AlfalfaGEDB | Msa1328840

M. sativa cultivar zhongmu-4 / Msa1328840

KEGG: K09422
GO: GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328840	sp\|Q9FJW5\|TRB2_ARATH	50.000	310	142	4	1	308	1	299	8.46e-71	224

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328840	A0A072UNW9	98.382	309	4	1	1	308	1	309	0.0	608

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1328840	TF	MYB-related

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1206010	Msa1328840	0.955428	3.102526e-113	-8.615850e-47
Msa1297100	Msa1328840	0.852371	4.822138e-61	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328840	MtrunA17_Chr4g0054131	98.382	309	4	1	1	308	1	309	0.0	608
Msa1328840	MtrunA17_Chr5g0401061	65.806	310	88	6	1	308	1	294	3.66e-106	311
Msa1328840	MtrunA17_Chr2g0293381	45.276	254	120	6	1	250	1	239	4.04e-66	209
Msa1328840	MtrunA17_Chr8g0384671	44.531	256	117	6	1	250	1	237	8.24e-64	203
Msa1328840	MtrunA17_Chr1g0166681	69.048	84	25	1	1	84	1	83	7.92e-33	120
Msa1328840	MtrunA17_Chr8g0342871	36.071	280	153	8	1	280	1	254	8.34e-33	122
Msa1328840	MtrunA17_Chr2g0329921	37.500	216	114	5	1	201	1	210	2.38e-32	121
Msa1328840	MtrunA17_Chr8g0383821	48.305	118	57	3	1	114	1	118	3.00e-29	108
Msa1328840	MtrunA17_Chr1g0195261	70.000	50	15	0	1	50	1	50	6.12e-17	73.6
Msa1328840	MtrunA17_Chr1g0195251	37.097	124	68	5	136	256	296	412	2.36e-13	70.1

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328840	AT5G67580.2	50.000	310	142	4	1	308	1	299	8.60e-72	224
Msa1328840	AT5G67580.1	50.000	310	142	4	1	308	1	299	8.60e-72	224
Msa1328840	AT3G49850.1	47.386	306	143	6	1	304	1	290	4.37e-65	207
Msa1328840	AT3G49850.2	47.386	306	143	6	1	304	1	290	4.37e-65	207
Msa1328840	AT1G49950.3	43.191	257	124	8	1	252	1	240	5.89e-61	196
Msa1328840	AT1G49950.1	43.191	257	124	8	1	252	1	240	5.89e-61	196
Msa1328840	AT1G49950.2	43.191	257	124	8	1	252	1	240	5.89e-61	196
Msa1328840	AT1G72740.2	31.959	291	145	7	1	280	1	249	2.42e-30	116
Msa1328840	AT1G72740.1	31.773	299	141	9	1	280	1	255	3.89e-28	110
Msa1328840	AT1G17520.4	31.802	283	165	6	1	280	1	258	5.02e-28	110

Showing 1 to 10 of 13 entries

Previous1 2Next

Find 107 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCGCACAATACTCA+TGG	0.571706	8_4:+46858816	Msa1328840:CDS
AAAGCTGGAGTAGTCAAACA+CGG	0.681254	8_4:+46858787	Msa1328840:CDS
AAGCCCCTAACTATTTGTAG+TGG	0.611891	8_4:+46859197	Msa1328840:CDS
AAGCCCCTGACAATTTCTGG+TGG	0.637720	8_4:+46859158	Msa1328840:CDS
AAGCTCTTCTCTGATGCTTG+TGG	0.556765	8_4:+46861177	Msa1328840:CDS
AAGCTGGAGTAGTCAAACAC+GGG	0.628346	8_4:+46858788	Msa1328840:CDS
AATAACTTTCTAAGATTTGG+TGG	0.446528	8_4:-46860306	None:intergenic
AATGCAAAATGCTTCATATT+TGG	0.195627	8_4:+46861455	Msa1328840:CDS
ACAAAATGAAGATACACAAT+TGG	0.394358	8_4:+46856583	Msa1328840:five_prime_UTR
ACAGGCCGAAGCAGCAGCTA+GGG	0.483254	8_4:+46861363	Msa1328840:CDS

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TACATTCGGAATAAATGACA+AGG	+	chr8_4:46856529-46856548	Msa1328840:five_prime_UTR	30.0%
ACATTCGGAATAAATGACAA+GGG	+	chr8_4:46856530-46856549	Msa1328840:five_prime_UTR	30.0%
AATTTAAATAACCACCGAGT+TGG	-	chr8_4:46857288-46857307	None:intergenic	30.0%
TTATAGGGTTGTTAGTTAGT+TGG	+	chr8_4:46857540-46857559	Msa1328840:intron	30.0%
ATAAATAGGAGAACACAATG+CGG	+	chr8_4:46857592-46857611	Msa1328840:intron	30.0%
AGTAGTAACTCTATTGTGAA+GGG	+	chr8_4:46857653-46857672	Msa1328840:intron	30.0%
TTGAAAGTAACAACATGTGT+AGG	+	chr8_4:46857860-46857879	Msa1328840:intron	30.0%
ATTGAGATAATCTTCAGTCA+AGG	+	chr8_4:46858005-46858024	Msa1328840:intron	30.0%
TTGAGATAATCTTCAGTCAA+GGG	+	chr8_4:46858006-46858025	Msa1328840:intron	30.0%
GAAAACAATGTAATGCACAT+TGG	-	chr8_4:46858087-46858106	None:intergenic	30.0%

Showing 1 to 10 of 394 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	46856528	46862094	46856528	ID=Msa1328840;Name=Msa1328840
chr8_4	mRNA	46856528	46862094	46856528	ID=Msa1328840-mRNA-1;Parent=Msa1328840;Name=Msa1328840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=272\|1\|1\|1\|0.66\|0.42\|7\|382\|308
chr8_4	exon	46856528	46856714	46856528	ID=Msa1328840-mRNA-1:exon:13413;Parent=Msa1328840-mRNA-1
chr8_4	exon	46858654	46858888	46858654	ID=Msa1328840-mRNA-1:exon:13414;Parent=Msa1328840-mRNA-1
chr8_4	exon	46859011	46859258	46859011	ID=Msa1328840-mRNA-1:exon:13415;Parent=Msa1328840-mRNA-1
chr8_4	exon	46859901	46859988	46859901	ID=Msa1328840-mRNA-1:exon:13416;Parent=Msa1328840-mRNA-1
chr8_4	exon	46860291	46860374	46860291	ID=Msa1328840-mRNA-1:exon:13417;Parent=Msa1328840-mRNA-1
chr8_4	exon	46861124	46861488	46861124	ID=Msa1328840-mRNA-1:exon:13418;Parent=Msa1328840-mRNA-1
chr8_4	exon	46861721	46862094	46861721	ID=Msa1328840-mRNA-1:exon:13419;Parent=Msa1328840-mRNA-1
chr8_4	five_prime_UTR	46856528	46856714	46856528	ID=Msa1328840-mRNA-1:five_prime_utr;Parent=Msa1328840-mRNA-1
chr8_4	five_prime_UTR	46858654	46858738	46858654	ID=Msa1328840-mRNA-1:five_prime_utr;Parent=Msa1328840-mRNA-1
chr8_4	CDS	46858739	46858888	46858739	ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4	CDS	46859011	46859258	46859011	ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4	CDS	46859901	46859988	46859901	ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4	CDS	46860291	46860374	46860291	ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4	CDS	46861124	46861480	46861124	ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4	three_prime_UTR	46861481	46861488	46861481	ID=Msa1328840-mRNA-1:three_prime_utr;Parent=Msa1328840-mRNA-1
chr8_4	three_prime_UTR	46861721	46862094	46861721	ID=Msa1328840-mRNA-1:three_prime_utr;Parent=Msa1328840-mRNA-1

Gene Sequence

>Msa1328840

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGTTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACAATACTCATGGATCCTGAGTTCAGTTCCATTTTGCGTACGCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCAAAACTTGCCCTTAAGAGCCTTCCAGCCCCCAAAACTGACAATAACCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACTTTCTCGATATTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGCCCCTAACTATTTGTAGTGGAACATTGCAATCTCCTAGTTCAAAAGAACAAGTATCAAGGTTGGGAGACAATAATGTATTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAAATTATGCCAAGTTCAGCGGTCTCTGAGAAAAGAGGAAGCTCTTCTCTGATGCTTGTGGAAGCGAGGTCCAAAGATTCTCCGGAGGTGGAGAAGATGTGTGATGTCAACATCCTTTCAAAATCCCAAATTGAGGCAGAGCTATCAAAAGTGAGGGGGATGTCAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCCGAAGCAGCAGCTAGGGAGGCGGAGATTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGATGAAGGCACTCAAATGCAAAATGCTTCATATTTGGTAG

Protein sequence

>Msa1328840

MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKSLPAPKTDNNQLALSKVVQREDFLDIKPLTISGGTLQSPKPLTICSGTLQSPSSKEQVSRLGDNNVLEAIVNMKEPKGSDKAAIASYIEEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVSEKRGSSSLMLVEARSKDSPEVEKMCDVNILSKSQIEAELSKVRGMSAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAMKALKCKMLHIW*