Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297460 | XP_013457519.1 | 81.686 | 344 | 32 | 5 | 1 | 338 | 1 | 319 | 0.0 | 545 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297460 | sp|Q8S3F1|BH020_ARATH | 33.937 | 221 | 118 | 3 | 138 | 336 | 85 | 299 | 9.66e-32 | 124 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297460 | A0A072V0A3 | 81.686 | 344 | 32 | 5 | 1 | 338 | 1 | 319 | 0.0 | 545 |
Gene ID | Type | Classification |
---|---|---|
Msa1297460 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0045810 | Msa1297460 | 0.806823 | 6.820190e-50 | -8.615850e-47 |
Msa0106540 | Msa1297460 | 0.807750 | 4.339613e-50 | -8.615850e-47 |
Msa0604190 | Msa1297460 | 0.820398 | 7.006462e-53 | -8.615850e-47 |
Msa0685020 | Msa1297460 | 0.827488 | 1.521897e-54 | -8.615850e-47 |
Msa0776640 | Msa1297460 | 0.801296 | 9.628198e-49 | -8.615850e-47 |
Msa0825920 | Msa1297460 | 0.800862 | 1.180770e-48 | -8.615850e-47 |
Msa0139500 | Msa1297460 | 0.803168 | 3.964757e-49 | -8.615850e-47 |
Msa1250440 | Msa1297460 | 0.859968 | 2.863742e-63 | -8.615850e-47 |
Msa1297460 | Msa1405830 | 0.808222 | 3.442761e-50 | -8.615850e-47 |
Msa1205900 | Msa1297460 | 0.866878 | 2.065129e-65 | -8.615850e-47 |
Msa0549130 | Msa1297460 | 0.810016 | 1.421281e-50 | -8.615850e-47 |
Msa0865420 | Msa1297460 | 0.803152 | 3.995798e-49 | -8.615850e-47 |
Msa0880910 | Msa1297460 | 0.810151 | 1.329220e-50 | -8.615850e-47 |
Msa0967780 | Msa1297460 | 0.813067 | 3.087613e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297460 | MtrunA17_Chr4g0054621 | 81.686 | 344 | 32 | 5 | 1 | 338 | 1 | 319 | 0.0 | 545 |
Msa1297460 | MtrunA17_Chr4g0054581 | 50.670 | 373 | 132 | 15 | 1 | 338 | 1 | 356 | 2.57e-93 | 283 |
Msa1297460 | MtrunA17_Chr2g0307131 | 49.014 | 355 | 138 | 15 | 1 | 336 | 1 | 331 | 3.28e-81 | 251 |
Msa1297460 | MtrunA17_Chr6g0468461 | 49.143 | 350 | 131 | 15 | 1 | 339 | 1 | 314 | 1.19e-78 | 244 |
Msa1297460 | MtrunA17_Chr2g0307141 | 45.506 | 356 | 153 | 14 | 1 | 336 | 1 | 335 | 5.86e-76 | 238 |
Msa1297460 | MtrunA17_Chr4g0033281 | 45.882 | 340 | 145 | 9 | 1 | 338 | 1 | 303 | 8.61e-76 | 236 |
Msa1297460 | MtrunA17_Chr6g0468491 | 47.720 | 329 | 116 | 15 | 24 | 336 | 1 | 289 | 1.32e-73 | 230 |
Msa1297460 | MtrunA17_Chr4g0033291 | 45.322 | 342 | 147 | 12 | 1 | 338 | 1 | 306 | 8.73e-71 | 223 |
Msa1297460 | MtrunA17_Chr4g0033391 | 44.606 | 343 | 140 | 14 | 1 | 338 | 1 | 298 | 2.50e-69 | 219 |
Msa1297460 | MtrunA17_Chr7g0225901 | 48.193 | 249 | 88 | 10 | 101 | 339 | 26 | 243 | 2.68e-55 | 181 |
Msa1297460 | MtrunA17_Chr5g0400621 | 40.061 | 327 | 153 | 9 | 17 | 336 | 19 | 309 | 6.32e-48 | 164 |
Msa1297460 | MtrunA17_Chr5g0400641 | 52.288 | 153 | 63 | 2 | 193 | 337 | 1 | 151 | 3.08e-42 | 144 |
Msa1297460 | MtrunA17_Chr5g0400661 | 38.333 | 240 | 112 | 4 | 124 | 336 | 84 | 314 | 1.90e-39 | 142 |
Msa1297460 | MtrunA17_Chr2g0280161 | 36.111 | 288 | 148 | 9 | 77 | 341 | 60 | 334 | 1.58e-38 | 140 |
Msa1297460 | MtrunA17_Chr4g0054561 | 41.071 | 168 | 91 | 3 | 175 | 336 | 140 | 305 | 9.92e-34 | 127 |
Msa1297460 | MtrunA17_Chr4g0054551 | 41.667 | 168 | 90 | 3 | 175 | 336 | 140 | 305 | 3.00e-33 | 125 |
Msa1297460 | MtrunA17_Chr4g0002801 | 37.872 | 235 | 117 | 7 | 120 | 336 | 87 | 310 | 3.57e-33 | 125 |
Msa1297460 | MtrunA17_Chr5g0400671 | 32.117 | 274 | 165 | 6 | 81 | 336 | 33 | 303 | 2.77e-32 | 122 |
Msa1297460 | MtrunA17_Chr4g0054571 | 34.752 | 282 | 132 | 6 | 85 | 340 | 58 | 313 | 1.53e-31 | 121 |
Msa1297460 | MtrunA17_Chr4g0049331 | 40.351 | 171 | 92 | 2 | 174 | 336 | 119 | 287 | 3.16e-31 | 119 |
Msa1297460 | MtrunA17_Chr8g0336681 | 34.413 | 247 | 121 | 8 | 111 | 338 | 93 | 317 | 1.58e-30 | 118 |
Msa1297460 | MtrunA17_Chr4g0002781 | 41.304 | 184 | 89 | 5 | 172 | 338 | 150 | 331 | 8.62e-30 | 116 |
Msa1297460 | MtrunA17_Chr2g0333621 | 32.766 | 235 | 129 | 6 | 116 | 338 | 76 | 293 | 4.04e-28 | 111 |
Msa1297460 | MtrunA17_Chr2g0333611 | 37.037 | 162 | 94 | 2 | 183 | 338 | 38 | 197 | 7.15e-28 | 108 |
Msa1297460 | MtrunA17_Chr2g0333641 | 35.961 | 203 | 110 | 8 | 146 | 338 | 97 | 289 | 6.26e-26 | 105 |
Msa1297460 | MtrunA17_Chr7g0249811 | 27.170 | 265 | 177 | 5 | 76 | 336 | 56 | 308 | 6.26e-24 | 100 |
Msa1297460 | MtrunA17_Chr2g0333541 | 31.839 | 223 | 137 | 7 | 126 | 338 | 33 | 250 | 1.31e-19 | 87.4 |
Msa1297460 | MtrunA17_Chr4g0002851 | 38.095 | 126 | 66 | 2 | 213 | 338 | 65 | 178 | 1.55e-18 | 82.4 |
Msa1297460 | MtrunA17_Chr4g0002831 | 36.296 | 135 | 82 | 2 | 204 | 338 | 56 | 186 | 1.60e-18 | 82.8 |
Msa1297460 | MtrunA17_Chr7g0233441 | 37.398 | 123 | 73 | 2 | 216 | 338 | 60 | 178 | 7.44e-18 | 80.9 |
Msa1297460 | MtrunA17_Chr7g0275821 | 31.333 | 150 | 94 | 4 | 190 | 335 | 252 | 396 | 3.28e-15 | 76.3 |
Msa1297460 | MtrunA17_Chr1g0185621 | 29.012 | 162 | 96 | 3 | 190 | 337 | 475 | 631 | 6.75e-14 | 72.8 |
Msa1297460 | MtrunA17_Chr8g0366751 | 32.168 | 143 | 80 | 3 | 190 | 315 | 462 | 604 | 1.04e-13 | 72.0 |
Msa1297460 | MtrunA17_Chr5g0411341 | 27.684 | 177 | 95 | 5 | 166 | 315 | 465 | 635 | 2.22e-11 | 65.1 |
Msa1297460 | MtrunA17_Chr8g0346161 | 30.882 | 136 | 79 | 6 | 190 | 313 | 291 | 423 | 3.07e-11 | 64.3 |
Msa1297460 | MtrunA17_Chr3g0131691 | 26.702 | 191 | 120 | 5 | 165 | 338 | 274 | 461 | 9.28e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1297460 | AT2G22760.2 | 41.176 | 170 | 87 | 4 | 178 | 336 | 107 | 274 | 6.93e-33 | 124 |
Msa1297460 | AT2G22770.1 | 33.937 | 221 | 118 | 3 | 138 | 336 | 85 | 299 | 9.82e-33 | 124 |
Msa1297460 | AT2G22760.1 | 40.588 | 170 | 88 | 4 | 178 | 336 | 107 | 274 | 3.23e-32 | 122 |
Msa1297460 | AT4G37850.2 | 36.444 | 225 | 123 | 6 | 123 | 335 | 88 | 304 | 1.11e-31 | 121 |
Msa1297460 | AT4G37850.1 | 36.444 | 225 | 123 | 6 | 123 | 335 | 88 | 304 | 1.11e-31 | 121 |
Msa1297460 | AT2G22750.2 | 41.860 | 172 | 87 | 5 | 176 | 335 | 111 | 281 | 8.29e-28 | 110 |
Msa1297460 | AT2G22750.4 | 41.860 | 172 | 87 | 5 | 176 | 335 | 139 | 309 | 8.83e-28 | 111 |
Msa1297460 | AT2G22750.1 | 41.860 | 172 | 87 | 5 | 176 | 335 | 111 | 281 | 9.29e-28 | 110 |
Msa1297460 | AT2G22750.3 | 41.860 | 172 | 87 | 5 | 176 | 335 | 139 | 309 | 1.07e-27 | 111 |
Msa1297460 | AT2G22750.5 | 41.860 | 172 | 87 | 5 | 176 | 335 | 135 | 305 | 1.14e-27 | 110 |
Msa1297460 | AT5G46760.1 | 34.454 | 119 | 68 | 2 | 190 | 298 | 415 | 533 | 1.50e-13 | 72.0 |
Msa1297460 | AT2G46510.1 | 37.634 | 93 | 53 | 2 | 190 | 279 | 395 | 485 | 1.72e-13 | 71.6 |
Msa1297460 | AT4G17880.1 | 33.103 | 145 | 84 | 3 | 190 | 321 | 416 | 560 | 2.02e-13 | 71.6 |
Msa1297460 | AT1G32640.1 | 26.007 | 273 | 171 | 9 | 70 | 315 | 316 | 584 | 1.24e-12 | 69.3 |
Msa1297460 | AT4G09820.1 | 33.043 | 115 | 63 | 2 | 191 | 305 | 364 | 464 | 1.30e-12 | 68.9 |
Msa1297460 | AT1G01260.1 | 28.571 | 126 | 74 | 2 | 169 | 294 | 412 | 521 | 3.06e-12 | 68.2 |
Msa1297460 | AT1G01260.2 | 28.571 | 126 | 74 | 2 | 169 | 294 | 412 | 521 | 3.06e-12 | 68.2 |
Msa1297460 | AT1G01260.3 | 28.571 | 126 | 74 | 2 | 169 | 294 | 412 | 521 | 3.06e-12 | 68.2 |
Msa1297460 | AT4G16430.1 | 30.968 | 155 | 90 | 5 | 100 | 246 | 231 | 376 | 5.34e-11 | 63.9 |
Msa1297460 | AT3G61950.6 | 29.197 | 137 | 87 | 4 | 190 | 317 | 128 | 263 | 7.73e-11 | 62.8 |
Find 56 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAGTGTCATTGCCCAATT+TGG | 0.159846 | 8_3:-57772835 | Msa1297460:CDS |
AAAACGTGTGTTATCCAAAT+TGG | 0.202416 | 8_3:+57772821 | None:intergenic |
CAGAACCTTGTTATTTGATT+TGG | 0.256803 | 8_3:-57773567 | Msa1297460:intron |
CCAAACCCAACAGATTTATA+CGG | 0.283498 | 8_3:-57772885 | Msa1297460:CDS |
CAAGAAGTCCATCATGCTTT+TGG | 0.296888 | 8_3:+57772022 | None:intergenic |
CGTATAAATCTGTTGGGTTT+GGG | 0.304768 | 8_3:+57772886 | None:intergenic |
CTGTCTGCTGATATGTTCAT+TGG | 0.315898 | 8_3:+57773587 | None:intergenic |
AGTTACTTCTTACCTTCTTT+AGG | 0.329290 | 8_3:+57772634 | None:intergenic |
ACAATAGTGGTCTGGTTTGT+TGG | 0.341236 | 8_3:+57772128 | None:intergenic |
CCGTATAAATCTGTTGGGTT+TGG | 0.355612 | 8_3:+57772885 | None:intergenic |
AATTTGTTGTGAAAAGCTTT+TGG | 0.355869 | 8_3:+57772959 | None:intergenic |
GGCTAGTGCCATTGCCTTTG+AGG | 0.361619 | 8_3:-57773123 | Msa1297460:CDS |
AACGCTCTTTAAGCTCTTTG+AGG | 0.388426 | 8_3:+57772211 | None:intergenic |
CTTCTTACCTTCTTTAGGTC+AGG | 0.391987 | 8_3:+57772639 | None:intergenic |
TCATGTAAAAGATCACATTA+TGG | 0.398549 | 8_3:-57772721 | Msa1297460:CDS |
TTGGTGATGCTACTGCTATC+AGG | 0.398588 | 8_3:-57772092 | Msa1297460:CDS |
CACTTTCAGTTTCACAATAG+TGG | 0.411282 | 8_3:+57772115 | None:intergenic |
AGGGTAGAAGCAAAAGTGTC+AGG | 0.446583 | 8_3:-57772072 | Msa1297460:CDS |
TCAGTTTCACAATAGTGGTC+TGG | 0.454097 | 8_3:+57772120 | None:intergenic |
AAACGTGTGTTATCCAAATT+GGG | 0.461557 | 8_3:+57772822 | None:intergenic |
TACAATCATTGCTGAGGTAA+AGG | 0.467521 | 8_3:-57771914 | Msa1297460:CDS |
TCAAACCCGTATAAATCTGT+TGG | 0.488589 | 8_3:+57772879 | None:intergenic |
CAAACCCGTATAAATCTGTT+GGG | 0.491045 | 8_3:+57772880 | None:intergenic |
GAGTTCTGCAAGAGCAATGA+AGG | 0.495896 | 8_3:+57772665 | None:intergenic |
ATCACAATCTAAGAGGTCTT+CGG | 0.516297 | 8_3:-57772745 | Msa1297460:CDS |
CAAACCCAACAGATTTATAC+GGG | 0.531352 | 8_3:-57772884 | Msa1297460:CDS |
CTAAAACATCACAATCTAAG+AGG | 0.533656 | 8_3:-57772752 | Msa1297460:CDS |
AATCTCCAAAGGCTAAAATA+CGG | 0.534934 | 8_3:+57771950 | None:intergenic |
GGGTTTGGGTTGTCAAAAGA+CGG | 0.535552 | 8_3:+57772900 | None:intergenic |
ACTCATTCCTGACCTAAAGA+AGG | 0.552914 | 8_3:-57772646 | Msa1297460:intron |
GAATGTTTCGCTTAGAGTGG+TGG | 0.560814 | 8_3:+57773070 | None:intergenic |
AGTCTCTCTTTGTTCCTCAA+AGG | 0.562733 | 8_3:+57773109 | None:intergenic |
TGAGATGACTGAAAAGAGGA+TGG | 0.564225 | 8_3:+57772927 | None:intergenic |
TCTTTGTTCCTCAAAGGCAA+TGG | 0.566921 | 8_3:+57773115 | None:intergenic |
TGGTGATGCTACTGCTATCA+GGG | 0.568737 | 8_3:-57772091 | Msa1297460:CDS |
ATTGAATGTTTCGCTTAGAG+TGG | 0.570806 | 8_3:+57773067 | None:intergenic |
ATCCACTGCCAAAAGCATGA+TGG | 0.574310 | 8_3:-57772030 | Msa1297460:CDS |
AATCTGAGATGACTGAAAAG+AGG | 0.576642 | 8_3:+57772923 | None:intergenic |
ACTCTAAGCGAAACATTCAA+TGG | 0.582474 | 8_3:-57773065 | Msa1297460:CDS |
CAGCAATGATTGTAATGTCG+TGG | 0.584079 | 8_3:+57771923 | None:intergenic |
GGGTAGAAGCAAAAGTGTCA+GGG | 0.600504 | 8_3:-57772071 | Msa1297460:CDS |
ATTGGGCAATGACACTGAAG+TGG | 0.602756 | 8_3:+57772839 | None:intergenic |
AGAGTTTCTCTCACGTGACA+TGG | 0.613188 | 8_3:-57773144 | Msa1297460:CDS |
TGAATACATGTTATTTGACA+AGG | 0.622791 | 8_3:-57773204 | Msa1297460:CDS |
AATCATCGTGCAGGAAAAGG+TGG | 0.627645 | 8_3:-57773228 | Msa1297460:intron |
TTGGGCAATGACACTGAAGT+GGG | 0.628306 | 8_3:+57772840 | None:intergenic |
TCTCACCAAATCAAATAACA+AGG | 0.637420 | 8_3:+57773562 | None:intergenic |
ATATGTTAATTAGAAGGACA+AGG | 0.637697 | 8_3:-57772262 | Msa1297460:intron |
CTGAAAAGAGGATGGAGATG+CGG | 0.641434 | 8_3:+57772935 | None:intergenic |
CACAAAGGAAGATCAATCGA+TGG | 0.644880 | 8_3:-57772157 | Msa1297460:CDS |
GAACTTGCTTGATGCTGACG+TGG | 0.647274 | 8_3:-57773171 | Msa1297460:CDS |
CGACATTACAATCATTGCTG+AGG | 0.658041 | 8_3:-57771920 | Msa1297460:CDS |
GTCGTGGAAAGAATCTCCAA+AGG | 0.662563 | 8_3:+57771939 | None:intergenic |
TATTGTGAAACTGAAAGTGT+TGG | 0.666038 | 8_3:-57772111 | Msa1297460:CDS |
AGAAAACGAAGAGAGAAACT+CGG | 0.671233 | 8_3:-57772693 | Msa1297460:CDS |
AAAGGAAGATCAATCGATGG+TGG | 0.686344 | 8_3:-57772154 | Msa1297460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTATTATATATAAAAACAAA+TGG | + | chr8_3:57773062-57773081 | None:intergenic | 10.0% |
!! | TATATAATAGTAAAAGAATA+TGG | - | chr8_3:57773072-57773091 | Msa1297460:CDS | 10.0% |
!! | ATAATTTAAGAAAATTAAAG+TGG | + | chr8_3:57773190-57773209 | None:intergenic | 10.0% |
!! | CTATTATATATAAAAACAAA+TGG | + | chr8_3:57773062-57773081 | None:intergenic | 10.0% |
!! | TATATAATAGTAAAAGAATA+TGG | - | chr8_3:57773072-57773091 | Msa1297460:CDS | 10.0% |
!! | ATAATTTAAGAAAATTAAAG+TGG | + | chr8_3:57773190-57773209 | None:intergenic | 10.0% |
!! | TGTAAAATATGTTAATTAGA+AGG | - | chr8_3:57773240-57773259 | Msa1297460:intron | 15.0% |
!! | TGTAAAATATGTTAATTAGA+AGG | - | chr8_3:57773240-57773259 | Msa1297460:intron | 15.0% |
!!! | AACTAGCTAAACTTTATTTA+CGG | + | chr8_3:57772060-57772079 | None:intergenic | 20.0% |
!! | TAATACATGGTTAAAGATAT+AGG | + | chr8_3:57772976-57772995 | None:intergenic | 20.0% |
!!! | TTATAAGTTTTGCTAATACA+TGG | + | chr8_3:57772989-57773008 | None:intergenic | 20.0% |
!!! | TCAATTTTAGAAGAAGAAAA+AGG | - | chr8_3:57773322-57773341 | Msa1297460:intron | 20.0% |
!!! | CAATTTTAGAAGAAGAAAAA+GGG | - | chr8_3:57773323-57773342 | Msa1297460:intron | 20.0% |
!!! | AACTAGCTAAACTTTATTTA+CGG | + | chr8_3:57772060-57772079 | None:intergenic | 20.0% |
!! | TAATACATGGTTAAAGATAT+AGG | + | chr8_3:57772976-57772995 | None:intergenic | 20.0% |
!!! | TTATAAGTTTTGCTAATACA+TGG | + | chr8_3:57772989-57773008 | None:intergenic | 20.0% |
!!! | TCAATTTTAGAAGAAGAAAA+AGG | - | chr8_3:57773322-57773341 | Msa1297460:intron | 20.0% |
!!! | CAATTTTAGAAGAAGAAAAA+GGG | - | chr8_3:57773323-57773342 | Msa1297460:intron | 20.0% |
! | AAAAAAAAAACTTGAGAGAC+AGG | + | chr8_3:57771983-57772002 | None:intergenic | 25.0% |
!! | TGAATACATGTTATTTGACA+AGG | - | chr8_3:57772304-57772323 | Msa1297460:intron | 25.0% |
! | ATCAAAAAATTTCAGCTTCT+TGG | + | chr8_3:57772513-57772532 | None:intergenic | 25.0% |
!!! | AATTTGTTGTGAAAAGCTTT+TGG | + | chr8_3:57772552-57772571 | None:intergenic | 25.0% |
!!! | TTTTTTGAAGACTCAATTGA+GGG | + | chr8_3:57772722-57772741 | None:intergenic | 25.0% |
!!! | ATTTTTTGAAGACTCAATTG+AGG | + | chr8_3:57772723-57772742 | None:intergenic | 25.0% |
! | TCATGTAAAAGATCACATTA+TGG | - | chr8_3:57772787-57772806 | Msa1297460:CDS | 25.0% |
! | TATAGGTTAAAGATGTGTAT+TGG | + | chr8_3:57772959-57772978 | None:intergenic | 25.0% |
!! | TAATGTTAGATTTGTTTCGA+CGG | + | chr8_3:57773034-57773053 | None:intergenic | 25.0% |
! | ATATGTTAATTAGAAGGACA+AGG | - | chr8_3:57773246-57773265 | Msa1297460:intron | 25.0% |
! | AAAAAAAAAACTTGAGAGAC+AGG | + | chr8_3:57771983-57772002 | None:intergenic | 25.0% |
!! | TGAATACATGTTATTTGACA+AGG | - | chr8_3:57772304-57772323 | Msa1297460:intron | 25.0% |
! | ATCAAAAAATTTCAGCTTCT+TGG | + | chr8_3:57772513-57772532 | None:intergenic | 25.0% |
!!! | AATTTGTTGTGAAAAGCTTT+TGG | + | chr8_3:57772552-57772571 | None:intergenic | 25.0% |
!!! | TTTTTTGAAGACTCAATTGA+GGG | + | chr8_3:57772722-57772741 | None:intergenic | 25.0% |
!!! | ATTTTTTGAAGACTCAATTG+AGG | + | chr8_3:57772723-57772742 | None:intergenic | 25.0% |
! | TCATGTAAAAGATCACATTA+TGG | - | chr8_3:57772787-57772806 | Msa1297460:CDS | 25.0% |
! | TATAGGTTAAAGATGTGTAT+TGG | + | chr8_3:57772959-57772978 | None:intergenic | 25.0% |
!! | TAATGTTAGATTTGTTTCGA+CGG | + | chr8_3:57773034-57773053 | None:intergenic | 25.0% |
! | ATATGTTAATTAGAAGGACA+AGG | - | chr8_3:57773246-57773265 | Msa1297460:intron | 25.0% |
!! | CAGAACCTTGTTATTTGATT+TGG | - | chr8_3:57771941-57771960 | Msa1297460:CDS | 30.0% |
TCTCACCAAATCAAATAACA+AGG | + | chr8_3:57771949-57771968 | None:intergenic | 30.0% | |
GTTTCAGTCAAATTTGAACT+CGG | - | chr8_3:57772080-57772099 | Msa1297460:CDS | 30.0% | |
TTGATATTGCGTTTGCAAAA+CGG | + | chr8_3:57772190-57772209 | None:intergenic | 30.0% | |
TAATTCTTTAATCATCGTGC+AGG | - | chr8_3:57772271-57772290 | Msa1297460:intron | 30.0% | |
AAAAATTTCAGCTTCTTGGT+TGG | + | chr8_3:57772509-57772528 | None:intergenic | 30.0% | |
AAACGTGTGTTATCCAAATT+GGG | + | chr8_3:57772689-57772708 | None:intergenic | 30.0% | |
AAAACGTGTGTTATCCAAAT+TGG | + | chr8_3:57772690-57772709 | None:intergenic | 30.0% | |
GTCTTCAAAAAATCAGAACT+TGG | - | chr8_3:57772730-57772749 | Msa1297460:CDS | 30.0% | |
CTAAAACATCACAATCTAAG+AGG | - | chr8_3:57772756-57772775 | Msa1297460:CDS | 30.0% | |
AGTTACTTCTTACCTTCTTT+AGG | + | chr8_3:57772877-57772896 | None:intergenic | 30.0% | |
! | TATTGTGAAACTGAAAGTGT+TGG | - | chr8_3:57773397-57773416 | Msa1297460:intron | 30.0% |
!!! | AATAACCGTATTTTAGCCTT+TGG | - | chr8_3:57773553-57773572 | Msa1297460:intron | 30.0% |
AATCTCCAAAGGCTAAAATA+CGG | + | chr8_3:57773561-57773580 | None:intergenic | 30.0% | |
!! | CAGAACCTTGTTATTTGATT+TGG | - | chr8_3:57771941-57771960 | Msa1297460:CDS | 30.0% |
TCTCACCAAATCAAATAACA+AGG | + | chr8_3:57771949-57771968 | None:intergenic | 30.0% | |
GTTTCAGTCAAATTTGAACT+CGG | - | chr8_3:57772080-57772099 | Msa1297460:CDS | 30.0% | |
TTGATATTGCGTTTGCAAAA+CGG | + | chr8_3:57772190-57772209 | None:intergenic | 30.0% | |
TAATTCTTTAATCATCGTGC+AGG | - | chr8_3:57772271-57772290 | Msa1297460:intron | 30.0% | |
AAAAATTTCAGCTTCTTGGT+TGG | + | chr8_3:57772509-57772528 | None:intergenic | 30.0% | |
AAACGTGTGTTATCCAAATT+GGG | + | chr8_3:57772689-57772708 | None:intergenic | 30.0% | |
AAAACGTGTGTTATCCAAAT+TGG | + | chr8_3:57772690-57772709 | None:intergenic | 30.0% | |
GTCTTCAAAAAATCAGAACT+TGG | - | chr8_3:57772730-57772749 | Msa1297460:CDS | 30.0% | |
CTAAAACATCACAATCTAAG+AGG | - | chr8_3:57772756-57772775 | Msa1297460:CDS | 30.0% | |
AGTTACTTCTTACCTTCTTT+AGG | + | chr8_3:57772877-57772896 | None:intergenic | 30.0% | |
! | TATTGTGAAACTGAAAGTGT+TGG | - | chr8_3:57773397-57773416 | Msa1297460:intron | 30.0% |
!!! | AATAACCGTATTTTAGCCTT+TGG | - | chr8_3:57773553-57773572 | Msa1297460:intron | 30.0% |
AATCTCCAAAGGCTAAAATA+CGG | + | chr8_3:57773561-57773580 | None:intergenic | 30.0% | |
!! | GATCTCTTTCTAAGACAAGA+GGG | + | chr8_3:57772014-57772033 | None:intergenic | 35.0% |
CTCTTGTCTTAGAAAGAGAT+CGG | - | chr8_3:57772013-57772032 | Msa1297460:CDS | 35.0% | |
TCTTGTCTTAGAAAGAGATC+GGG | - | chr8_3:57772014-57772033 | Msa1297460:CDS | 35.0% | |
AGTTCATTAACCACTTCAGT+TGG | - | chr8_3:57772232-57772251 | Msa1297460:CDS | 35.0% | |
TTTAATCATCGTGCAGGAAA+AGG | - | chr8_3:57772277-57772296 | Msa1297460:intron | 35.0% | |
ATTGAATGTTTCGCTTAGAG+TGG | + | chr8_3:57772444-57772463 | None:intergenic | 35.0% | |
ACTCTAAGCGAAACATTCAA+TGG | - | chr8_3:57772443-57772462 | Msa1297460:intron | 35.0% | |
! | AATCTGAGATGACTGAAAAG+AGG | + | chr8_3:57772588-57772607 | None:intergenic | 35.0% |
CGTATAAATCTGTTGGGTTT+GGG | + | chr8_3:57772625-57772644 | None:intergenic | 35.0% | |
CCAAACCCAACAGATTTATA+CGG | - | chr8_3:57772623-57772642 | Msa1297460:intron | 35.0% | |
CAAACCCAACAGATTTATAC+GGG | - | chr8_3:57772624-57772643 | Msa1297460:intron | 35.0% | |
CAAACCCGTATAAATCTGTT+GGG | + | chr8_3:57772631-57772650 | None:intergenic | 35.0% | |
TCAAACCCGTATAAATCTGT+TGG | + | chr8_3:57772632-57772651 | None:intergenic | 35.0% | |
ATCACAATCTAAGAGGTCTT+CGG | - | chr8_3:57772763-57772782 | Msa1297460:CDS | 35.0% | |
AGAAAACGAAGAGAGAAACT+CGG | - | chr8_3:57772815-57772834 | Msa1297460:CDS | 35.0% | |
GACTAGTAAGACATAGTCAT+AGG | + | chr8_3:57773217-57773236 | None:intergenic | 35.0% | |
AGAAAAAGGGAAGAACACAA+AGG | - | chr8_3:57773336-57773355 | Msa1297460:intron | 35.0% | |
CACTTTCAGTTTCACAATAG+TGG | + | chr8_3:57773396-57773415 | None:intergenic | 35.0% | |
! | CAGGGAAAAAGATGTTGATT+AGG | - | chr8_3:57773455-57773474 | Msa1297460:intron | 35.0% |
TACAATCATTGCTGAGGTAA+AGG | - | chr8_3:57773594-57773613 | Msa1297460:CDS | 35.0% | |
!! | GATCTCTTTCTAAGACAAGA+GGG | + | chr8_3:57772014-57772033 | None:intergenic | 35.0% |
CTCTTGTCTTAGAAAGAGAT+CGG | - | chr8_3:57772013-57772032 | Msa1297460:CDS | 35.0% | |
TCTTGTCTTAGAAAGAGATC+GGG | - | chr8_3:57772014-57772033 | Msa1297460:CDS | 35.0% | |
AGTTCATTAACCACTTCAGT+TGG | - | chr8_3:57772232-57772251 | Msa1297460:CDS | 35.0% | |
TTTAATCATCGTGCAGGAAA+AGG | - | chr8_3:57772277-57772296 | Msa1297460:intron | 35.0% | |
ATTGAATGTTTCGCTTAGAG+TGG | + | chr8_3:57772444-57772463 | None:intergenic | 35.0% | |
ACTCTAAGCGAAACATTCAA+TGG | - | chr8_3:57772443-57772462 | Msa1297460:intron | 35.0% | |
! | AATCTGAGATGACTGAAAAG+AGG | + | chr8_3:57772588-57772607 | None:intergenic | 35.0% |
CGTATAAATCTGTTGGGTTT+GGG | + | chr8_3:57772625-57772644 | None:intergenic | 35.0% | |
CCAAACCCAACAGATTTATA+CGG | - | chr8_3:57772623-57772642 | Msa1297460:intron | 35.0% | |
CAAACCCAACAGATTTATAC+GGG | - | chr8_3:57772624-57772643 | Msa1297460:intron | 35.0% | |
CAAACCCGTATAAATCTGTT+GGG | + | chr8_3:57772631-57772650 | None:intergenic | 35.0% | |
TCAAACCCGTATAAATCTGT+TGG | + | chr8_3:57772632-57772651 | None:intergenic | 35.0% | |
ATCACAATCTAAGAGGTCTT+CGG | - | chr8_3:57772763-57772782 | Msa1297460:CDS | 35.0% | |
AGAAAACGAAGAGAGAAACT+CGG | - | chr8_3:57772815-57772834 | Msa1297460:CDS | 35.0% | |
GACTAGTAAGACATAGTCAT+AGG | + | chr8_3:57773217-57773236 | None:intergenic | 35.0% | |
AGAAAAAGGGAAGAACACAA+AGG | - | chr8_3:57773336-57773355 | Msa1297460:intron | 35.0% | |
CACTTTCAGTTTCACAATAG+TGG | + | chr8_3:57773396-57773415 | None:intergenic | 35.0% | |
! | CAGGGAAAAAGATGTTGATT+AGG | - | chr8_3:57773455-57773474 | Msa1297460:intron | 35.0% |
TACAATCATTGCTGAGGTAA+AGG | - | chr8_3:57773594-57773613 | Msa1297460:CDS | 35.0% | |
CTGTCTGCTGATATGTTCAT+TGG | + | chr8_3:57771924-57771943 | None:intergenic | 40.0% | |
!! | CGATCTCTTTCTAAGACAAG+AGG | + | chr8_3:57772015-57772034 | None:intergenic | 40.0% |
! | CGGGTAATTTGTAGTTCAGT+CGG | - | chr8_3:57772033-57772052 | Msa1297460:CDS | 40.0% |
GGAAATCACAACAAAACGCA+CGG | + | chr8_3:57772118-57772137 | None:intergenic | 40.0% | |
!! | TGCGTTTTGTTGTGATTTCC+AGG | - | chr8_3:57772118-57772137 | Msa1297460:CDS | 40.0% |
!! | GCGTTTTGTTGTGATTTCCA+GGG | - | chr8_3:57772119-57772138 | Msa1297460:CDS | 40.0% |
!! | CGTTTTGTTGTGATTTCCAG+GGG | - | chr8_3:57772120-57772139 | Msa1297460:CDS | 40.0% |
! | AAGCTAGTATTTAAAGCCCC+TGG | + | chr8_3:57772139-57772158 | None:intergenic | 40.0% |
ACGGAGTTTGATGGAAATCA+CGG | + | chr8_3:57772171-57772190 | None:intergenic | 40.0% | |
GTTTGCAAAACGGAGTTTGA+TGG | + | chr8_3:57772180-57772199 | None:intergenic | 40.0% | |
CATTTGTGAACCAACTGAAG+TGG | + | chr8_3:57772245-57772264 | None:intergenic | 40.0% | |
TCTTTGTTCCTCAAAGGCAA+TGG | + | chr8_3:57772396-57772415 | None:intergenic | 40.0% | |
AGTCTCTCTTTGTTCCTCAA+AGG | + | chr8_3:57772402-57772421 | None:intergenic | 40.0% | |
TGAGATGACTGAAAAGAGGA+TGG | + | chr8_3:57772584-57772603 | None:intergenic | 40.0% | |
CCGTATAAATCTGTTGGGTT+TGG | + | chr8_3:57772626-57772645 | None:intergenic | 40.0% | |
! | TTCAGTGTCATTGCCCAATT+TGG | - | chr8_3:57772673-57772692 | Msa1297460:CDS | 40.0% |
ACTCATTCCTGACCTAAAGA+AGG | - | chr8_3:57772862-57772881 | Msa1297460:CDS | 40.0% | |
CTTCTTACCTTCTTTAGGTC+AGG | + | chr8_3:57772872-57772891 | None:intergenic | 40.0% | |
CTTTAGATCGAAGACATACC+AGG | - | chr8_3:57773126-57773145 | Msa1297460:CDS | 40.0% | |
AACGCTCTTTAAGCTCTTTG+AGG | + | chr8_3:57773300-57773319 | None:intergenic | 40.0% | |
CACAAAGGAAGATCAATCGA+TGG | - | chr8_3:57773351-57773370 | Msa1297460:intron | 40.0% | |
AAAGGAAGATCAATCGATGG+TGG | - | chr8_3:57773354-57773373 | Msa1297460:intron | 40.0% | |
! | ACAATAGTGGTCTGGTTTGT+TGG | + | chr8_3:57773383-57773402 | None:intergenic | 40.0% |
TCAGTTTCACAATAGTGGTC+TGG | + | chr8_3:57773391-57773410 | None:intergenic | 40.0% | |
! | CAAGAAGTCCATCATGCTTT+TGG | + | chr8_3:57773489-57773508 | None:intergenic | 40.0% |
CAGCAATGATTGTAATGTCG+TGG | + | chr8_3:57773588-57773607 | None:intergenic | 40.0% | |
CGACATTACAATCATTGCTG+AGG | - | chr8_3:57773588-57773607 | Msa1297460:CDS | 40.0% | |
CTGTCTGCTGATATGTTCAT+TGG | + | chr8_3:57771924-57771943 | None:intergenic | 40.0% | |
!! | CGATCTCTTTCTAAGACAAG+AGG | + | chr8_3:57772015-57772034 | None:intergenic | 40.0% |
! | CGGGTAATTTGTAGTTCAGT+CGG | - | chr8_3:57772033-57772052 | Msa1297460:CDS | 40.0% |
GGAAATCACAACAAAACGCA+CGG | + | chr8_3:57772118-57772137 | None:intergenic | 40.0% | |
!! | TGCGTTTTGTTGTGATTTCC+AGG | - | chr8_3:57772118-57772137 | Msa1297460:CDS | 40.0% |
!! | GCGTTTTGTTGTGATTTCCA+GGG | - | chr8_3:57772119-57772138 | Msa1297460:CDS | 40.0% |
!! | CGTTTTGTTGTGATTTCCAG+GGG | - | chr8_3:57772120-57772139 | Msa1297460:CDS | 40.0% |
! | AAGCTAGTATTTAAAGCCCC+TGG | + | chr8_3:57772139-57772158 | None:intergenic | 40.0% |
ACGGAGTTTGATGGAAATCA+CGG | + | chr8_3:57772171-57772190 | None:intergenic | 40.0% | |
GTTTGCAAAACGGAGTTTGA+TGG | + | chr8_3:57772180-57772199 | None:intergenic | 40.0% | |
CATTTGTGAACCAACTGAAG+TGG | + | chr8_3:57772245-57772264 | None:intergenic | 40.0% | |
TCTTTGTTCCTCAAAGGCAA+TGG | + | chr8_3:57772396-57772415 | None:intergenic | 40.0% | |
AGTCTCTCTTTGTTCCTCAA+AGG | + | chr8_3:57772402-57772421 | None:intergenic | 40.0% | |
TGAGATGACTGAAAAGAGGA+TGG | + | chr8_3:57772584-57772603 | None:intergenic | 40.0% | |
CCGTATAAATCTGTTGGGTT+TGG | + | chr8_3:57772626-57772645 | None:intergenic | 40.0% | |
! | TTCAGTGTCATTGCCCAATT+TGG | - | chr8_3:57772673-57772692 | Msa1297460:CDS | 40.0% |
ACTCATTCCTGACCTAAAGA+AGG | - | chr8_3:57772862-57772881 | Msa1297460:CDS | 40.0% | |
CTTCTTACCTTCTTTAGGTC+AGG | + | chr8_3:57772872-57772891 | None:intergenic | 40.0% | |
CTTTAGATCGAAGACATACC+AGG | - | chr8_3:57773126-57773145 | Msa1297460:CDS | 40.0% | |
AACGCTCTTTAAGCTCTTTG+AGG | + | chr8_3:57773300-57773319 | None:intergenic | 40.0% | |
CACAAAGGAAGATCAATCGA+TGG | - | chr8_3:57773351-57773370 | Msa1297460:intron | 40.0% | |
AAAGGAAGATCAATCGATGG+TGG | - | chr8_3:57773354-57773373 | Msa1297460:intron | 40.0% | |
! | ACAATAGTGGTCTGGTTTGT+TGG | + | chr8_3:57773383-57773402 | None:intergenic | 40.0% |
TCAGTTTCACAATAGTGGTC+TGG | + | chr8_3:57773391-57773410 | None:intergenic | 40.0% | |
! | CAAGAAGTCCATCATGCTTT+TGG | + | chr8_3:57773489-57773508 | None:intergenic | 40.0% |
CAGCAATGATTGTAATGTCG+TGG | + | chr8_3:57773588-57773607 | None:intergenic | 40.0% | |
CGACATTACAATCATTGCTG+AGG | - | chr8_3:57773588-57773607 | Msa1297460:CDS | 40.0% | |
ACAACAAAACGCACGGATAC+AGG | + | chr8_3:57772111-57772130 | None:intergenic | 45.0% | |
AATCATCGTGCAGGAAAAGG+TGG | - | chr8_3:57772280-57772299 | Msa1297460:intron | 45.0% | |
AGAGTTTCTCTCACGTGACA+TGG | - | chr8_3:57772364-57772383 | Msa1297460:intron | 45.0% | |
GAATGTTTCGCTTAGAGTGG+TGG | + | chr8_3:57772441-57772460 | None:intergenic | 45.0% | |
CTGAAAAGAGGATGGAGATG+CGG | + | chr8_3:57772576-57772595 | None:intergenic | 45.0% | |
!! | GGGTTTGGGTTGTCAAAAGA+CGG | + | chr8_3:57772611-57772630 | None:intergenic | 45.0% |
TTGGGCAATGACACTGAAGT+GGG | + | chr8_3:57772671-57772690 | None:intergenic | 45.0% | |
ATTGGGCAATGACACTGAAG+TGG | + | chr8_3:57772672-57772691 | None:intergenic | 45.0% | |
GAGTTCTGCAAGAGCAATGA+AGG | + | chr8_3:57772846-57772865 | None:intergenic | 45.0% | |
ATATATTCGACCGAGACACC+TGG | + | chr8_3:57773147-57773166 | None:intergenic | 45.0% | |
!! | TTGGTGATGCTACTGCTATC+AGG | - | chr8_3:57773416-57773435 | Msa1297460:intron | 45.0% |
! | TGGTGATGCTACTGCTATCA+GGG | - | chr8_3:57773417-57773436 | Msa1297460:intron | 45.0% |
!! | AGGGTAGAAGCAAAAGTGTC+AGG | - | chr8_3:57773436-57773455 | Msa1297460:intron | 45.0% |
!! | GGGTAGAAGCAAAAGTGTCA+GGG | - | chr8_3:57773437-57773456 | Msa1297460:intron | 45.0% |
! | ATCCACTGCCAAAAGCATGA+TGG | - | chr8_3:57773478-57773497 | Msa1297460:intron | 45.0% |
GTCGTGGAAAGAATCTCCAA+AGG | + | chr8_3:57773572-57773591 | None:intergenic | 45.0% | |
ACAACAAAACGCACGGATAC+AGG | + | chr8_3:57772111-57772130 | None:intergenic | 45.0% | |
AATCATCGTGCAGGAAAAGG+TGG | - | chr8_3:57772280-57772299 | Msa1297460:intron | 45.0% | |
AGAGTTTCTCTCACGTGACA+TGG | - | chr8_3:57772364-57772383 | Msa1297460:intron | 45.0% | |
GAATGTTTCGCTTAGAGTGG+TGG | + | chr8_3:57772441-57772460 | None:intergenic | 45.0% | |
CTGAAAAGAGGATGGAGATG+CGG | + | chr8_3:57772576-57772595 | None:intergenic | 45.0% | |
!! | GGGTTTGGGTTGTCAAAAGA+CGG | + | chr8_3:57772611-57772630 | None:intergenic | 45.0% |
TTGGGCAATGACACTGAAGT+GGG | + | chr8_3:57772671-57772690 | None:intergenic | 45.0% | |
ATTGGGCAATGACACTGAAG+TGG | + | chr8_3:57772672-57772691 | None:intergenic | 45.0% | |
GAGTTCTGCAAGAGCAATGA+AGG | + | chr8_3:57772846-57772865 | None:intergenic | 45.0% | |
ATATATTCGACCGAGACACC+TGG | + | chr8_3:57773147-57773166 | None:intergenic | 45.0% | |
!! | TTGGTGATGCTACTGCTATC+AGG | - | chr8_3:57773416-57773435 | Msa1297460:intron | 45.0% |
! | TGGTGATGCTACTGCTATCA+GGG | - | chr8_3:57773417-57773436 | Msa1297460:intron | 45.0% |
!! | AGGGTAGAAGCAAAAGTGTC+AGG | - | chr8_3:57773436-57773455 | Msa1297460:intron | 45.0% |
!! | GGGTAGAAGCAAAAGTGTCA+GGG | - | chr8_3:57773437-57773456 | Msa1297460:intron | 45.0% |
! | ATCCACTGCCAAAAGCATGA+TGG | - | chr8_3:57773478-57773497 | Msa1297460:intron | 45.0% |
GTCGTGGAAAGAATCTCCAA+AGG | + | chr8_3:57773572-57773591 | None:intergenic | 45.0% | |
ACAAAACGCACGGATACAGG+AGG | + | chr8_3:57772108-57772127 | None:intergenic | 50.0% | |
! | GAACTTGCTTGATGCTGACG+TGG | - | chr8_3:57772337-57772356 | Msa1297460:intron | 50.0% |
CGAAGACATACCAGGTGTCT+CGG | - | chr8_3:57773134-57773153 | Msa1297460:CDS | 50.0% | |
! | GTCCATCATGCTTTTGGCAG+TGG | + | chr8_3:57773483-57773502 | None:intergenic | 50.0% |
ACAAAACGCACGGATACAGG+AGG | + | chr8_3:57772108-57772127 | None:intergenic | 50.0% | |
! | GAACTTGCTTGATGCTGACG+TGG | - | chr8_3:57772337-57772356 | Msa1297460:intron | 50.0% |
CGAAGACATACCAGGTGTCT+CGG | - | chr8_3:57773134-57773153 | Msa1297460:CDS | 50.0% | |
! | GTCCATCATGCTTTTGGCAG+TGG | + | chr8_3:57773483-57773502 | None:intergenic | 50.0% |
! | GGCTAGTGCCATTGCCTTTG+AGG | - | chr8_3:57772385-57772404 | Msa1297460:intron | 55.0% |
! | GGCTAGTGCCATTGCCTTTG+AGG | - | chr8_3:57772385-57772404 | Msa1297460:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 57771900 | 57773630 | 57771900 | ID=Msa1297460;Name=Msa1297460 |
chr8_3 | mRNA | 57771900 | 57773630 | 57771900 | ID=Msa1297460-mRNA-1;Parent=Msa1297460;Name=Msa1297460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|3|0|341 |
chr8_3 | exon | 57773568 | 57773630 | 57773568 | ID=Msa1297460-mRNA-1:exon:16549;Parent=Msa1297460-mRNA-1 |
chr8_3 | exon | 57772647 | 57773237 | 57772647 | ID=Msa1297460-mRNA-1:exon:16548;Parent=Msa1297460-mRNA-1 |
chr8_3 | exon | 57771900 | 57772271 | 57771900 | ID=Msa1297460-mRNA-1:exon:16547;Parent=Msa1297460-mRNA-1 |
chr8_3 | CDS | 57773568 | 57773630 | 57773568 | ID=Msa1297460-mRNA-1:cds;Parent=Msa1297460-mRNA-1 |
chr8_3 | CDS | 57772647 | 57773237 | 57772647 | ID=Msa1297460-mRNA-1:cds;Parent=Msa1297460-mRNA-1 |
chr8_3 | CDS | 57771900 | 57772271 | 57771900 | ID=Msa1297460-mRNA-1:cds;Parent=Msa1297460-mRNA-1 |
Gene Sequence |
Protein sequence |