chr8_3:57772513-57772532 None:intergenic 25.0%
!!! AATTTGTTGTGAAAAGCTTT+TGG + chr8_3:57772552-57772571 None:intergenic 25.0%
!!! TTTTTTGAAGACTCAATTGA+GGG + chr8_3:57772722-57772741 None:intergenic 25.0%
!!! ATTTTTTGAAGACTCAATTG+AGG + chr8_3:57772723-57772742 None:intergenic 25.0%
! TCATGTAAAAGATCACATTA+TGG - chr8_3:57772787-57772806 Msa1297460:CDS 25.0%
! TATAGGTTAAAGATGTGTAT+TGG + chr8_3:57772959-57772978 None:intergenic 25.0%
!! TAATGTTAGATTTGTTTCGA+CGG + chr8_3:57773034-57773053 None:intergenic 25.0%
! ATATGTTAATTAGAAGGACA+AGG - chr8_3:57773246-57773265 Msa1297460:intron 25.0%
! AAAAAAAAAACTTGAGAGAC+AGG + chr8_3:57771983-57772002 None:intergenic 25.0%
!! TGAATACATGTTATTTGACA+AGG - chr8_3:57772304-57772323 Msa1297460:intron 25.0%
! ATCAAAAAATTTCAGCTTCT+TGG + chr8_3:57772513-57772532 None:intergenic 25.0%
!!! AATTTGTTGTGAAAAGCTTT+TGG + chr8_3:57772552-57772571 None:intergenic 25.0%
!!! TTTTTTGAAGACTCAATTGA+GGG + chr8_3:57772722-57772741 None:intergenic 25.0%
!!! ATTTTTTGAAGACTCAATTG+AGG + chr8_3:57772723-57772742 None:intergenic 25.0%
! TCATGTAAAAGATCACATTA+TGG - chr8_3:57772787-57772806 Msa1297460:CDS 25.0%
! TATAGGTTAAAGATGTGTAT+TGG + chr8_3:57772959-57772978 None:intergenic 25.0%
!! TAATGTTAGATTTGTTTCGA+CGG + chr8_3:57773034-57773053 None:intergenic 25.0%
! ATATGTTAATTAGAAGGACA+AGG - chr8_3:57773246-57773265 Msa1297460:intron 25.0%
!! CAGAACCTTGTTATTTGATT+TGG - chr8_3:57771941-57771960 Msa1297460:CDS 30.0%
TCTCACCAAATCAAATAACA+AGG + chr8_3:57771949-57771968 None:intergenic 30.0%
GTTTCAGTCAAATTTGAACT+CGG - chr8_3:57772080-57772099 Msa1297460:CDS 30.0%
TTGATATTGCGTTTGCAAAA+CGG + chr8_3:57772190-57772209 None:intergenic 30.0%
TAATTCTTTAATCATCGTGC+AGG - chr8_3:57772271-57772290 Msa1297460:intron 30.0%
AAAAATTTCAGCTTCTTGGT+TGG + chr8_3:57772509-57772528 None:intergenic 30.0%
AAACGTGTGTTATCCAAATT+GGG + chr8_3:57772689-57772708 None:intergenic 30.0%
AAAACGTGTGTTATCCAAAT+TGG + chr8_3:57772690-57772709 None:intergenic 30.0%
GTCTTCAAAAAATCAGAACT+TGG - chr8_3:57772730-57772749 Msa1297460:CDS 30.0%
CTAAAACATCACAATCTAAG+AGG - chr8_3:57772756-57772775 Msa1297460:CDS 30.0%
AGTTACTTCTTACCTTCTTT+AGG + chr8_3:57772877-57772896 None:intergenic 30.0%
! TATTGTGAAACTGAAAGTGT+TGG - chr8_3:57773397-57773416 Msa1297460:intron 30.0%
!!! AATAACCGTATTTTAGCCTT+TGG - chr8_3:57773553-57773572 Msa1297460:intron 30.0%
AATCTCCAAAGGCTAAAATA+CGG + chr8_3:57773561-57773580 None:intergenic 30.0%
!! CAGAACCTTGTTATTTGATT+TGG - chr8_3:57771941-57771960 Msa1297460:CDS 30.0%
TCTCACCAAATCAAATAACA+AGG + chr8_3:57771949-57771968 None:intergenic 30.0%
GTTTCAGTCAAATTTGAACT+CGG - chr8_3:57772080-57772099 Msa1297460:CDS 30.0%
TTGATATTGCGTTTGCAAAA+CGG + chr8_3:57772190-57772209 None:intergenic 30.0%
TAATTCTTTAATCATCGTGC+AGG - chr8_3:57772271-57772290 Msa1297460:intron 30.0%
AAAAATTTCAGCTTCTTGGT+TGG + chr8_3:57772509-57772528 None:intergenic 30.0%
AAACGTGTGTTATCCAAATT+GGG + chr8_3:57772689-57772708 None:intergenic 30.0%
AAAACGTGTGTTATCCAAAT+TGG + chr8_3:57772690-57772709 None:intergenic 30.0%
GTCTTCAAAAAATCAGAACT+TGG - chr8_3:57772730-57772749 Msa1297460:CDS 30.0%
CTAAAACATCACAATCTAAG+AGG - chr8_3:57772756-57772775 Msa1297460:CDS 30.0%
AGTTACTTCTTACCTTCTTT+AGG + chr8_3:57772877-57772896 None:intergenic 30.0%
! TATTGTGAAACTGAAAGTGT+TGG - chr8_3:57773397-57773416 Msa1297460:intron 30.0%
!!! AATAACCGTATTTTAGCCTT+TGG - chr8_3:57773553-57773572 Msa1297460:intron 30.0%
AATCTCCAAAGGCTAAAATA+CGG + chr8_3:57773561-57773580 None:intergenic 30.0%
!! GATCTCTTTCTAAGACAAGA+GGG + chr8_3:57772014-57772033 None:intergenic 35.0%
CTCTTGTCTTAGAAAGAGAT+CGG - chr8_3:57772013-57772032 Msa1297460:CDS 35.0%
TCTTGTCTTAGAAAGAGATC+GGG - chr8_3:57772014-57772033 Msa1297460:CDS 35.0%
AGTTCATTAACCACTTCAGT+TGG - chr8_3:57772232-57772251 Msa1297460:CDS 35.0%
TTTAATCATCGTGCAGGAAA+AGG - chr8_3:57772277-57772296 Msa1297460:intron 35.0%
ATTGAATGTTTCGCTTAGAG+TGG + chr8_3:57772444-57772463 None:intergenic 35.0%
ACTCTAAGCGAAACATTCAA+TGG - chr8_3:57772443-57772462 Msa1297460:intron 35.0%
! AATCTGAGATGACTGAAAAG+AGG + chr8_3:57772588-57772607 None:intergenic 35.0%
CGTATAAATCTGTTGGGTTT+GGG + chr8_3:57772625-57772644 None:intergenic 35.0%
CCAAACCCAACAGATTTATA+CGG - chr8_3:57772623-57772642 Msa1297460:intron 35.0%
CAAACCCAACAGATTTATAC+GGG - chr8_3:57772624-57772643 Msa1297460:intron 35.0%
CAAACCCGTATAAATCTGTT+GGG + chr8_3:57772631-57772650 None:intergenic 35.0%
TCAAACCCGTATAAATCTGT+TGG + chr8_3:57772632-57772651 None:intergenic 35.0%
ATCACAATCTAAGAGGTCTT+CGG - chr8_3:57772763-57772782 Msa1297460:CDS 35.0%
AGAAAACGAAGAGAGAAACT+CGG - chr8_3:57772815-57772834 Msa1297460:CDS 35.0%
GACTAGTAAGACATAGTCAT+AGG + chr8_3:57773217-57773236 None:intergenic 35.0%
AGAAAAAGGGAAGAACACAA+AGG - chr8_3:57773336-57773355 Msa1297460:intron 35.0%
CACTTTCAGTTTCACAATAG+TGG + chr8_3:57773396-57773415 None:intergenic 35.0%
! CAGGGAAAAAGATGTTGATT+AGG - chr8_3:57773455-57773474 Msa1297460:intron 35.0%
TACAATCATTGCTGAGGTAA+AGG - chr8_3:57773594-57773613 Msa1297460:CDS 35.0%
!! GATCTCTTTCTAAGACAAGA+GGG + chr8_3:57772014-57772033 None:intergenic 35.0%
CTCTTGTCTTAGAAAGAGAT+CGG - chr8_3:57772013-57772032 Msa1297460:CDS 35.0%
TCTTGTCTTAGAAAGAGATC+GGG - chr8_3:57772014-57772033 Msa1297460:CDS 35.0%
AGTTCATTAACCACTTCAGT+TGG - chr8_3:57772232-57772251 Msa1297460:CDS 35.0%
TTTAATCATCGTGCAGGAAA+AGG - chr8_3:57772277-57772296 Msa1297460:intron 35.0%
ATTGAATGTTTCGCTTAGAG+TGG + chr8_3:57772444-57772463 None:intergenic 35.0%
ACTCTAAGCGAAACATTCAA+TGG - chr8_3:57772443-57772462 Msa1297460:intron 35.0%
! AATCTGAGATGACTGAAAAG+AGG + chr8_3:57772588-57772607 None:intergenic 35.0%
CGTATAAATCTGTTGGGTTT+GGG + chr8_3:57772625-57772644 None:intergenic 35.0%
CCAAACCCAACAGATTTATA+CGG - chr8_3:57772623-57772642 Msa1297460:intron 35.0%
CAAACCCAACAGATTTATAC+GGG - chr8_3:57772624-57772643 Msa1297460:intron 35.0%
CAAACCCGTATAAATCTGTT+GGG + chr8_3:57772631-57772650 None:intergenic 35.0%
TCAAACCCGTATAAATCTGT+TGG + chr8_3:57772632-57772651 None:intergenic 35.0%
ATCACAATCTAAGAGGTCTT+CGG - chr8_3:57772763-57772782 Msa1297460:CDS 35.0%
AGAAAACGAAGAGAGAAACT+CGG - chr8_3:57772815-57772834 Msa1297460:CDS 35.0%
GACTAGTAAGACATAGTCAT+AGG + chr8_3:57773217-57773236 None:intergenic 35.0%
AGAAAAAGGGAAGAACACAA+AGG - chr8_3:57773336-57773355 Msa1297460:intron 35.0%
CACTTTCAGTTTCACAATAG+TGG + chr8_3:57773396-57773415 None:intergenic 35.0%
! CAGGGAAAAAGATGTTGATT+AGG - chr8_3:57773455-57773474 Msa1297460:intron 35.0%
TACAATCATTGCTGAGGTAA+AGG - chr8_3:57773594-57773613 Msa1297460:CDS 35.0%
CTGTCTGCTGATATGTTCAT+TGG + chr8_3:57771924-57771943 None:intergenic 40.0%
!! CGATCTCTTTCTAAGACAAG+AGG + chr8_3:57772015-57772034 None:intergenic 40.0%
! CGGGTAATTTGTAGTTCAGT+CGG - chr8_3:57772033-57772052 Msa1297460:CDS 40.0%
GGAAATCACAACAAAACGCA+CGG + chr8_3:57772118-57772137 None:intergenic 40.0%
!! TGCGTTTTGTTGTGATTTCC+AGG - chr8_3:57772118-57772137 Msa1297460:CDS 40.0%
!! GCGTTTTGTTGTGATTTCCA+GGG - chr8_3:57772119-57772138 Msa1297460:CDS 40.0%
!! CGTTTTGTTGTGATTTCCAG+GGG - chr8_3:57772120-57772139 Msa1297460:CDS 40.0%
! AAGCTAGTATTTAAAGCCCC+TGG + chr8_3:57772139-57772158 None:intergenic 40.0%
ACGGAGTTTGATGGAAATCA+CGG + chr8_3:57772171-57772190 None:intergenic 40.0%
GTTTGCAAAACGGAGTTTGA+TGG + chr8_3:57772180-57772199 None:intergenic 40.0%
CATTTGTGAACCAACTGAAG+TGG + chr8_3:57772245-57772264 None:intergenic 40.0%
TCTTTGTTCCTCAAAGGCAA+TGG + chr8_3:57772396-57772415 None:intergenic 40.0%
AGTCTCTCTTTGTTCCTCAA+AGG + chr8_3:57772402-57772421 None:intergenic 40.0%
TGAGATGACTGAAAAGAGGA+TGG + chr8_3:57772584-57772603 None:intergenic 40.0%
CCGTATAAATCTGTTGGGTT+TGG + chr8_3:57772626-57772645 None:intergenic 40.0%
! TTCAGTGTCATTGCCCAATT+TGG - chr8_3:57772673-57772692 Msa1297460:CDS 40.0%
ACTCATTCCTGACCTAAAGA+AGG - chr8_3:57772862-57772881 Msa1297460:CDS 40.0%
CTTCTTACCTTCTTTAGGTC+AGG + chr8_3:57772872-57772891 None:intergenic 40.0%
CTTTAGATCGAAGACATACC+AGG - chr8_3:57773126-57773145 Msa1297460:CDS 40.0%
AACGCTCTTTAAGCTCTTTG+AGG + chr8_3:57773300-57773319 None:intergenic 40.0%
CACAAAGGAAGATCAATCGA+TGG - chr8_3:57773351-57773370 Msa1297460:intron 40.0%
AAAGGAAGATCAATCGATGG+TGG - chr8_3:57773354-57773373 Msa1297460:intron 40.0%
! ACAATAGTGGTCTGGTTTGT+TGG + chr8_3:57773383-57773402 None:intergenic 40.0%
TCAGTTTCACAATAGTGGTC+TGG + chr8_3:57773391-57773410 None:intergenic 40.0%
! CAAGAAGTCCATCATGCTTT+TGG + chr8_3:57773489-57773508 None:intergenic 40.0%
CAGCAATGATTGTAATGTCG+TGG + chr8_3:57773588-57773607 None:intergenic 40.0%
CGACATTACAATCATTGCTG+AGG - chr8_3:57773588-57773607 Msa1297460:CDS 40.0%
CTGTCTGCTGATATGTTCAT+TGG + chr8_3:57771924-57771943 None:intergenic 40.0%
!! CGATCTCTTTCTAAGACAAG+AGG + chr8_3:57772015-57772034 None:intergenic 40.0%
! CGGGTAATTTGTAGTTCAGT+CGG - chr8_3:57772033-57772052 Msa1297460:CDS 40.0%
GGAAATCACAACAAAACGCA+CGG + chr8_3:57772118-57772137 None:intergenic 40.0%
!! TGCGTTTTGTTGTGATTTCC+AGG - chr8_3:57772118-57772137 Msa1297460:CDS 40.0%
!! GCGTTTTGTTGTGATTTCCA+GGG - chr8_3:57772119-57772138 Msa1297460:CDS 40.0%
!! CGTTTTGTTGTGATTTCCAG+GGG - chr8_3:57772120-57772139 Msa1297460:CDS 40.0%
! AAGCTAGTATTTAAAGCCCC+TGG + chr8_3:57772139-57772158 None:intergenic 40.0%
ACGGAGTTTGATGGAAATCA+CGG + chr8_3:57772171-57772190 None:intergenic 40.0%
GTTTGCAAAACGGAGTTTGA+TGG + chr8_3:57772180-57772199 None:intergenic 40.0%
CATTTGTGAACCAACTGAAG+TGG + chr8_3:57772245-57772264 None:intergenic 40.0%
TCTTTGTTCCTCAAAGGCAA+TGG + chr8_3:57772396-57772415 None:intergenic 40.0%
AGTCTCTCTTTGTTCCTCAA+AGG + chr8_3:57772402-57772421 None:intergenic 40.0%
TGAGATGACTGAAAAGAGGA+TGG + chr8_3:57772584-57772603 None:intergenic 40.0%
CCGTATAAATCTGTTGGGTT+TGG + chr8_3:57772626-57772645 None:intergenic 40.0%
! TTCAGTGTCATTGCCCAATT+TGG - chr8_3:57772673-57772692 Msa1297460:CDS 40.0%
ACTCATTCCTGACCTAAAGA+AGG - chr8_3:57772862-57772881 Msa1297460:CDS 40.0%
CTTCTTACCTTCTTTAGGTC+AGG + chr8_3:57772872-57772891 None:intergenic 40.0%
CTTTAGATCGAAGACATACC+AGG - chr8_3:57773126-57773145 Msa1297460:CDS 40.0%
AACGCTCTTTAAGCTCTTTG+AGG + chr8_3:57773300-57773319 None:intergenic 40.0%
CACAAAGGAAGATCAATCGA+TGG - chr8_3:57773351-57773370 Msa1297460:intron 40.0%
AAAGGAAGATCAATCGATGG+TGG - chr8_3:57773354-57773373 Msa1297460:intron 40.0%
! ACAATAGTGGTCTGGTTTGT+TGG + chr8_3:57773383-57773402 None:intergenic 40.0%
TCAGTTTCACAATAGTGGTC+TGG + chr8_3:57773391-57773410 None:intergenic 40.0%
! CAAGAAGTCCATCATGCTTT+TGG + chr8_3:57773489-57773508 None:intergenic 40.0%
CAGCAATGATTGTAATGTCG+TGG + chr8_3:57773588-57773607 None:intergenic 40.0%
CGACATTACAATCATTGCTG+AGG - chr8_3:57773588-57773607 Msa1297460:CDS 40.0%
ACAACAAAACGCACGGATAC+AGG + chr8_3:57772111-57772130 None:intergenic 45.0%
AATCATCGTGCAGGAAAAGG+TGG - chr8_3:57772280-57772299 Msa1297460:intron 45.0%
AGAGTTTCTCTCACGTGACA+TGG - chr8_3:57772364-57772383 Msa1297460:intron 45.0%
GAATGTTTCGCTTAGAGTGG+TGG + chr8_3:57772441-57772460 None:intergenic 45.0%
CTGAAAAGAGGATGGAGATG+CGG + chr8_3:57772576-57772595 None:intergenic 45.0%
!! GGGTTTGGGTTGTCAAAAGA+CGG + chr8_3:57772611-57772630 None:intergenic 45.0%
TTGGGCAATGACACTGAAGT+GGG + chr8_3:57772671-57772690 None:intergenic 45.0%
ATTGGGCAATGACACTGAAG+TGG + chr8_3:57772672-57772691 None:intergenic 45.0%
GAGTTCTGCAAGAGCAATGA+AGG + chr8_3:57772846-57772865 None:intergenic 45.0%
ATATATTCGACCGAGACACC+TGG + chr8_3:57773147-57773166 None:intergenic 45.0%
!! TTGGTGATGCTACTGCTATC+AGG - chr8_3:57773416-57773435 Msa1297460:intron 45.0%
! TGGTGATGCTACTGCTATCA+GGG - chr8_3:57773417-57773436 Msa1297460:intron 45.0%
!! AGGGTAGAAGCAAAAGTGTC+AGG - chr8_3:57773436-57773455 Msa1297460:intron 45.0%
!! GGGTAGAAGCAAAAGTGTCA+GGG - chr8_3:57773437-57773456 Msa1297460:intron 45.0%
! ATCCACTGCCAAAAGCATGA+TGG - chr8_3:57773478-57773497 Msa1297460:intron 45.0%
GTCGTGGAAAGAATCTCCAA+AGG + chr8_3:57773572-57773591 None:intergenic 45.0%
ACAACAAAACGCACGGATAC+AGG + chr8_3:57772111-57772130 None:intergenic 45.0%
AATCATCGTGCAGGAAAAGG+TGG - chr8_3:57772280-57772299 Msa1297460:intron 45.0%
AGAGTTTCTCTCACGTGACA+TGG - chr8_3:57772364-57772383 Msa1297460:intron 45.0%
GAATGTTTCGCTTAGAGTGG+TGG + chr8_3:57772441-57772460 None:intergenic 45.0%
CTGAAAAGAGGATGGAGATG+CGG + chr8_3:57772576-57772595 None:intergenic 45.0%
!! GGGTTTGGGTTGTCAAAAGA+CGG + chr8_3:57772611-57772630 None:intergenic 45.0%
TTGGGCAATGACACTGAAGT+GGG + chr8_3:57772671-57772690 None:intergenic 45.0%
ATTGGGCAATGACACTGAAG+TGG + chr8_3:57772672-57772691 None:intergenic 45.0%
GAGTTCTGCAAGAGCAATGA+AGG + chr8_3:57772846-57772865 None:intergenic 45.0%
ATATATTCGACCGAGACACC+TGG + chr8_3:57773147-57773166 None:intergenic 45.0%
!! TTGGTGATGCTACTGCTATC+AGG - chr8_3:57773416-57773435 Msa1297460:intron 45.0%
! TGGTGATGCTACTGCTATCA+GGG - chr8_3:57773417-57773436 Msa1297460:intron 45.0%
!! AGGGTAGAAGCAAAAGTGTC+AGG - chr8_3:57773436-57773455 Msa1297460:intron 45.0%
!! GGGTAGAAGCAAAAGTGTCA+GGG - chr8_3:57773437-57773456 Msa1297460:intron 45.0%
! ATCCACTGCCAAAAGCATGA+TGG - chr8_3:57773478-57773497 Msa1297460:intron 45.0%
GTCGTGGAAAGAATCTCCAA+AGG + chr8_3:57773572-57773591 None:intergenic 45.0%
ACAAAACGCACGGATACAGG+AGG + chr8_3:57772108-57772127 None:intergenic 50.0%
! GAACTTGCTTGATGCTGACG+TGG - chr8_3:57772337-57772356 Msa1297460:intron 50.0%
CGAAGACATACCAGGTGTCT+CGG - chr8_3:57773134-57773153 Msa1297460:CDS 50.0%
! GTCCATCATGCTTTTGGCAG+TGG + chr8_3:57773483-57773502 None:intergenic 50.0%
ACAAAACGCACGGATACAGG+AGG + chr8_3:57772108-57772127 None:intergenic 50.0%
! GAACTTGCTTGATGCTGACG+TGG - chr8_3:57772337-57772356 Msa1297460:intron 50.0%
CGAAGACATACCAGGTGTCT+CGG - chr8_3:57773134-57773153 Msa1297460:CDS 50.0%
! GTCCATCATGCTTTTGGCAG+TGG + chr8_3:57773483-57773502 None:intergenic 50.0%
! GGCTAGTGCCATTGCCTTTG+AGG - chr8_3:57772385-57772404 Msa1297460:intron 55.0%
! GGCTAGTGCCATTGCCTTTG+AGG - chr8_3:57772385-57772404 Msa1297460:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57771900 57773630 57771900 ID=Msa1297460;Name=Msa1297460
chr8_3 mRNA 57771900 57773630 57771900 ID=Msa1297460-mRNA-1;Parent=Msa1297460;Name=Msa1297460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|341
chr8_3 exon 57773568 57773630 57773568 ID=Msa1297460-mRNA-1:exon:16549;Parent=Msa1297460-mRNA-1
chr8_3 exon 57772647 57773237 57772647 ID=Msa1297460-mRNA-1:exon:16548;Parent=Msa1297460-mRNA-1
chr8_3 exon 57771900 57772271 57771900 ID=Msa1297460-mRNA-1:exon:16547;Parent=Msa1297460-mRNA-1
chr8_3 CDS 57773568 57773630 57773568 ID=Msa1297460-mRNA-1:cds;Parent=Msa1297460-mRNA-1
chr8_3 CDS 57772647 57773237 57772647 ID=Msa1297460-mRNA-1:cds;Parent=Msa1297460-mRNA-1
chr8_3 CDS 57771900 57772271 57771900 ID=Msa1297460-mRNA-1:cds;Parent=Msa1297460-mRNA-1
Gene Sequence

>Msa1297460

ATGGAGCAAATCAACAATACACCAATGAACATATCAGCAGACAGAACCTTGTTATTTGATTTGGAAAAGGTGGATGAATACATGTTATTTGACAAGGAATGCTACTTGAACTTGCTTGATGCTGACGTGGTAGAAGAGTTTCTCTCACGTGACATGGCTAGTGCCATTGCCTTTGAGGAACAAAGAGAGACTCTACAACAATGCATTTCCACCACTCTAAGCGAAACATTCAATGGTGAAACAAGTTTTGAGTCTTTTGACTTTGATTTTGAGAATCCAACCAAGAAGCTGAAATTTTTTGATCAAAGTAACAACATAACCAAAAGCTTTTCACAACAAATTTCCGCATCTCCATCCTCTTTTCAGTCATCTCAGATTCCGTCTTTTGACAACCCAAACCCAACAGATTTATACGGGTTTGATCAAAAACAGAAAGAACCCACTTCAGTGTCATTGCCCAATTTGGATAACACACGTTTTTCAGCACAACCCTCAATTGAGTCTTCAAAAAATCAGAACTTGGAAACTAAAACATCACAATCTAAGAGGTCTTCGGCTCATGTAAAAGATCACATTATGGTTGAGAGAAAACGAAGAGAGAAACTCGGTCAAGCCTTCATTGCTCTTGCAGAACTCATTCCTGACCTAAAGAAGAAGGACAAGGCTTCAGTATTAGCAGATACAATCAAATACCTCAAAGAGCTTAAAGAGCGTTTGTCAATTTTAGAAGAAGAAAAAGGGAAGAACACAAAGGAAGATCAATCGATGGTGGTTTCCAACAAACCAGACCACTATTGTGAAACTGAAAGTGTTGGTGATGCTACTGCTATCAGGGTAGAAGCAAAAGTGTCAGGGAAAAAGATGTTGATTAGGATCCACTGCCAAAAGCATGATGGACTTCTTGTTAAAGTCATCACTGAGATTCAAAGTTTTCAACTATTAGTTGTCAATAACCGTATTTTAGCCTTTGGAGATTCTTTCCACGACATTACAATCATTGCTGAGGTAAAGGACATTCTCTTTTAA

Protein sequence

>Msa1297460

MEQINNTPMNISADRTLLFDLEKVDEYMLFDKECYLNLLDADVVEEFLSRDMASAIAFEEQRETLQQCISTTLSETFNGETSFESFDFDFENPTKKLKFFDQSNNITKSFSQQISASPSSFQSSQIPSFDNPNPTDLYGFDQKQKEPTSVSLPNLDNTRFSAQPSIESSKNQNLETKTSQSKRSSAHVKDHIMVERKRREKLGQAFIALAELIPDLKKKDKASVLADTIKYLKELKERLSILEEEKGKNTKEDQSMVVSNKPDHYCETESVGDATAIRVEAKVSGKKMLIRIHCQKHDGLLVKVITEIQSFQLLVVNNRILAFGDSFHDITIIAEVKDILF*