AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297100 MtrunA17_Chr4g0054131 98.382 309 4 1 1 308 1 309 0.0 608
Msa1297100 MtrunA17_Chr5g0401061 65.806 310 88 6 1 308 1 294 3.66e-106 311
Msa1297100 MtrunA17_Chr2g0293381 45.276 254 120 6 1 250 1 239 4.04e-66 209
Msa1297100 MtrunA17_Chr8g0384671 44.531 256 117 6 1 250 1 237 8.24e-64 203
Msa1297100 MtrunA17_Chr1g0166681 69.048 84 25 1 1 84 1 83 7.92e-33 120
Msa1297100 MtrunA17_Chr8g0342871 36.071 280 153 8 1 280 1 254 8.34e-33 122
Msa1297100 MtrunA17_Chr2g0329921 37.500 216 114 5 1 201 1 210 2.38e-32 121
Msa1297100 MtrunA17_Chr8g0383821 48.305 118 57 3 1 114 1 118 3.00e-29 108
Msa1297100 MtrunA17_Chr1g0195261 70.000 50 15 0 1 50 1 50 6.12e-17 73.6
Msa1297100 MtrunA17_Chr1g0195251 37.097 124 68 5 136 256 296 412 2.36e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297100 AT5G67580.2 50.000 310 142 4 1 308 1 299 8.60e-72 224
Msa1297100 AT5G67580.1 50.000 310 142 4 1 308 1 299 8.60e-72 224
Msa1297100 AT3G49850.1 47.386 306 143 6 1 304 1 290 4.37e-65 207
Msa1297100 AT3G49850.2 47.386 306 143 6 1 304 1 290 4.37e-65 207
Msa1297100 AT1G49950.3 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1297100 AT1G49950.1 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1297100 AT1G49950.2 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1297100 AT1G72740.2 31.959 291 145 7 1 280 1 249 2.42e-30 116
Msa1297100 AT1G72740.1 31.773 299 141 9 1 280 1 255 3.89e-28 110
Msa1297100 AT1G17520.4 31.802 283 165 6 1 280 1 258 5.02e-28 110
Msa1297100 AT1G17520.1 32.155 283 170 7 1 280 1 264 3.24e-27 108
Msa1297100 AT1G17520.3 32.042 284 164 7 1 280 1 259 1.10e-26 106
Msa1297100 AT1G17520.2 32.394 284 169 8 1 280 1 265 8.11e-26 104

Find 108 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCCCCTGACAATTTC+TGG 0.156688 8_3:-57024638 Msa1297100:CDS
AATGCAAAATGCTTCATATT+TGG 0.195627 8_3:-57022551 Msa1297100:CDS
TTGATAGCTCTGCCTCAATT+TGG 0.196523 8_3:+57022742 None:intergenic
CAATTGGTTATTGTCAGTTT+TGG 0.201241 8_3:+57024700 None:intergenic
AGAATTTAATCTTTGCTTCT+AGG 0.203601 8_3:+57025104 None:intergenic
ATTCGAACGCGTACGCAAAA+TGG 0.224697 8_3:+57024939 None:intergenic
GACAATAACTTTCTAAGATT+TGG 0.247003 8_3:+57023671 None:intergenic
TAACTTTCGGCTTGTAAATC+TGG 0.250955 8_3:-57022192 Msa1297100:three_prime_UTR
CTCCACCTCCGGAGAATCTT+TGG 0.268223 8_3:+57022797 None:intergenic
GCCAAGCTGGCTTGAGATAA+TGG 0.285939 8_3:-57022258 Msa1297100:three_prime_UTR
TGTATTGTGAACAGGATAAA+TGG 0.295045 8_3:-57024796 Msa1297100:intron
TGATAGCTCTGCCTCAATTT+GGG 0.303115 8_3:+57022743 None:intergenic
ATGTTCCACTACAAATAGTT+AGG 0.338025 8_3:+57024591 None:intergenic
TTGTAGATGTACATAACTTT+CGG 0.349440 8_3:-57022205 Msa1297100:three_prime_UTR
TCAAACACGGGGCTGGAAAA+TGG 0.376865 8_3:-57024993 Msa1297100:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 8_3:+57025045 None:intergenic
CTACTTTACTCAAGGCCAAT+TGG 0.386042 8_3:+57024684 None:intergenic
ATATAAATGTCACAGCAATA+TGG 0.388272 8_3:-57024769 Msa1297100:CDS
CGCCTCCCTAGCTGCTGCTT+CGG 0.390489 8_3:+57022638 None:intergenic
ACAAAATGAAGATACACAAT+TGG 0.394358 8_3:-57027027 Msa1297100:five_prime_UTR
ATGTCTTCCTTGGTACTTTG+TGG 0.410914 8_3:+57022068 None:intergenic
TTGGGTGTGTACCTAATCAC+TGG 0.410969 8_3:+57026906 None:intergenic
CTCATCATCGCCCAGTGATT+AGG 0.412971 8_3:-57026917 Msa1297100:intron
CTACAAATAGTTAGGGGCTT+AGG 0.415247 8_3:+57024599 None:intergenic
CAATTTGGATACATTACATT+CGG 0.418387 8_3:-57027095 None:intergenic
ATGTTCCACCAGAAATTGTC+AGG 0.418565 8_3:+57024630 None:intergenic
TTCTCAGAGACCGCTGAACT+TGG 0.424839 8_3:+57022858 None:intergenic
GAAGAAGCGGCGTTGAAAGC+TGG 0.427269 8_3:-57025021 Msa1297100:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.427716 8_3:-57025053 Msa1297100:CDS
TGCTGCTTCGGCCTGTGCAA+TGG 0.434469 8_3:+57022650 None:intergenic
TATAAATGTCACAGCAATAT+GGG 0.435123 8_3:-57024768 Msa1297100:CDS
CTTCTAGGTCGAGGAAAGCT+TGG 0.440974 8_3:+57025119 None:intergenic
GGGAGACAATAATGTATTAG+AGG 0.441902 8_3:-57024076 Msa1297100:CDS
AATAACTTTCTAAGATTTGG+TGG 0.446528 8_3:+57023674 None:intergenic
TTGTTGATCATTGGCCAAGC+TGG 0.446644 8_3:-57022271 Msa1297100:three_prime_UTR
GTTCCATTGCATGTCTTCCT+TGG 0.447588 8_3:+57022058 None:intergenic
TGTGAATTGTGCAGATGTCC+TGG 0.455642 8_3:-57022302 Msa1297100:intron
GCAGCCTTGTCAGAACCCTT+TGG 0.463786 8_3:+57024033 None:intergenic
AGCTGCAAAAGCAGTTGCAG+AGG 0.469233 8_3:-57022682 Msa1297100:CDS
CCTTCAGTTGCAATTTCGAT+TGG 0.472163 8_3:-57021993 Msa1297100:three_prime_UTR
CGAAGCAGCAGCTAGGGAGG+CGG 0.477225 8_3:-57022637 Msa1297100:CDS
CAAAACTGACAATAACCAAT+TGG 0.479938 8_3:-57024699 Msa1297100:CDS
GGAGTAGTCAAACACGGGGC+TGG 0.481269 8_3:-57025000 Msa1297100:CDS
CTTTGCAAAAGCAGCGATGA+AGG 0.481859 8_3:-57022580 Msa1297100:CDS
GTCCAAAGATTCTCCGGAGG+TGG 0.481885 8_3:-57022799 Msa1297100:CDS
ACAGGCCGAAGCAGCAGCTA+GGG 0.483254 8_3:-57022643 Msa1297100:CDS
ACCATTATCTCAAGCCAGCT+TGG 0.485905 8_3:+57022257 None:intergenic
TAATCTTTGCTTCTAGGTCG+AGG 0.487452 8_3:+57025110 None:intergenic
GGCCGAAGCAGCAGCTAGGG+AGG 0.499766 8_3:-57022640 Msa1297100:CDS
TGTTCCACTACAAATAGTTA+GGG 0.500173 8_3:+57024592 None:intergenic
AGCGAGGTCCAAAGATTCTC+CGG 0.502665 8_3:-57022805 Msa1297100:CDS
AGCTGTCGGATTTCCTTCCA+TGG 0.503125 8_3:-57025073 Msa1297100:exon
TCACACATCTTCTCCACCTC+CGG 0.506821 8_3:+57022786 None:intergenic
CACAGGCCGAAGCAGCAGCT+AGG 0.511915 8_3:-57022644 Msa1297100:CDS
CAAAATGAAGATACACAATT+GGG 0.514762 8_3:-57027026 Msa1297100:five_prime_UTR
TGCCATTGCTTCTTACATAG+AGG 0.516855 8_3:-57024013 Msa1297100:intron
GTCAATATGAAGGAGCCAAA+GGG 0.526790 8_3:-57024048 Msa1297100:CDS
GTTCAAAAGAACAAGTATCA+AGG 0.540828 8_3:-57024556 Msa1297100:intron
ATCCGAATGAATTTGCAAAA+CGG 0.542357 8_3:+57026974 None:intergenic
CCTTTCAAAATCCCAAATTG+AGG 0.542802 8_3:-57022754 Msa1297100:CDS
TACCTCTATGTAAGAAGCAA+TGG 0.545469 8_3:+57024011 None:intergenic
TCACAGCAATATGGGGATCC+CGG 0.546612 8_3:-57024760 Msa1297100:CDS
GGCAGAAGTTGCCATTGCAC+AGG 0.551573 8_3:-57022661 Msa1297100:CDS
CGCAAAATGGAACTGAACTC+AGG 0.555443 8_3:+57024952 None:intergenic
AAGCTCTTCTCTGATGCTTG+TGG 0.556765 8_3:-57022829 Msa1297100:CDS
TTTCTGCTTAGGAGCACCCA+TGG 0.559262 8_3:+57025056 None:intergenic
AGAGGCTATTGTCAATATGA+AGG 0.562785 8_3:-57024058 Msa1297100:CDS
TGCTTAGGAGCACCCATGGA+AGG 0.563582 8_3:+57025060 None:intergenic
CTCTGATGCTTGTGGAAGCG+AGG 0.566860 8_3:-57022821 Msa1297100:CDS
TGATCAACAAGCGAAAATCC+AGG 0.567860 8_3:+57022284 None:intergenic
TGTCAATATGAAGGAGCCAA+AGG 0.567981 8_3:-57024049 Msa1297100:CDS
GTCAGCAAAATTGCAGCAGA+TGG 0.568574 8_3:-57023651 Msa1297100:CDS
GACAAGTGGCAAAATAGTCC+AGG 0.570447 8_3:-57023627 Msa1297100:intron
AAAATGGCGCACAATACTCA+TGG 0.571706 8_3:-57024977 Msa1297100:CDS
TCAGCGGTCTCTGAGAAAAG+AGG 0.571845 8_3:-57022852 Msa1297100:CDS
ACGTTGAACTACTTTACTCA+AGG 0.573317 8_3:+57024676 None:intergenic
GGCAGAGCTATCAAAAGTGA+GGG 0.588740 8_3:-57022733 Msa1297100:CDS
GCAATTTCGATTGGCACATG+CGG 0.590500 8_3:-57021984 Msa1297100:three_prime_UTR
CCAATCGAAATTGCAACTGA+AGG 0.594227 8_3:+57021993 None:intergenic
GCTGTCGGATTTCCTTCCAT+GGG 0.598928 8_3:-57025072 Msa1297100:exon
CAAAATTATGCCAAGTTCAG+CGG 0.601681 8_3:-57022868 Msa1297100:CDS
AAGCCCCTAACTATTTGTAG+TGG 0.611891 8_3:-57024596 Msa1297100:CDS
GCGTTCGAATGTAGATCTCA+AGG 0.619214 8_3:-57024926 Msa1297100:intron
TGGGTGTGTACCTAATCACT+GGG 0.626177 8_3:+57026907 None:intergenic
TCGAACAAGCAATGTAAACA+TGG 0.626480 8_3:+57021961 None:intergenic
AAGCTGGAGTAGTCAAACAC+GGG 0.628346 8_3:-57025005 Msa1297100:CDS
AGGCAGAGCTATCAAAAGTG+AGG 0.628730 8_3:-57022734 Msa1297100:CDS
GATTGCAGAAGCTGAAGCTG+AGG 0.636628 8_3:-57022613 Msa1297100:CDS
GGGGATGTCAGCTCAAGAGG+CGG 0.637055 8_3:-57022712 Msa1297100:CDS
AAGCCCCTGACAATTTCTGG+TGG 0.637720 8_3:-57024635 Msa1297100:CDS
GGAGCCAAAGGGTTCTGACA+AGG 0.637821 8_3:-57024037 Msa1297100:CDS
GTACCAAGGAAGACATGCAA+TGG 0.638053 8_3:-57022061 Msa1297100:three_prime_UTR
TACATTCGGAATAAATGACA+AGG 0.642668 8_3:-57027081 Msa1297100:five_prime_UTR
GCTTGTAAATCTGGAATATG+CGG 0.648307 8_3:-57022183 Msa1297100:three_prime_UTR
TTGCAGCAGATGGTGACAAG+TGG 0.648634 8_3:-57023641 Msa1297100:CDS
ATAAATGTCACAGCAATATG+GGG 0.648999 8_3:-57024767 Msa1297100:CDS
TGTTCCACCAGAAATTGTCA+GGG 0.649357 8_3:+57024631 None:intergenic
ATGGACTGCAGAAGAAGAAG+CGG 0.652524 8_3:-57025034 Msa1297100:CDS
ATTGTGAACAGGATAAATGG+AGG 0.664041 8_3:-57024793 Msa1297100:intron
CAGAGCTATCAAAAGTGAGG+GGG 0.676061 8_3:-57022731 Msa1297100:CDS
AAAGCTGGAGTAGTCAAACA+CGG 0.681254 8_3:-57025006 Msa1297100:CDS
GTTCCACTACAAATAGTTAG+GGG 0.682877 8_3:+57024593 None:intergenic
GCAGAGCTATCAAAAGTGAG+GGG 0.684532 8_3:-57022732 Msa1297100:CDS
GTTCCACCAGAAATTGTCAG+GGG 0.692592 8_3:+57024632 None:intergenic
GGGAACACCACAAAGTACCA+AGG 0.710706 8_3:-57022075 Msa1297100:three_prime_UTR
GAGGTCCAAAGATTCTCCGG+AGG 0.723417 8_3:-57022802 Msa1297100:CDS
AGCTGGAGTAGTCAAACACG+GGG 0.727088 8_3:-57025004 Msa1297100:CDS
ACATTCGGAATAAATGACAA+GGG 0.735959 8_3:-57027080 Msa1297100:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATACATATTTGATA+TGG - chr8_3:57022640-57022659 Msa1297100:CDS 10.0%
!!! TTTACTTAATTATATTTTGT+TGG - chr8_3:57023782-57023801 Msa1297100:intron 10.0%
!!! CTTCTTTTAAAAATAATAAA+AGG + chr8_3:57026918-57026937 None:intergenic 10.0%
!! TCAAAAAATTATAGAAGAAT+CGG + chr8_3:57022140-57022159 None:intergenic 15.0%
!!! AATGTTGTTTTTTTCTTAAT+GGG - chr8_3:57022300-57022319 Msa1297100:intron 15.0%
!! GATAAAAATTGCATTTAAAA+AGG + chr8_3:57022349-57022368 None:intergenic 15.0%
!! ATATTACAATGTTATAACTT+AGG - chr8_3:57022536-57022555 Msa1297100:intron 15.0%
!!! CACTTTTATTAAGAAAAAAT+AGG + chr8_3:57022944-57022963 None:intergenic 15.0%
!!! TTCATTTTAATGTTTATTGA+TGG - chr8_3:57023850-57023869 Msa1297100:intron 15.0%
!! TAGTATTGTTGAAAATATAA+GGG - chr8_3:57024639-57024658 Msa1297100:CDS 15.0%
!! TTTATTAATTGTTACCTATA+AGG - chr8_3:57024671-57024690 Msa1297100:CDS 15.0%
!! AAAAAGTAAAATAAAAGCTA+TGG + chr8_3:57026895-57026914 None:intergenic 15.0%
!! AAAATTGAAACTTTCTTTGA+GGG + chr8_3:57022175-57022194 None:intergenic 20.0%
!! AAAAATTGAAACTTTCTTTG+AGG + chr8_3:57022176-57022195 None:intergenic 20.0%
!! CTTCTAACAAAACAAAAAAA+TGG + chr8_3:57022200-57022219 None:intergenic 20.0%
!!! CAATGTTGTTTTTTTCTTAA+TGG - chr8_3:57022299-57022318 Msa1297100:intron 20.0%
!! ATAGGACTATTTGTATAAAT+AGG - chr8_3:57022807-57022826 Msa1297100:CDS 20.0%
!! AAGAAAAAATAGGAAAGAAT+AGG + chr8_3:57022934-57022953 None:intergenic 20.0%
!!! TAATAAAAGTGTTCTTTCTT+TGG - chr8_3:57022953-57022972 Msa1297100:intron 20.0%
!!! TCTATTTCTCAAATTATTAC+CGG + chr8_3:57023062-57023081 None:intergenic 20.0%
!! CTAGTATTGTTGAAAATATA+AGG - chr8_3:57024638-57024657 Msa1297100:CDS 20.0%
!! AGTATTGTTGAAAATATAAG+GGG - chr8_3:57024640-57024659 Msa1297100:CDS 20.0%
!! AATAAATTATTTGATCTTGC+TGG - chr8_3:57025906-57025925 Msa1297100:intron 20.0%
!! GTTGACAATGATAAATAAAT+TGG - chr8_3:57025948-57025967 Msa1297100:intron 20.0%
!! CAATTCAAATAAAACTATCA+TGG + chr8_3:57026044-57026063 None:intergenic 20.0%
!! ATCAAAATCTAATCAAGTAA+CGG + chr8_3:57026558-57026577 None:intergenic 20.0%
!!! ATTTTTAAAAGAAGACAATG+AGG - chr8_3:57026924-57026943 Msa1297100:five_prime_UTR 20.0%
!!! TTTTTAAAAGAAGACAATGA+GGG - chr8_3:57026925-57026944 Msa1297100:five_prime_UTR 20.0%
! ACAAAATGAAGATACACAAT+TGG - chr8_3:57021993-57022012 Msa1297100:three_prime_UTR 25.0%
! CAAAATGAAGATACACAATT+GGG - chr8_3:57021994-57022013 Msa1297100:three_prime_UTR 25.0%
! AAATTATAGAAGAATCGGTT+GGG + chr8_3:57022135-57022154 None:intergenic 25.0%
! AAAATTATAGAAGAATCGGT+TGG + chr8_3:57022136-57022155 None:intergenic 25.0%
!!! TTGTTTTTTTCTTAATGGGT+GGG - chr8_3:57022304-57022323 Msa1297100:intron 25.0%
! GCATCAAAATGCAAAATTTA+GGG + chr8_3:57022410-57022429 None:intergenic 25.0%
! TGCATCAAAATGCAAAATTT+AGG + chr8_3:57022411-57022430 None:intergenic 25.0%
! ATAACTTAGGTTAGAATATG+TGG - chr8_3:57022549-57022568 Msa1297100:CDS 25.0%
! AATTTAAATAACTACCGAGT+TGG + chr8_3:57022708-57022727 None:intergenic 25.0%
! AACTCGGTAGTTATTTAAAT+TGG - chr8_3:57022707-57022726 Msa1297100:CDS 25.0%
!! AGTCTTATAGAAGTTGTTAT+AGG - chr8_3:57022753-57022772 Msa1297100:CDS 25.0%
! GTCTTATAGAAGTTGTTATA+GGG - chr8_3:57022754-57022773 Msa1297100:CDS 25.0%
!! GTTATGAAAAGAATTTTCGT+CGG + chr8_3:57023371-57023390 None:intergenic 25.0%
!! GTTATGAAAAGAATTTTCGT+CGG - chr8_3:57023371-57023390 Msa1297100:intron 25.0%
! ACACAAAGGAATATATTACA+TGG - chr8_3:57023424-57023443 Msa1297100:intron 25.0%
! ATATATTACATGGTTACATC+AGG - chr8_3:57023434-57023453 Msa1297100:intron 25.0%
! CAACCTGATGTAAAAAAAAA+GGG + chr8_3:57023620-57023639 None:intergenic 25.0%
! GTGCTATATTGTTTAACATT+GGG - chr8_3:57023693-57023712 Msa1297100:intron 25.0%
! TATATTGTTTAACATTGGGT+TGG - chr8_3:57023697-57023716 Msa1297100:intron 25.0%
! ATATTGTTTAACATTGGGTT+GGG - chr8_3:57023698-57023717 Msa1297100:intron 25.0%
!! TATTGATGGTCATATAGAAA+AGG - chr8_3:57023864-57023883 Msa1297100:intron 25.0%
! AGAATTTAATCTTTGCTTCT+AGG + chr8_3:57023919-57023938 None:intergenic 25.0%
!! TATCTTTATGTATTTCTGCT+AGG + chr8_3:57024138-57024157 None:intergenic 25.0%
! ATATAAATGTCACAGCAATA+TGG - chr8_3:57024251-57024270 Msa1297100:intron 25.0%
! TATAAATGTCACAGCAATAT+GGG - chr8_3:57024252-57024271 Msa1297100:intron 25.0%
!! AATTGGTTATTGTCAGTTTT+GGG + chr8_3:57024322-57024341 None:intergenic 25.0%
! TGAAAATATAAGGGGAAAAA+AGG - chr8_3:57024648-57024667 Msa1297100:CDS 25.0%
!!! TGATTGCATTATGCTTTTTT+GGG + chr8_3:57025133-57025152 None:intergenic 25.0%
! TTAAAAGTTACCTGTGATTT+AGG - chr8_3:57025193-57025212 Msa1297100:intron 25.0%
! AATTACTTTCAATGCAATGA+CGG + chr8_3:57025284-57025303 None:intergenic 25.0%
!! ACTTTTCATTTCATCTCTAT+AGG - chr8_3:57025309-57025328 Msa1297100:intron 25.0%
!!! AATAACTTTCTAAGATTTGG+TGG + chr8_3:57025349-57025368 None:intergenic 25.0%
!!! GACAATAACTTTCTAAGATT+TGG + chr8_3:57025352-57025371 None:intergenic 25.0%
! CAACTGAATATAAAATTACC+TGG + chr8_3:57025414-57025433 None:intergenic 25.0%
!! CAGGTAATTTTATATTCAGT+TGG - chr8_3:57025412-57025431 Msa1297100:intron 25.0%
!! ATGAAACACTTTAGTCTTTA+AGG + chr8_3:57025868-57025887 None:intergenic 25.0%
!!! CCGAATTTTGTTTTTTAGTT+GGG + chr8_3:57026076-57026095 None:intergenic 25.0%
! CCCAACTAAAAAACAAAATT+CGG - chr8_3:57026073-57026092 Msa1297100:intron 25.0%
!!! ACCGAATTTTGTTTTTTAGT+TGG + chr8_3:57026077-57026096 None:intergenic 25.0%
! AATGCAAAATGCTTCATATT+TGG - chr8_3:57026469-57026488 Msa1297100:intron 25.0%
! TCAAAATCTAATCAAGTAAC+GGG + chr8_3:57026557-57026576 None:intergenic 25.0%
!!! TTGATTAGATTTTGATCTGT+AGG - chr8_3:57026562-57026581 Msa1297100:intron 25.0%
! TGTACATCTACAAAAAGAAT+TGG + chr8_3:57026808-57026827 None:intergenic 25.0%
! TTGTAGATGTACATAACTTT+CGG - chr8_3:57026815-57026834 Msa1297100:intron 25.0%
!! GATTCATGAAACATTTTATC+AGG - chr8_3:57026863-57026882 Msa1297100:intron 25.0%
TACATTCGGAATAAATGACA+AGG - chr8_3:57021939-57021958 Msa1297100:three_prime_UTR 30.0%
ACATTCGGAATAAATGACAA+GGG - chr8_3:57021940-57021959 Msa1297100:three_prime_UTR 30.0%
! GAAAATTTTCAGAGGAAAAG+TGG - chr8_3:57021965-57021984 Msa1297100:three_prime_UTR 30.0%
ATCCGAATGAATTTGCAAAA+CGG + chr8_3:57022049-57022068 None:intergenic 30.0%
!!! GTTGTTTTTTTCTTAATGGG+TGG - chr8_3:57022303-57022322 Msa1297100:intron 30.0%
! GCATTATTGTAAGTTTTTCC+AGG - chr8_3:57022433-57022452 Msa1297100:intron 30.0%
!!! TTCTACCTTTGTTTTCACAA+AGG - chr8_3:57022468-57022487 Msa1297100:intron 30.0%
!!! TCTACCTTTGTTTTCACAAA+GGG - chr8_3:57022469-57022488 Msa1297100:intron 30.0%
!!! GTTTTTGGAGTGTTTTAGAA+GGG + chr8_3:57022686-57022705 None:intergenic 30.0%
TTATAGGGTTGTTAGTTAGT+TGG - chr8_3:57022769-57022788 Msa1297100:CDS 30.0%
ATATATTGCATGGTTACATC+AGG + chr8_3:57023140-57023159 None:intergenic 30.0%
ACACAAAGGAATATATTGCA+TGG + chr8_3:57023150-57023169 None:intergenic 30.0%
ATTGAGATAATCTTCAGTCA+AGG - chr8_3:57023232-57023251 Msa1297100:intron 30.0%
TTGAGATAATCTTCAGTCAA+GGG - chr8_3:57023233-57023252 Msa1297100:intron 30.0%
GAAAACAATGTAATGCACAT+TGG + chr8_3:57023314-57023333 None:intergenic 30.0%
GAAAACAATGTAATGCACAT+TGG - chr8_3:57023314-57023333 Msa1297100:intron 30.0%
TTGAGATAATCTTCAGTCAA+GGG + chr8_3:57023233-57023252 None:intergenic 30.0%
ATTGAGATAATCTTCAGTCA+AGG + chr8_3:57023232-57023251 None:intergenic 30.0%
!!! TTGCCCTTTTTTTTTACATC+AGG - chr8_3:57023614-57023633 Msa1297100:intron 30.0%
GCAACCTGATGTAAAAAAAA+AGG + chr8_3:57023621-57023640 None:intergenic 30.0%
! ATAGAAGTAATCTGAAGTGT+CGG - chr8_3:57023671-57023690 Msa1297100:CDS 30.0%
! GGTGCTATATTGTTTAACAT+TGG - chr8_3:57023692-57023711 Msa1297100:CDS 30.0%
AATTCTCACAAAAAAGCTGT+CGG - chr8_3:57023933-57023952 Msa1297100:intron 30.0%
TGTATTGTGAACAGGATAAA+TGG - chr8_3:57024224-57024243 Msa1297100:intron 30.0%
ATAAATGTCACAGCAATATG+GGG - chr8_3:57024253-57024272 Msa1297100:intron 30.0%
! ATTGGTTATTGTCAGTTTTG+GGG + chr8_3:57024321-57024340 None:intergenic 30.0%
! CAATTGGTTATTGTCAGTTT+TGG + chr8_3:57024323-57024342 None:intergenic 30.0%
CAAAACTGACAATAACCAAT+TGG - chr8_3:57024321-57024340 Msa1297100:intron 30.0%
TGTTCCACTACAAATAGTTA+GGG + chr8_3:57024431-57024450 None:intergenic 30.0%
ATGTTCCACTACAAATAGTT+AGG + chr8_3:57024432-57024451 None:intergenic 30.0%
! GATACTTGTTCTTTTGAACT+AGG + chr8_3:57024463-57024482 None:intergenic 30.0%
GTTCAAAAGAACAAGTATCA+AGG - chr8_3:57024464-57024483 Msa1297100:intron 30.0%
AGAAATTATCTCCATGATTG+TGG - chr8_3:57024534-57024553 Msa1297100:intron 30.0%
TAGACCTAATTACTCATAAG+GGG + chr8_3:57024621-57024640 None:intergenic 30.0%
CTAGACCTAATTACTCATAA+GGG + chr8_3:57024622-57024641 None:intergenic 30.0%
ACTAGACCTAATTACTCATA+AGG + chr8_3:57024623-57024642 None:intergenic 30.0%
ATTGTTACCTATAAGGAGTA+AGG - chr8_3:57024678-57024697 Msa1297100:CDS 30.0%
TTGTTACCTATAAGGAGTAA+GGG - chr8_3:57024679-57024698 Msa1297100:CDS 30.0%
TTTCTTATCACAAGCATACA+AGG + chr8_3:57024848-57024867 None:intergenic 30.0%
GCTTAGGATGTATTAAATTG+CGG + chr8_3:57024874-57024893 None:intergenic 30.0%
! TTATTTTCCCCTCTTTACAA+TGG - chr8_3:57025103-57025122 Msa1297100:five_prime_UTR 30.0%
!!! CTGATTGCATTATGCTTTTT+TGG + chr8_3:57025134-57025153 None:intergenic 30.0%
ATTACTTTCAATGCAATGAC+GGG + chr8_3:57025283-57025302 None:intergenic 30.0%
TTTATATTCAGTTGGATGTG+TGG - chr8_3:57025420-57025439 Msa1297100:intron 30.0%
AGGGATATGATAGAACATTA+CGG - chr8_3:57025706-57025725 Msa1297100:intron 30.0%
GTAAACCTTTGTAATAGACA+TGG - chr8_3:57025816-57025835 Msa1297100:intron 30.0%
ATTGACCATGTCTATTACAA+AGG + chr8_3:57025824-57025843 None:intergenic 30.0%
TGGAAGTAATGAACAGAAAA+TGG - chr8_3:57025926-57025945 Msa1297100:intron 30.0%
GGTATGTGATAAGTTTATCA+TGG - chr8_3:57026094-57026113 Msa1297100:intron 30.0%
TAAGCATGTCAAGATTCTAA+TGG + chr8_3:57026516-57026535 None:intergenic 30.0%
CAAAATCTAATCAAGTAACG+GGG + chr8_3:57026556-57026575 None:intergenic 30.0%
! CAAGGGTAGAAAATTTTCAG+AGG - chr8_3:57021957-57021976 Msa1297100:three_prime_UTR 35.0%
!!! TGCCGTTTTGCAAATTCATT+CGG - chr8_3:57022044-57022063 Msa1297100:three_prime_UTR 35.0%
! TTCTTTGAGGGAAAACGAAA+GGG + chr8_3:57022163-57022182 None:intergenic 35.0%
! TTTCTTTGAGGGAAAACGAA+AGG + chr8_3:57022164-57022183 None:intergenic 35.0%
ATATGTGGAGTTGTTCTGTT+AGG - chr8_3:57022564-57022583 Msa1297100:CDS 35.0%
!!! TGTGTTTTCGAGTTGGTTTT+TGG - chr8_3:57022588-57022607 Msa1297100:CDS 35.0%
!!! TTTTCGAGTTGGTTTTTGGA+GGG - chr8_3:57022592-57022611 Msa1297100:CDS 35.0%
!!! GGTTTTTGGAGTGTTTTAGA+AGG + chr8_3:57022687-57022706 None:intergenic 35.0%
AAACACTCCAAAAACCAACT+CGG - chr8_3:57022691-57022710 Msa1297100:CDS 35.0%
!!! ATAACTACCGAGTTGGTTTT+TGG + chr8_3:57022701-57022720 None:intergenic 35.0%
AGCAGTAACTCTATTGTGAA+GGG - chr8_3:57022882-57022901 Msa1297100:CDS 35.0%
! TTACACAAGAGGTTGTTTCA+AGG + chr8_3:57023510-57023529 None:intergenic 35.0%
ACAACCTCTTGTGTAAAAAC+AGG - chr8_3:57023514-57023533 Msa1297100:intron 35.0%
CAACCTCTTGTGTAAAAACA+GGG - chr8_3:57023515-57023534 Msa1297100:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr8_3:57023521-57023540 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr8_3:57023520-57023539 Msa1297100:intron 35.0%
TGTAAAAAAAAAGGGCAACC+CGG + chr8_3:57023612-57023631 None:intergenic 35.0%
!!! TTTTTTACATCAGGTTGCAC+TGG - chr8_3:57023623-57023642 Msa1297100:intron 35.0%
! TTGAAGCGAATTTGGAACTA+AGG - chr8_3:57023737-57023756 Msa1297100:intron 35.0%
GTATGCTTTGTATTGTGAAC+AGG - chr8_3:57024216-57024235 Msa1297100:intron 35.0%
ATTGTGAACAGGATAAATGG+AGG - chr8_3:57024227-57024246 Msa1297100:intron 35.0%
!! TTGGTTATTGTCAGTTTTGG+GGG + chr8_3:57024320-57024339 None:intergenic 35.0%
ACGTTGAACTACTTTACTCA+AGG + chr8_3:57024347-57024366 None:intergenic 35.0%
GTTCCACTACAAATAGTTAG+GGG + chr8_3:57024430-57024449 None:intergenic 35.0%
TACACCCCTTATGAGTAATT+AGG - chr8_3:57024614-57024633 Msa1297100:CDS 35.0%
TCAAGATTAAGATGCAGCTT+AGG + chr8_3:57024890-57024909 None:intergenic 35.0%
GGGAGACAATAATGTATTAG+AGG - chr8_3:57024944-57024963 Msa1297100:CDS 35.0%
AGAGGCTATTGTCAATATGA+AGG - chr8_3:57024962-57024981 Msa1297100:CDS 35.0%
TACCTCTATGTAAGAAGCAA+TGG + chr8_3:57025012-57025031 None:intergenic 35.0%
TGTAAAGAGGGGAAAATAAC+AGG + chr8_3:57025102-57025121 None:intergenic 35.0%
TAAGATATGCAGCAAATGCA+TGG + chr8_3:57025170-57025189 None:intergenic 35.0%
! AAGCATTGTATTGCTAGTAG+TGG + chr8_3:57025248-57025267 None:intergenic 35.0%
TTACTTTCAATGCAATGACG+GGG + chr8_3:57025282-57025301 None:intergenic 35.0%
AGAGAGATATGGTAGAAACT+TGG - chr8_3:57025557-57025576 Msa1297100:intron 35.0%
ATATGGTAGAAACTTGGCTT+AGG - chr8_3:57025563-57025582 Msa1297100:intron 35.0%
AGTACAAGTAGATCAGATGA+AGG - chr8_3:57025624-57025643 Msa1297100:intron 35.0%
GTACAAGTAGATCAGATGAA+GGG - chr8_3:57025625-57025644 Msa1297100:intron 35.0%
AGATCTAGAGATCAATGAGT+TGG - chr8_3:57025681-57025700 Msa1297100:intron 35.0%
! TAGAGATCAATGAGTTGGAT+AGG - chr8_3:57025686-57025705 Msa1297100:intron 35.0%
! AGAGATCAATGAGTTGGATA+GGG - chr8_3:57025687-57025706 Msa1297100:intron 35.0%
!! AAGCTTTATTCCACTAAGTG+GGG + chr8_3:57025755-57025774 None:intergenic 35.0%
!! CAAGCTTTATTCCACTAAGT+GGG + chr8_3:57025756-57025775 None:intergenic 35.0%
!! ACAAGCTTTATTCCACTAAG+TGG + chr8_3:57025757-57025776 None:intergenic 35.0%
AATAGACATGGTCAATGATC+TGG - chr8_3:57025828-57025847 Msa1297100:intron 35.0%
CAAAATTATGCCAAGTTCAG+CGG - chr8_3:57026152-57026171 Msa1297100:intron 35.0%
!! CCTCAATTTGGGATTTTGAA+AGG + chr8_3:57026269-57026288 None:intergenic 35.0%
CCTTTCAAAATCCCAAATTG+AGG - chr8_3:57026266-57026285 Msa1297100:intron 35.0%
ATCACTTGCAGAAAAATCAG+TGG + chr8_3:57026591-57026610 None:intergenic 35.0%
!! GATTTTCGCTTGTTGATCAT+TGG - chr8_3:57026740-57026759 Msa1297100:intron 35.0%
CTACAAAAAGAATTGGCAGT+AGG + chr8_3:57026801-57026820 None:intergenic 35.0%
! TAACTTTCGGCTTGTAAATC+TGG - chr8_3:57026828-57026847 Msa1297100:intron 35.0%
! GCTTGTAAATCTGGAATATG+CGG - chr8_3:57026837-57026856 Msa1297100:intron 35.0%
TCGAACAAGCAATGTAAACA+TGG + chr8_3:57027062-57027081 None:intergenic 35.0%
! TTCTTAATGGGTGGGCTTAA+AGG - chr8_3:57022312-57022331 Msa1297100:intron 40.0%
! TCTTAATGGGTGGGCTTAAA+GGG - chr8_3:57022313-57022332 Msa1297100:intron 40.0%
GTAGAAATTTGAACACAGCC+TGG + chr8_3:57022454-57022473 None:intergenic 40.0%
!!! GTTAGGTTGTGTTTTCGAGT+TGG - chr8_3:57022581-57022600 Msa1297100:CDS 40.0%
!!! GTTTTCGAGTTGGTTTTTGG+AGG - chr8_3:57022591-57022610 Msa1297100:CDS 40.0%
!! TGGTTTTTGGAGGGTTTTGA+AGG - chr8_3:57022601-57022620 Msa1297100:CDS 40.0%
!!! GGTTTTTGGAGGGTTTTGAA+GGG - chr8_3:57022602-57022621 Msa1297100:CDS 40.0%
!!! GTTTTTGGAGGGTTTTGAAG+GGG - chr8_3:57022603-57022622 Msa1297100:CDS 40.0%
!!! TTGGAGTGTTTTAGAAGGGA+GGG + chr8_3:57022682-57022701 None:intergenic 40.0%
!!! TTTGGAGTGTTTTAGAAGGG+AGG + chr8_3:57022683-57022702 None:intergenic 40.0%
!! GTTAGTTAGTTGGTTCGTTG+AGG - chr8_3:57022779-57022798 Msa1297100:CDS 40.0%
TGGTTCGTTGAGGTTGTTAT+AGG - chr8_3:57022789-57022808 Msa1297100:CDS 40.0%
GAGCAGTAACTCTATTGTGA+AGG - chr8_3:57022881-57022900 Msa1297100:CDS 40.0%
GCAGTAACTCTATTGTGAAG+GGG - chr8_3:57022883-57022902 Msa1297100:CDS 40.0%
GAGATAATTCTCTCCTCCAA+GGG + chr8_3:57022912-57022931 None:intergenic 40.0%
!! TTTCTTTGGAATCCAGTGCT+TGG - chr8_3:57022967-57022986 Msa1297100:intron 40.0%
!! TTCTTTGGAATCCAGTGCTT+GGG - chr8_3:57022968-57022987 Msa1297100:intron 40.0%
! TCGTGTTGGTGCTTCATAAA+TGG + chr8_3:57023023-57023042 None:intergenic 40.0%
CCTTTGTGTTTGAACATAGC+CGG - chr8_3:57023161-57023180 Msa1297100:intron 40.0%
CCTTTGTGTTTGAACATAGC+CGG + chr8_3:57023161-57023180 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr8_3:57023546-57023565 Msa1297100:intron 40.0%
GGATGTGATTGAAGCGAATT+TGG - chr8_3:57023729-57023748 Msa1297100:intron 40.0%
TTGGAACTAAGGTCAATGTC+TGG - chr8_3:57023748-57023767 Msa1297100:intron 40.0%
TGGAACTAAGGTCAATGTCT+GGG - chr8_3:57023749-57023768 Msa1297100:intron 40.0%
TAATCTTTGCTTCTAGGTCG+AGG + chr8_3:57023913-57023932 None:intergenic 40.0%
AAAGCTGGAGTAGTCAAACA+CGG - chr8_3:57024014-57024033 Msa1297100:CDS 40.0%
AAAATGGCGCACAATACTCA+TGG - chr8_3:57024043-57024062 Msa1297100:CDS 40.0%
CTACTTTACTCAAGGCCAAT+TGG + chr8_3:57024339-57024358 None:intergenic 40.0%
ATTAAGCCCCTGACAATTTC+TGG - chr8_3:57024382-57024401 Msa1297100:intron 40.0%
TGTTCCACCAGAAATTGTCA+GGG + chr8_3:57024392-57024411 None:intergenic 40.0%
ATGTTCCACCAGAAATTGTC+AGG + chr8_3:57024393-57024412 None:intergenic 40.0%
CTACAAATAGTTAGGGGCTT+AGG + chr8_3:57024424-57024443 None:intergenic 40.0%
AAGCCCCTAACTATTTGTAG+TGG - chr8_3:57024424-57024443 Msa1297100:intron 40.0%
TACCTATAAGGAGTAAGGGA+AGG - chr8_3:57024683-57024702 Msa1297100:CDS 40.0%
TTCCTTCCCTTACTCCTTAT+AGG + chr8_3:57024688-57024707 None:intergenic 40.0%
AGACCTTGTTAACTGTGCAA+TGG - chr8_3:57024736-57024755 Msa1297100:CDS 40.0%
GAACCATTGCACAGTTAACA+AGG + chr8_3:57024742-57024761 None:intergenic 40.0%
GCCATTGCATGTCTTAATGA+TGG - chr8_3:57024915-57024934 Msa1297100:intron 40.0%
GCCATCATTAAGACATGCAA+TGG + chr8_3:57024919-57024938 None:intergenic 40.0%
TTGCATGTCTTAATGATGGC+AGG - chr8_3:57024919-57024938 Msa1297100:intron 40.0%
ATGTCTTAATGATGGCAGGT+TGG - chr8_3:57024923-57024942 Msa1297100:intron 40.0%
TGTCTTAATGATGGCAGGTT+GGG - chr8_3:57024924-57024943 Msa1297100:intron 40.0%
TGTCAATATGAAGGAGCCAA+AGG - chr8_3:57024971-57024990 Msa1297100:CDS 40.0%
GTCAATATGAAGGAGCCAAA+GGG - chr8_3:57024972-57024991 Msa1297100:CDS 40.0%
TGCCATTGCTTCTTACATAG+AGG - chr8_3:57025007-57025026 Msa1297100:CDS 40.0%
! CTTTTATGTGCAGTCTCACT+TGG - chr8_3:57025066-57025085 Msa1297100:exon 40.0%
AGTTACCTGTGATTTAGGCT+TGG - chr8_3:57025198-57025217 Msa1297100:intron 40.0%
AAACTTGGCTTAGGTGGTTT+GGG - chr8_3:57025572-57025591 Msa1297100:intron 40.0%
GCAATGACATATACGTTGAC+AGG - chr8_3:57026116-57026135 Msa1297100:intron 40.0%
! TGATAGCTCTGCCTCAATTT+GGG + chr8_3:57026280-57026299 None:intergenic 40.0%
! TTGATAGCTCTGCCTCAATT+TGG + chr8_3:57026281-57026300 None:intergenic 40.0%
TGATCAACAAGCGAAAATCC+AGG + chr8_3:57026739-57026758 None:intergenic 40.0%
ATGTCTTCCTTGGTACTTTG+TGG + chr8_3:57026955-57026974 None:intergenic 40.0%
CCAATCGAAATTGCAACTGA+AGG + chr8_3:57027030-57027049 None:intergenic 40.0%
CCTTCAGTTGCAATTTCGAT+TGG - chr8_3:57027027-57027046 Msa1297100:five_prime_UTR 40.0%
TGGGTGTGTACCTAATCACT+GGG + chr8_3:57022116-57022135 None:intergenic 45.0%
TTGGGTGTGTACCTAATCAC+TGG + chr8_3:57022117-57022136 None:intergenic 45.0%
CCAGTCACATGCATTCAAGT+GGG + chr8_3:57022243-57022262 None:intergenic 45.0%
ACCAGTCACATGCATTCAAG+TGG + chr8_3:57022244-57022263 None:intergenic 45.0%
CCAGCCCTTTGTGAAAACAA+AGG + chr8_3:57022476-57022495 None:intergenic 45.0%
!!! CCTTTGTTTTCACAAAGGGC+TGG - chr8_3:57022473-57022492 Msa1297100:intron 45.0%
!!! TGTTTTAGAAGGGAGGGGTT+TGG + chr8_3:57022676-57022695 None:intergenic 45.0%
!!! TGGAGTGTTTTAGAAGGGAG+GGG + chr8_3:57022681-57022700 None:intergenic 45.0%
TATTGTGAAGGGGAAACCCT+TGG - chr8_3:57022893-57022912 Msa1297100:intron 45.0%
GGAGATAATTCTCTCCTCCA+AGG + chr8_3:57022913-57022932 None:intergenic 45.0%
CATGTTAAGAACCCAAGCAC+TGG + chr8_3:57022982-57023001 None:intergenic 45.0%
CCGGCTATGTTCAAACACAA+AGG + chr8_3:57023410-57023429 None:intergenic 45.0%
CCGGCTATGTTCAAACACAA+AGG - chr8_3:57023410-57023429 Msa1297100:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG - chr8_3:57023470-57023489 Msa1297100:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr8_3:57023542-57023561 Msa1297100:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr8_3:57023545-57023564 Msa1297100:intron 45.0%
! TACATCAGGTTGCACTGGAT+TGG - chr8_3:57023628-57023647 Msa1297100:CDS 45.0%
! ACATCAGGTTGCACTGGATT+GGG - chr8_3:57023629-57023648 Msa1297100:CDS 45.0%
!! ACATTGGGTTGGGTTGTTAG+TGG - chr8_3:57023708-57023727 Msa1297100:intron 45.0%
TCTGCAGTCCATTTCTGCTT+AGG + chr8_3:57023978-57023997 None:intergenic 45.0%
! ATGGACTGCAGAAGAAGAAG+CGG - chr8_3:57023986-57024005 Msa1297100:intron 45.0%
AAGCTGGAGTAGTCAAACAC+GGG - chr8_3:57024015-57024034 Msa1297100:CDS 45.0%
CGCAAAATGGAACTGAACTC+AGG + chr8_3:57024071-57024090 None:intergenic 45.0%
ATTCGAACGCGTACGCAAAA+TGG + chr8_3:57024084-57024103 None:intergenic 45.0%
GCGTTCGAATGTAGATCTCA+AGG - chr8_3:57024094-57024113 Msa1297100:intron 45.0%
!!! TTATTGTCAGTTTTGGGGGC+TGG + chr8_3:57024316-57024335 None:intergenic 45.0%
GTTCCACCAGAAATTGTCAG+GGG + chr8_3:57024391-57024410 None:intergenic 45.0%
ATCTCCATGATTGTGGTGCT+TGG - chr8_3:57024541-57024560 Msa1297100:intron 45.0%
CAAACCAAGCACCACAATCA+TGG + chr8_3:57024548-57024567 None:intergenic 45.0%
! TGGGTGTGCCATTGTAAAGA+GGG + chr8_3:57025114-57025133 None:intergenic 45.0%
! TTGGGTGTGCCATTGTAAAG+AGG + chr8_3:57025115-57025134 None:intergenic 45.0%
ATGCTCCAAGCCTAAATCAC+AGG + chr8_3:57025206-57025225 None:intergenic 45.0%
GTCAGCAAAATTGCAGCAGA+TGG - chr8_3:57025369-57025388 Msa1297100:intron 45.0%
GACAAGTGGCAAAATAGTCC+AGG - chr8_3:57025393-57025412 Msa1297100:intron 45.0%
TTAGAGAGAGAGAGAGAGAG+AGG - chr8_3:57025477-57025496 Msa1297100:intron 45.0%
TAGAGAGAGAGAGAGAGAGA+GGG - chr8_3:57025478-57025497 Msa1297100:intron 45.0%
TGGTAGAAACTTGGCTTAGG+TGG - chr8_3:57025566-57025585 Msa1297100:intron 45.0%
GAAACTTGGCTTAGGTGGTT+TGG - chr8_3:57025571-57025590 Msa1297100:intron 45.0%
AAGCTCTTCTCTGATGCTTG+TGG - chr8_3:57026191-57026210 Msa1297100:intron 45.0%
AGGCAGAGCTATCAAAAGTG+AGG - chr8_3:57026286-57026305 Msa1297100:intron 45.0%
GGCAGAGCTATCAAAAGTGA+GGG - chr8_3:57026287-57026306 Msa1297100:intron 45.0%
GCAGAGCTATCAAAAGTGAG+GGG - chr8_3:57026288-57026307 Msa1297100:intron 45.0%
CAGAGCTATCAAAAGTGAGG+GGG - chr8_3:57026289-57026308 Msa1297100:intron 45.0%
CTTTGCAAAAGCAGCGATGA+AGG - chr8_3:57026440-57026459 Msa1297100:intron 45.0%
TCTAATGGAGTGACTGACTG+AGG + chr8_3:57026501-57026520 None:intergenic 45.0%
TGTGAATTGTGCAGATGTCC+TGG - chr8_3:57026718-57026737 Msa1297100:intron 45.0%
TTGTTGATCATTGGCCAAGC+TGG - chr8_3:57026749-57026768 Msa1297100:intron 45.0%
ACCATTATCTCAAGCCAGCT+TGG + chr8_3:57026766-57026785 None:intergenic 45.0%
GTACCAAGGAAGACATGCAA+TGG - chr8_3:57026959-57026978 Msa1297100:five_prime_UTR 45.0%
GTTCCATTGCATGTCTTCCT+TGG + chr8_3:57026965-57026984 None:intergenic 45.0%
GCAATTTCGATTGGCACATG+CGG - chr8_3:57027036-57027055 Msa1297100:five_prime_UTR 45.0%
CTCATCATCGCCCAGTGATT+AGG - chr8_3:57022103-57022122 Msa1297100:three_prime_UTR 50.0%
CCCACTTGAATGCATGTGAC+TGG - chr8_3:57022240-57022259 Msa1297100:three_prime_UTR 50.0%
!!! TTTGGAGGGTTTTGAAGGGG+AGG - chr8_3:57022606-57022625 Msa1297100:CDS 50.0%
!!! TTGGAGGGTTTTGAAGGGGA+GGG - chr8_3:57022607-57022626 Msa1297100:CDS 50.0%
TTAGAAGGGAGGGGTTTGGA+GGG + chr8_3:57022672-57022691 None:intergenic 50.0%
TTTAGAAGGGAGGGGTTTGG+AGG + chr8_3:57022673-57022692 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG - chr8_3:57023476-57023495 Msa1297100:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG - chr8_3:57023477-57023496 Msa1297100:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG + chr8_3:57023488-57023507 None:intergenic 50.0%
CTGAAACTCCCGCATATGCA+GGG + chr8_3:57023585-57023604 None:intergenic 50.0%
ACTGAAACTCCCGCATATGC+AGG + chr8_3:57023586-57023605 None:intergenic 50.0%
! AGGTTGCACTGGATTGGGTT+GGG - chr8_3:57023634-57023653 Msa1297100:CDS 50.0%
CTTCTAGGTCGAGGAAAGCT+TGG + chr8_3:57023904-57023923 None:intergenic 50.0%
AGCTGTCGGATTTCCTTCCA+TGG - chr8_3:57023947-57023966 Msa1297100:intron 50.0%
GCTGTCGGATTTCCTTCCAT+GGG - chr8_3:57023948-57023967 Msa1297100:intron 50.0%
!! TTTCTGCTTAGGAGCACCCA+TGG + chr8_3:57023967-57023986 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG - chr8_3:57023967-57023986 Msa1297100:intron 50.0%
AGCTGGAGTAGTCAAACACG+GGG - chr8_3:57024016-57024035 Msa1297100:CDS 50.0%
TCAAACACGGGGCTGGAAAA+TGG - chr8_3:57024027-57024046 Msa1297100:CDS 50.0%
TCACAGCAATATGGGGATCC+CGG - chr8_3:57024260-57024279 Msa1297100:intron 50.0%
! GGCAAGTTTTGCTTTCTGCC+GGG + chr8_3:57024281-57024300 None:intergenic 50.0%
! GGGCAAGTTTTGCTTTCTGC+CGG + chr8_3:57024282-57024301 None:intergenic 50.0%
! AAGCCCCTGACAATTTCTGG+TGG - chr8_3:57024385-57024404 Msa1297100:intron 50.0%
! GGGTGTGCCATTGTAAAGAG+GGG + chr8_3:57025113-57025132 None:intergenic 50.0%
TTGCAGCAGATGGTGACAAG+TGG - chr8_3:57025379-57025398 Msa1297100:intron 50.0%
GGGAGAGAGAGAGAGAGATA+TGG - chr8_3:57025546-57025565 Msa1297100:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr8_3:57025743-57025762 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr8_3:57025742-57025761 Msa1297100:intron 50.0%
TTCTCAGAGACCGCTGAACT+TGG + chr8_3:57026165-57026184 None:intergenic 50.0%
! TCAGCGGTCTCTGAGAAAAG+AGG - chr8_3:57026168-57026187 Msa1297100:intron 50.0%
AGCGAGGTCCAAAGATTCTC+CGG - chr8_3:57026215-57026234 Msa1297100:intron 50.0%
TCACACATCTTCTCCACCTC+CGG + chr8_3:57026237-57026256 None:intergenic 50.0%
AGCTGCAAAAGCAGTTGCAG+AGG - chr8_3:57026338-57026357 Msa1297100:intron 50.0%
GATTGCAGAAGCTGAAGCTG+AGG - chr8_3:57026407-57026426 Msa1297100:intron 50.0%
!! GCCAAGCTGGCTTGAGATAA+TGG - chr8_3:57026762-57026781 Msa1297100:intron 50.0%
! GGGAACACCACAAAGTACCA+AGG - chr8_3:57026945-57026964 Msa1297100:five_prime_UTR 50.0%
TGTGAAGGGGAAACCCTTGG+AGG - chr8_3:57022896-57022915 Msa1297100:intron 55.0%
TCGCTGCATCAGTGTCGTGT+TGG + chr8_3:57023037-57023056 None:intergenic 55.0%
CGACACTGATGCAGCGAAAC+CGG - chr8_3:57023040-57023059 Msa1297100:intron 55.0%
ATGCGGGAGTTTCAGTGCAC+CGG - chr8_3:57023590-57023609 Msa1297100:intron 55.0%
! CAGGTTGCACTGGATTGGGT+TGG - chr8_3:57023633-57023652 Msa1297100:CDS 55.0%
!! TGCACTGGATTGGGTTGGGT+TGG - chr8_3:57023638-57023657 Msa1297100:CDS 55.0%
!! GCACTGGATTGGGTTGGGTT+GGG - chr8_3:57023639-57023658 Msa1297100:CDS 55.0%
!! TGGATTGGGTTGGGTTGGGT+TGG - chr8_3:57023643-57023662 Msa1297100:CDS 55.0%
!! GGATTGGGTTGGGTTGGGTT+GGG - chr8_3:57023644-57023663 Msa1297100:CDS 55.0%
!! TGCTTAGGAGCACCCATGGA+AGG + chr8_3:57023963-57023982 None:intergenic 55.0%
! GAAGAAGCGGCGTTGAAAGC+TGG - chr8_3:57023999-57024018 Msa1297100:intron 55.0%
!!! TGTCAGTTTTGGGGGCTGGA+AGG + chr8_3:57024312-57024331 None:intergenic 55.0%
! GGAGCCAAAGGGTTCTGACA+AGG - chr8_3:57024983-57025002 Msa1297100:CDS 55.0%
! GCAGCCTTGTCAGAACCCTT+TGG + chr8_3:57024990-57025009 None:intergenic 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG - chr8_3:57025483-57025502 Msa1297100:intron 55.0%
GAGAGAGAGAGAGAGGGAGA+GGG - chr8_3:57025484-57025503 Msa1297100:intron 55.0%
CTCTGATGCTTGTGGAAGCG+AGG - chr8_3:57026199-57026218 Msa1297100:intron 55.0%
GAGGTCCAAAGATTCTCCGG+AGG - chr8_3:57026218-57026237 Msa1297100:intron 55.0%
GTCCAAAGATTCTCCGGAGG+TGG - chr8_3:57026221-57026240 Msa1297100:intron 55.0%
CTCCACCTCCGGAGAATCTT+TGG + chr8_3:57026226-57026245 None:intergenic 55.0%
GGCAGAAGTTGCCATTGCAC+AGG - chr8_3:57026359-57026378 Msa1297100:intron 55.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr8_3:57023558-57023577 Msa1297100:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr8_3:57023573-57023592 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr8_3:57023574-57023593 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr8_3:57023573-57023592 Msa1297100:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr8_3:57023574-57023593 Msa1297100:intron 60.0%
ACTCCCGCATATGCAGGGTC+CGG + chr8_3:57023580-57023599 None:intergenic 60.0%
TGCGGGAGTTTCAGTGCACC+GGG - chr8_3:57023591-57023610 Msa1297100:intron 60.0%
GGAGTAGTCAAACACGGGGC+TGG - chr8_3:57024020-57024039 Msa1297100:CDS 60.0%
GGGGGCTGGAAGGCTCTTAA+GGG + chr8_3:57024302-57024321 None:intergenic 60.0%
TGGGGGCTGGAAGGCTCTTA+AGG + chr8_3:57024303-57024322 None:intergenic 60.0%
AGAGAGAGAGGGAGAGGGAG+AGG - chr8_3:57025489-57025508 Msa1297100:intron 60.0%
GAGAGAGAGGGAGAGGGAGA+GGG - chr8_3:57025490-57025509 Msa1297100:intron 60.0%
GAGGGGGATGTCAGCTCAAG+AGG - chr8_3:57026305-57026324 Msa1297100:intron 60.0%
GGGGATGTCAGCTCAAGAGG+CGG - chr8_3:57026308-57026327 Msa1297100:intron 60.0%
! TGCTGCTTCGGCCTGTGCAA+TGG + chr8_3:57026373-57026392 None:intergenic 60.0%
ACAGGCCGAAGCAGCAGCTA+GGG - chr8_3:57026377-57026396 Msa1297100:intron 60.0%
! CGGTCAGCGAAGAGAAGCGC+CGG + chr8_3:57023391-57023410 None:intergenic 65.0%
! CGGTCAGCGAAGAGAAGCGC+CGG - chr8_3:57023391-57023410 Msa1297100:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr8_3:57023560-57023579 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG + chr8_3:57023575-57023594 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr8_3:57023579-57023598 None:intergenic 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr8_3:57025495-57025514 Msa1297100:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr8_3:57025496-57025515 Msa1297100:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr8_3:57025495-57025514 Msa1297100:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr8_3:57025496-57025515 Msa1297100:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr8_3:57025495-57025514 Msa1297100:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr8_3:57025496-57025515 Msa1297100:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr8_3:57025495-57025514 Msa1297100:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr8_3:57025496-57025515 Msa1297100:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr8_3:57025495-57025514 Msa1297100:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr8_3:57025496-57025515 Msa1297100:intron 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr8_3:57025495-57025514 Msa1297100:intron 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr8_3:57025496-57025515 Msa1297100:intron 65.0%
CACAGGCCGAAGCAGCAGCT+AGG - chr8_3:57026376-57026395 Msa1297100:intron 65.0%
! CGCCTCCCTAGCTGCTGCTT+CGG + chr8_3:57026385-57026404 None:intergenic 65.0%
CGAAGCAGCAGCTAGGGAGG+CGG - chr8_3:57026383-57026402 Msa1297100:intron 65.0%
GGCCGAAGCAGCAGCTAGGG+AGG - chr8_3:57026380-57026399 Msa1297100:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57021938 57027104 57021938 ID=Msa1297100;Name=Msa1297100
chr8_3 mRNA 57021938 57027104 57021938 ID=Msa1297100-mRNA-1;Parent=Msa1297100;Name=Msa1297100-mRNA-1;_AED=0.01;_eAED=0.01;_QI=272|1|1|1|0.66|0.42|7|381|308
chr8_3 exon 57021938 57022310 57021938 ID=Msa1297100-mRNA-1:exon:16377;Parent=Msa1297100-mRNA-1
chr8_3 exon 57022540 57022904 57022540 ID=Msa1297100-mRNA-1:exon:16376;Parent=Msa1297100-mRNA-1
chr8_3 exon 57023628 57023711 57023628 ID=Msa1297100-mRNA-1:exon:16375;Parent=Msa1297100-mRNA-1
chr8_3 exon 57024014 57024101 57024014 ID=Msa1297100-mRNA-1:exon:16374;Parent=Msa1297100-mRNA-1
chr8_3 exon 57024557 57024804 57024557 ID=Msa1297100-mRNA-1:exon:16373;Parent=Msa1297100-mRNA-1
chr8_3 exon 57024927 57025161 57024927 ID=Msa1297100-mRNA-1:exon:16372;Parent=Msa1297100-mRNA-1
chr8_3 exon 57026918 57027104 57026918 ID=Msa1297100-mRNA-1:exon:16371;Parent=Msa1297100-mRNA-1
chr8_3 five_prime_UTR 57026918 57027104 57026918 ID=Msa1297100-mRNA-1:five_prime_utr;Parent=Msa1297100-mRNA-1
chr8_3 five_prime_UTR 57025077 57025161 57025077 ID=Msa1297100-mRNA-1:five_prime_utr;Parent=Msa1297100-mRNA-1
chr8_3 CDS 57024927 57025076 57024927 ID=Msa1297100-mRNA-1:cds;Parent=Msa1297100-mRNA-1
chr8_3 CDS 57024557 57024804 57024557 ID=Msa1297100-mRNA-1:cds;Parent=Msa1297100-mRNA-1
chr8_3 CDS 57024014 57024101 57024014 ID=Msa1297100-mRNA-1:cds;Parent=Msa1297100-mRNA-1
chr8_3 CDS 57023628 57023711 57023628 ID=Msa1297100-mRNA-1:cds;Parent=Msa1297100-mRNA-1
chr8_3 CDS 57022548 57022904 57022548 ID=Msa1297100-mRNA-1:cds;Parent=Msa1297100-mRNA-1
chr8_3 three_prime_UTR 57022540 57022547 57022540 ID=Msa1297100-mRNA-1:three_prime_utr;Parent=Msa1297100-mRNA-1
chr8_3 three_prime_UTR 57021938 57022310 57021938 ID=Msa1297100-mRNA-1:three_prime_utr;Parent=Msa1297100-mRNA-1
Gene Sequence

>Msa1297100

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGTTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACAATACTCATGGATCCTGAGTTCAGTTCCATTTTGCGTACGCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCAAAACTTGCCCTTAAGAGCCTTCCAGCCCCCAAAACTGACAATAACCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACTTTCTCGATATTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGCCCCTAACTATTTGTAGTGGAACATTGCAATCTCCTAGTTCAAAAGAACAAGTATCAAGGTTGGGAGACAATAATGTATTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAAATTATGCCAAGTTCAGCGGTCTCTGAGAAAAGAGGAAGCTCTTCTCTGATGCTTGTGGAAGCGAGGTCCAAAGATTCTCCGGAGGTGGAGAAGATGTGTGATGTCAACATCCTTTCAAAATCCCAAATTGAGGCAGAGCTATCAAAAGTGAGGGGGATGTCAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCCGAAGCAGCAGCTAGGGAGGCGGAGATTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGATGAAGGCACTCAAATGCAAAATGCTTCATATTTGGTAG

Protein sequence

>Msa1297100

MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKSLPAPKTDNNQLALSKVVQREDFLDIKPLTISGGTLQSPKPLTICSGTLQSPSSKEQVSRLGDNNVLEAIVNMKEPKGSDKAAIASYIEEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVSEKRGSSSLMLVEARSKDSPEVEKMCDVNILSKSQIEAELSKVRGMSAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAMKALKCKMLHIW*