AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1328840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328840 MtrunA17_Chr4g0054131 98.382 309 4 1 1 308 1 309 0.0 608
Msa1328840 MtrunA17_Chr5g0401061 65.806 310 88 6 1 308 1 294 3.66e-106 311
Msa1328840 MtrunA17_Chr2g0293381 45.276 254 120 6 1 250 1 239 4.04e-66 209
Msa1328840 MtrunA17_Chr8g0384671 44.531 256 117 6 1 250 1 237 8.24e-64 203
Msa1328840 MtrunA17_Chr1g0166681 69.048 84 25 1 1 84 1 83 7.92e-33 120
Msa1328840 MtrunA17_Chr8g0342871 36.071 280 153 8 1 280 1 254 8.34e-33 122
Msa1328840 MtrunA17_Chr2g0329921 37.500 216 114 5 1 201 1 210 2.38e-32 121
Msa1328840 MtrunA17_Chr8g0383821 48.305 118 57 3 1 114 1 118 3.00e-29 108
Msa1328840 MtrunA17_Chr1g0195261 70.000 50 15 0 1 50 1 50 6.12e-17 73.6
Msa1328840 MtrunA17_Chr1g0195251 37.097 124 68 5 136 256 296 412 2.36e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328840 AT5G67580.2 50.000 310 142 4 1 308 1 299 8.60e-72 224
Msa1328840 AT5G67580.1 50.000 310 142 4 1 308 1 299 8.60e-72 224
Msa1328840 AT3G49850.1 47.386 306 143 6 1 304 1 290 4.37e-65 207
Msa1328840 AT3G49850.2 47.386 306 143 6 1 304 1 290 4.37e-65 207
Msa1328840 AT1G49950.3 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1328840 AT1G49950.1 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1328840 AT1G49950.2 43.191 257 124 8 1 252 1 240 5.89e-61 196
Msa1328840 AT1G72740.2 31.959 291 145 7 1 280 1 249 2.42e-30 116
Msa1328840 AT1G72740.1 31.773 299 141 9 1 280 1 255 3.89e-28 110
Msa1328840 AT1G17520.4 31.802 283 165 6 1 280 1 258 5.02e-28 110
Msa1328840 AT1G17520.1 32.155 283 170 7 1 280 1 264 3.24e-27 108
Msa1328840 AT1G17520.3 32.042 284 164 7 1 280 1 259 1.10e-26 106
Msa1328840 AT1G17520.2 32.394 284 169 8 1 280 1 265 8.11e-26 104

Find 107 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCCCCTGACAATTTC+TGG 0.156688 8_4:+46859155 Msa1328840:CDS
AATGCAAAATGCTTCATATT+TGG 0.195627 8_4:+46861455 Msa1328840:CDS
TTGATAGCTCTGCCTCAATT+TGG 0.196523 8_4:-46861264 None:intergenic
CAATTGGTTATTGTCAGTTT+TGG 0.201241 8_4:-46859093 None:intergenic
AGAATTTAATCTTTGCTTCT+AGG 0.203601 8_4:-46858689 None:intergenic
ATTCGAACGCGTACGCAAAA+TGG 0.224697 8_4:-46858854 None:intergenic
GACAATAACTTTCTAAGATT+TGG 0.247003 8_4:-46860309 None:intergenic
TAACTTTCGGCTTGTAAATC+TGG 0.250955 8_4:+46861817 Msa1328840:three_prime_UTR
CTCCACCTCCGGAGAATCTT+TGG 0.268223 8_4:-46861209 None:intergenic
GCCAAGCTGGCTTGAGATAA+TGG 0.285939 8_4:+46861751 Msa1328840:three_prime_UTR
TGTATTGTGAACAGGATAAA+TGG 0.295045 8_4:+46858997 Msa1328840:intron
TGATAGCTCTGCCTCAATTT+GGG 0.303115 8_4:-46861263 None:intergenic
ATGTTCCACTACAAATAGTT+AGG 0.338025 8_4:-46859202 None:intergenic
TTGTAGATGTACATAACTTT+CGG 0.349440 8_4:+46861804 Msa1328840:three_prime_UTR
TCAAACACGGGGCTGGAAAA+TGG 0.376865 8_4:+46858800 Msa1328840:CDS
TCTGCAGTCCATTTCTGCTT+AGG 0.379164 8_4:-46858748 None:intergenic
CTACTTTACTCAAGGCCAAT+TGG 0.386042 8_4:-46859109 None:intergenic
ATATAAATGTCACAGCAATA+TGG 0.388272 8_4:+46859024 Msa1328840:CDS
CGCCTCCCTAGCTGCTGCTT+CGG 0.390489 8_4:-46861368 None:intergenic
ACAAAATGAAGATACACAAT+TGG 0.394358 8_4:+46856583 Msa1328840:five_prime_UTR
TTGGGTGTGTACCTAATCAC+TGG 0.410969 8_4:-46856704 None:intergenic
CTCATCATCGCCCAGTGATT+AGG 0.412971 8_4:+46856693 Msa1328840:five_prime_UTR
CTACAAATAGTTAGGGGCTT+AGG 0.415247 8_4:-46859194 None:intergenic
CAATTTGGATACATTACATT+CGG 0.418387 8_4:+46856515 None:intergenic
ATGTTCCACCAGAAATTGTC+AGG 0.418565 8_4:-46859163 None:intergenic
TTCTCAGAGACCGCTGAACT+TGG 0.424839 8_4:-46861148 None:intergenic
GAAGAAGCGGCGTTGAAAGC+TGG 0.427269 8_4:+46858772 Msa1328840:CDS
TGGGTGCTCCTAAGCAGAAA+TGG 0.427716 8_4:+46858740 Msa1328840:CDS
TGCTGCTTCGGCCTGTGCAA+TGG 0.434469 8_4:-46861356 None:intergenic
TATAAATGTCACAGCAATAT+GGG 0.435123 8_4:+46859025 Msa1328840:CDS
ATGTCTTCCTTGGTACTTTG+TGG 0.440390 8_4:-46861942 None:intergenic
CTTCTAGGTCGAGGAAAGCT+TGG 0.440974 8_4:-46858674 None:intergenic
GGGAGACAATAATGTATTAG+AGG 0.441902 8_4:+46859904 Msa1328840:CDS
AATAACTTTCTAAGATTTGG+TGG 0.446528 8_4:-46860306 None:intergenic
TTGTTGATCATTGGCCAAGC+TGG 0.446644 8_4:+46861738 Msa1328840:three_prime_UTR
GTTCCATTGCATGTCTTCCT+TGG 0.447588 8_4:-46861952 None:intergenic
CCTTCAATTGCAATTTCGAT+TGG 0.454843 8_4:+46862017 Msa1328840:three_prime_UTR
GCAGCCTTGTCAGAACCCTT+TGG 0.463786 8_4:-46859947 None:intergenic
CCAATCGAAATTGCAATTGA+AGG 0.468814 8_4:-46862017 None:intergenic
AGCTGCAAAAGCAGTTGCAG+AGG 0.469233 8_4:+46861324 Msa1328840:CDS
CGAAGCAGCAGCTAGGGAGG+CGG 0.477225 8_4:+46861369 Msa1328840:CDS
CAAAACTGACAATAACCAAT+TGG 0.479938 8_4:+46859094 Msa1328840:CDS
GGAGTAGTCAAACACGGGGC+TGG 0.481269 8_4:+46858793 Msa1328840:CDS
CTTTGCAAAAGCAGCGATGA+AGG 0.481859 8_4:+46861426 Msa1328840:CDS
GTCCAAAGATTCTCCGGAGG+TGG 0.481885 8_4:+46861207 Msa1328840:CDS
ACAGGCCGAAGCAGCAGCTA+GGG 0.483254 8_4:+46861363 Msa1328840:CDS
ACCATTATCTCAAGCCAGCT+TGG 0.485905 8_4:-46861752 None:intergenic
TAATCTTTGCTTCTAGGTCG+AGG 0.487452 8_4:-46858683 None:intergenic
GGCCGAAGCAGCAGCTAGGG+AGG 0.499766 8_4:+46861366 Msa1328840:CDS
TGTTCCACTACAAATAGTTA+GGG 0.500173 8_4:-46859201 None:intergenic
AGCGAGGTCCAAAGATTCTC+CGG 0.502665 8_4:+46861201 Msa1328840:CDS
AGCTGTCGGATTTCCTTCCA+TGG 0.503125 8_4:+46858720 Msa1328840:exon
ATCCAAATGAATTTGCAAAA+CGG 0.504475 8_4:-46856636 None:intergenic
TCACACATCTTCTCCACCTC+CGG 0.506821 8_4:-46861220 None:intergenic
CACAGGCCGAAGCAGCAGCT+AGG 0.511915 8_4:+46861362 Msa1328840:CDS
CAAAATGAAGATACACAATT+GGG 0.514762 8_4:+46856584 Msa1328840:five_prime_UTR
TGCCATTGCTTCTTACATAG+AGG 0.516855 8_4:+46859967 Msa1328840:CDS
GTCAATATGAAGGAGCCAAA+GGG 0.526790 8_4:+46859932 Msa1328840:CDS
GTTCAAAAGAACAAGTATCA+AGG 0.540828 8_4:+46859237 Msa1328840:CDS
CCTTTCAAAATCCCAAATTG+AGG 0.542802 8_4:+46861252 Msa1328840:CDS
TACCTCTATGTAAGAAGCAA+TGG 0.545469 8_4:-46859969 None:intergenic
TCACAGCAATATGGGGATCC+CGG 0.546612 8_4:+46859033 Msa1328840:CDS
GGCAGAAGTTGCCATTGCAC+AGG 0.551573 8_4:+46861345 Msa1328840:CDS
CGCAAAATGGAACTGAACTC+AGG 0.555443 8_4:-46858841 None:intergenic
AAGCTCTTCTCTGATGCTTG+TGG 0.556765 8_4:+46861177 Msa1328840:CDS
TTTCTGCTTAGGAGCACCCA+TGG 0.559262 8_4:-46858737 None:intergenic
AGAGGCTATTGTCAATATGA+AGG 0.562785 8_4:+46859922 Msa1328840:CDS
TGCTTAGGAGCACCCATGGA+AGG 0.563582 8_4:-46858733 None:intergenic
CTCTGATGCTTGTGGAAGCG+AGG 0.566860 8_4:+46861185 Msa1328840:CDS
TGTCAATATGAAGGAGCCAA+AGG 0.567981 8_4:+46859931 Msa1328840:CDS
GTCAGCAAAATTGCAGCAGA+TGG 0.568574 8_4:+46860329 Msa1328840:CDS
GCAATTTCGATTGGCACATG+CGG 0.568907 8_4:+46862026 Msa1328840:three_prime_UTR
GACAAGTGGCAAAATAGTCC+AGG 0.570447 8_4:+46860353 Msa1328840:CDS
AAAATGGCGCACAATACTCA+TGG 0.571706 8_4:+46858816 Msa1328840:CDS
TCAGCGGTCTCTGAGAAAAG+AGG 0.571845 8_4:+46861154 Msa1328840:CDS
ACGTTGAACTACTTTACTCA+AGG 0.573317 8_4:-46859117 None:intergenic
GGCAGAGCTATCAAAAGTGA+GGG 0.588740 8_4:+46861273 Msa1328840:CDS
GCTGTCGGATTTCCTTCCAT+GGG 0.598928 8_4:+46858721 Msa1328840:exon
CAAAATTATGCCAAGTTCAG+CGG 0.601681 8_4:+46861138 Msa1328840:CDS
AAGCCCCTAACTATTTGTAG+TGG 0.611891 8_4:+46859197 Msa1328840:CDS
TGTGAATTGTGCAGATGTCG+TGG 0.612030 8_4:+46861707 Msa1328840:intron
GCGTTCGAATGTAGATCTCA+AGG 0.619214 8_4:+46858867 Msa1328840:CDS
TGGGTGTGTACCTAATCACT+GGG 0.626177 8_4:-46856703 None:intergenic
TCGAACAAGCAATGTAAACA+TGG 0.626480 8_4:-46862049 None:intergenic
AAGCTGGAGTAGTCAAACAC+GGG 0.628346 8_4:+46858788 Msa1328840:CDS
AGGCAGAGCTATCAAAAGTG+AGG 0.628730 8_4:+46861272 Msa1328840:CDS
GATTGCAGAAGCTGAAGCTG+AGG 0.636628 8_4:+46861393 Msa1328840:CDS
GGGGATGTCAGCTCAAGAGG+CGG 0.637055 8_4:+46861294 Msa1328840:CDS
AAGCCCCTGACAATTTCTGG+TGG 0.637720 8_4:+46859158 Msa1328840:CDS
GGAGCCAAAGGGTTCTGACA+AGG 0.637821 8_4:+46859943 Msa1328840:CDS
GTACCAAGGAAGACATGCAA+TGG 0.638053 8_4:+46861949 Msa1328840:three_prime_UTR
TACATTCGGAATAAATGACA+AGG 0.642668 8_4:+46856529 Msa1328840:five_prime_UTR
GCTTGTAAATCTGGAATATG+CGG 0.648307 8_4:+46861826 Msa1328840:three_prime_UTR
TTGCAGCAGATGGTGACAAG+TGG 0.648634 8_4:+46860339 Msa1328840:CDS
ATAAATGTCACAGCAATATG+GGG 0.648999 8_4:+46859026 Msa1328840:CDS
TGTTCCACCAGAAATTGTCA+GGG 0.649357 8_4:-46859162 None:intergenic
ATGGACTGCAGAAGAAGAAG+CGG 0.652524 8_4:+46858759 Msa1328840:CDS
ATTGTGAACAGGATAAATGG+AGG 0.664041 8_4:+46859000 Msa1328840:intron
CAGAGCTATCAAAAGTGAGG+GGG 0.676061 8_4:+46861275 Msa1328840:CDS
AAAGCTGGAGTAGTCAAACA+CGG 0.681254 8_4:+46858787 Msa1328840:CDS
GTTCCACTACAAATAGTTAG+GGG 0.682877 8_4:-46859200 None:intergenic
GCAGAGCTATCAAAAGTGAG+GGG 0.684532 8_4:+46861274 Msa1328840:CDS
GTTCCACCAGAAATTGTCAG+GGG 0.692592 8_4:-46859161 None:intergenic
GGGAACGCCACAAAGTACCA+AGG 0.723403 8_4:+46861935 Msa1328840:three_prime_UTR
GAGGTCCAAAGATTCTCCGG+AGG 0.723417 8_4:+46861204 Msa1328840:CDS
AGCTGGAGTAGTCAAACACG+GGG 0.727088 8_4:+46858789 Msa1328840:CDS
ACATTCGGAATAAATGACAA+GGG 0.735959 8_4:+46856530 Msa1328840:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACTTAATTATATTTTGT+TGG + chr8_4:46858555-46858574 Msa1328840:intron 10.0%
!! TCAAAAAATTATAGAAGAAT+CGG - chr8_4:46856730-46856749 None:intergenic 15.0%
!!! AATGTTGTTTTTTTCTTAAT+GGG + chr8_4:46856890-46856909 Msa1328840:intron 15.0%
!! GATAAAAATTGCATTTAAAA+AGG - chr8_4:46856939-46856958 None:intergenic 15.0%
!! ATATTACAATGTTATAACTT+AGG + chr8_4:46857126-46857145 Msa1328840:intron 15.0%
!!! CACTTTTATTAAGAAAAAAT+AGG - chr8_4:46857715-46857734 None:intergenic 15.0%
!!! TTCATTTTAATGTTTATTGA+TGG + chr8_4:46858623-46858642 Msa1328840:intron 15.0%
!! TTTATTAATTGTTACCTATA+AGG + chr8_4:46859631-46859650 Msa1328840:intron 15.0%
!! AAAAAGTAAAATAAAAGCTA+TGG - chr8_4:46861884-46861903 None:intergenic 15.0%
!! AAAATTGAAACTTTCTTTGA+GGG - chr8_4:46856765-46856784 None:intergenic 20.0%
!! AAAAATTGAAACTTTCTTTG+AGG - chr8_4:46856766-46856785 None:intergenic 20.0%
!! CTTCTAACAAAACAAAAAAA+TGG - chr8_4:46856790-46856809 None:intergenic 20.0%
!!! CAATGTTGTTTTTTTCTTAA+TGG + chr8_4:46856889-46856908 Msa1328840:intron 20.0%
!! ATAGGACTATTTGTATAAAT+AGG + chr8_4:46857578-46857597 Msa1328840:intron 20.0%
!! AAGAAAAAATAGGAAAGAAT+AGG - chr8_4:46857705-46857724 None:intergenic 20.0%
!!! TAATAAAAGTGTTCTTTCTT+TGG + chr8_4:46857724-46857743 Msa1328840:intron 20.0%
!!! TCTATTTCTCAAATTATTAC+CGG - chr8_4:46857835-46857854 None:intergenic 20.0%
!! TCTATTCATTTGTGAAAATT+TGG - chr8_4:46859445-46859464 None:intergenic 20.0%
!! AAAAAATTCAGATTCAAACT+AGG - chr8_4:46859475-46859494 None:intergenic 20.0%
!! TAAGCATGTTGAAAATATAA+GGG + chr8_4:46859599-46859618 Msa1328840:intron 20.0%
!!! GTTTTTCTTATAGTTTTTCT+AGG - chr8_4:46860637-46860656 None:intergenic 20.0%
!! AATAAATTATTTGATCTTGC+TGG + chr8_4:46860891-46860910 Msa1328840:intron 20.0%
!! GTTGACAATGATAAATAAAT+TGG + chr8_4:46860933-46860952 Msa1328840:intron 20.0%
!! CAATTCAAATAAAACTATCA+CGG - chr8_4:46861030-46861049 None:intergenic 20.0%
!! ATCAAAATCTAATCAAGTAA+CGG - chr8_4:46861544-46861563 None:intergenic 20.0%
!!! ATTTTTAAAAGAAGACAATG+AGG + chr8_4:46861914-46861933 Msa1328840:three_prime_UTR 20.0%
!!! TTTTTAAAAGAAGACAATGA+GGG + chr8_4:46861915-46861934 Msa1328840:three_prime_UTR 20.0%
! ACAAAATGAAGATACACAAT+TGG + chr8_4:46856583-46856602 Msa1328840:five_prime_UTR 25.0%
! CAAAATGAAGATACACAATT+GGG + chr8_4:46856584-46856603 Msa1328840:five_prime_UTR 25.0%
! ATCCAAATGAATTTGCAAAA+CGG - chr8_4:46856639-46856658 None:intergenic 25.0%
! AAATTATAGAAGAATCGGTT+GGG - chr8_4:46856725-46856744 None:intergenic 25.0%
! AAAATTATAGAAGAATCGGT+TGG - chr8_4:46856726-46856745 None:intergenic 25.0%
! GCATCAAAATGCAAAATTTA+GGG - chr8_4:46857000-46857019 None:intergenic 25.0%
! TGCATCAAAATGCAAAATTT+AGG - chr8_4:46857001-46857020 None:intergenic 25.0%
! ATAACTTAGGTTAGAATATG+TGG + chr8_4:46857139-46857158 Msa1328840:intron 25.0%
!!! TATAGTCTTATAGAAGTTAG+TGG + chr8_4:46857330-46857349 Msa1328840:intron 25.0%
!!! ATAGTCTTATAGAAGTTAGT+GGG + chr8_4:46857331-46857350 Msa1328840:intron 25.0%
!!! GTAACTTAAGTGTATTTTAG+AGG + chr8_4:46857388-46857407 Msa1328840:intron 25.0%
!! TTTTGATGAGAGAGAATTAT+TGG + chr8_4:46857446-46857465 Msa1328840:intron 25.0%
! ATATATTACATGGTTACATC+AGG - chr8_4:46858207-46858226 None:intergenic 25.0%
! ACACAAAGGAATATATTACA+TGG - chr8_4:46858197-46858216 None:intergenic 25.0%
!! GTTATGAAAAGAATTTTCGT+CGG - chr8_4:46858144-46858163 None:intergenic 25.0%
!! GTTATGAAAAGAATTTTCGT+CGG + chr8_4:46858144-46858163 Msa1328840:intron 25.0%
! ACACAAAGGAATATATTACA+TGG + chr8_4:46858197-46858216 Msa1328840:intron 25.0%
! ATATATTACATGGTTACATC+AGG + chr8_4:46858207-46858226 Msa1328840:intron 25.0%
! CAACCTGATGTAAAAAAAAA+GGG - chr8_4:46858393-46858412 None:intergenic 25.0%
! GTGCTATATTGTTTAACATT+GGG + chr8_4:46858466-46858485 Msa1328840:intron 25.0%
! TATATTGTTTAACATTGGGT+TGG + chr8_4:46858470-46858489 Msa1328840:intron 25.0%
! ATATTGTTTAACATTGGGTT+GGG + chr8_4:46858471-46858490 Msa1328840:intron 25.0%
!! TATTGATGGTCATATAGAAA+AGG + chr8_4:46858637-46858656 Msa1328840:intron 25.0%
! AGAATTTAATCTTTGCTTCT+AGG - chr8_4:46858692-46858711 None:intergenic 25.0%
!! TATCTTTATGTATTTCTGCT+AGG - chr8_4:46858911-46858930 None:intergenic 25.0%
! ATATAAATGTCACAGCAATA+TGG + chr8_4:46859024-46859043 Msa1328840:CDS 25.0%
! TATAAATGTCACAGCAATAT+GGG + chr8_4:46859025-46859044 Msa1328840:CDS 25.0%
!! AATTGGTTATTGTCAGTTTT+GGG - chr8_4:46859095-46859114 None:intergenic 25.0%
! GTAAGCATGTTGAAAATATA+AGG + chr8_4:46859598-46859617 Msa1328840:intron 25.0%
! AAGCATGTTGAAAATATAAG+GGG + chr8_4:46859600-46859619 Msa1328840:intron 25.0%
! TGAAAATATAAGGGGAAAAA+AGG + chr8_4:46859608-46859627 Msa1328840:intron 25.0%
!!! TGATTGCATTATGCTTTTTT+GGG - chr8_4:46860093-46860112 None:intergenic 25.0%
! TTAAAAGTTACCTGTGATTT+AGG + chr8_4:46860153-46860172 Msa1328840:intron 25.0%
! AATTACTTTCAATGCAATGA+CGG - chr8_4:46860244-46860263 None:intergenic 25.0%
!! ACTTTTCATTTCATCTCTAT+AGG + chr8_4:46860269-46860288 Msa1328840:intron 25.0%
!!! AATAACTTTCTAAGATTTGG+TGG - chr8_4:46860309-46860328 None:intergenic 25.0%
!!! GACAATAACTTTCTAAGATT+TGG - chr8_4:46860312-46860331 None:intergenic 25.0%
! CAACTGAATATAAAATTACC+TGG - chr8_4:46860374-46860393 None:intergenic 25.0%
!! CAGGTAATTTTATATTCAGT+TGG + chr8_4:46860372-46860391 Msa1328840:intron 25.0%
! TAAAAAAGATGGTAGAAACT+TGG + chr8_4:46860515-46860534 Msa1328840:intron 25.0%
!! ATGAAACACTTTAGTCTTTA+AGG - chr8_4:46860853-46860872 None:intergenic 25.0%
!!! CCGAATTTTGTTTATTAGTT+GGG - chr8_4:46861062-46861081 None:intergenic 25.0%
! CCCAACTAATAAACAAAATT+CGG + chr8_4:46861059-46861078 Msa1328840:intron 25.0%
!!! ACCGAATTTTGTTTATTAGT+TGG - chr8_4:46861063-46861082 None:intergenic 25.0%
! AATGCAAAATGCTTCATATT+TGG + chr8_4:46861455-46861474 Msa1328840:CDS 25.0%
! TCAAAATCTAATCAAGTAAC+GGG - chr8_4:46861543-46861562 None:intergenic 25.0%
!!! TTGATTAGATTTTGATCTGT+AGG + chr8_4:46861548-46861567 Msa1328840:intron 25.0%
! TGTACATCTACAAAAAGAAT+TGG - chr8_4:46861797-46861816 None:intergenic 25.0%
! TTGTAGATGTACATAACTTT+CGG + chr8_4:46861804-46861823 Msa1328840:three_prime_UTR 25.0%
!! GATTCATGAAACATTTTATC+AGG + chr8_4:46861852-46861871 Msa1328840:three_prime_UTR 25.0%
TACATTCGGAATAAATGACA+AGG + chr8_4:46856529-46856548 Msa1328840:five_prime_UTR 30.0%
ACATTCGGAATAAATGACAA+GGG + chr8_4:46856530-46856549 Msa1328840:five_prime_UTR 30.0%
! GAAAATTTTCAGAGGAAAAG+TGG + chr8_4:46856555-46856574 Msa1328840:five_prime_UTR 30.0%
! GCATTATTGTAAGTTTTTCC+AGG + chr8_4:46857023-46857042 Msa1328840:intron 30.0%
!!! TTCTACCTTTGTTTTCACAA+AGG + chr8_4:46857058-46857077 Msa1328840:intron 30.0%
!!! TCTACCTTTGTTTTCACAAA+GGG + chr8_4:46857059-46857078 Msa1328840:intron 30.0%
AATTTAAATAACCACCGAGT+TGG - chr8_4:46857288-46857307 None:intergenic 30.0%
! AACTCGGTGGTTATTTAAAT+TGG + chr8_4:46857287-46857306 Msa1328840:intron 30.0%
! ATGAGAGAGAATTATTGGTT+AGG + chr8_4:46857451-46857470 Msa1328840:intron 30.0%
TTATAGGGTTGTTAGTTAGT+TGG + chr8_4:46857540-46857559 Msa1328840:intron 30.0%
ATAAATAGGAGAACACAATG+CGG + chr8_4:46857592-46857611 Msa1328840:intron 30.0%
AGTAGTAACTCTATTGTGAA+GGG + chr8_4:46857653-46857672 Msa1328840:intron 30.0%
TTGAAAGTAACAACATGTGT+AGG + chr8_4:46857860-46857879 Msa1328840:intron 30.0%
ATTGAGATAATCTTCAGTCA+AGG + chr8_4:46858005-46858024 Msa1328840:intron 30.0%
TTGAGATAATCTTCAGTCAA+GGG + chr8_4:46858006-46858025 Msa1328840:intron 30.0%
GAAAACAATGTAATGCACAT+TGG - chr8_4:46858087-46858106 None:intergenic 30.0%
GAAAACAATGTAATGCACAT+TGG + chr8_4:46858087-46858106 Msa1328840:intron 30.0%
TTGAGATAATCTTCAGTCAA+GGG - chr8_4:46858006-46858025 None:intergenic 30.0%
ATTGAGATAATCTTCAGTCA+AGG - chr8_4:46858005-46858024 None:intergenic 30.0%
!!! TTGCCCTTTTTTTTTACATC+AGG + chr8_4:46858387-46858406 Msa1328840:intron 30.0%
GCAACCTGATGTAAAAAAAA+AGG - chr8_4:46858394-46858413 None:intergenic 30.0%
! ATAGAAGTAATCTGAAGTGT+TGG + chr8_4:46858444-46858463 Msa1328840:intron 30.0%
! GGTGCTATATTGTTTAACAT+TGG + chr8_4:46858465-46858484 Msa1328840:intron 30.0%
! TTGAAGTGAATTTGGAACTA+AGG + chr8_4:46858510-46858529 Msa1328840:intron 30.0%
AATTCTCACAAAAAAGCTGT+CGG + chr8_4:46858706-46858725 Msa1328840:five_prime_UTR 30.0%
TGTATTGTGAACAGGATAAA+TGG + chr8_4:46858997-46859016 Msa1328840:intron 30.0%
ATAAATGTCACAGCAATATG+GGG + chr8_4:46859026-46859045 Msa1328840:CDS 30.0%
! ATTGGTTATTGTCAGTTTTG+GGG - chr8_4:46859094-46859113 None:intergenic 30.0%
! CAATTGGTTATTGTCAGTTT+TGG - chr8_4:46859096-46859115 None:intergenic 30.0%
CAAAACTGACAATAACCAAT+TGG + chr8_4:46859094-46859113 Msa1328840:CDS 30.0%
TGTTCCACTACAAATAGTTA+GGG - chr8_4:46859204-46859223 None:intergenic 30.0%
ATGTTCCACTACAAATAGTT+AGG - chr8_4:46859205-46859224 None:intergenic 30.0%
! GATACTTGTTCTTTTGAACT+AGG - chr8_4:46859236-46859255 None:intergenic 30.0%
GTTCAAAAGAACAAGTATCA+AGG + chr8_4:46859237-46859256 Msa1328840:CDS 30.0%
AGAAATTATCTCCATGATTG+TGG + chr8_4:46859307-46859326 Msa1328840:intron 30.0%
TAGACCTAATTACTCATAAG+GGG - chr8_4:46859394-46859413 None:intergenic 30.0%
CTAGACCTAATTACTCATAA+GGG - chr8_4:46859395-46859414 None:intergenic 30.0%
ACTAGACCTAATTACTCATA+AGG - chr8_4:46859396-46859415 None:intergenic 30.0%
!! ACAAAGGTGCTATAAAATGA+AGG - chr8_4:46859527-46859546 None:intergenic 30.0%
! TGAGGTACTACAAAAAATGA+AGG - chr8_4:46859565-46859584 None:intergenic 30.0%
ATTGTTACCTATAAGGAGTA+AGG + chr8_4:46859638-46859657 Msa1328840:intron 30.0%
TTGTTACCTATAAGGAGTAA+GGG + chr8_4:46859639-46859658 Msa1328840:intron 30.0%
TTTCTTATCACAAGCATACA+AGG - chr8_4:46859808-46859827 None:intergenic 30.0%
GCTTAGGATGTATTAAATTG+CGG - chr8_4:46859834-46859853 None:intergenic 30.0%
! TTATTTTCCCCTCTTTACAA+TGG + chr8_4:46860063-46860082 Msa1328840:intron 30.0%
!!! CTGATTGCATTATGCTTTTT+TGG - chr8_4:46860094-46860113 None:intergenic 30.0%
ATTACTTTCAATGCAATGAC+GGG - chr8_4:46860243-46860262 None:intergenic 30.0%
TTTATATTCAGTTGGATGTG+TGG + chr8_4:46860380-46860399 Msa1328840:intron 30.0%
!!! TCTACCATCTTTTTTACGAT+AGG - chr8_4:46860511-46860530 None:intergenic 30.0%
AGGGATATGATAGAACATTA+CGG + chr8_4:46860691-46860710 Msa1328840:intron 30.0%
GTAAACCTTTGTAATAGACA+TGG + chr8_4:46860801-46860820 Msa1328840:intron 30.0%
ATTGACCATGTCTATTACAA+AGG - chr8_4:46860809-46860828 None:intergenic 30.0%
TGGAAGTAATGAACAGAAAA+TGG + chr8_4:46860911-46860930 Msa1328840:intron 30.0%
GGTATGTGATAAGTTTATCA+TGG + chr8_4:46861080-46861099 Msa1328840:intron 30.0%
TAAGCATGTCAAGATTCTAA+TGG - chr8_4:46861502-46861521 None:intergenic 30.0%
CAAAATCTAATCAAGTAACG+GGG - chr8_4:46861542-46861561 None:intergenic 30.0%
! CAAGGGTAGAAAATTTTCAG+AGG + chr8_4:46856547-46856566 Msa1328840:five_prime_UTR 35.0%
!!! TGCCGTTTTGCAAATTCATT+TGG + chr8_4:46856634-46856653 Msa1328840:five_prime_UTR 35.0%
! TTCTTTGAGGGAAAACGAAA+GGG - chr8_4:46856753-46856772 None:intergenic 35.0%
! TTTCTTTGAGGGAAAACGAA+AGG - chr8_4:46856754-46856773 None:intergenic 35.0%
! TTCTTAATGGGTGAGCTTAA+AGG + chr8_4:46856902-46856921 Msa1328840:intron 35.0%
! TCTTAATGGGTGAGCTTAAA+GGG + chr8_4:46856903-46856922 Msa1328840:intron 35.0%
ATATGTGGAGTTGTTCTGTT+AGG + chr8_4:46857154-46857173 Msa1328840:intron 35.0%
! TCTTATAGAAGTTAGTGGGT+GGG + chr8_4:46857335-46857354 Msa1328840:intron 35.0%
! GTTAGTTAGTTGGTTAGTTG+AGG + chr8_4:46857550-46857569 Msa1328840:intron 35.0%
! TGGTTAGTTGAGGTTGTTAT+AGG + chr8_4:46857560-46857579 Msa1328840:intron 35.0%
GAGTAGTAACTCTATTGTGA+AGG + chr8_4:46857652-46857671 Msa1328840:intron 35.0%
GTAGTAACTCTATTGTGAAG+GGG + chr8_4:46857654-46857673 Msa1328840:intron 35.0%
ACAACCTCTTGTGTAAAAAC+AGG + chr8_4:46858287-46858306 Msa1328840:intron 35.0%
CAACCTCTTGTGTAAAAACA+GGG + chr8_4:46858288-46858307 Msa1328840:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - chr8_4:46858294-46858313 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + chr8_4:46858293-46858312 Msa1328840:intron 35.0%
TGTAAAAAAAAAGGGCAACC+CGG - chr8_4:46858385-46858404 None:intergenic 35.0%
!!! TTTTTTACATCAGGTTGCAC+TGG + chr8_4:46858396-46858415 Msa1328840:intron 35.0%
GGATGTGATTGAAGTGAATT+TGG + chr8_4:46858502-46858521 Msa1328840:intron 35.0%
GTATGCTTTGTATTGTGAAC+AGG + chr8_4:46858989-46859008 Msa1328840:intron 35.0%
ATTGTGAACAGGATAAATGG+AGG + chr8_4:46859000-46859019 Msa1328840:intron 35.0%
!! TTGGTTATTGTCAGTTTTGG+GGG - chr8_4:46859093-46859112 None:intergenic 35.0%
ACGTTGAACTACTTTACTCA+AGG - chr8_4:46859120-46859139 None:intergenic 35.0%
GTTCCACTACAAATAGTTAG+GGG - chr8_4:46859203-46859222 None:intergenic 35.0%
TACACCCCTTATGAGTAATT+AGG + chr8_4:46859387-46859406 Msa1328840:intron 35.0%
! CATTTTATAGCACCTTTGTG+AGG + chr8_4:46859528-46859547 Msa1328840:intron 35.0%
CTTACAGAAAAACTGCTATG+AGG - chr8_4:46859583-46859602 None:intergenic 35.0%
TCAAGATTAAGATGCAGCTT+AGG - chr8_4:46859850-46859869 None:intergenic 35.0%
GGGAGACAATAATGTATTAG+AGG + chr8_4:46859904-46859923 Msa1328840:CDS 35.0%
AGAGGCTATTGTCAATATGA+AGG + chr8_4:46859922-46859941 Msa1328840:CDS 35.0%
TACCTCTATGTAAGAAGCAA+TGG - chr8_4:46859972-46859991 None:intergenic 35.0%
TGTAAAGAGGGGAAAATAAC+AGG - chr8_4:46860062-46860081 None:intergenic 35.0%
TAAGATATGCAGCAAATGCA+TGG - chr8_4:46860130-46860149 None:intergenic 35.0%
! AAGCATTGTATTGCTAGTAG+TGG - chr8_4:46860208-46860227 None:intergenic 35.0%
TTACTTTCAATGCAATGACG+GGG - chr8_4:46860242-46860261 None:intergenic 35.0%
AGCACCTATCGTAAAAAAGA+TGG + chr8_4:46860504-46860523 Msa1328840:intron 35.0%
AGTACAAGTAGATCAGATGA+AGG + chr8_4:46860582-46860601 Msa1328840:intron 35.0%
GTACAAGTAGATCAGATGAA+GGG + chr8_4:46860583-46860602 Msa1328840:intron 35.0%
AGATCTAGAGATCAATGAGT+TGG + chr8_4:46860666-46860685 Msa1328840:intron 35.0%
! TAGAGATCAATGAGTTGGAT+AGG + chr8_4:46860671-46860690 Msa1328840:intron 35.0%
! AGAGATCAATGAGTTGGATA+GGG + chr8_4:46860672-46860691 Msa1328840:intron 35.0%
!! AAGCTTTATTCCACTAAGTG+GGG - chr8_4:46860740-46860759 None:intergenic 35.0%
!! CAAGCTTTATTCCACTAAGT+GGG - chr8_4:46860741-46860760 None:intergenic 35.0%
!! ACAAGCTTTATTCCACTAAG+TGG - chr8_4:46860742-46860761 None:intergenic 35.0%
AATAGACATGGTCAATGATC+TGG + chr8_4:46860813-46860832 Msa1328840:intron 35.0%
CAAAATTATGCCAAGTTCAG+CGG + chr8_4:46861138-46861157 Msa1328840:CDS 35.0%
!! CCTCAATTTGGGATTTTGAA+AGG - chr8_4:46861255-46861274 None:intergenic 35.0%
CCTTTCAAAATCCCAAATTG+AGG + chr8_4:46861252-46861271 Msa1328840:CDS 35.0%
ATCACTTGCAGAAAAATCAG+TGG - chr8_4:46861577-46861596 None:intergenic 35.0%
!! GATTTTCGCTTGTTGATCAT+TGG + chr8_4:46861729-46861748 Msa1328840:three_prime_UTR 35.0%
CTACAAAAAGAATTGGCAGT+AGG - chr8_4:46861790-46861809 None:intergenic 35.0%
! TAACTTTCGGCTTGTAAATC+TGG + chr8_4:46861817-46861836 Msa1328840:three_prime_UTR 35.0%
! GCTTGTAAATCTGGAATATG+CGG + chr8_4:46861826-46861845 Msa1328840:three_prime_UTR 35.0%
CCAATCGAAATTGCAATTGA+AGG - chr8_4:46862020-46862039 None:intergenic 35.0%
CCTTCAATTGCAATTTCGAT+TGG + chr8_4:46862017-46862036 Msa1328840:three_prime_UTR 35.0%
TCGAACAAGCAATGTAAACA+TGG - chr8_4:46862052-46862071 None:intergenic 35.0%
GTAGAAATTTGAACACAGCC+TGG - chr8_4:46857044-46857063 None:intergenic 40.0%
!!! TGTGTTTGCGAGTTGGTTTT+TGG + chr8_4:46857178-46857197 Msa1328840:intron 40.0%
!!! TTTGCGAGTTGGTTTTTGGA+GGG + chr8_4:46857182-46857201 Msa1328840:intron 40.0%
!! TGGTTTTTGGAGGGTTTTGA+AGG + chr8_4:46857191-46857210 Msa1328840:intron 40.0%
!!! GGTTTTTGGAGGGTTTTGAA+GGG + chr8_4:46857192-46857211 Msa1328840:intron 40.0%
!!! GTTTTTGGAGGGTTTTGAAG+GGG + chr8_4:46857193-46857212 Msa1328840:intron 40.0%
!!! ATAACCACCGAGTTGGTTTT+TGG - chr8_4:46857281-46857300 None:intergenic 40.0%
GTCTTATAGAAGTTAGTGGG+TGG + chr8_4:46857334-46857353 Msa1328840:intron 40.0%
! CTTATAGAAGTTAGTGGGTG+GGG + chr8_4:46857336-46857355 Msa1328840:intron 40.0%
TAGGAGAGAGATAGAGACAA+AGG + chr8_4:46857470-46857489 Msa1328840:intron 40.0%
TAGTCAGCTGGGATTGTTAT+AGG + chr8_4:46857524-46857543 Msa1328840:intron 40.0%
AGTCAGCTGGGATTGTTATA+GGG + chr8_4:46857525-46857544 Msa1328840:intron 40.0%
GAGATAATTCTCTCCTCCAA+GGG - chr8_4:46857683-46857702 None:intergenic 40.0%
! TCGTGTTGGTGCTTCATAAA+TGG - chr8_4:46857796-46857815 None:intergenic 40.0%
CCTTTGTGTTTGAACATAGC+CGG + chr8_4:46857934-46857953 Msa1328840:intron 40.0%
CCTTTGTGTTTGAACATAGC+CGG - chr8_4:46857934-46857953 None:intergenic 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr8_4:46858283-46858302 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG + chr8_4:46858319-46858338 Msa1328840:intron 40.0%
TTGGAACTAAGGTCAATGTC+TGG + chr8_4:46858521-46858540 Msa1328840:intron 40.0%
TGGAACTAAGGTCAATGTCT+GGG + chr8_4:46858522-46858541 Msa1328840:intron 40.0%
TAATCTTTGCTTCTAGGTCG+AGG - chr8_4:46858686-46858705 None:intergenic 40.0%
AAAGCTGGAGTAGTCAAACA+CGG + chr8_4:46858787-46858806 Msa1328840:CDS 40.0%
AAAATGGCGCACAATACTCA+TGG + chr8_4:46858816-46858835 Msa1328840:CDS 40.0%
CTACTTTACTCAAGGCCAAT+TGG - chr8_4:46859112-46859131 None:intergenic 40.0%
ATTAAGCCCCTGACAATTTC+TGG + chr8_4:46859155-46859174 Msa1328840:CDS 40.0%
TGTTCCACCAGAAATTGTCA+GGG - chr8_4:46859165-46859184 None:intergenic 40.0%
ATGTTCCACCAGAAATTGTC+AGG - chr8_4:46859166-46859185 None:intergenic 40.0%
CTACAAATAGTTAGGGGCTT+AGG - chr8_4:46859197-46859216 None:intergenic 40.0%
AAGCCCCTAACTATTTGTAG+TGG + chr8_4:46859197-46859216 Msa1328840:CDS 40.0%
TACCTATAAGGAGTAAGGGA+AGG + chr8_4:46859643-46859662 Msa1328840:intron 40.0%
TTCCTTCCCTTACTCCTTAT+AGG - chr8_4:46859648-46859667 None:intergenic 40.0%
AGACCTTGTTAACTGTGCAA+TGG + chr8_4:46859696-46859715 Msa1328840:intron 40.0%
GAACCATTGCACAGTTAACA+AGG - chr8_4:46859702-46859721 None:intergenic 40.0%
GCCATTGCATGTCTTAATGA+TGG + chr8_4:46859875-46859894 Msa1328840:intron 40.0%
GCCATCATTAAGACATGCAA+TGG - chr8_4:46859879-46859898 None:intergenic 40.0%
TTGCATGTCTTAATGATGGC+AGG + chr8_4:46859879-46859898 Msa1328840:intron 40.0%
ATGTCTTAATGATGGCAGGT+TGG + chr8_4:46859883-46859902 Msa1328840:intron 40.0%
TGTCTTAATGATGGCAGGTT+GGG + chr8_4:46859884-46859903 Msa1328840:intron 40.0%
TGTCAATATGAAGGAGCCAA+AGG + chr8_4:46859931-46859950 Msa1328840:CDS 40.0%
GTCAATATGAAGGAGCCAAA+GGG + chr8_4:46859932-46859951 Msa1328840:CDS 40.0%
TGCCATTGCTTCTTACATAG+AGG + chr8_4:46859967-46859986 Msa1328840:CDS 40.0%
! CTTTTATGTGCAGTCTCACT+TGG + chr8_4:46860026-46860045 Msa1328840:intron 40.0%
AGTTACCTGTGATTTAGGCT+TGG + chr8_4:46860158-46860177 Msa1328840:intron 40.0%
AGATGGTAGAAACTTGGCTT+AGG + chr8_4:46860521-46860540 Msa1328840:intron 40.0%
AAACTTGGCTTAGGTGGTTT+GGG + chr8_4:46860530-46860549 Msa1328840:intron 40.0%
AAGGGTTGTCAAATCACTAG+AGG + chr8_4:46860601-46860620 Msa1328840:intron 40.0%
GCAATGACATATACGTTGAC+AGG + chr8_4:46861102-46861121 Msa1328840:intron 40.0%
! TGATAGCTCTGCCTCAATTT+GGG - chr8_4:46861266-46861285 None:intergenic 40.0%
! TTGATAGCTCTGCCTCAATT+TGG - chr8_4:46861267-46861286 None:intergenic 40.0%
ATGTCTTCCTTGGTACTTTG+TGG - chr8_4:46861945-46861964 None:intergenic 40.0%
TGGGTGTGTACCTAATCACT+GGG - chr8_4:46856706-46856725 None:intergenic 45.0%
TTGGGTGTGTACCTAATCAC+TGG - chr8_4:46856707-46856726 None:intergenic 45.0%
CCAGTCACATGCATTCAAGT+GGG - chr8_4:46856833-46856852 None:intergenic 45.0%
ACCAGTCACATGCATTCAAG+TGG - chr8_4:46856834-46856853 None:intergenic 45.0%
CCAGCCCTTTGTGAAAACAA+AGG - chr8_4:46857066-46857085 None:intergenic 45.0%
!!! CCTTTGTTTTCACAAAGGGC+TGG + chr8_4:46857063-46857082 Msa1328840:intron 45.0%
! GTTAGGTTGTGTTTGCGAGT+TGG + chr8_4:46857171-46857190 Msa1328840:intron 45.0%
!!! GTTTGCGAGTTGGTTTTTGG+AGG + chr8_4:46857181-46857200 Msa1328840:intron 45.0%
!!! AGTTGGTTTTTGGAAGGGAG+GGG - chr8_4:46857271-46857290 None:intergenic 45.0%
!!! GAGTTGGTTTTTGGAAGGGA+GGG - chr8_4:46857272-46857291 None:intergenic 45.0%
CTCCCTTCCAAAAACCAACT+CGG + chr8_4:46857271-46857290 Msa1328840:intron 45.0%
!!! CACCGAGTTGGTTTTTGGAA+GGG - chr8_4:46857276-46857295 None:intergenic 45.0%
GGCTTCAGTGACTTTGTGTT+GGG + chr8_4:46857357-46857376 Msa1328840:intron 45.0%
GACTTTGTGTTGGGTGACTT+TGG + chr8_4:46857366-46857385 Msa1328840:intron 45.0%
!! ATAGAGACAAAGGCACCGAA+AGG + chr8_4:46857480-46857499 Msa1328840:intron 45.0%
AATCCCAGCTGACTAACTTC+GGG - chr8_4:46857519-46857538 None:intergenic 45.0%
CAATCCCAGCTGACTAACTT+CGG - chr8_4:46857520-46857539 None:intergenic 45.0%
TATTGTGAAGGGGAAACCCT+TGG + chr8_4:46857664-46857683 Msa1328840:intron 45.0%
GGAGATAATTCTCTCCTCCA+AGG - chr8_4:46857684-46857703 None:intergenic 45.0%
!! TCTTTGGAATCCAGTGTGCT+TGG + chr8_4:46857740-46857759 Msa1328840:intron 45.0%
!! CTTTGGAATCCAGTGTGCTT+GGG + chr8_4:46857741-46857760 Msa1328840:intron 45.0%
TGTTAAGAACCCAAGCACAC+TGG - chr8_4:46857753-46857772 None:intergenic 45.0%
CCGGCTATGTTCAAACACAA+AGG - chr8_4:46858183-46858202 None:intergenic 45.0%
CCGGCTATGTTCAAACACAA+AGG + chr8_4:46858183-46858202 Msa1328840:intron 45.0%
GTTGTTGTCATGTGACCGTA+AGG + chr8_4:46858243-46858262 Msa1328840:intron 45.0%
GCTGCGTACAATACACCAAA+TGG + chr8_4:46858315-46858334 Msa1328840:intron 45.0%
GCGTACAATACACCAAATGG+TGG + chr8_4:46858318-46858337 Msa1328840:intron 45.0%
! TACATCAGGTTGCACTGGAT+TGG + chr8_4:46858401-46858420 Msa1328840:intron 45.0%
! ACATCAGGTTGCACTGGATT+GGG + chr8_4:46858402-46858421 Msa1328840:intron 45.0%
!! ACATTGGGTTGGGTTGTTAG+TGG + chr8_4:46858481-46858500 Msa1328840:intron 45.0%
TCTGCAGTCCATTTCTGCTT+AGG - chr8_4:46858751-46858770 None:intergenic 45.0%
! ATGGACTGCAGAAGAAGAAG+CGG + chr8_4:46858759-46858778 Msa1328840:CDS 45.0%
AAGCTGGAGTAGTCAAACAC+GGG + chr8_4:46858788-46858807 Msa1328840:CDS 45.0%
CGCAAAATGGAACTGAACTC+AGG - chr8_4:46858844-46858863 None:intergenic 45.0%
ATTCGAACGCGTACGCAAAA+TGG - chr8_4:46858857-46858876 None:intergenic 45.0%
GCGTTCGAATGTAGATCTCA+AGG + chr8_4:46858867-46858886 Msa1328840:CDS 45.0%
!!! TTATTGTCAGTTTTGGGGGC+TGG - chr8_4:46859089-46859108 None:intergenic 45.0%
GTTCCACCAGAAATTGTCAG+GGG - chr8_4:46859164-46859183 None:intergenic 45.0%
ATCTCCATGATTGTGGTGCT+TGG + chr8_4:46859314-46859333 Msa1328840:intron 45.0%
CAAACCAAGCACCACAATCA+TGG - chr8_4:46859321-46859340 None:intergenic 45.0%
! TAGCACCTTTGTGAGGTATC+TGG + chr8_4:46859535-46859554 Msa1328840:intron 45.0%
! TGGGTGTGCCATTGTAAAGA+GGG - chr8_4:46860074-46860093 None:intergenic 45.0%
! TTGGGTGTGCCATTGTAAAG+AGG - chr8_4:46860075-46860094 None:intergenic 45.0%
ATGCTCCAAGCCTAAATCAC+AGG - chr8_4:46860166-46860185 None:intergenic 45.0%
GTCAGCAAAATTGCAGCAGA+TGG + chr8_4:46860329-46860348 Msa1328840:CDS 45.0%
GACAAGTGGCAAAATAGTCC+AGG + chr8_4:46860353-46860372 Msa1328840:CDS 45.0%
GAGAGAGAGAGAGAGAGAAT+CGG + chr8_4:46860478-46860497 Msa1328840:intron 45.0%
AGAGAGAGAGAGAGAGAATC+GGG + chr8_4:46860479-46860498 Msa1328840:intron 45.0%
TGGTAGAAACTTGGCTTAGG+TGG + chr8_4:46860524-46860543 Msa1328840:intron 45.0%
GAAACTTGGCTTAGGTGGTT+TGG + chr8_4:46860529-46860548 Msa1328840:intron 45.0%
AAGCTCTTCTCTGATGCTTG+TGG + chr8_4:46861177-46861196 Msa1328840:CDS 45.0%
AGGCAGAGCTATCAAAAGTG+AGG + chr8_4:46861272-46861291 Msa1328840:CDS 45.0%
GGCAGAGCTATCAAAAGTGA+GGG + chr8_4:46861273-46861292 Msa1328840:CDS 45.0%
GCAGAGCTATCAAAAGTGAG+GGG + chr8_4:46861274-46861293 Msa1328840:CDS 45.0%
CAGAGCTATCAAAAGTGAGG+GGG + chr8_4:46861275-46861294 Msa1328840:CDS 45.0%
CTTTGCAAAAGCAGCGATGA+AGG + chr8_4:46861426-46861445 Msa1328840:CDS 45.0%
TCTAATGGAGTGACTGACTG+AGG - chr8_4:46861487-46861506 None:intergenic 45.0%
TGTGAATTGTGCAGATGTCG+TGG + chr8_4:46861707-46861726 Msa1328840:intron 45.0%
TTGTTGATCATTGGCCAAGC+TGG + chr8_4:46861738-46861757 Msa1328840:three_prime_UTR 45.0%
ACCATTATCTCAAGCCAGCT+TGG - chr8_4:46861755-46861774 None:intergenic 45.0%
GTACCAAGGAAGACATGCAA+TGG + chr8_4:46861949-46861968 Msa1328840:three_prime_UTR 45.0%
GTTCCATTGCATGTCTTCCT+TGG - chr8_4:46861955-46861974 None:intergenic 45.0%
GCAATTTCGATTGGCACATG+CGG + chr8_4:46862026-46862045 Msa1328840:three_prime_UTR 45.0%
!!! TTCTTTTAAAAATAATAAAA+AGG - chr8_4:46861907-46861926 None:intergenic 5.0%
CTCATCATCGCCCAGTGATT+AGG + chr8_4:46856693-46856712 Msa1328840:five_prime_UTR 50.0%
CCCACTTGAATGCATGTGAC+TGG + chr8_4:46856830-46856849 Msa1328840:intron 50.0%
!!! TTTGGAGGGTTTTGAAGGGG+AGG + chr8_4:46857196-46857215 Msa1328840:intron 50.0%
!!! TTGGAGGGTTTTGAAGGGGA+GGG + chr8_4:46857197-46857216 Msa1328840:intron 50.0%
!! GTTTTTGGAAGGGAGGGGAT+TGG - chr8_4:46857266-46857285 None:intergenic 50.0%
!!! CGAGTTGGTTTTTGGAAGGG+AGG - chr8_4:46857273-46857292 None:intergenic 50.0%
!!! CCACCGAGTTGGTTTTTGGA+AGG - chr8_4:46857277-46857296 None:intergenic 50.0%
CCTTCCAAAAACCAACTCGG+TGG + chr8_4:46857274-46857293 Msa1328840:intron 50.0%
GGGCTTCAGTGACTTTGTGT+TGG + chr8_4:46857356-46857375 Msa1328840:intron 50.0%
ACTAACTTCGGGCTTGGCTT+CGG - chr8_4:46857508-46857527 None:intergenic 50.0%
AAGCCCGAAGTTAGTCAGCT+GGG + chr8_4:46857513-46857532 Msa1328840:intron 50.0%
GTCATGTGACCGTAAGGTCA+CGG + chr8_4:46858249-46858268 Msa1328840:intron 50.0%
TCATGTGACCGTAAGGTCAC+GGG + chr8_4:46858250-46858269 Msa1328840:intron 50.0%
GACTTGAACCCGTGACCTTA+CGG - chr8_4:46858261-46858280 None:intergenic 50.0%
CTGAAACTCCCGCATATGCA+GGG - chr8_4:46858358-46858377 None:intergenic 50.0%
ACTGAAACTCCCGCATATGC+AGG - chr8_4:46858359-46858378 None:intergenic 50.0%
! AGGTTGCACTGGATTGGGTT+GGG + chr8_4:46858407-46858426 Msa1328840:intron 50.0%
CTTCTAGGTCGAGGAAAGCT+TGG - chr8_4:46858677-46858696 None:intergenic 50.0%
AGCTGTCGGATTTCCTTCCA+TGG + chr8_4:46858720-46858739 Msa1328840:exon 50.0%
GCTGTCGGATTTCCTTCCAT+GGG + chr8_4:46858721-46858740 Msa1328840:exon 50.0%
!! TTTCTGCTTAGGAGCACCCA+TGG - chr8_4:46858740-46858759 None:intergenic 50.0%
TGGGTGCTCCTAAGCAGAAA+TGG + chr8_4:46858740-46858759 Msa1328840:CDS 50.0%
AGCTGGAGTAGTCAAACACG+GGG + chr8_4:46858789-46858808 Msa1328840:CDS 50.0%
TCAAACACGGGGCTGGAAAA+TGG + chr8_4:46858800-46858819 Msa1328840:CDS 50.0%
TCACAGCAATATGGGGATCC+CGG + chr8_4:46859033-46859052 Msa1328840:CDS 50.0%
! GGCAAGTTTTGCTTTCTGCC+GGG - chr8_4:46859054-46859073 None:intergenic 50.0%
! GGGCAAGTTTTGCTTTCTGC+CGG - chr8_4:46859055-46859074 None:intergenic 50.0%
! AAGCCCCTGACAATTTCTGG+TGG + chr8_4:46859158-46859177 Msa1328840:CDS 50.0%
GATCGCCAGATACCTCACAA+AGG - chr8_4:46859543-46859562 None:intergenic 50.0%
! GGGTGTGCCATTGTAAAGAG+GGG - chr8_4:46860073-46860092 None:intergenic 50.0%
TTGCAGCAGATGGTGACAAG+TGG + chr8_4:46860339-46860358 Msa1328840:CDS 50.0%
GAGAGAGAGAGAGAGAATCG+GGG + chr8_4:46860480-46860499 Msa1328840:intron 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - chr8_4:46860728-46860747 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + chr8_4:46860727-46860746 Msa1328840:intron 50.0%
TTCTCAGAGACCGCTGAACT+TGG - chr8_4:46861151-46861170 None:intergenic 50.0%
! TCAGCGGTCTCTGAGAAAAG+AGG + chr8_4:46861154-46861173 Msa1328840:CDS 50.0%
AGCGAGGTCCAAAGATTCTC+CGG + chr8_4:46861201-46861220 Msa1328840:CDS 50.0%
TCACACATCTTCTCCACCTC+CGG - chr8_4:46861223-46861242 None:intergenic 50.0%
AGCTGCAAAAGCAGTTGCAG+AGG + chr8_4:46861324-46861343 Msa1328840:CDS 50.0%
GATTGCAGAAGCTGAAGCTG+AGG + chr8_4:46861393-46861412 Msa1328840:CDS 50.0%
!! GCCAAGCTGGCTTGAGATAA+TGG + chr8_4:46861751-46861770 Msa1328840:three_prime_UTR 50.0%
TTGGAAGGGAGGGGATTGGA+GGG - chr8_4:46857262-46857281 None:intergenic 55.0%
TTTGGAAGGGAGGGGATTGG+AGG - chr8_4:46857263-46857282 None:intergenic 55.0%
CAGCTGACTAACTTCGGGCT+TGG - chr8_4:46857514-46857533 None:intergenic 55.0%
CAAGCCCGAAGTTAGTCAGC+TGG + chr8_4:46857512-46857531 Msa1328840:intron 55.0%
TGTGAAGGGGAAACCCTTGG+AGG + chr8_4:46857667-46857686 Msa1328840:intron 55.0%
GCACCAACACGACACTGATG+CGG + chr8_4:46857804-46857823 Msa1328840:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + chr8_4:46858262-46858281 Msa1328840:intron 55.0%
ATGCGGGAGTTTCAGTGCAC+CGG + chr8_4:46858363-46858382 Msa1328840:intron 55.0%
! CAGGTTGCACTGGATTGGGT+TGG + chr8_4:46858406-46858425 Msa1328840:intron 55.0%
!! TGCACTGGATTGGGTTGGGT+TGG + chr8_4:46858411-46858430 Msa1328840:intron 55.0%
!! GCACTGGATTGGGTTGGGTT+GGG + chr8_4:46858412-46858431 Msa1328840:intron 55.0%
!! TGGATTGGGTTGGGTTGGGT+TGG + chr8_4:46858416-46858435 Msa1328840:intron 55.0%
!! GGATTGGGTTGGGTTGGGTT+GGG + chr8_4:46858417-46858436 Msa1328840:intron 55.0%
!! TGCTTAGGAGCACCCATGGA+AGG - chr8_4:46858736-46858755 None:intergenic 55.0%
! GAAGAAGCGGCGTTGAAAGC+TGG + chr8_4:46858772-46858791 Msa1328840:CDS 55.0%
!!! TGTCAGTTTTGGGGGCTGGA+AGG - chr8_4:46859085-46859104 None:intergenic 55.0%
! GGAGCCAAAGGGTTCTGACA+AGG + chr8_4:46859943-46859962 Msa1328840:CDS 55.0%
! GCAGCCTTGTCAGAACCCTT+TGG - chr8_4:46859950-46859969 None:intergenic 55.0%
CTCTGATGCTTGTGGAAGCG+AGG + chr8_4:46861185-46861204 Msa1328840:CDS 55.0%
GAGGTCCAAAGATTCTCCGG+AGG + chr8_4:46861204-46861223 Msa1328840:CDS 55.0%
GTCCAAAGATTCTCCGGAGG+TGG + chr8_4:46861207-46861226 Msa1328840:CDS 55.0%
CTCCACCTCCGGAGAATCTT+TGG - chr8_4:46861212-46861231 None:intergenic 55.0%
GGCAGAAGTTGCCATTGCAC+AGG + chr8_4:46861345-46861364 Msa1328840:CDS 55.0%
! GGGAACGCCACAAAGTACCA+AGG + chr8_4:46861935-46861954 Msa1328840:three_prime_UTR 55.0%
!! GGCTTGGCTTCGGTGCCTTT+CGG - chr8_4:46857498-46857517 None:intergenic 60.0%
TCGCCGCATCAGTGTCGTGT+TGG - chr8_4:46857810-46857829 None:intergenic 60.0%
CGACACTGATGCGGCGAAAC+CGG + chr8_4:46857813-46857832 Msa1328840:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr8_4:46858331-46858350 Msa1328840:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr8_4:46858346-46858365 None:intergenic 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr8_4:46858347-46858366 None:intergenic 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr8_4:46858346-46858365 Msa1328840:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr8_4:46858347-46858366 Msa1328840:intron 60.0%
ACTCCCGCATATGCAGGGTC+CGG - chr8_4:46858353-46858372 None:intergenic 60.0%
TGCGGGAGTTTCAGTGCACC+GGG + chr8_4:46858364-46858383 Msa1328840:intron 60.0%
GGAGTAGTCAAACACGGGGC+TGG + chr8_4:46858793-46858812 Msa1328840:CDS 60.0%
GGGGGCTGGAAGGCTCTTAA+GGG - chr8_4:46859075-46859094 None:intergenic 60.0%
TGGGGGCTGGAAGGCTCTTA+AGG - chr8_4:46859076-46859095 None:intergenic 60.0%
GAGGGGGATGTCAGCTCAAG+AGG + chr8_4:46861291-46861310 Msa1328840:CDS 60.0%
GGGGATGTCAGCTCAAGAGG+CGG + chr8_4:46861294-46861313 Msa1328840:CDS 60.0%
! TGCTGCTTCGGCCTGTGCAA+TGG - chr8_4:46861359-46861378 None:intergenic 60.0%
ACAGGCCGAAGCAGCAGCTA+GGG + chr8_4:46861363-46861382 Msa1328840:CDS 60.0%
! CGGTCAGCGAAGAGAAGCGC+CGG - chr8_4:46858164-46858183 None:intergenic 65.0%
! CGGTCAGCGAAGAGAAGCGC+CGG + chr8_4:46858164-46858183 Msa1328840:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr8_4:46858333-46858352 None:intergenic 65.0%
CGCATATGCAGGGTCCGGGA+AGG - chr8_4:46858348-46858367 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr8_4:46858352-46858371 None:intergenic 65.0%
CACAGGCCGAAGCAGCAGCT+AGG + chr8_4:46861362-46861381 Msa1328840:CDS 65.0%
! CGCCTCCCTAGCTGCTGCTT+CGG - chr8_4:46861371-46861390 None:intergenic 65.0%
CGAAGCAGCAGCTAGGGAGG+CGG + chr8_4:46861369-46861388 Msa1328840:CDS 65.0%
GGCCGAAGCAGCAGCTAGGG+AGG + chr8_4:46861366-46861385 Msa1328840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 46856528 46862094 46856528 ID=Msa1328840;Name=Msa1328840
chr8_4 mRNA 46856528 46862094 46856528 ID=Msa1328840-mRNA-1;Parent=Msa1328840;Name=Msa1328840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=272|1|1|1|0.66|0.42|7|382|308
chr8_4 exon 46856528 46856714 46856528 ID=Msa1328840-mRNA-1:exon:13413;Parent=Msa1328840-mRNA-1
chr8_4 exon 46858654 46858888 46858654 ID=Msa1328840-mRNA-1:exon:13414;Parent=Msa1328840-mRNA-1
chr8_4 exon 46859011 46859258 46859011 ID=Msa1328840-mRNA-1:exon:13415;Parent=Msa1328840-mRNA-1
chr8_4 exon 46859901 46859988 46859901 ID=Msa1328840-mRNA-1:exon:13416;Parent=Msa1328840-mRNA-1
chr8_4 exon 46860291 46860374 46860291 ID=Msa1328840-mRNA-1:exon:13417;Parent=Msa1328840-mRNA-1
chr8_4 exon 46861124 46861488 46861124 ID=Msa1328840-mRNA-1:exon:13418;Parent=Msa1328840-mRNA-1
chr8_4 exon 46861721 46862094 46861721 ID=Msa1328840-mRNA-1:exon:13419;Parent=Msa1328840-mRNA-1
chr8_4 five_prime_UTR 46856528 46856714 46856528 ID=Msa1328840-mRNA-1:five_prime_utr;Parent=Msa1328840-mRNA-1
chr8_4 five_prime_UTR 46858654 46858738 46858654 ID=Msa1328840-mRNA-1:five_prime_utr;Parent=Msa1328840-mRNA-1
chr8_4 CDS 46858739 46858888 46858739 ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4 CDS 46859011 46859258 46859011 ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4 CDS 46859901 46859988 46859901 ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4 CDS 46860291 46860374 46860291 ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4 CDS 46861124 46861480 46861124 ID=Msa1328840-mRNA-1:cds;Parent=Msa1328840-mRNA-1
chr8_4 three_prime_UTR 46861481 46861488 46861481 ID=Msa1328840-mRNA-1:three_prime_utr;Parent=Msa1328840-mRNA-1
chr8_4 three_prime_UTR 46861721 46862094 46861721 ID=Msa1328840-mRNA-1:three_prime_utr;Parent=Msa1328840-mRNA-1
Gene Sequence

>Msa1328840

ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGTTGAAAGCTGGAGTAGTCAAACACGGGGCTGGAAAATGGCGCACAATACTCATGGATCCTGAGTTCAGTTCCATTTTGCGTACGCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAAGCAAAACTTGCCCTTAAGAGCCTTCCAGCCCCCAAAACTGACAATAACCAATTGGCCTTGAGTAAAGTAGTTCAACGTGAAGACTTTCTCGATATTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGCCCCTAACTATTTGTAGTGGAACATTGCAATCTCCTAGTTCAAAAGAACAAGTATCAAGGTTGGGAGACAATAATGTATTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAAATTATGCCAAGTTCAGCGGTCTCTGAGAAAAGAGGAAGCTCTTCTCTGATGCTTGTGGAAGCGAGGTCCAAAGATTCTCCGGAGGTGGAGAAGATGTGTGATGTCAACATCCTTTCAAAATCCCAAATTGAGGCAGAGCTATCAAAAGTGAGGGGGATGTCAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCCGAAGCAGCAGCTAGGGAGGCGGAGATTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGATGAAGGCACTCAAATGCAAAATGCTTCATATTTGGTAG
Protein sequence

>Msa1328840

MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKSLPAPKTDNNQLALSKVVQREDFLDIKPLTISGGTLQSPKPLTICSGTLQSPSSKEQVSRLGDNNVLEAIVNMKEPKGSDKAAIASYIEEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVSEKRGSSSLMLVEARSKDSPEVEKMCDVNILSKSQIEAELSKVRGMSAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAMKALKCKMLHIW*