AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206010 MtrunA17_Chr4g0054131 98.382 309 4 1 1 308 1 309 0.0 608
Msa1206010 MtrunA17_Chr5g0401061 65.806 310 88 6 1 308 1 294 3.66e-106 311
Msa1206010 MtrunA17_Chr2g0293381 45.276 254 120 6 1 250 1 239 4.04e-66 209
Msa1206010 MtrunA17_Chr8g0384671 44.531 256 117 6 1 250 1 237 8.24e-64 203
Msa1206010 MtrunA17_Chr1g0166681 69.048 84 25 1 1 84 1 83 7.92e-33 120
Msa1206010 MtrunA17_Chr8g0342871 36.071 280 153 8 1 280 1 254 8.34e-33 122
Msa1206010 MtrunA17_Chr2g0329921 37.500 216 114 5 1 201 1 210 2.38e-32 121
Msa1206010 MtrunA17_Chr8g0383821 48.305 118 57 3 1 114 1 118 3.00e-29 108
Msa1206010 MtrunA17_Chr1g0195261 70.000 50 15 0 1 50 1 50 6.12e-17 73.6
Msa1206010 MtrunA17_Chr1g0195251 37.097 124 68 5 136 256 296 412 2.36e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206010 AT5G67580.2 50.000 310 142 4 1 308 1 299 8.60e-72 224
Msa1206010 AT5G67580.1 50.000 310 142 4 1 308 1 299 8.60e-72 224
Msa1206010 AT3G49850.1 47.386 306 143 6 1 304 1 290 4.37e-65 207
Msa1206010 AT3G49850.2 47.386 306 143 6 1 304 1 290 4.37e-65 207
Msa1206010 AT1G49950.3 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1206010 AT1G49950.1 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1206010 AT1G49950.2 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1206010 AT1G72740.2 31.959 291 145 7 1 280 1 249 2.42e-30 116
Msa1206010 AT1G72740.1 31.773 299 141 9 1 280 1 255 3.89e-28 110
Msa1206010 AT1G17520.4 31.802 283 165 6 1 280 1 258 5.02e-28 110
Msa1206010 AT1G17520.1 32.155 283 170 7 1 280 1 264 3.24e-27 108
Msa1206010 AT1G17520.3 32.042 284 164 7 1 280 1 259 1.10e-26 106
Msa1206010 AT1G17520.2 32.394 284 169 8 1 280 1 265 8.11e-26 104

Find 107 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCCCCTGACAATTTC+TGG 0.156688 8_1:+62744887 Msa1206010:CDS
AATGCAAAATGCTTCATATT+TGG 0.195627 8_1:+62747186 Msa1206010:CDS
TTGATAGCTCTGCCTCAATT+TGG 0.196523 8_1:-62746995 None:intergenic
CAATTGGTTATTGTCAGTTT+TGG 0.201241 8_1:-62744825 None:intergenic
AGAATTTAATCTTTGCTTCT+AGG 0.203601 8_1:-62744421 None:intergenic
ATTCGAACGCGTACGCAAAA+TGG 0.224697 8_1:-62744586 None:intergenic
GACAATAACTTTCTAAGATT+TGG 0.247003 8_1:-62746041 None:intergenic
TAACTTTCGGCTTGTAAATC+TGG 0.250955 8_1:+62747548 Msa1206010:three_prime_UTR
CTCCACCTCCGGAGAATCTT+TGG 0.268223 8_1:-62746940 None:intergenic
GCCAAGCTGGCTTGAGATAA+TGG 0.285939 8_1:+62747482 Msa1206010:three_prime_UTR
TGTATTGTGAACAGGATAAA+TGG 0.295045 8_1:+62744729 Msa1206010:intron
TGATAGCTCTGCCTCAATTT+GGG 0.303115 8_1:-62746994 None:intergenic
ATGTTCCACTACAAATAGTT+AGG 0.338025 8_1:-62744934 None:intergenic
TTGTAGATGTACATAACTTT+CGG 0.349440 8_1:+62747535 Msa1206010:three_prime_UTR
TCAAACACGGGGCTGGAAAA+TGG 0.376865 8_1:+62744532 Msa1206010:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 8_1:-62744480 None:intergenic
CTACTTTACTCAAGGCCAAT+TGG 0.386042 8_1:-62744841 None:intergenic
ATATAAATGTCACAGCAATA+TGG 0.388272 8_1:+62744756 Msa1206010:CDS
CGCCTCCCTAGCTGCTGCTT+CGG 0.390489 8_1:-62747099 None:intergenic
ACAAAATGAAGATACACAAT+TGG 0.394358 8_1:+62742315 Msa1206010:five_prime_UTR
TTGGGTGTGTACCTAATCAC+TGG 0.410969 8_1:-62742436 None:intergenic
CTCATCATCGCCCAGTGATT+AGG 0.412971 8_1:+62742425 Msa1206010:five_prime_UTR
CTACAAATAGTTAGGGGCTT+AGG 0.415247 8_1:-62744926 None:intergenic
CAATTTGGATACATTACATT+CGG 0.418387 8_1:+62742247 None:intergenic
ATGTTCCACCAGAAATTGTC+AGG 0.418565 8_1:-62744895 None:intergenic
TTCTCAGAGACCGCTGAACT+TGG 0.424839 8_1:-62746879 None:intergenic
GAAGAAGCGGCGTTGAAAGC+TGG 0.427269 8_1:+62744504 Msa1206010:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.427716 8_1:+62744472 Msa1206010:CDS
TGCTGCTTCGGCCTGTGCAA+TGG 0.434469 8_1:-62747087 None:intergenic
TATAAATGTCACAGCAATAT+GGG 0.435123 8_1:+62744757 Msa1206010:CDS
ATGTCTTCCTTGGTACTTTG+TGG 0.440390 8_1:-62747673 None:intergenic
CTTCTAGGTCGAGGAAAGCT+TGG 0.440974 8_1:-62744406 None:intergenic
GGGAGACAATAATGTATTAG+AGG 0.441902 8_1:+62745636 Msa1206010:CDS
AATAACTTTCTAAGATTTGG+TGG 0.446528 8_1:-62746038 None:intergenic
TTGTTGATCATTGGCCAAGC+TGG 0.446644 8_1:+62747469 Msa1206010:three_prime_UTR
GTTCCATTGCATGTCTTCCT+TGG 0.447588 8_1:-62747683 None:intergenic
CCTTCAATTGCAATTTCGAT+TGG 0.454843 8_1:+62747748 Msa1206010:three_prime_UTR
GCAGCCTTGTCAGAACCCTT+TGG 0.463786 8_1:-62745679 None:intergenic
CCAATCGAAATTGCAATTGA+AGG 0.468814 8_1:-62747748 None:intergenic
AGCTGCAAAAGCAGTTGCAG+AGG 0.469233 8_1:+62747055 Msa1206010:CDS
CGAAGCAGCAGCTAGGGAGG+CGG 0.477225 8_1:+62747100 Msa1206010:CDS
CAAAACTGACAATAACCAAT+TGG 0.479938 8_1:+62744826 Msa1206010:CDS
GGAGTAGTCAAACACGGGGC+TGG 0.481269 8_1:+62744525 Msa1206010:CDS
CTTTGCAAAAGCAGCGATGA+AGG 0.481859 8_1:+62747157 Msa1206010:CDS
GTCCAAAGATTCTCCGGAGG+TGG 0.481885 8_1:+62746938 Msa1206010:CDS
ACAGGCCGAAGCAGCAGCTA+GGG 0.483254 8_1:+62747094 Msa1206010:CDS
ACCATTATCTCAAGCCAGCT+TGG 0.485905 8_1:-62747483 None:intergenic
TAATCTTTGCTTCTAGGTCG+AGG 0.487452 8_1:-62744415 None:intergenic
GGCCGAAGCAGCAGCTAGGG+AGG 0.499766 8_1:+62747097 Msa1206010:CDS
TGTTCCACTACAAATAGTTA+GGG 0.500173 8_1:-62744933 None:intergenic
AGCGAGGTCCAAAGATTCTC+CGG 0.502665 8_1:+62746932 Msa1206010:CDS
AGCTGTCGGATTTCCTTCCA+TGG 0.503125 8_1:+62744452 Msa1206010:exon
ATCCAAATGAATTTGCAAAA+CGG 0.504475 8_1:-62742368 None:intergenic
TCACACATCTTCTCCACCTC+CGG 0.506821 8_1:-62746951 None:intergenic
CACAGGCCGAAGCAGCAGCT+AGG 0.511915 8_1:+62747093 Msa1206010:CDS
CAAAATGAAGATACACAATT+GGG 0.514762 8_1:+62742316 Msa1206010:five_prime_UTR
TGCCATTGCTTCTTACATAG+AGG 0.516855 8_1:+62745699 Msa1206010:CDS
GTCAATATGAAGGAGCCAAA+GGG 0.526790 8_1:+62745664 Msa1206010:CDS
GTTCAAAAGAACAAGTATCA+AGG 0.540828 8_1:+62744969 Msa1206010:CDS
CCTTTCAAAATCCCAAATTG+AGG 0.542802 8_1:+62746983 Msa1206010:CDS
TACCTCTATGTAAGAAGCAA+TGG 0.545469 8_1:-62745701 None:intergenic
TCACAGCAATATGGGGATCC+CGG 0.546612 8_1:+62744765 Msa1206010:CDS
GGCAGAAGTTGCCATTGCAC+AGG 0.551573 8_1:+62747076 Msa1206010:CDS
CGCAAAATGGAACTGAACTC+AGG 0.555443 8_1:-62744573 None:intergenic
AAGCTCTTCTCTGATGCTTG+TGG 0.556765 8_1:+62746908 Msa1206010:CDS
TTTCTGCTTAGGAGCACCCA+TGG 0.559262 8_1:-62744469 None:intergenic
AGAGGCTATTGTCAATATGA+AGG 0.562785 8_1:+62745654 Msa1206010:CDS
TGCTTAGGAGCACCCATGGA+AGG 0.563582 8_1:-62744465 None:intergenic
CTCTGATGCTTGTGGAAGCG+AGG 0.566860 8_1:+62746916 Msa1206010:CDS
TGTCAATATGAAGGAGCCAA+AGG 0.567981 8_1:+62745663 Msa1206010:CDS
GTCAGCAAAATTGCAGCAGA+TGG 0.568574 8_1:+62746061 Msa1206010:CDS
GCAATTTCGATTGGCACATG+CGG 0.568907 8_1:+62747757 Msa1206010:three_prime_UTR
GACAAGTGGCAAAATAGTCC+AGG 0.570447 8_1:+62746085 Msa1206010:CDS
AAAATGGCGCACAATACTCA+TGG 0.571706 8_1:+62744548 Msa1206010:CDS
TCAGCGGTCTCTGAGAAAAG+AGG 0.571845 8_1:+62746885 Msa1206010:CDS
ACGTTGAACTACTTTACTCA+AGG 0.573317 8_1:-62744849 None:intergenic
GGCAGAGCTATCAAAAGTGA+GGG 0.588740 8_1:+62747004 Msa1206010:CDS
GCTGTCGGATTTCCTTCCAT+GGG 0.598928 8_1:+62744453 Msa1206010:exon
CAAAATTATGCCAAGTTCAG+CGG 0.601681 8_1:+62746869 Msa1206010:CDS
AAGCCCCTAACTATTTGTAG+TGG 0.611891 8_1:+62744929 Msa1206010:CDS
TGTGAATTGTGCAGATGTCG+TGG 0.612030 8_1:+62747438 Msa1206010:intron
GCGTTCGAATGTAGATCTCA+AGG 0.619214 8_1:+62744599 Msa1206010:CDS
TGGGTGTGTACCTAATCACT+GGG 0.626177 8_1:-62742435 None:intergenic
TCGAACAAGCAATGTAAACA+TGG 0.626480 8_1:-62747780 None:intergenic
AAGCTGGAGTAGTCAAACAC+GGG 0.628346 8_1:+62744520 Msa1206010:CDS
AGGCAGAGCTATCAAAAGTG+AGG 0.628730 8_1:+62747003 Msa1206010:CDS
GATTGCAGAAGCTGAAGCTG+AGG 0.636628 8_1:+62747124 Msa1206010:CDS
GGGGATGTCAGCTCAAGAGG+CGG 0.637055 8_1:+62747025 Msa1206010:CDS
AAGCCCCTGACAATTTCTGG+TGG 0.637720 8_1:+62744890 Msa1206010:CDS
GGAGCCAAAGGGTTCTGACA+AGG 0.637821 8_1:+62745675 Msa1206010:CDS
GTACCAAGGAAGACATGCAA+TGG 0.638053 8_1:+62747680 Msa1206010:three_prime_UTR
TACATTCGGAATAAATGACA+AGG 0.642668 8_1:+62742261 Msa1206010:five_prime_UTR
GCTTGTAAATCTGGAATATG+CGG 0.648307 8_1:+62747557 Msa1206010:three_prime_UTR
TTGCAGCAGATGGTGACAAG+TGG 0.648634 8_1:+62746071 Msa1206010:CDS
ATAAATGTCACAGCAATATG+GGG 0.648999 8_1:+62744758 Msa1206010:CDS
TGTTCCACCAGAAATTGTCA+GGG 0.649357 8_1:-62744894 None:intergenic
ATGGACTGCAGAAGAAGAAG+CGG 0.652524 8_1:+62744491 Msa1206010:CDS
ATTGTGAACAGGATAAATGG+AGG 0.664041 8_1:+62744732 Msa1206010:intron
CAGAGCTATCAAAAGTGAGG+GGG 0.676061 8_1:+62747006 Msa1206010:CDS
AAAGCTGGAGTAGTCAAACA+CGG 0.681254 8_1:+62744519 Msa1206010:CDS
GTTCCACTACAAATAGTTAG+GGG 0.682877 8_1:-62744932 None:intergenic
GCAGAGCTATCAAAAGTGAG+GGG 0.684532 8_1:+62747005 Msa1206010:CDS
GTTCCACCAGAAATTGTCAG+GGG 0.692592 8_1:-62744893 None:intergenic
GGGAACGCCACAAAGTACCA+AGG 0.723403 8_1:+62747666 Msa1206010:three_prime_UTR
GAGGTCCAAAGATTCTCCGG+AGG 0.723417 8_1:+62746935 Msa1206010:CDS
AGCTGGAGTAGTCAAACACG+GGG 0.727088 8_1:+62744521 Msa1206010:CDS
ACATTCGGAATAAATGACAA+GGG 0.735959 8_1:+62742262 Msa1206010:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACTTAATTATATTTTGT+TGG + chr8_1:62744287-62744306 Msa1206010:intron 10.0%
!! TCAAAAAATTATAGAAGAAT+CGG - chr8_1:62742462-62742481 None:intergenic 15.0%
!!! AATGTTGTTTTTTTCTTAAT+GGG + chr8_1:62742622-62742641 Msa1206010:intron 15.0%
!! GATAAAAATTGCATTTAAAA+AGG - chr8_1:62742671-62742690 None:intergenic 15.0%
!! ATATTACAATGTTATAACTT+AGG + chr8_1:62742858-62742877 Msa1206010:intron 15.0%
!!! CACTTTTATTAAGAAAAAAT+AGG - chr8_1:62743447-62743466 None:intergenic 15.0%
!!! TTCATTTTAATGTTTATTGA+TGG + chr8_1:62744355-62744374 Msa1206010:intron 15.0%
!! TTTATTAATTGTTACCTATA+AGG + chr8_1:62745363-62745382 Msa1206010:intron 15.0%
!! AAAAAGTAAAATAAAAGCTA+TGG - chr8_1:62747615-62747634 None:intergenic 15.0%
!! AAAATTGAAACTTTCTTTGA+GGG - chr8_1:62742497-62742516 None:intergenic 20.0%
!! AAAAATTGAAACTTTCTTTG+AGG - chr8_1:62742498-62742517 None:intergenic 20.0%
!! CTTCTAACAAAACAAAAAAA+TGG - chr8_1:62742522-62742541 None:intergenic 20.0%
!!! CAATGTTGTTTTTTTCTTAA+TGG + chr8_1:62742621-62742640 Msa1206010:intron 20.0%
!! ATAGGACTATTTGTATAAAT+AGG + chr8_1:62743310-62743329 Msa1206010:intron 20.0%
!! AAGAAAAAATAGGAAAGAAT+AGG - chr8_1:62743437-62743456 None:intergenic 20.0%
!!! TAATAAAAGTGTTCTTTCTT+TGG + chr8_1:62743456-62743475 Msa1206010:intron 20.0%
!!! TCTATTTCTCAAATTATTAC+CGG - chr8_1:62743567-62743586 None:intergenic 20.0%
!! TCTATTCATTTGTGAAAATT+TGG - chr8_1:62745177-62745196 None:intergenic 20.0%
!! AAAAAATTCAGATTCAAACT+AGG - chr8_1:62745207-62745226 None:intergenic 20.0%
!! TAAGCATGTTGAAAATATAA+GGG + chr8_1:62745331-62745350 Msa1206010:intron 20.0%
!!! GTTTTTCTTATAGTTTTTCT+AGG - chr8_1:62746368-62746387 None:intergenic 20.0%
!! AATAAATTATTTGATCTTGC+TGG + chr8_1:62746622-62746641 Msa1206010:intron 20.0%
!! GTTGACAATGATAAATAAAT+TGG + chr8_1:62746664-62746683 Msa1206010:intron 20.0%
!! CAATTCAAATAAAACTATCA+CGG - chr8_1:62746761-62746780 None:intergenic 20.0%
!! ATCAAAATCTAATCAAGTAA+CGG - chr8_1:62747275-62747294 None:intergenic 20.0%
!!! ATTTTTAAAAGAAGACAATG+AGG + chr8_1:62747645-62747664 Msa1206010:three_prime_UTR 20.0%
!!! TTTTTAAAAGAAGACAATGA+GGG + chr8_1:62747646-62747665 Msa1206010:three_prime_UTR 20.0%
! ACAAAATGAAGATACACAAT+TGG + chr8_1:62742315-62742334 Msa1206010:five_prime_UTR 25.0%
! CAAAATGAAGATACACAATT+GGG + chr8_1:62742316-62742335 Msa1206010:five_prime_UTR 25.0%
! ATCCAAATGAATTTGCAAAA+CGG - chr8_1:62742371-62742390 None:intergenic 25.0%
! AAATTATAGAAGAATCGGTT+GGG - chr8_1:62742457-62742476 None:intergenic 25.0%
! AAAATTATAGAAGAATCGGT+TGG - chr8_1:62742458-62742477 None:intergenic 25.0%
! GCATCAAAATGCAAAATTTA+GGG - chr8_1:62742732-62742751 None:intergenic 25.0%
! TGCATCAAAATGCAAAATTT+AGG - chr8_1:62742733-62742752 None:intergenic 25.0%
! ATAACTTAGGTTAGAATATG+TGG + chr8_1:62742871-62742890 Msa1206010:intron 25.0%
!!! TATAGTCTTATAGAAGTTAG+TGG + chr8_1:62743062-62743081 Msa1206010:intron 25.0%
!!! ATAGTCTTATAGAAGTTAGT+GGG + chr8_1:62743063-62743082 Msa1206010:intron 25.0%
!!! GTAACTTAAGTGTATTTTAG+AGG + chr8_1:62743120-62743139 Msa1206010:intron 25.0%
!! TTTTGATGAGAGAGAATTAT+TGG + chr8_1:62743178-62743197 Msa1206010:intron 25.0%
! ATATATTACATGGTTACATC+AGG - chr8_1:62743939-62743958 None:intergenic 25.0%
! ACACAAAGGAATATATTACA+TGG - chr8_1:62743929-62743948 None:intergenic 25.0%
!! GTTATGAAAAGAATTTTCGT+CGG - chr8_1:62743876-62743895 None:intergenic 25.0%
!! GTTATGAAAAGAATTTTCGT+CGG + chr8_1:62743876-62743895 Msa1206010:intron 25.0%
! ACACAAAGGAATATATTACA+TGG + chr8_1:62743929-62743948 Msa1206010:intron 25.0%
! ATATATTACATGGTTACATC+AGG + chr8_1:62743939-62743958 Msa1206010:intron 25.0%
! CAACCTGATGTAAAAAAAAA+GGG - chr8_1:62744125-62744144 None:intergenic 25.0%
! GTGCTATATTGTTTAACATT+GGG + chr8_1:62744198-62744217 Msa1206010:intron 25.0%
! TATATTGTTTAACATTGGGT+TGG + chr8_1:62744202-62744221 Msa1206010:intron 25.0%
! ATATTGTTTAACATTGGGTT+GGG + chr8_1:62744203-62744222 Msa1206010:intron 25.0%
!! TATTGATGGTCATATAGAAA+AGG + chr8_1:62744369-62744388 Msa1206010:intron 25.0%
! AGAATTTAATCTTTGCTTCT+AGG - chr8_1:62744424-62744443 None:intergenic 25.0%
!! TATCTTTATGTATTTCTGCT+AGG - chr8_1:62744643-62744662 None:intergenic 25.0%
! ATATAAATGTCACAGCAATA+TGG + chr8_1:62744756-62744775 Msa1206010:CDS 25.0%
! TATAAATGTCACAGCAATAT+GGG + chr8_1:62744757-62744776 Msa1206010:CDS 25.0%
!! AATTGGTTATTGTCAGTTTT+GGG - chr8_1:62744827-62744846 None:intergenic 25.0%
! GTAAGCATGTTGAAAATATA+AGG + chr8_1:62745330-62745349 Msa1206010:intron 25.0%
! AAGCATGTTGAAAATATAAG+GGG + chr8_1:62745332-62745351 Msa1206010:intron 25.0%
! TGAAAATATAAGGGGAAAAA+AGG + chr8_1:62745340-62745359 Msa1206010:intron 25.0%
!!! TGATTGCATTATGCTTTTTT+GGG - chr8_1:62745825-62745844 None:intergenic 25.0%
! TTAAAAGTTACCTGTGATTT+AGG + chr8_1:62745885-62745904 Msa1206010:intron 25.0%
! AATTACTTTCAATGCAATGA+CGG - chr8_1:62745976-62745995 None:intergenic 25.0%
!! ACTTTTCATTTCATCTCTAT+AGG + chr8_1:62746001-62746020 Msa1206010:intron 25.0%
!!! AATAACTTTCTAAGATTTGG+TGG - chr8_1:62746041-62746060 None:intergenic 25.0%
!!! GACAATAACTTTCTAAGATT+TGG - chr8_1:62746044-62746063 None:intergenic 25.0%
! CAACTGAATATAAAATTACC+TGG - chr8_1:62746106-62746125 None:intergenic 25.0%
!! CAGGTAATTTTATATTCAGT+TGG + chr8_1:62746104-62746123 Msa1206010:intron 25.0%
! TAAAAAAGATGGTAGAAACT+TGG + chr8_1:62746246-62746265 Msa1206010:intron 25.0%
!! ATGAAACACTTTAGTCTTTA+AGG - chr8_1:62746584-62746603 None:intergenic 25.0%
!!! CCGAATTTTGTTTATTAGTT+GGG - chr8_1:62746793-62746812 None:intergenic 25.0%
! CCCAACTAATAAACAAAATT+CGG + chr8_1:62746790-62746809 Msa1206010:intron 25.0%
!!! ACCGAATTTTGTTTATTAGT+TGG - chr8_1:62746794-62746813 None:intergenic 25.0%
! AATGCAAAATGCTTCATATT+TGG + chr8_1:62747186-62747205 Msa1206010:CDS 25.0%
! TCAAAATCTAATCAAGTAAC+GGG - chr8_1:62747274-62747293 None:intergenic 25.0%
!!! TTGATTAGATTTTGATCTGT+AGG + chr8_1:62747279-62747298 Msa1206010:intron 25.0%
! TGTACATCTACAAAAAGAAT+TGG - chr8_1:62747528-62747547 None:intergenic 25.0%
! TTGTAGATGTACATAACTTT+CGG + chr8_1:62747535-62747554 Msa1206010:three_prime_UTR 25.0%
!! GATTCATGAAACATTTTATC+AGG + chr8_1:62747583-62747602 Msa1206010:three_prime_UTR 25.0%
TACATTCGGAATAAATGACA+AGG + chr8_1:62742261-62742280 Msa1206010:five_prime_UTR 30.0%
ACATTCGGAATAAATGACAA+GGG + chr8_1:62742262-62742281 Msa1206010:five_prime_UTR 30.0%
! GAAAATTTTCAGAGGAAAAG+TGG + chr8_1:62742287-62742306 Msa1206010:five_prime_UTR 30.0%
! GCATTATTGTAAGTTTTTCC+AGG + chr8_1:62742755-62742774 Msa1206010:intron 30.0%
!!! TTCTACCTTTGTTTTCACAA+AGG + chr8_1:62742790-62742809 Msa1206010:intron 30.0%
!!! TCTACCTTTGTTTTCACAAA+GGG + chr8_1:62742791-62742810 Msa1206010:intron 30.0%
AATTTAAATAACCACCGAGT+TGG - chr8_1:62743020-62743039 None:intergenic 30.0%
! AACTCGGTGGTTATTTAAAT+TGG + chr8_1:62743019-62743038 Msa1206010:intron 30.0%
! ATGAGAGAGAATTATTGGTT+AGG + chr8_1:62743183-62743202 Msa1206010:intron 30.0%
TTATAGGGTTGTTAGTTAGT+TGG + chr8_1:62743272-62743291 Msa1206010:intron 30.0%
ATAAATAGGAGAACACAATG+CGG + chr8_1:62743324-62743343 Msa1206010:intron 30.0%
AGTAGTAACTCTATTGTGAA+GGG + chr8_1:62743385-62743404 Msa1206010:intron 30.0%
TTGAAAGTAACAACATGTGT+AGG + chr8_1:62743592-62743611 Msa1206010:intron 30.0%
ATTGAGATAATCTTCAGTCA+AGG + chr8_1:62743737-62743756 Msa1206010:intron 30.0%
TTGAGATAATCTTCAGTCAA+GGG + chr8_1:62743738-62743757 Msa1206010:intron 30.0%
GAAAACAATGTAATGCACAT+TGG - chr8_1:62743819-62743838 None:intergenic 30.0%
GAAAACAATGTAATGCACAT+TGG + chr8_1:62743819-62743838 Msa1206010:intron 30.0%
TTGAGATAATCTTCAGTCAA+GGG - chr8_1:62743738-62743757 None:intergenic 30.0%
ATTGAGATAATCTTCAGTCA+AGG - chr8_1:62743737-62743756 None:intergenic 30.0%
!!! TTGCCCTTTTTTTTTACATC+AGG + chr8_1:62744119-62744138 Msa1206010:intron 30.0%
GCAACCTGATGTAAAAAAAA+AGG - chr8_1:62744126-62744145 None:intergenic 30.0%
! ATAGAAGTAATCTGAAGTGT+TGG + chr8_1:62744176-62744195 Msa1206010:intron 30.0%
! GGTGCTATATTGTTTAACAT+TGG + chr8_1:62744197-62744216 Msa1206010:intron 30.0%
! TTGAAGTGAATTTGGAACTA+AGG + chr8_1:62744242-62744261 Msa1206010:intron 30.0%
AATTCTCACAAAAAAGCTGT+CGG + chr8_1:62744438-62744457 Msa1206010:five_prime_UTR 30.0%
TGTATTGTGAACAGGATAAA+TGG + chr8_1:62744729-62744748 Msa1206010:intron 30.0%
ATAAATGTCACAGCAATATG+GGG + chr8_1:62744758-62744777 Msa1206010:CDS 30.0%
! ATTGGTTATTGTCAGTTTTG+GGG - chr8_1:62744826-62744845 None:intergenic 30.0%
! CAATTGGTTATTGTCAGTTT+TGG - chr8_1:62744828-62744847 None:intergenic 30.0%
CAAAACTGACAATAACCAAT+TGG + chr8_1:62744826-62744845 Msa1206010:CDS 30.0%
TGTTCCACTACAAATAGTTA+GGG - chr8_1:62744936-62744955 None:intergenic 30.0%
ATGTTCCACTACAAATAGTT+AGG - chr8_1:62744937-62744956 None:intergenic 30.0%
! GATACTTGTTCTTTTGAACT+AGG - chr8_1:62744968-62744987 None:intergenic 30.0%
GTTCAAAAGAACAAGTATCA+AGG + chr8_1:62744969-62744988 Msa1206010:CDS 30.0%
AGAAATTATCTCCATGATTG+TGG + chr8_1:62745039-62745058 Msa1206010:intron 30.0%
TAGACCTAATTACTCATAAG+GGG - chr8_1:62745126-62745145 None:intergenic 30.0%
CTAGACCTAATTACTCATAA+GGG - chr8_1:62745127-62745146 None:intergenic 30.0%
ACTAGACCTAATTACTCATA+AGG - chr8_1:62745128-62745147 None:intergenic 30.0%
!! ACAAAGGTGCTATAAAATGA+AGG - chr8_1:62745259-62745278 None:intergenic 30.0%
! TGAGGTACTACAAAAAATGA+AGG - chr8_1:62745297-62745316 None:intergenic 30.0%
ATTGTTACCTATAAGGAGTA+AGG + chr8_1:62745370-62745389 Msa1206010:intron 30.0%
TTGTTACCTATAAGGAGTAA+GGG + chr8_1:62745371-62745390 Msa1206010:intron 30.0%
TTTCTTATCACAAGCATACA+AGG - chr8_1:62745540-62745559 None:intergenic 30.0%
GCTTAGGATGTATTAAATTG+CGG - chr8_1:62745566-62745585 None:intergenic 30.0%
! TTATTTTCCCCTCTTTACAA+TGG + chr8_1:62745795-62745814 Msa1206010:intron 30.0%
!!! CTGATTGCATTATGCTTTTT+TGG - chr8_1:62745826-62745845 None:intergenic 30.0%
ATTACTTTCAATGCAATGAC+GGG - chr8_1:62745975-62745994 None:intergenic 30.0%
TTTATATTCAGTTGGATGTG+TGG + chr8_1:62746112-62746131 Msa1206010:intron 30.0%
!!! TCTACCATCTTTTTTACGAT+AGG - chr8_1:62746242-62746261 None:intergenic 30.0%
AGGGATATGATAGAACATTA+CGG + chr8_1:62746422-62746441 Msa1206010:intron 30.0%
GTAAACCTTTGTAATAGACA+TGG + chr8_1:62746532-62746551 Msa1206010:intron 30.0%
ATTGACCATGTCTATTACAA+AGG - chr8_1:62746540-62746559 None:intergenic 30.0%
TGGAAGTAATGAACAGAAAA+TGG + chr8_1:62746642-62746661 Msa1206010:intron 30.0%
GGTATGTGATAAGTTTATCA+TGG + chr8_1:62746811-62746830 Msa1206010:intron 30.0%
TAAGCATGTCAAGATTCTAA+TGG - chr8_1:62747233-62747252 None:intergenic 30.0%
CAAAATCTAATCAAGTAACG+GGG - chr8_1:62747273-62747292 None:intergenic 30.0%
! CAAGGGTAGAAAATTTTCAG+AGG + chr8_1:62742279-62742298 Msa1206010:five_prime_UTR 35.0%
!!! TGCCGTTTTGCAAATTCATT+TGG + chr8_1:62742366-62742385 Msa1206010:five_prime_UTR 35.0%
! TTCTTTGAGGGAAAACGAAA+GGG - chr8_1:62742485-62742504 None:intergenic 35.0%
! TTTCTTTGAGGGAAAACGAA+AGG - chr8_1:62742486-62742505 None:intergenic 35.0%
! TTCTTAATGGGTGAGCTTAA+AGG + chr8_1:62742634-62742653 Msa1206010:intron 35.0%
! TCTTAATGGGTGAGCTTAAA+GGG + chr8_1:62742635-62742654 Msa1206010:intron 35.0%
ATATGTGGAGTTGTTCTGTT+AGG + chr8_1:62742886-62742905 Msa1206010:intron 35.0%
! TCTTATAGAAGTTAGTGGGT+GGG + chr8_1:62743067-62743086 Msa1206010:intron 35.0%
! GTTAGTTAGTTGGTTAGTTG+AGG + chr8_1:62743282-62743301 Msa1206010:intron 35.0%
! TGGTTAGTTGAGGTTGTTAT+AGG + chr8_1:62743292-62743311 Msa1206010:intron 35.0%
GAGTAGTAACTCTATTGTGA+AGG + chr8_1:62743384-62743403 Msa1206010:intron 35.0%
GTAGTAACTCTATTGTGAAG+GGG + chr8_1:62743386-62743405 Msa1206010:intron 35.0%
ACAACCTCTTGTGTAAAAAC+AGG + chr8_1:62744019-62744038 Msa1206010:intron 35.0%
CAACCTCTTGTGTAAAAACA+GGG + chr8_1:62744020-62744039 Msa1206010:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr8_1:62744026-62744045 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr8_1:62744025-62744044 Msa1206010:intron 35.0%
TGTAAAAAAAAAGGGCAACC+CGG - chr8_1:62744117-62744136 None:intergenic 35.0%
!!! TTTTTTACATCAGGTTGCAC+TGG + chr8_1:62744128-62744147 Msa1206010:intron 35.0%
GGATGTGATTGAAGTGAATT+TGG + chr8_1:62744234-62744253 Msa1206010:intron 35.0%
GTATGCTTTGTATTGTGAAC+AGG + chr8_1:62744721-62744740 Msa1206010:intron 35.0%
ATTGTGAACAGGATAAATGG+AGG + chr8_1:62744732-62744751 Msa1206010:intron 35.0%
!! TTGGTTATTGTCAGTTTTGG+GGG - chr8_1:62744825-62744844 None:intergenic 35.0%
ACGTTGAACTACTTTACTCA+AGG - chr8_1:62744852-62744871 None:intergenic 35.0%
GTTCCACTACAAATAGTTAG+GGG - chr8_1:62744935-62744954 None:intergenic 35.0%
TACACCCCTTATGAGTAATT+AGG + chr8_1:62745119-62745138 Msa1206010:intron 35.0%
! CATTTTATAGCACCTTTGTG+AGG + chr8_1:62745260-62745279 Msa1206010:intron 35.0%
CTTACAGAAAAACTGCTATG+AGG - chr8_1:62745315-62745334 None:intergenic 35.0%
TCAAGATTAAGATGCAGCTT+AGG - chr8_1:62745582-62745601 None:intergenic 35.0%
GGGAGACAATAATGTATTAG+AGG + chr8_1:62745636-62745655 Msa1206010:CDS 35.0%
AGAGGCTATTGTCAATATGA+AGG + chr8_1:62745654-62745673 Msa1206010:CDS 35.0%
TACCTCTATGTAAGAAGCAA+TGG - chr8_1:62745704-62745723 None:intergenic 35.0%
TGTAAAGAGGGGAAAATAAC+AGG - chr8_1:62745794-62745813 None:intergenic 35.0%
TAAGATATGCAGCAAATGCA+TGG - chr8_1:62745862-62745881 None:intergenic 35.0%
! AAGCATTGTATTGCTAGTAG+TGG - chr8_1:62745940-62745959 None:intergenic 35.0%
TTACTTTCAATGCAATGACG+GGG - chr8_1:62745974-62745993 None:intergenic 35.0%
AGCACCTATCGTAAAAAAGA+TGG + chr8_1:62746235-62746254 Msa1206010:intron 35.0%
AGTACAAGTAGATCAGATGA+AGG + chr8_1:62746313-62746332 Msa1206010:intron 35.0%
GTACAAGTAGATCAGATGAA+GGG + chr8_1:62746314-62746333 Msa1206010:intron 35.0%
AGATCTAGAGATCAATGAGT+TGG + chr8_1:62746397-62746416 Msa1206010:intron 35.0%
! TAGAGATCAATGAGTTGGAT+AGG + chr8_1:62746402-62746421 Msa1206010:intron 35.0%
! AGAGATCAATGAGTTGGATA+GGG + chr8_1:62746403-62746422 Msa1206010:intron 35.0%
!! AAGCTTTATTCCACTAAGTG+GGG - chr8_1:62746471-62746490 None:intergenic 35.0%
!! CAAGCTTTATTCCACTAAGT+GGG - chr8_1:62746472-62746491 None:intergenic 35.0%
!! ACAAGCTTTATTCCACTAAG+TGG - chr8_1:62746473-62746492 None:intergenic 35.0%
AATAGACATGGTCAATGATC+TGG + chr8_1:62746544-62746563 Msa1206010:intron 35.0%
CAAAATTATGCCAAGTTCAG+CGG + chr8_1:62746869-62746888 Msa1206010:CDS 35.0%
!! CCTCAATTTGGGATTTTGAA+AGG - chr8_1:62746986-62747005 None:intergenic 35.0%
CCTTTCAAAATCCCAAATTG+AGG + chr8_1:62746983-62747002 Msa1206010:CDS 35.0%
ATCACTTGCAGAAAAATCAG+TGG - chr8_1:62747308-62747327 None:intergenic 35.0%
!! GATTTTCGCTTGTTGATCAT+TGG + chr8_1:62747460-62747479 Msa1206010:three_prime_UTR 35.0%
CTACAAAAAGAATTGGCAGT+AGG - chr8_1:62747521-62747540 None:intergenic 35.0%
! TAACTTTCGGCTTGTAAATC+TGG + chr8_1:62747548-62747567 Msa1206010:three_prime_UTR 35.0%
! GCTTGTAAATCTGGAATATG+CGG + chr8_1:62747557-62747576 Msa1206010:three_prime_UTR 35.0%
CCAATCGAAATTGCAATTGA+AGG - chr8_1:62747751-62747770 None:intergenic 35.0%
CCTTCAATTGCAATTTCGAT+TGG + chr8_1:62747748-62747767 Msa1206010:three_prime_UTR 35.0%
TCGAACAAGCAATGTAAACA+TGG - chr8_1:62747783-62747802 None:intergenic 35.0%
GTAGAAATTTGAACACAGCC+TGG - chr8_1:62742776-62742795 None:intergenic 40.0%
!!! TGTGTTTGCGAGTTGGTTTT+TGG + chr8_1:62742910-62742929 Msa1206010:intron 40.0%
!!! TTTGCGAGTTGGTTTTTGGA+GGG + chr8_1:62742914-62742933 Msa1206010:intron 40.0%
!! TGGTTTTTGGAGGGTTTTGA+AGG + chr8_1:62742923-62742942 Msa1206010:intron 40.0%
!!! GGTTTTTGGAGGGTTTTGAA+GGG + chr8_1:62742924-62742943 Msa1206010:intron 40.0%
!!! GTTTTTGGAGGGTTTTGAAG+GGG + chr8_1:62742925-62742944 Msa1206010:intron 40.0%
!!! ATAACCACCGAGTTGGTTTT+TGG - chr8_1:62743013-62743032 None:intergenic 40.0%
GTCTTATAGAAGTTAGTGGG+TGG + chr8_1:62743066-62743085 Msa1206010:intron 40.0%
! CTTATAGAAGTTAGTGGGTG+GGG + chr8_1:62743068-62743087 Msa1206010:intron 40.0%
TAGGAGAGAGATAGAGACAA+AGG + chr8_1:62743202-62743221 Msa1206010:intron 40.0%
TAGTCAGCTGGGATTGTTAT+AGG + chr8_1:62743256-62743275 Msa1206010:intron 40.0%
AGTCAGCTGGGATTGTTATA+GGG + chr8_1:62743257-62743276 Msa1206010:intron 40.0%
GAGATAATTCTCTCCTCCAA+GGG - chr8_1:62743415-62743434 None:intergenic 40.0%
! TCGTGTTGGTGCTTCATAAA+TGG - chr8_1:62743528-62743547 None:intergenic 40.0%
CCTTTGTGTTTGAACATAGC+CGG + chr8_1:62743666-62743685 Msa1206010:intron 40.0%
CCTTTGTGTTTGAACATAGC+CGG - chr8_1:62743666-62743685 None:intergenic 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr8_1:62744015-62744034 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr8_1:62744051-62744070 Msa1206010:intron 40.0%
TTGGAACTAAGGTCAATGTC+TGG + chr8_1:62744253-62744272 Msa1206010:intron 40.0%
TGGAACTAAGGTCAATGTCT+GGG + chr8_1:62744254-62744273 Msa1206010:intron 40.0%
TAATCTTTGCTTCTAGGTCG+AGG - chr8_1:62744418-62744437 None:intergenic 40.0%
AAAGCTGGAGTAGTCAAACA+CGG + chr8_1:62744519-62744538 Msa1206010:CDS 40.0%
AAAATGGCGCACAATACTCA+TGG + chr8_1:62744548-62744567 Msa1206010:CDS 40.0%
CTACTTTACTCAAGGCCAAT+TGG - chr8_1:62744844-62744863 None:intergenic 40.0%
ATTAAGCCCCTGACAATTTC+TGG + chr8_1:62744887-62744906 Msa1206010:CDS 40.0%
TGTTCCACCAGAAATTGTCA+GGG - chr8_1:62744897-62744916 None:intergenic 40.0%
ATGTTCCACCAGAAATTGTC+AGG - chr8_1:62744898-62744917 None:intergenic 40.0%
CTACAAATAGTTAGGGGCTT+AGG - chr8_1:62744929-62744948 None:intergenic 40.0%
AAGCCCCTAACTATTTGTAG+TGG + chr8_1:62744929-62744948 Msa1206010:CDS 40.0%
TACCTATAAGGAGTAAGGGA+AGG + chr8_1:62745375-62745394 Msa1206010:intron 40.0%
TTCCTTCCCTTACTCCTTAT+AGG - chr8_1:62745380-62745399 None:intergenic 40.0%
AGACCTTGTTAACTGTGCAA+TGG + chr8_1:62745428-62745447 Msa1206010:intron 40.0%
GAACCATTGCACAGTTAACA+AGG - chr8_1:62745434-62745453 None:intergenic 40.0%
GCCATTGCATGTCTTAATGA+TGG + chr8_1:62745607-62745626 Msa1206010:intron 40.0%
GCCATCATTAAGACATGCAA+TGG - chr8_1:62745611-62745630 None:intergenic 40.0%
TTGCATGTCTTAATGATGGC+AGG + chr8_1:62745611-62745630 Msa1206010:intron 40.0%
ATGTCTTAATGATGGCAGGT+TGG + chr8_1:62745615-62745634 Msa1206010:intron 40.0%
TGTCTTAATGATGGCAGGTT+GGG + chr8_1:62745616-62745635 Msa1206010:intron 40.0%
TGTCAATATGAAGGAGCCAA+AGG + chr8_1:62745663-62745682 Msa1206010:CDS 40.0%
GTCAATATGAAGGAGCCAAA+GGG + chr8_1:62745664-62745683 Msa1206010:CDS 40.0%
TGCCATTGCTTCTTACATAG+AGG + chr8_1:62745699-62745718 Msa1206010:CDS 40.0%
! CTTTTATGTGCAGTCTCACT+TGG + chr8_1:62745758-62745777 Msa1206010:intron 40.0%
AGTTACCTGTGATTTAGGCT+TGG + chr8_1:62745890-62745909 Msa1206010:intron 40.0%
AGATGGTAGAAACTTGGCTT+AGG + chr8_1:62746252-62746271 Msa1206010:intron 40.0%
AAACTTGGCTTAGGTGGTTT+GGG + chr8_1:62746261-62746280 Msa1206010:intron 40.0%
AAGGGTTGTCAAATCACTAG+AGG + chr8_1:62746332-62746351 Msa1206010:intron 40.0%
GCAATGACATATACGTTGAC+AGG + chr8_1:62746833-62746852 Msa1206010:intron 40.0%
! TGATAGCTCTGCCTCAATTT+GGG - chr8_1:62746997-62747016 None:intergenic 40.0%
! TTGATAGCTCTGCCTCAATT+TGG - chr8_1:62746998-62747017 None:intergenic 40.0%
ATGTCTTCCTTGGTACTTTG+TGG - chr8_1:62747676-62747695 None:intergenic 40.0%
TGGGTGTGTACCTAATCACT+GGG - chr8_1:62742438-62742457 None:intergenic 45.0%
TTGGGTGTGTACCTAATCAC+TGG - chr8_1:62742439-62742458 None:intergenic 45.0%
CCAGTCACATGCATTCAAGT+GGG - chr8_1:62742565-62742584 None:intergenic 45.0%
ACCAGTCACATGCATTCAAG+TGG - chr8_1:62742566-62742585 None:intergenic 45.0%
CCAGCCCTTTGTGAAAACAA+AGG - chr8_1:62742798-62742817 None:intergenic 45.0%
!!! CCTTTGTTTTCACAAAGGGC+TGG + chr8_1:62742795-62742814 Msa1206010:intron 45.0%
! GTTAGGTTGTGTTTGCGAGT+TGG + chr8_1:62742903-62742922 Msa1206010:intron 45.0%
!!! GTTTGCGAGTTGGTTTTTGG+AGG + chr8_1:62742913-62742932 Msa1206010:intron 45.0%
!!! AGTTGGTTTTTGGAAGGGAG+GGG - chr8_1:62743003-62743022 None:intergenic 45.0%
!!! GAGTTGGTTTTTGGAAGGGA+GGG - chr8_1:62743004-62743023 None:intergenic 45.0%
CTCCCTTCCAAAAACCAACT+CGG + chr8_1:62743003-62743022 Msa1206010:intron 45.0%
!!! CACCGAGTTGGTTTTTGGAA+GGG - chr8_1:62743008-62743027 None:intergenic 45.0%
GGCTTCAGTGACTTTGTGTT+GGG + chr8_1:62743089-62743108 Msa1206010:intron 45.0%
GACTTTGTGTTGGGTGACTT+TGG + chr8_1:62743098-62743117 Msa1206010:intron 45.0%
!! ATAGAGACAAAGGCACCGAA+AGG + chr8_1:62743212-62743231 Msa1206010:intron 45.0%
AATCCCAGCTGACTAACTTC+GGG - chr8_1:62743251-62743270 None:intergenic 45.0%
CAATCCCAGCTGACTAACTT+CGG - chr8_1:62743252-62743271 None:intergenic 45.0%
TATTGTGAAGGGGAAACCCT+TGG + chr8_1:62743396-62743415 Msa1206010:intron 45.0%
GGAGATAATTCTCTCCTCCA+AGG - chr8_1:62743416-62743435 None:intergenic 45.0%
!! TCTTTGGAATCCAGTGTGCT+TGG + chr8_1:62743472-62743491 Msa1206010:intron 45.0%
!! CTTTGGAATCCAGTGTGCTT+GGG + chr8_1:62743473-62743492 Msa1206010:intron 45.0%
TGTTAAGAACCCAAGCACAC+TGG - chr8_1:62743485-62743504 None:intergenic 45.0%
CCGGCTATGTTCAAACACAA+AGG - chr8_1:62743915-62743934 None:intergenic 45.0%
CCGGCTATGTTCAAACACAA+AGG + chr8_1:62743915-62743934 Msa1206010:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG + chr8_1:62743975-62743994 Msa1206010:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr8_1:62744047-62744066 Msa1206010:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr8_1:62744050-62744069 Msa1206010:intron 45.0%
! TACATCAGGTTGCACTGGAT+TGG + chr8_1:62744133-62744152 Msa1206010:intron 45.0%
! ACATCAGGTTGCACTGGATT+GGG + chr8_1:62744134-62744153 Msa1206010:intron 45.0%
!! ACATTGGGTTGGGTTGTTAG+TGG + chr8_1:62744213-62744232 Msa1206010:intron 45.0%
TCTGCAGTCCATTTCTGCTT+AGG - chr8_1:62744483-62744502 None:intergenic 45.0%
! ATGGACTGCAGAAGAAGAAG+CGG + chr8_1:62744491-62744510 Msa1206010:CDS 45.0%
AAGCTGGAGTAGTCAAACAC+GGG + chr8_1:62744520-62744539 Msa1206010:CDS 45.0%
CGCAAAATGGAACTGAACTC+AGG - chr8_1:62744576-62744595 None:intergenic 45.0%
ATTCGAACGCGTACGCAAAA+TGG - chr8_1:62744589-62744608 None:intergenic 45.0%
GCGTTCGAATGTAGATCTCA+AGG + chr8_1:62744599-62744618 Msa1206010:CDS 45.0%
!!! TTATTGTCAGTTTTGGGGGC+TGG - chr8_1:62744821-62744840 None:intergenic 45.0%
GTTCCACCAGAAATTGTCAG+GGG - chr8_1:62744896-62744915 None:intergenic 45.0%
ATCTCCATGATTGTGGTGCT+TGG + chr8_1:62745046-62745065 Msa1206010:intron 45.0%
CAAACCAAGCACCACAATCA+TGG - chr8_1:62745053-62745072 None:intergenic 45.0%
! TAGCACCTTTGTGAGGTATC+TGG + chr8_1:62745267-62745286 Msa1206010:intron 45.0%
! TGGGTGTGCCATTGTAAAGA+GGG - chr8_1:62745806-62745825 None:intergenic 45.0%
! TTGGGTGTGCCATTGTAAAG+AGG - chr8_1:62745807-62745826 None:intergenic 45.0%
ATGCTCCAAGCCTAAATCAC+AGG - chr8_1:62745898-62745917 None:intergenic 45.0%
GTCAGCAAAATTGCAGCAGA+TGG + chr8_1:62746061-62746080 Msa1206010:CDS 45.0%
GACAAGTGGCAAAATAGTCC+AGG + chr8_1:62746085-62746104 Msa1206010:CDS 45.0%
AGAGAGAGAGAGAGAGAGAT+CGG + chr8_1:62746209-62746228 Msa1206010:intron 45.0%
TGGTAGAAACTTGGCTTAGG+TGG + chr8_1:62746255-62746274 Msa1206010:intron 45.0%
GAAACTTGGCTTAGGTGGTT+TGG + chr8_1:62746260-62746279 Msa1206010:intron 45.0%
AAGCTCTTCTCTGATGCTTG+TGG + chr8_1:62746908-62746927 Msa1206010:CDS 45.0%
AGGCAGAGCTATCAAAAGTG+AGG + chr8_1:62747003-62747022 Msa1206010:CDS 45.0%
GGCAGAGCTATCAAAAGTGA+GGG + chr8_1:62747004-62747023 Msa1206010:CDS 45.0%
GCAGAGCTATCAAAAGTGAG+GGG + chr8_1:62747005-62747024 Msa1206010:CDS 45.0%
CAGAGCTATCAAAAGTGAGG+GGG + chr8_1:62747006-62747025 Msa1206010:CDS 45.0%
CTTTGCAAAAGCAGCGATGA+AGG + chr8_1:62747157-62747176 Msa1206010:CDS 45.0%
TCTAATGGAGTGACTGACTG+AGG - chr8_1:62747218-62747237 None:intergenic 45.0%
TGTGAATTGTGCAGATGTCG+TGG + chr8_1:62747438-62747457 Msa1206010:intron 45.0%
TTGTTGATCATTGGCCAAGC+TGG + chr8_1:62747469-62747488 Msa1206010:three_prime_UTR 45.0%
ACCATTATCTCAAGCCAGCT+TGG - chr8_1:62747486-62747505 None:intergenic 45.0%
GTACCAAGGAAGACATGCAA+TGG + chr8_1:62747680-62747699 Msa1206010:three_prime_UTR 45.0%
GTTCCATTGCATGTCTTCCT+TGG - chr8_1:62747686-62747705 None:intergenic 45.0%
GCAATTTCGATTGGCACATG+CGG + chr8_1:62747757-62747776 Msa1206010:three_prime_UTR 45.0%
!!! TTCTTTTAAAAATAATAAAA+AGG - chr8_1:62747638-62747657 None:intergenic 5.0%
CTCATCATCGCCCAGTGATT+AGG + chr8_1:62742425-62742444 Msa1206010:five_prime_UTR 50.0%
CCCACTTGAATGCATGTGAC+TGG + chr8_1:62742562-62742581 Msa1206010:intron 50.0%
!!! TTTGGAGGGTTTTGAAGGGG+AGG + chr8_1:62742928-62742947 Msa1206010:intron 50.0%
!!! TTGGAGGGTTTTGAAGGGGA+GGG + chr8_1:62742929-62742948 Msa1206010:intron 50.0%
!! GTTTTTGGAAGGGAGGGGAT+TGG - chr8_1:62742998-62743017 None:intergenic 50.0%
!!! CGAGTTGGTTTTTGGAAGGG+AGG - chr8_1:62743005-62743024 None:intergenic 50.0%
!!! CCACCGAGTTGGTTTTTGGA+AGG - chr8_1:62743009-62743028 None:intergenic 50.0%
CCTTCCAAAAACCAACTCGG+TGG + chr8_1:62743006-62743025 Msa1206010:intron 50.0%
GGGCTTCAGTGACTTTGTGT+TGG + chr8_1:62743088-62743107 Msa1206010:intron 50.0%
ACTAACTTCGGGCTTGGCTT+CGG - chr8_1:62743240-62743259 None:intergenic 50.0%
AAGCCCGAAGTTAGTCAGCT+GGG + chr8_1:62743245-62743264 Msa1206010:intron 50.0%
GTCATGTGACCGTAAGGTCA+CGG + chr8_1:62743981-62744000 Msa1206010:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG + chr8_1:62743982-62744001 Msa1206010:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG - chr8_1:62743993-62744012 None:intergenic 50.0%
CTGAAACTCCCGCATATGCA+GGG - chr8_1:62744090-62744109 None:intergenic 50.0%
ACTGAAACTCCCGCATATGC+AGG - chr8_1:62744091-62744110 None:intergenic 50.0%
! AGGTTGCACTGGATTGGGTT+GGG + chr8_1:62744139-62744158 Msa1206010:intron 50.0%
CTTCTAGGTCGAGGAAAGCT+TGG - chr8_1:62744409-62744428 None:intergenic 50.0%
AGCTGTCGGATTTCCTTCCA+TGG + chr8_1:62744452-62744471 Msa1206010:exon 50.0%
GCTGTCGGATTTCCTTCCAT+GGG + chr8_1:62744453-62744472 Msa1206010:exon 50.0%
!! TTTCTGCTTAGGAGCACCCA+TGG - chr8_1:62744472-62744491 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + chr8_1:62744472-62744491 Msa1206010:CDS 50.0%
AGCTGGAGTAGTCAAACACG+GGG + chr8_1:62744521-62744540 Msa1206010:CDS 50.0%
TCAAACACGGGGCTGGAAAA+TGG + chr8_1:62744532-62744551 Msa1206010:CDS 50.0%
TCACAGCAATATGGGGATCC+CGG + chr8_1:62744765-62744784 Msa1206010:CDS 50.0%
! GGCAAGTTTTGCTTTCTGCC+GGG - chr8_1:62744786-62744805 None:intergenic 50.0%
! GGGCAAGTTTTGCTTTCTGC+CGG - chr8_1:62744787-62744806 None:intergenic 50.0%
! AAGCCCCTGACAATTTCTGG+TGG + chr8_1:62744890-62744909 Msa1206010:CDS 50.0%
GATCGCCAGATACCTCACAA+AGG - chr8_1:62745275-62745294 None:intergenic 50.0%
! GGGTGTGCCATTGTAAAGAG+GGG - chr8_1:62745805-62745824 None:intergenic 50.0%
TTGCAGCAGATGGTGACAAG+TGG + chr8_1:62746071-62746090 Msa1206010:CDS 50.0%
GAGAGAGAGAGAGAGAGATC+GGG + chr8_1:62746210-62746229 Msa1206010:intron 50.0%
AGAGAGAGAGAGAGAGATCG+GGG + chr8_1:62746211-62746230 Msa1206010:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - chr8_1:62746459-62746478 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + chr8_1:62746458-62746477 Msa1206010:intron 50.0%
TTCTCAGAGACCGCTGAACT+TGG - chr8_1:62746882-62746901 None:intergenic 50.0%
! TCAGCGGTCTCTGAGAAAAG+AGG + chr8_1:62746885-62746904 Msa1206010:CDS 50.0%
AGCGAGGTCCAAAGATTCTC+CGG + chr8_1:62746932-62746951 Msa1206010:CDS 50.0%
TCACACATCTTCTCCACCTC+CGG - chr8_1:62746954-62746973 None:intergenic 50.0%
AGCTGCAAAAGCAGTTGCAG+AGG + chr8_1:62747055-62747074 Msa1206010:CDS 50.0%
GATTGCAGAAGCTGAAGCTG+AGG + chr8_1:62747124-62747143 Msa1206010:CDS 50.0%
!! GCCAAGCTGGCTTGAGATAA+TGG + chr8_1:62747482-62747501 Msa1206010:three_prime_UTR 50.0%
TTGGAAGGGAGGGGATTGGA+GGG - chr8_1:62742994-62743013 None:intergenic 55.0%
TTTGGAAGGGAGGGGATTGG+AGG - chr8_1:62742995-62743014 None:intergenic 55.0%
CAGCTGACTAACTTCGGGCT+TGG - chr8_1:62743246-62743265 None:intergenic 55.0%
CAAGCCCGAAGTTAGTCAGC+TGG + chr8_1:62743244-62743263 Msa1206010:intron 55.0%
TGTGAAGGGGAAACCCTTGG+AGG + chr8_1:62743399-62743418 Msa1206010:intron 55.0%
GCACCAACACGACACTGATG+CGG + chr8_1:62743536-62743555 Msa1206010:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr8_1:62743994-62744013 Msa1206010:intron 55.0%
ATGCGGGAGTTTCAGTGCAC+CGG + chr8_1:62744095-62744114 Msa1206010:intron 55.0%
! CAGGTTGCACTGGATTGGGT+TGG + chr8_1:62744138-62744157 Msa1206010:intron 55.0%
!! TGCACTGGATTGGGTTGGGT+TGG + chr8_1:62744143-62744162 Msa1206010:intron 55.0%
!! GCACTGGATTGGGTTGGGTT+GGG + chr8_1:62744144-62744163 Msa1206010:intron 55.0%
!! TGGATTGGGTTGGGTTGGGT+TGG + chr8_1:62744148-62744167 Msa1206010:intron 55.0%
!! GGATTGGGTTGGGTTGGGTT+GGG + chr8_1:62744149-62744168 Msa1206010:intron 55.0%
!! TGCTTAGGAGCACCCATGGA+AGG - chr8_1:62744468-62744487 None:intergenic 55.0%
! GAAGAAGCGGCGTTGAAAGC+TGG + chr8_1:62744504-62744523 Msa1206010:CDS 55.0%
!!! TGTCAGTTTTGGGGGCTGGA+AGG - chr8_1:62744817-62744836 None:intergenic 55.0%
! GGAGCCAAAGGGTTCTGACA+AGG + chr8_1:62745675-62745694 Msa1206010:CDS 55.0%
! GCAGCCTTGTCAGAACCCTT+TGG - chr8_1:62745682-62745701 None:intergenic 55.0%
CTCTGATGCTTGTGGAAGCG+AGG + chr8_1:62746916-62746935 Msa1206010:CDS 55.0%
GAGGTCCAAAGATTCTCCGG+AGG + chr8_1:62746935-62746954 Msa1206010:CDS 55.0%
GTCCAAAGATTCTCCGGAGG+TGG + chr8_1:62746938-62746957 Msa1206010:CDS 55.0%
CTCCACCTCCGGAGAATCTT+TGG - chr8_1:62746943-62746962 None:intergenic 55.0%
GGCAGAAGTTGCCATTGCAC+AGG + chr8_1:62747076-62747095 Msa1206010:CDS 55.0%
! GGGAACGCCACAAAGTACCA+AGG + chr8_1:62747666-62747685 Msa1206010:three_prime_UTR 55.0%
!! GGCTTGGCTTCGGTGCCTTT+CGG - chr8_1:62743230-62743249 None:intergenic 60.0%
TCGCCGCATCAGTGTCGTGT+TGG - chr8_1:62743542-62743561 None:intergenic 60.0%
CGACACTGATGCGGCGAAAC+CGG + chr8_1:62743545-62743564 Msa1206010:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr8_1:62744063-62744082 Msa1206010:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr8_1:62744078-62744097 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr8_1:62744079-62744098 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr8_1:62744078-62744097 Msa1206010:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr8_1:62744079-62744098 Msa1206010:intron 60.0%
ACTCCCGCATATGCAGGGTC+CGG - chr8_1:62744085-62744104 None:intergenic 60.0%
TGCGGGAGTTTCAGTGCACC+GGG + chr8_1:62744096-62744115 Msa1206010:intron 60.0%
GGAGTAGTCAAACACGGGGC+TGG + chr8_1:62744525-62744544 Msa1206010:CDS 60.0%
GGGGGCTGGAAGGCTCTTAA+GGG - chr8_1:62744807-62744826 None:intergenic 60.0%
TGGGGGCTGGAAGGCTCTTA+AGG - chr8_1:62744808-62744827 None:intergenic 60.0%
GAGGGGGATGTCAGCTCAAG+AGG + chr8_1:62747022-62747041 Msa1206010:CDS 60.0%
GGGGATGTCAGCTCAAGAGG+CGG + chr8_1:62747025-62747044 Msa1206010:CDS 60.0%
! TGCTGCTTCGGCCTGTGCAA+TGG - chr8_1:62747090-62747109 None:intergenic 60.0%
ACAGGCCGAAGCAGCAGCTA+GGG + chr8_1:62747094-62747113 Msa1206010:CDS 60.0%
! CGGTCAGCGAAGAGAAGCGC+CGG - chr8_1:62743896-62743915 None:intergenic 65.0%
! CGGTCAGCGAAGAGAAGCGC+CGG + chr8_1:62743896-62743915 Msa1206010:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr8_1:62744065-62744084 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr8_1:62744080-62744099 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr8_1:62744084-62744103 None:intergenic 65.0%
CACAGGCCGAAGCAGCAGCT+AGG + chr8_1:62747093-62747112 Msa1206010:CDS 65.0%
! CGCCTCCCTAGCTGCTGCTT+CGG - chr8_1:62747102-62747121 None:intergenic 65.0%
CGAAGCAGCAGCTAGGGAGG+CGG + chr8_1:62747100-62747119 Msa1206010:CDS 65.0%
GGCCGAAGCAGCAGCTAGGG+AGG + chr8_1:62747097-62747116 Msa1206010:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 62742260 62747825 62742260 ID=Msa1206010;Name=Msa1206010
chr8_1 mRNA 62742260 62747825 62742260 ID=Msa1206010-mRNA-1;Parent=Msa1206010;Name=Msa1206010-mRNA-1;_AED=0.01;_eAED=0.01;_QI=272|1|1|1|0.66|0.42|7|382|308
chr8_1 exon 62742260 62742446 62742260 ID=Msa1206010-mRNA-1:exon:20322;Parent=Msa1206010-mRNA-1
chr8_1 exon 62744386 62744620 62744386 ID=Msa1206010-mRNA-1:exon:20323;Parent=Msa1206010-mRNA-1
chr8_1 exon 62744743 62744990 62744743 ID=Msa1206010-mRNA-1:exon:20324;Parent=Msa1206010-mRNA-1
chr8_1 exon 62745633 62745720 62745633 ID=Msa1206010-mRNA-1:exon:20325;Parent=Msa1206010-mRNA-1
chr8_1 exon 62746023 62746106 62746023 ID=Msa1206010-mRNA-1:exon:20326;Parent=Msa1206010-mRNA-1
chr8_1 exon 62746855 62747219 62746855 ID=Msa1206010-mRNA-1:exon:20327;Parent=Msa1206010-mRNA-1
chr8_1 exon 62747452 62747825 62747452 ID=Msa1206010-mRNA-1:exon:20328;Parent=Msa1206010-mRNA-1
chr8_1 five_prime_UTR 62742260 62742446 62742260 ID=Msa1206010-mRNA-1:five_prime_utr;Parent=Msa1206010-mRNA-1
chr8_1 five_prime_UTR 62744386 62744470 62744386 ID=Msa1206010-mRNA-1:five_prime_utr;Parent=Msa1206010-mRNA-1
chr8_1 CDS 62744471 62744620 62744471 ID=Msa1206010-mRNA-1:cds;Parent=Msa1206010-mRNA-1
chr8_1 CDS 62744743 62744990 62744743 ID=Msa1206010-mRNA-1:cds;Parent=Msa1206010-mRNA-1
chr8_1 CDS 62745633 62745720 62745633 ID=Msa1206010-mRNA-1:cds;Parent=Msa1206010-mRNA-1
chr8_1 CDS 62746023 62746106 62746023 ID=Msa1206010-mRNA-1:cds;Parent=Msa1206010-mRNA-1
chr8_1 CDS 62746855 62747211 62746855 ID=Msa1206010-mRNA-1:cds;Parent=Msa1206010-mRNA-1
chr8_1 three_prime_UTR 62747212 62747219 62747212 ID=Msa1206010-mRNA-1:three_prime_utr;Parent=Msa1206010-mRNA-1
chr8_1 three_prime_UTR 62747452 62747825 62747452 ID=Msa1206010-mRNA-1:three_prime_utr;Parent=Msa1206010-mRNA-1
Gene Sequence

>Msa1206010

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGTTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACAATACTCATGGATCCTGAGTTCAGTTCCATTTTGCGTACGCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCAAAACTTGCCCTTAAGAGCCTTCCAGCCCCCAAAACTGACAATAACCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACTTTCTCGATATTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGCCCCTAACTATTTGTAGTGGAACATTGCAATCTCCTAGTTCAAAAGAACAAGTATCAAGGTTGGGAGACAATAATGTATTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAAATTATGCCAAGTTCAGCGGTCTCTGAGAAAAGAGGAAGCTCTTCTCTGATGCTTGTGGAAGCGAGGTCCAAAGATTCTCCGGAGGTGGAGAAGATGTGTGATGTCAACATCCTTTCAAAATCCCAAATTGAGGCAGAGCTATCAAAAGTGAGGGGGATGTCAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCCGAAGCAGCAGCTAGGGAGGCGGAGATTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGATGAAGGCACTCAAATGCAAAATGCTTCATATTTGGTAG
Protein sequence

>Msa1206010

MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKSLPAPKTDNNQLALSKVVQREDFLDIKPLTISGGTLQSPKPLTICSGTLQSPSSKEQVSRLGDNNVLEAIVNMKEPKGSDKAAIASYIEEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVSEKRGSSSLMLVEARSKDSPEVEKMCDVNILSKSQIEAELSKVRGMSAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAMKALKCKMLHIW*