AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210830 MtrunA17_Chr4g0059611 98.505 602 9 0 1 602 1 602 0.0 1221
Msa1210830 MtrunA17_Chr5g0415131 45.833 624 299 16 2 597 17 629 3.83e-161 476
Msa1210830 MtrunA17_Chr6g0488831 36.156 307 189 2 1 302 7 311 1.43e-50 187
Msa1210830 MtrunA17_Chr3g0098141 32.313 294 175 4 7 278 28 319 4.32e-38 150
Msa1210830 MtrunA17_Chr3g0098141 28.025 157 96 3 396 545 494 640 6.13e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210830 AT5G62580.2 48.046 614 262 16 5 594 4 584 1.23e-166 489
Msa1210830 AT5G62580.1 48.046 614 262 16 5 594 4 584 1.23e-166 489
Msa1210830 AT1G27210.1 46.029 554 260 12 6 543 34 564 1.63e-142 427
Msa1210830 AT1G59850.1 49.455 275 137 1 6 278 21 295 2.15e-77 254
Msa1210830 AT2G07170.1 28.504 635 346 16 7 580 27 614 5.12e-64 225
Msa1210830 AT4G27060.1 30.545 550 321 12 7 517 42 569 7.12e-60 214
Msa1210830 AT1G50890.1 32.517 286 177 4 7 278 37 320 4.70e-43 166

Find 207 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGATTTCTACCCTCTTTC+AGG 0.139158 8_1:-70039680 Msa1210830:three_prime_UTR
AATAGTGCTCGATTCATTTC+TGG 0.163240 8_1:+70041178 None:intergenic
TCTTAAGCGTGAAGTATTTA+AGG 0.177171 8_1:-70042234 Msa1210830:CDS
TCACACTTCGTTGAAGAATT+TGG 0.206334 8_1:-70042153 Msa1210830:CDS
CTTGAACATCCCAATTCTTT+TGG 0.251195 8_1:+70041293 None:intergenic
TCTATATGTGCCTGTCATTA+TGG 0.271822 8_1:-70039721 Msa1210830:three_prime_UTR
GAAAATTAAACCAAAAGAAT+TGG 0.280560 8_1:-70041303 Msa1210830:CDS
CCTTCTCTTATTACTACTTA+AGG 0.285771 8_1:+70041342 None:intergenic
TTAGAAGAAGATTGTGATTT+CGG 0.288500 8_1:+70041796 None:intergenic
GGCGGAGACGCTGGTGGTTT+TGG 0.295029 8_1:-70042075 Msa1210830:CDS
CAGCATTCCTGCCAGCTGTT+TGG 0.303785 8_1:+70040521 None:intergenic
CAAGAACAGAACGCGCAAAT+TGG 0.304393 8_1:-70042347 Msa1210830:CDS
TAGTAATAAGAGAAGGAGTT+TGG 0.307829 8_1:-70041335 Msa1210830:CDS
CTTCCGTACCGGAGATTTAT+CGG 0.320464 8_1:+70042589 None:intergenic
CGTGAACCTTCTTTATAGAT+TGG 0.329359 8_1:+70040397 None:intergenic
CTCCAGGAGAGGGATGAAAA+TGG 0.330109 8_1:-70041247 Msa1210830:CDS
CTTCACGCTTAAGAAGCTTC+TGG 0.338758 8_1:+70042243 None:intergenic
TCATCAGTTGATTCTCAATC+AGG 0.340194 8_1:-70040204 Msa1210830:three_prime_UTR
GGATGATATCTCTTATGATT+TGG 0.342193 8_1:-70040710 Msa1210830:CDS
TTCATCGGAAGCTCACAAAA+TGG 0.351864 8_1:-70040778 Msa1210830:CDS
TACTTGCGCACGATGATCAT+TGG 0.356977 8_1:-70039993 Msa1210830:three_prime_UTR
CGATTTGTTGCAACTGGTTG+CGG 0.364471 8_1:+70041008 None:intergenic
ACTCTACTCAAGAGCTGGTT+GGG 0.365406 8_1:+70043042 None:intergenic
CTCCATCGAGCCTGAATCTC+TGG 0.366278 8_1:+70040482 None:intergenic
GCTTCTCGATTTGTTGCAAC+TGG 0.369994 8_1:+70041002 None:intergenic
CGTGGAGAGGGATTTCTTAT+CGG 0.371864 8_1:-70042048 Msa1210830:CDS
GTTCAGTAATGGCGAATCTA+AGG 0.377007 8_1:-70041438 Msa1210830:CDS
TCAAGTGGCCATGGCTGATC+AGG 0.377207 8_1:-70041275 Msa1210830:CDS
GAAGAATTTGGTTCCGTGTT+TGG 0.392603 8_1:-70042141 Msa1210830:CDS
AGTGTCGCGGTCGGAGAGTT+TGG 0.392872 8_1:+70042709 None:intergenic
AATCGTTGAGCAATCGTGAT+TGG 0.398731 8_1:-70042115 Msa1210830:CDS
GGATGAAAATGGAACTCCTT+TGG 0.400705 8_1:-70041236 Msa1210830:CDS
TGAAGTATTTAAGGCGAAAT+CGG 0.401792 8_1:-70042225 Msa1210830:CDS
TTTGCTAATCTAGCAGGTTC+CGG 0.403125 8_1:+70042281 None:intergenic
ATGATCATCGTGCGCAAGTA+AGG 0.404633 8_1:+70039996 None:intergenic
AGTAATAAGAGAAGGAGTTT+GGG 0.408639 8_1:-70041334 Msa1210830:CDS
TCATTTCCAACCAAAACAAA+AGG 0.412202 8_1:+70039795 None:intergenic
TATGATTTGGCTGTATCAAA+TGG 0.412584 8_1:-70040697 Msa1210830:CDS
GGTGCCGGAGTCGGTGGTTA+CGG 0.420260 8_1:+70042790 None:intergenic
GGTGGACTGAATCTATTAAC+AGG 0.425031 8_1:+70041403 None:intergenic
GGATTTCTTATCGGAATTCA+AGG 0.428297 8_1:-70042039 Msa1210830:CDS
AAGCGCGTTACCGTGAGTTT+CGG 0.429364 8_1:+70042538 None:intergenic
TTGCTAGCAGTAGAACTATC+TGG 0.434089 8_1:+70041382 None:intergenic
AGTCTTTATGATTGCGGAGG+TGG 0.436488 8_1:+70042819 None:intergenic
GATCATTGGACAAGAATGAT+TGG 0.438884 8_1:-70039979 Msa1210830:three_prime_UTR
TTTCTCACCGGAGATGTTGC+CGG 0.441514 8_1:-70042856 Msa1210830:five_prime_UTR
GATCGACGGAGCTCCGGATC+CGG 0.442540 8_1:-70042300 Msa1210830:CDS
AAAATTAAACCAAAAGAATT+GGG 0.443670 8_1:-70041302 Msa1210830:CDS
TGCTGCACAATTTAGAAAGC+AGG 0.447396 8_1:-70040229 Msa1210830:three_prime_UTR
TATGATTGCGGAGGTGGATC+GGG 0.448528 8_1:+70042825 None:intergenic
GTTGAAGCTGGTGGCGCGTC+CGG 0.449963 8_1:-70042176 Msa1210830:CDS
TGCTGAAGAAGGCGTGAAGC+TGG 0.453424 8_1:-70040040 Msa1210830:three_prime_UTR
AGAACTGCGGGGATAAATAC+TGG 0.453512 8_1:+70040581 None:intergenic
AAAAGGGCGGTGAGAGGGGA+AGG 0.455385 8_1:+70039812 None:intergenic
ATCGTTGAGCAATCGTGATT+GGG 0.455566 8_1:-70042114 Msa1210830:CDS
AATCTAGCAGGTTCCGGATC+CGG 0.457015 8_1:+70042287 None:intergenic
GGCTGATCAGGGTGAACTCC+AGG 0.457494 8_1:-70041263 Msa1210830:CDS
TACTCTACTCAAGAGCTGGT+TGG 0.459268 8_1:+70043041 None:intergenic
GTGAACAGAGCTTCTGATAA+CGG 0.461029 8_1:+70042374 None:intergenic
TCGATCAATCAACATTTCTC+TGG 0.463128 8_1:+70040165 None:intergenic
GGTGGATCGGGAGGAATCGC+CGG 0.463754 8_1:+70042837 None:intergenic
CACCACGTCGAGAGAACTGC+GGG 0.467055 8_1:+70040569 None:intergenic
GAATGATTGGAGTGCTTTCA+CGG 0.468973 8_1:-70039966 Msa1210830:three_prime_UTR
AATTCATGTTGCTTGCTACC+TGG 0.471041 8_1:-70040646 Msa1210830:CDS
TCCGTATCATGAAGAGAGTC+AGG 0.477533 8_1:-70041104 Msa1210830:CDS
TACATGCAAGAGAGGAAAAC+CGG 0.477573 8_1:+70042626 None:intergenic
TTAAGAAGCTTCTGGAACTT+CGG 0.478436 8_1:+70042251 None:intergenic
AACAGCTTTGCTAATCTAGC+AGG 0.480437 8_1:+70042275 None:intergenic
TTCCGCGATCGACGGAGCTC+CGG 0.480465 8_1:-70042306 Msa1210830:CDS
GAAGATTGTGATTTCGGAGG+TGG 0.480954 8_1:+70041802 None:intergenic
TTATGATTGCGGAGGTGGAT+CGG 0.487731 8_1:+70042824 None:intergenic
CAAGACTATGCCTGGTCCAT+AGG 0.490752 8_1:+70040369 None:intergenic
GAGTCTACTTGATCTTCTGC+AGG 0.492839 8_1:-70040972 Msa1210830:intron
TTCACTTTGCTTGTTTCCAA+AGG 0.493034 8_1:+70041220 None:intergenic
GATAGCAACTTAGATAAATA+CGG 0.496058 8_1:+70039835 None:intergenic
CAAAACAAAAGGGCGGTGAG+AGG 0.496670 8_1:+70039806 None:intergenic
GGAATCGCCGGCAACATCTC+CGG 0.497413 8_1:+70042849 None:intergenic
ATATGACACTATTGTAAAAG+AGG 0.498872 8_1:-70039939 Msa1210830:three_prime_UTR
TCTCAAAATTCATGTAATCC+AGG 0.499696 8_1:-70041460 Msa1210830:CDS
ATTCTTCAACGAAGTGTGAC+CGG 0.501369 8_1:+70042157 None:intergenic
AAATCACAATCTTCTTCTAA+AGG 0.501812 8_1:-70041793 Msa1210830:intron
GAAAGCTGCGGCGGAGACGC+TGG 0.503998 8_1:-70042084 Msa1210830:CDS
TGAAGTTATGAATCAGATGT+TGG 0.505651 8_1:-70041866 Msa1210830:CDS
AGATTCGCCATTACTGAACC+TGG 0.505669 8_1:+70041442 None:intergenic
GATGAGTTCTGTGGCGGCAA+GGG 0.505954 8_1:+70042682 None:intergenic
ACTATATTATATAGAGTGCC+AGG 0.506674 8_1:-70039897 Msa1210830:three_prime_UTR
AAAACAAAAGGGCGGTGAGA+GGG 0.508041 8_1:+70039807 None:intergenic
GGAGTCGGTGGTTACGGTGG+AGG 0.508645 8_1:+70042796 None:intergenic
CAGAGGTACACACTAATTCA+AGG 0.508694 8_1:-70040438 Msa1210830:CDS
GTTATCAGAAGCTCTGTTCA+CGG 0.509351 8_1:-70042372 Msa1210830:CDS
ACATGGCCTTGAGTTGGCAT+TGG 0.514122 8_1:-70040731 Msa1210830:CDS
CCTGCCAGCTGTTTGGTGCA+TGG 0.518138 8_1:+70040528 None:intergenic
AATCAACATTTCTCTGGTCA+AGG 0.520569 8_1:+70040171 None:intergenic
TCTTTAGAGACCCGTGTACA+TGG 0.524010 8_1:-70040748 Msa1210830:CDS
GAGTTGAATGATGCATCAAT+TGG 0.524050 8_1:+70040305 None:intergenic
ACCGCAGAACGTAAAACAAA+AGG 0.524333 8_1:-70042747 Msa1210830:CDS
GCGAGGATCTTCGAGAGGTA+AGG 0.524463 8_1:+70042512 None:intergenic
ATCGGAAGTGTTGTTGAAGC+TGG 0.525821 8_1:-70042188 Msa1210830:CDS
GATAGTGCCAAGACTATGCC+TGG 0.527497 8_1:+70040361 None:intergenic
CAACATCTCCGGTGAGAAAG+TGG 0.527557 8_1:+70042860 None:intergenic
GGCTCAGAGAATGCAAGTGA+TGG 0.530432 8_1:-70041499 Msa1210830:intron
TCGGCGTTATTGACGCTGAT+CGG 0.531739 8_1:-70042206 Msa1210830:CDS
GTGGCAAGATAATGCAGAAA+CGG 0.533307 8_1:+70042430 None:intergenic
TTCTGATAACGGTTTCAGAA+AGG 0.534166 8_1:+70042385 None:intergenic
GGTTTCAGAAAGGTATAAAA+CGG 0.534530 8_1:+70042395 None:intergenic
CATTTCCAACCAAAACAAAA+GGG 0.535172 8_1:+70039796 None:intergenic
TCCTGACTCTCTTCATGATA+CGG 0.537740 8_1:+70041103 None:intergenic
TGTCTTGCTTCCGCGATCGA+CGG 0.538457 8_1:-70042314 Msa1210830:CDS
GCTACCATGCACCAAACAGC+TGG 0.539989 8_1:-70040532 Msa1210830:CDS
TCTTTGGAAACATTATTGAC+AGG 0.543816 8_1:+70041073 None:intergenic
AAAACGGTTGCTTCGTGACG+TGG 0.548441 8_1:+70042411 None:intergenic
CGGAATTCACACACGCGGAT+CGG 0.552405 8_1:+70042450 None:intergenic
TGAATCAGATGTTGGAAGCA+TGG 0.553306 8_1:-70041858 Msa1210830:CDS
TAGTGATATACCATAATGAC+AGG 0.555053 8_1:+70039711 None:intergenic
AGCCAGAGATTCAGGCTCGA+TGG 0.555726 8_1:-70040484 Msa1210830:CDS
CCATGCACCAAACAGCTGGC+AGG 0.559148 8_1:-70040528 Msa1210830:CDS
AAACAAAAGGGCGGTGAGAG+GGG 0.559673 8_1:+70039808 None:intergenic
TGATGAGTTCTGTGGCGGCA+AGG 0.561237 8_1:+70042681 None:intergenic
TATCACTAATCCTCTGGCAG+AGG 0.562174 8_1:-70040455 Msa1210830:CDS
GCCGGAGTCGGTGGTTACGG+TGG 0.562226 8_1:+70042793 None:intergenic
GGTGAAGGGGAGCCTGAAAG+AGG 0.563399 8_1:+70039668 None:intergenic
ATCCGGAGCTCCGTCGATCG+CGG 0.564038 8_1:+70042304 None:intergenic
TGAACGCATTGCTTCCGTAC+CGG 0.564782 8_1:+70042578 None:intergenic
CCTCGACACAACCACCGTAC+CGG 0.564949 8_1:-70042645 Msa1210830:CDS
GGTTGTGAAGGTGCCGGAGT+CGG 0.565007 8_1:+70042781 None:intergenic
AGATTTATCGGAAGCGTCGG+TGG 0.568710 8_1:+70042601 None:intergenic
TCATAGCCAATCTATAAAGA+AGG 0.569844 8_1:-70040403 Msa1210830:three_prime_UTR
GCGTGGGAGTTATGTGAGAA+CGG 0.571788 8_1:+70042892 None:intergenic
CTATGGACCAGGCATAGTCT+TGG 0.572278 8_1:-70040368 Msa1210830:three_prime_UTR
AGTCTTGGCACTATCACCCA+TGG 0.574191 8_1:-70040353 Msa1210830:three_prime_UTR
ATCACAAAGATGCATTCCCA+TGG 0.576419 8_1:+70040336 None:intergenic
TTAGATAAATACGGAGTACA+TGG 0.578157 8_1:+70039844 None:intergenic
ATCAACATTTCTCTGGTCAA+GGG 0.579894 8_1:+70040172 None:intergenic
CCAACTCAAGGCCATGTACA+CGG 0.583283 8_1:+70040737 None:intergenic
CTCAACGATTCCACCAAACA+CGG 0.583409 8_1:+70042128 None:intergenic
CGTGAAGACGAAGATGCAAA+CGG 0.584101 8_1:+70042936 None:intergenic
ACATTCTTACAGAAATTCAT+CGG 0.584524 8_1:-70040793 Msa1210830:intron
TATGACACTATTGTAAAAGA+GGG 0.587661 8_1:-70039938 Msa1210830:three_prime_UTR
TGGAGGAGTCTTTATGATTG+CGG 0.589386 8_1:+70042813 None:intergenic
CAACTCAAGGCCATGTACAC+GGG 0.590691 8_1:+70040738 None:intergenic
GCTCAGAGAATGCAAGTGAT+GGG 0.590818 8_1:-70041498 Msa1210830:intron
CGACGCTTCCGATAAATCTC+CGG 0.590939 8_1:-70042597 Msa1210830:CDS
GGCGGTGAGGAAAGCTGCGG+CGG 0.592263 8_1:-70042093 Msa1210830:CDS
ATGTAATCCAGGTTCAGTAA+TGG 0.594185 8_1:-70041449 Msa1210830:CDS
TGTCTTGTTAATGCTGAAGA+AGG 0.596709 8_1:-70040051 Msa1210830:three_prime_UTR
AAAACAAACCACTTTCTCAC+CGG 0.598721 8_1:-70042868 Msa1210830:five_prime_UTR
TCCACCGTAACCACCGACTC+CGG 0.599380 8_1:-70042794 Msa1210830:five_prime_UTR
GAATTTGGTTCCGTGTTTGG+TGG 0.601791 8_1:-70042138 Msa1210830:CDS
GAAGAAGATTGTGATTTCGG+AGG 0.604897 8_1:+70041799 None:intergenic
AAAGAATTGGGATGTTCAAG+TGG 0.606059 8_1:-70041290 Msa1210830:CDS
CGGTGGAGTACATGCAAGAG+AGG 0.606172 8_1:+70042618 None:intergenic
TGGTGCATGGTAGCAAGTGA+TGG 0.606370 8_1:+70040541 None:intergenic
CGGAGATTTATCGGAAGCGT+CGG 0.606842 8_1:+70042598 None:intergenic
CCTTAAGTAGTAATAAGAGA+AGG 0.608938 8_1:-70041342 Msa1210830:CDS
AGCTGCGGCGGAGACGCTGG+TGG 0.609203 8_1:-70042081 Msa1210830:CDS
GAGTTCACCCTGATCAGCCA+TGG 0.611946 8_1:+70041267 None:intergenic
TTGGGATGTTCAAGTGGCCA+TGG 0.613475 8_1:-70041284 Msa1210830:CDS
AAAGGGCGGTGAGAGGGGAA+GGG 0.614806 8_1:+70039813 None:intergenic
GTGAAGGGGAGCCTGAAAGA+GGG 0.617163 8_1:+70039669 None:intergenic
TGTGAAGGTGCCGGAGTCGG+TGG 0.618376 8_1:+70042784 None:intergenic
GTTCTGCGGTGACGACATTG+TGG 0.618381 8_1:+70042760 None:intergenic
TATCATCCAATGCCAACTCA+AGG 0.619787 8_1:+70040725 None:intergenic
GTCTTGGCACTATCACCCAT+GGG 0.619828 8_1:-70040352 Msa1210830:three_prime_UTR
CATTGTGGTTGTGAAGGTGC+CGG 0.625292 8_1:+70042775 None:intergenic
ATCAGGGTGAACTCCAGGAG+AGG 0.625370 8_1:-70041258 Msa1210830:CDS
GGATTACTCTCCGAAACTCA+CGG 0.627716 8_1:-70042548 Msa1210830:CDS
AAGGGAGTGAGTGTCGCGGT+CGG 0.628539 8_1:+70042700 None:intergenic
CCGGTACGGTGGTTGTGTCG+AGG 0.630766 8_1:+70042645 None:intergenic
CCGTGTACATGGCCTTGAGT+TGG 0.633390 8_1:-70040737 Msa1210830:CDS
GATTGCGGAGGTGGATCGGG+AGG 0.636299 8_1:+70042828 None:intergenic
CAAGTGGCCATGGCTGATCA+GGG 0.636395 8_1:-70041274 Msa1210830:CDS
CAGTAATGGCGAATCTAAGG+AGG 0.638842 8_1:-70041435 Msa1210830:CDS
GGAAGTGTTGTTGAAGCTGG+TGG 0.639352 8_1:-70042185 Msa1210830:CDS
TGACGACATTGTGGTTGTGA+AGG 0.639933 8_1:+70042769 None:intergenic
TCAGGGTGAACTCCAGGAGA+GGG 0.640702 8_1:-70041257 Msa1210830:CDS
AGGAGTCTTTATGATTGCGG+AGG 0.642732 8_1:+70042816 None:intergenic
CAGAGATTCAGGCTCGATGG+AGG 0.644429 8_1:-70040481 Msa1210830:CDS
TCACAAAGATGCATTCCCAT+GGG 0.647435 8_1:+70040337 None:intergenic
ATTTGGCTGTATCAAATGGA+AGG 0.647861 8_1:-70040693 Msa1210830:CDS
TGAGAATCGACGATTTGACA+AGG 0.648989 8_1:-70041997 Msa1210830:intron
CTGCATTTCGTACTTTGTCG+CGG 0.650646 8_1:-70040255 Msa1210830:three_prime_UTR
TAAACTCTATCAAGGTGAAG+GGG 0.655350 8_1:+70039655 None:intergenic
AAAGCATGGTGGATCTCGTG+TGG 0.659084 8_1:-70041128 Msa1210830:CDS
CTTCCGATAAATCTCCGGTA+CGG 0.659557 8_1:-70042592 Msa1210830:CDS
AAGAGGGTAGAAATCTGTCA+AGG 0.663112 8_1:+70039685 None:intergenic
GCAAGAGAGGAAAACCGGTA+CGG 0.663240 8_1:+70042631 None:intergenic
GATAGTTCTACTGCTAGCAA+TGG 0.663534 8_1:-70041379 Msa1210830:CDS
CGTTGGCGAGGATCTTCGAG+AGG 0.666195 8_1:+70042507 None:intergenic
GCAATCGTGATTGGGCGGTG+AGG 0.672486 8_1:-70042106 Msa1210830:CDS
CTAGCAGTAGAACTATCTGG+TGG 0.675785 8_1:+70041385 None:intergenic
CAGAGAATGCAAGTGATGGG+CGG 0.677967 8_1:-70041495 Msa1210830:CDS
TCAGCATTAACAAGACAACA+TGG 0.681390 8_1:+70040057 None:intergenic
TTCCAACCAAAACAAAAGGG+CGG 0.683986 8_1:+70039799 None:intergenic
TTAGTGTGTACCTCTGCCAG+AGG 0.685485 8_1:+70040445 None:intergenic
GTTGAGCAATCGTGATTGGG+CGG 0.693426 8_1:-70042111 Msa1210830:CDS
AGCAAGCAACATGAATTACG+AGG 0.696945 8_1:+70040652 None:intergenic
ACGGAGGCGACGAATTACGT+TGG 0.697544 8_1:+70042490 None:intergenic
AGAGAGGAAAACCGGTACGG+TGG 0.698045 8_1:+70042634 None:intergenic
CGGCAAGGGAGTGAGTGTCG+CGG 0.698773 8_1:+70042696 None:intergenic
AAATTCTGGAGGAAAACACA+AGG 0.704372 8_1:-70040604 Msa1210830:CDS
TTGGGCGGTGAGGAAAGCTG+CGG 0.707091 8_1:-70042096 Msa1210830:CDS
AATCGTGATGAGTTCTGTGG+CGG 0.713901 8_1:+70042676 None:intergenic
CCACCACGTCGAGAGAACTG+CGG 0.713909 8_1:+70040568 None:intergenic
TGCAATCGTGATGAGTTCTG+TGG 0.715694 8_1:+70042673 None:intergenic
GCAAGCAACATGAATTACGA+GGG 0.715714 8_1:+70040653 None:intergenic
AGAAACGGAATTCACACACG+CGG 0.769480 8_1:+70042445 None:intergenic
ACCACGTCGAGAGAACTGCG+GGG 0.836426 8_1:+70040570 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATTATGATAAATAG+AGG - chr8_1:70041083-70041102 Msa1210830:CDS 15.0%
!! TAGAAATTATGATAAATAGA+GGG - chr8_1:70041084-70041103 Msa1210830:CDS 15.0%
!! AAAATTAAACCAAAAGAATT+GGG - chr8_1:70041425-70041444 Msa1210830:CDS 15.0%
!! AATGCAGTAATAAAAAAAAA+AGG + chr8_1:70042459-70042478 None:intergenic 15.0%
!! TTTGTTCTTGTGTTTATTTA+TGG - chr8_1:70040777-70040796 Msa1210830:CDS 20.0%
!! GAAAATTAAACCAAAAGAAT+TGG - chr8_1:70041424-70041443 Msa1210830:CDS 20.0%
!! AATGTTCATCATTAAAAGAT+TGG + chr8_1:70041907-70041926 None:intergenic 20.0%
! CTTGAGTAGAGTAAAAAAAA+AGG - chr8_1:70039696-70039715 Msa1210830:three_prime_UTR 25.0%
! AAAAATCATCAGAAACATCA+GGG + chr8_1:70040903-70040922 None:intergenic 25.0%
! TTAGAAGAAGATTGTGATTT+CGG + chr8_1:70040934-70040953 None:intergenic 25.0%
! AAATCACAATCTTCTTCTAA+AGG - chr8_1:70040934-70040953 Msa1210830:intron 25.0%
!! CTAAAGGTAGCATTAAATTT+TGG - chr8_1:70040950-70040969 Msa1210830:intron 25.0%
! GATGATAGAATAAAAAAGCA+TGG - chr8_1:70041585-70041604 Msa1210830:intron 25.0%
! GTCATTCTTAAAAAGATCTT+TGG + chr8_1:70041673-70041692 None:intergenic 25.0%
! GGAGATAAAAAAAAGTAACT+TGG + chr8_1:70041800-70041819 None:intergenic 25.0%
!!! TGTTTTTGTCTGCAAATTTT+TGG - chr8_1:70041822-70041841 Msa1210830:CDS 25.0%
! ACATTCTTACAGAAATTCAT+CGG - chr8_1:70041934-70041953 Msa1210830:intron 25.0%
!!! ATTTTTTGAGCTCTAAATTC+TGG - chr8_1:70042109-70042128 Msa1210830:CDS 25.0%
! ATATGACACTATTGTAAAAG+AGG - chr8_1:70042788-70042807 Msa1210830:five_prime_UTR 25.0%
! TATGACACTATTGTAAAAGA+GGG - chr8_1:70042789-70042808 Msa1210830:five_prime_UTR 25.0%
! GATAGCAACTTAGATAAATA+CGG + chr8_1:70042895-70042914 None:intergenic 25.0%
! GGTTTCAGAAAGGTATAAAA+CGG + chr8_1:70040335-70040354 None:intergenic 30.0%
! TCTTAAGCGTGAAGTATTTA+AGG - chr8_1:70040493-70040512 Msa1210830:CDS 30.0%
! TGAAGTATTTAAGGCGAAAT+CGG - chr8_1:70040502-70040521 Msa1210830:CDS 30.0%
! GATTGAGATTGTGTTTGTTT+TGG - chr8_1:70040819-70040838 Msa1210830:intron 30.0%
!!! GATTGTGTTTGTTTTGGTTT+AGG - chr8_1:70040825-70040844 Msa1210830:intron 30.0%
TGAAGTTATGAATCAGATGT+TGG - chr8_1:70040861-70040880 Msa1210830:intron 30.0%
GAAAAATCATCAGAAACATC+AGG + chr8_1:70040904-70040923 None:intergenic 30.0%
!!! ACAATCTGGCTTTCTATTTT+TGG + chr8_1:70041039-70041058 None:intergenic 30.0%
GACATTAAACAAACACAATC+TGG + chr8_1:70041053-70041072 None:intergenic 30.0%
! TTGTGATCTATTGCATTGAT+TGG - chr8_1:70041164-70041183 Msa1210830:CDS 30.0%
! TTTTTCTGCGTTTGTGTTTT+TGG - chr8_1:70041207-70041226 Msa1210830:CDS 30.0%
!!! TTACATGAATTTTGAGACAC+AGG + chr8_1:70041264-70041283 None:intergenic 30.0%
TCTCAAAATTCATGTAATCC+AGG - chr8_1:70041267-70041286 Msa1210830:CDS 30.0%
CCTTCTCTTATTACTACTTA+AGG + chr8_1:70041388-70041407 None:intergenic 30.0%
CCTTAAGTAGTAATAAGAGA+AGG - chr8_1:70041385-70041404 Msa1210830:CDS 30.0%
TAGTAATAAGAGAAGGAGTT+TGG - chr8_1:70041392-70041411 Msa1210830:CDS 30.0%
AGTAATAAGAGAAGGAGTTT+GGG - chr8_1:70041393-70041412 Msa1210830:CDS 30.0%
! GATAGAATAAAAAAGCATGG+TGG - chr8_1:70041588-70041607 Msa1210830:intron 30.0%
! TCTTTGGAAACATTATTGAC+AGG + chr8_1:70041657-70041676 None:intergenic 30.0%
AAATTTGCAGACAAAAACAG+TGG + chr8_1:70041821-70041840 None:intergenic 30.0%
!! TTTGTCTGCAAATTTTTGGA+AGG - chr8_1:70041826-70041845 Msa1210830:CDS 30.0%
GATGAATTTCTGTAAGAATG+TGG + chr8_1:70041935-70041954 None:intergenic 30.0%
GGATGATATCTCTTATGATT+TGG - chr8_1:70042017-70042036 Msa1210830:CDS 30.0%
! TATGATTTGGCTGTATCAAA+TGG - chr8_1:70042030-70042049 Msa1210830:CDS 30.0%
TCATAGCCAATCTATAAAGA+AGG - chr8_1:70042324-70042343 Msa1210830:CDS 30.0%
! ACTATATTATATAGAGTGCC+AGG - chr8_1:70042830-70042849 Msa1210830:five_prime_UTR 30.0%
TTAGATAAATACGGAGTACA+TGG + chr8_1:70042886-70042905 None:intergenic 30.0%
CATTTCCAACCAAAACAAAA+GGG + chr8_1:70042934-70042953 None:intergenic 30.0%
TCATTTCCAACCAAAACAAA+AGG + chr8_1:70042935-70042954 None:intergenic 30.0%
TAGTGATATACCATAATGAC+AGG + chr8_1:70043019-70043038 None:intergenic 30.0%
! TTTTTACTCTACTCAAGAGC+TGG + chr8_1:70039693-70039712 None:intergenic 35.0%
!!! ACTGCACTGTCGTTTTATTT+GGG + chr8_1:70039756-70039775 None:intergenic 35.0%
!!! AACTGCACTGTCGTTTTATT+TGG + chr8_1:70039757-70039776 None:intergenic 35.0%
!!! AAAGTGGTTTGTTTTTGCGT+GGG + chr8_1:70039854-70039873 None:intergenic 35.0%
AAAACAAACCACTTTCTCAC+CGG - chr8_1:70039859-70039878 Msa1210830:three_prime_UTR 35.0%
!!! ACCTTTTGTTTTACGTTCTG+CGG + chr8_1:70039984-70040003 None:intergenic 35.0%
!! TTCTGATAACGGTTTCAGAA+AGG + chr8_1:70040345-70040364 None:intergenic 35.0%
!! TTAAGAAGCTTCTGGAACTT+CGG + chr8_1:70040479-70040498 None:intergenic 35.0%
TCACACTTCGTTGAAGAATT+TGG - chr8_1:70040574-70040593 Msa1210830:CDS 35.0%
GGATTTCTTATCGGAATTCA+AGG - chr8_1:70040688-70040707 Msa1210830:CDS 35.0%
!!! ATGAATTTTGAGACACAGGA+GGG + chr8_1:70041260-70041279 None:intergenic 35.0%
ATGTAATCCAGGTTCAGTAA+TGG - chr8_1:70041278-70041297 Msa1210830:CDS 35.0%
! CTTGAACATCCCAATTCTTT+TGG + chr8_1:70041437-70041456 None:intergenic 35.0%
AAAGAATTGGGATGTTCAAG+TGG - chr8_1:70041437-70041456 Msa1210830:CDS 35.0%
TTCACTTTGCTTGTTTCCAA+AGG + chr8_1:70041510-70041529 None:intergenic 35.0%
AATAGTGCTCGATTCATTTC+TGG + chr8_1:70041552-70041571 None:intergenic 35.0%
! AGATTGGTTCATGCATGTAA+AGG + chr8_1:70041891-70041910 None:intergenic 35.0%
GAATTTCTGTAAGAATGTGG+AGG + chr8_1:70041932-70041951 None:intergenic 35.0%
ATTTGGCTGTATCAAATGGA+AGG - chr8_1:70042034-70042053 Msa1210830:CDS 35.0%
!!! TTTTGAGCTCTAAATTCTGG+AGG - chr8_1:70042112-70042131 Msa1210830:CDS 35.0%
! AAATTCTGGAGGAAAACACA+AGG - chr8_1:70042123-70042142 Msa1210830:CDS 35.0%
! ATTTTACAAGCCAGAGATTC+AGG - chr8_1:70042235-70042254 Msa1210830:CDS 35.0%
!! AGGTTTTATCACTAATCCTC+TGG - chr8_1:70042266-70042285 Msa1210830:CDS 35.0%
CGTGAACCTTCTTTATAGAT+TGG + chr8_1:70042333-70042352 None:intergenic 35.0%
GAGTTGAATGATGCATCAAT+TGG + chr8_1:70042425-70042444 None:intergenic 35.0%
! TCATCAGTTGATTCTCAATC+AGG - chr8_1:70042523-70042542 Msa1210830:CDS 35.0%
ATCAACATTTCTCTGGTCAA+GGG + chr8_1:70042558-70042577 None:intergenic 35.0%
AATCAACATTTCTCTGGTCA+AGG + chr8_1:70042559-70042578 None:intergenic 35.0%
TCGATCAATCAACATTTCTC+TGG + chr8_1:70042565-70042584 None:intergenic 35.0%
TCAGCATTAACAAGACAACA+TGG + chr8_1:70042673-70042692 None:intergenic 35.0%
! TGTCTTGTTAATGCTGAAGA+AGG - chr8_1:70042676-70042695 Msa1210830:CDS 35.0%
GATCATTGGACAAGAATGAT+TGG - chr8_1:70042748-70042767 Msa1210830:CDS 35.0%
TTTAATGCAAAAAAGCAGCC+TGG + chr8_1:70042851-70042870 None:intergenic 35.0%
!!! TGTTTTGGTTGGAAATGAAG+TGG - chr8_1:70042937-70042956 Msa1210830:five_prime_UTR 35.0%
!!! GTTTTGGTTGGAAATGAAGT+GGG - chr8_1:70042938-70042957 Msa1210830:five_prime_UTR 35.0%
TCTATATGTGCCTGTCATTA+TGG - chr8_1:70043006-70043025 Msa1210830:five_prime_UTR 35.0%
!!! GAAAGTGGTTTGTTTTTGCG+TGG + chr8_1:70039855-70039874 None:intergenic 40.0%
TGGAGGAGTCTTTATGATTG+CGG + chr8_1:70039917-70039936 None:intergenic 40.0%
ACCGCAGAACGTAAAACAAA+AGG - chr8_1:70039980-70039999 Msa1210830:three_prime_UTR 40.0%
TACATGCAAGAGAGGAAAAC+CGG + chr8_1:70040104-70040123 None:intergenic 40.0%
! AAGCAATGCGTTCAGCTTTT+CGG - chr8_1:70040158-70040177 Msa1210830:three_prime_UTR 40.0%
GTGGCAAGATAATGCAGAAA+CGG + chr8_1:70040300-70040319 None:intergenic 40.0%
GTGAACAGAGCTTCTGATAA+CGG + chr8_1:70040356-70040375 None:intergenic 40.0%
GTTATCAGAAGCTCTGTTCA+CGG - chr8_1:70040355-70040374 Msa1210830:three_prime_UTR 40.0%
TTTGCTAATCTAGCAGGTTC+CGG + chr8_1:70040449-70040468 None:intergenic 40.0%
AACAGCTTTGCTAATCTAGC+AGG + chr8_1:70040455-70040474 None:intergenic 40.0%
ATTCTTCAACGAAGTGTGAC+CGG + chr8_1:70040573-70040592 None:intergenic 40.0%
! GAAGAATTTGGTTCCGTGTT+TGG - chr8_1:70040586-70040605 Msa1210830:CDS 40.0%
AATCGTTGAGCAATCGTGAT+TGG - chr8_1:70040612-70040631 Msa1210830:CDS 40.0%
ATCGTTGAGCAATCGTGATT+GGG - chr8_1:70040613-70040632 Msa1210830:CDS 40.0%
TGAGAATCGACGATTTGACA+AGG - chr8_1:70040730-70040749 Msa1210830:CDS 40.0%
TGAATCAGATGTTGGAAGCA+TGG - chr8_1:70040869-70040888 Msa1210830:intron 40.0%
GAAGAAGATTGTGATTTCGG+AGG + chr8_1:70040931-70040950 None:intergenic 40.0%
TAGATCACAAACAGACGCAT+TGG + chr8_1:70041154-70041173 None:intergenic 40.0%
!!! CATGAATTTTGAGACACAGG+AGG + chr8_1:70041261-70041280 None:intergenic 40.0%
GTTCAGTAATGGCGAATCTA+AGG - chr8_1:70041289-70041308 Msa1210830:CDS 40.0%
!! GGTGGACTGAATCTATTAAC+AGG + chr8_1:70041327-70041346 None:intergenic 40.0%
TTGCTAGCAGTAGAACTATC+TGG + chr8_1:70041348-70041367 None:intergenic 40.0%
! GATAGTTCTACTGCTAGCAA+TGG - chr8_1:70041348-70041367 Msa1210830:CDS 40.0%
GGATGAAAATGGAACTCCTT+TGG - chr8_1:70041491-70041510 Msa1210830:CDS 40.0%
TCCTGACTCTCTTCATGATA+CGG + chr8_1:70041627-70041646 None:intergenic 40.0%
TTCATCGGAAGCTCACAAAA+TGG - chr8_1:70041949-70041968 Msa1210830:intron 40.0%
TATCATCCAATGCCAACTCA+AGG + chr8_1:70042005-70042024 None:intergenic 40.0%
GCAAGCAACATGAATTACGA+GGG + chr8_1:70042077-70042096 None:intergenic 40.0%
AGCAAGCAACATGAATTACG+AGG + chr8_1:70042078-70042097 None:intergenic 40.0%
! AATTCATGTTGCTTGCTACC+TGG - chr8_1:70042081-70042100 Msa1210830:CDS 40.0%
! CAGAGGTACACACTAATTCA+AGG - chr8_1:70042289-70042308 Msa1210830:CDS 40.0%
! GAAGGTTCACGTTTTACCTA+TGG - chr8_1:70042342-70042361 Msa1210830:CDS 40.0%
TCACAAAGATGCATTCCCAT+GGG + chr8_1:70042393-70042412 None:intergenic 40.0%
ATCACAAAGATGCATTCCCA+TGG + chr8_1:70042394-70042413 None:intergenic 40.0%
TGCTGCACAATTTAGAAAGC+AGG - chr8_1:70042498-70042517 Msa1210830:CDS 40.0%
! GAATGATTGGAGTGCTTTCA+CGG - chr8_1:70042761-70042780 Msa1210830:exon 40.0%
TTCCAACCAAAACAAAAGGG+CGG + chr8_1:70042931-70042950 None:intergenic 40.0%
AAGAGGGTAGAAATCTGTCA+AGG + chr8_1:70043045-70043064 None:intergenic 40.0%
ACAGATTTCTACCCTCTTTC+AGG - chr8_1:70043047-70043066 Msa1210830:five_prime_UTR 40.0%
!! GCTGGTTGGGTTTGTTTTCT+TGG + chr8_1:70039675-70039694 None:intergenic 45.0%
ACTCTACTCAAGAGCTGGTT+GGG + chr8_1:70039688-70039707 None:intergenic 45.0%
TACTCTACTCAAGAGCTGGT+TGG + chr8_1:70039689-70039708 None:intergenic 45.0%
CGTGAAGACGAAGATGCAAA+CGG + chr8_1:70039794-70039813 None:intergenic 45.0%
TTATGATTGCGGAGGTGGAT+CGG + chr8_1:70039906-70039925 None:intergenic 45.0%
AGTCTTTATGATTGCGGAGG+TGG + chr8_1:70039911-70039930 None:intergenic 45.0%
AGGAGTCTTTATGATTGCGG+AGG + chr8_1:70039914-70039933 None:intergenic 45.0%
TGACGACATTGTGGTTGTGA+AGG + chr8_1:70039961-70039980 None:intergenic 45.0%
AATCGTGATGAGTTCTGTGG+CGG + chr8_1:70040054-70040073 None:intergenic 45.0%
TGCAATCGTGATGAGTTCTG+TGG + chr8_1:70040057-70040076 None:intergenic 45.0%
CTTCCGATAAATCTCCGGTA+CGG - chr8_1:70040135-70040154 Msa1210830:three_prime_UTR 45.0%
CTTCCGTACCGGAGATTTAT+CGG + chr8_1:70040141-70040160 None:intergenic 45.0%
GGATTACTCTCCGAAACTCA+CGG - chr8_1:70040179-70040198 Msa1210830:three_prime_UTR 45.0%
AGAAACGGAATTCACACACG+CGG + chr8_1:70040285-70040304 None:intergenic 45.0%
CAAGAACAGAACGCGCAAAT+TGG - chr8_1:70040380-70040399 Msa1210830:three_prime_UTR 45.0%
CTTCACGCTTAAGAAGCTTC+TGG + chr8_1:70040487-70040506 None:intergenic 45.0%
!! ATCGGAAGTGTTGTTGAAGC+TGG - chr8_1:70040539-70040558 Msa1210830:CDS 45.0%
! GAATTTGGTTCCGTGTTTGG+TGG - chr8_1:70040589-70040608 Msa1210830:CDS 45.0%
CTCAACGATTCCACCAAACA+CGG + chr8_1:70040602-70040621 None:intergenic 45.0%
CGTGGAGAGGGATTTCTTAT+CGG - chr8_1:70040679-70040698 Msa1210830:CDS 45.0%
GAAGATTGTGATTTCGGAGG+TGG + chr8_1:70040928-70040947 None:intergenic 45.0%
GCTCAGAGAATGCAAGTGAT+GGG - chr8_1:70041229-70041248 Msa1210830:CDS 45.0%
AGATTCGCCATTACTGAACC+TGG + chr8_1:70041288-70041307 None:intergenic 45.0%
CAGTAATGGCGAATCTAAGG+AGG - chr8_1:70041292-70041311 Msa1210830:CDS 45.0%
CTAGCAGTAGAACTATCTGG+TGG + chr8_1:70041345-70041364 None:intergenic 45.0%
! TTCCATTTTCATCCCTCTCC+TGG + chr8_1:70041485-70041504 None:intergenic 45.0%
TCCGTATCATGAAGAGAGTC+AGG - chr8_1:70041623-70041642 Msa1210830:intron 45.0%
!! CGATTTGTTGCAACTGGTTG+CGG + chr8_1:70041722-70041741 None:intergenic 45.0%
!! GCTTCTCGATTTGTTGCAAC+TGG + chr8_1:70041728-70041747 None:intergenic 45.0%
GAGTCTACTTGATCTTCTGC+AGG - chr8_1:70041755-70041774 Msa1210830:intron 45.0%
! TCTTTAGAGACCCGTGTACA+TGG - chr8_1:70041979-70041998 Msa1210830:intron 45.0%
GAGCTCAAAAAATCTGCTCC+AGG + chr8_1:70042102-70042121 None:intergenic 45.0%
AGAACTGCGGGGATAAATAC+TGG + chr8_1:70042149-70042168 None:intergenic 45.0%
TATCACTAATCCTCTGGCAG+AGG - chr8_1:70042272-70042291 Msa1210830:CDS 45.0%
! TCACGTTTTACCTATGGACC+AGG - chr8_1:70042348-70042367 Msa1210830:CDS 45.0%
CTGCATTTCGTACTTTGTCG+CGG - chr8_1:70042472-70042491 Msa1210830:CDS 45.0%
ATGATCATCGTGCGCAAGTA+AGG + chr8_1:70042734-70042753 None:intergenic 45.0%
TACTTGCGCACGATGATCAT+TGG - chr8_1:70042734-70042753 Msa1210830:CDS 45.0%
AAAACAAAAGGGCGGTGAGA+GGG + chr8_1:70042923-70042942 None:intergenic 45.0%
GCGTGGGAGTTATGTGAGAA+CGG + chr8_1:70039838-70039857 None:intergenic 50.0%
CAACATCTCCGGTGAGAAAG+TGG + chr8_1:70039870-70039889 None:intergenic 50.0%
TTTCTCACCGGAGATGTTGC+CGG - chr8_1:70039871-70039890 Msa1210830:three_prime_UTR 50.0%
TATGATTGCGGAGGTGGATC+GGG + chr8_1:70039905-70039924 None:intergenic 50.0%
! CATTGTGGTTGTGAAGGTGC+CGG + chr8_1:70039955-70039974 None:intergenic 50.0%
GCAAGAGAGGAAAACCGGTA+CGG + chr8_1:70040099-70040118 None:intergenic 50.0%
!! AGATTTATCGGAAGCGTCGG+TGG + chr8_1:70040129-70040148 None:intergenic 50.0%
! CGGAGATTTATCGGAAGCGT+CGG + chr8_1:70040132-70040151 None:intergenic 50.0%
CGACGCTTCCGATAAATCTC+CGG - chr8_1:70040130-70040149 Msa1210830:three_prime_UTR 50.0%
TGAACGCATTGCTTCCGTAC+CGG + chr8_1:70040152-70040171 None:intergenic 50.0%
AAGCGCGTTACCGTGAGTTT+CGG + chr8_1:70040192-70040211 None:intergenic 50.0%
AAAACGGTTGCTTCGTGACG+TGG + chr8_1:70040319-70040338 None:intergenic 50.0%
AATCTAGCAGGTTCCGGATC+CGG + chr8_1:70040443-70040462 None:intergenic 50.0%
TCGGCGTTATTGACGCTGAT+CGG - chr8_1:70040521-70040540 Msa1210830:CDS 50.0%
!! GGAAGTGTTGTTGAAGCTGG+TGG - chr8_1:70040542-70040561 Msa1210830:CDS 50.0%
GTTGAGCAATCGTGATTGGG+CGG - chr8_1:70040616-70040635 Msa1210830:CDS 50.0%
!!! TGGTTTTGGCTAACGTGGAG+AGG - chr8_1:70040666-70040685 Msa1210830:CDS 50.0%
!!! GGTTTTGGCTAACGTGGAGA+GGG - chr8_1:70040667-70040686 Msa1210830:CDS 50.0%
GGCTCAGAGAATGCAAGTGA+TGG - chr8_1:70041228-70041247 Msa1210830:CDS 50.0%
! CAGAGAATGCAAGTGATGGG+CGG - chr8_1:70041232-70041251 Msa1210830:CDS 50.0%
TTGGGATGTTCAAGTGGCCA+TGG - chr8_1:70041443-70041462 Msa1210830:CDS 50.0%
CTCCAGGAGAGGGATGAAAA+TGG - chr8_1:70041480-70041499 Msa1210830:CDS 50.0%
!! AAAGCATGGTGGATCTCGTG+TGG - chr8_1:70041599-70041618 Msa1210830:intron 50.0%
CAACTCAAGGCCATGTACAC+GGG + chr8_1:70041992-70042011 None:intergenic 50.0%
CCAACTCAAGGCCATGTACA+CGG + chr8_1:70041993-70042012 None:intergenic 50.0%
!! ACATGGCCTTGAGTTGGCAT+TGG - chr8_1:70041996-70042015 Msa1210830:intron 50.0%
TGGTGCATGGTAGCAAGTGA+TGG + chr8_1:70042189-70042208 None:intergenic 50.0%
TTAGTGTGTACCTCTGCCAG+AGG + chr8_1:70042285-70042304 None:intergenic 50.0%
CAAGACTATGCCTGGTCCAT+AGG + chr8_1:70042361-70042380 None:intergenic 50.0%
CTATGGACCAGGCATAGTCT+TGG - chr8_1:70042359-70042378 Msa1210830:CDS 50.0%
GATAGTGCCAAGACTATGCC+TGG + chr8_1:70042369-70042388 None:intergenic 50.0%
AGTCTTGGCACTATCACCCA+TGG - chr8_1:70042374-70042393 Msa1210830:CDS 50.0%
GTCTTGGCACTATCACCCAT+GGG - chr8_1:70042375-70042394 Msa1210830:CDS 50.0%
AAACAAAAGGGCGGTGAGAG+GGG + chr8_1:70042922-70042941 None:intergenic 50.0%
CAAAACAAAAGGGCGGTGAG+AGG + chr8_1:70042924-70042943 None:intergenic 50.0%
!! CTCTCACCGCCCTTTTGTTT+TGG - chr8_1:70042922-70042941 Msa1210830:five_prime_UTR 50.0%
!!! CACCGCCCTTTTGTTTTGGT+TGG - chr8_1:70042926-70042945 Msa1210830:five_prime_UTR 50.0%
GTTCTGCGGTGACGACATTG+TGG + chr8_1:70039970-70039989 None:intergenic 55.0%
GATGAGTTCTGTGGCGGCAA+GGG + chr8_1:70040048-70040067 None:intergenic 55.0%
TGATGAGTTCTGTGGCGGCA+AGG + chr8_1:70040049-70040068 None:intergenic 55.0%
AGAGAGGAAAACCGGTACGG+TGG + chr8_1:70040096-70040115 None:intergenic 55.0%
CGGTGGAGTACATGCAAGAG+AGG + chr8_1:70040112-70040131 None:intergenic 55.0%
GCGAGGATCTTCGAGAGGTA+AGG + chr8_1:70040218-70040237 None:intergenic 55.0%
ACGGAGGCGACGAATTACGT+TGG + chr8_1:70040240-70040259 None:intergenic 55.0%
CGGAATTCACACACGCGGAT+CGG + chr8_1:70040280-70040299 None:intergenic 55.0%
TGTCTTGCTTCCGCGATCGA+CGG - chr8_1:70040413-70040432 Msa1210830:exon 55.0%
!!! GCTGGTGGTTTTGGCTAACG+TGG - chr8_1:70040661-70040680 Msa1210830:CDS 55.0%
TCAAGTGGCCATGGCTGATC+AGG - chr8_1:70041452-70041471 Msa1210830:CDS 55.0%
CAAGTGGCCATGGCTGATCA+GGG - chr8_1:70041453-70041472 Msa1210830:CDS 55.0%
GAGTTCACCCTGATCAGCCA+TGG + chr8_1:70041463-70041482 None:intergenic 55.0%
ATCAGGGTGAACTCCAGGAG+AGG - chr8_1:70041469-70041488 Msa1210830:CDS 55.0%
TCAGGGTGAACTCCAGGAGA+GGG - chr8_1:70041470-70041489 Msa1210830:CDS 55.0%
! CCGTGTACATGGCCTTGAGT+TGG - chr8_1:70041990-70042009 Msa1210830:intron 55.0%
GCTACCATGCACCAAACAGC+TGG - chr8_1:70042195-70042214 Msa1210830:CDS 55.0%
CAGCATTCCTGCCAGCTGTT+TGG + chr8_1:70042209-70042228 None:intergenic 55.0%
AGCCAGAGATTCAGGCTCGA+TGG - chr8_1:70042243-70042262 Msa1210830:CDS 55.0%
CTCCATCGAGCCTGAATCTC+TGG + chr8_1:70042248-70042267 None:intergenic 55.0%
CAGAGATTCAGGCTCGATGG+AGG - chr8_1:70042246-70042265 Msa1210830:CDS 55.0%
! TGCTGAAGAAGGCGTGAAGC+TGG - chr8_1:70042687-70042706 Msa1210830:CDS 55.0%
GGAATCGCCGGCAACATCTC+CGG + chr8_1:70039881-70039900 None:intergenic 60.0%
!! TCCACCGTAACCACCGACTC+CGG - chr8_1:70039933-70039952 Msa1210830:three_prime_UTR 60.0%
!! GGTTGTGAAGGTGCCGGAGT+CGG + chr8_1:70039949-70039968 None:intergenic 60.0%
AGTGTCGCGGTCGGAGAGTT+TGG + chr8_1:70040021-70040040 None:intergenic 60.0%
! AAGGGAGTGAGTGTCGCGGT+CGG + chr8_1:70040030-70040049 None:intergenic 60.0%
CCTCGACACAACCACCGTAC+CGG - chr8_1:70040082-70040101 Msa1210830:three_prime_UTR 60.0%
CGTTGGCGAGGATCTTCGAG+AGG + chr8_1:70040223-70040242 None:intergenic 60.0%
GGCGACGAATTACGTTGGCG+AGG + chr8_1:70040235-70040254 None:intergenic 60.0%
!! CCTCCGTGATACCGACTCGT+CGG - chr8_1:70040253-70040272 Msa1210830:three_prime_UTR 60.0%
GGACCGACGAGTCGGTATCA+CGG + chr8_1:70040259-70040278 None:intergenic 60.0%
GCAATCGTGATTGGGCGGTG+AGG - chr8_1:70040621-70040640 Msa1210830:CDS 60.0%
TTGGGCGGTGAGGAAAGCTG+CGG - chr8_1:70040631-70040650 Msa1210830:CDS 60.0%
GGCTGATCAGGGTGAACTCC+AGG - chr8_1:70041464-70041483 Msa1210830:CDS 60.0%
ACCACGTCGAGAGAACTGCG+GGG + chr8_1:70042160-70042179 None:intergenic 60.0%
CACCACGTCGAGAGAACTGC+GGG + chr8_1:70042161-70042180 None:intergenic 60.0%
CCACCACGTCGAGAGAACTG+CGG + chr8_1:70042162-70042181 None:intergenic 60.0%
!! CCTGCCAGCTGTTTGGTGCA+TGG + chr8_1:70042202-70042221 None:intergenic 60.0%
CCATGCACCAAACAGCTGGC+AGG - chr8_1:70042199-70042218 Msa1210830:CDS 60.0%
AAAGGGCGGTGAGAGGGGAA+GGG + chr8_1:70042917-70042936 None:intergenic 60.0%
AAAAGGGCGGTGAGAGGGGA+AGG + chr8_1:70042918-70042937 None:intergenic 60.0%
GGTGGATCGGGAGGAATCGC+CGG + chr8_1:70039893-70039912 None:intergenic 65.0%
GATTGCGGAGGTGGATCGGG+AGG + chr8_1:70039902-70039921 None:intergenic 65.0%
GGAGTCGGTGGTTACGGTGG+AGG + chr8_1:70039934-70039953 None:intergenic 65.0%
! GGTGCCGGAGTCGGTGGTTA+CGG + chr8_1:70039940-70039959 None:intergenic 65.0%
!! TGTGAAGGTGCCGGAGTCGG+TGG + chr8_1:70039946-70039965 None:intergenic 65.0%
! CGGCAAGGGAGTGAGTGTCG+CGG + chr8_1:70040034-70040053 None:intergenic 65.0%
CCGGTACGGTGGTTGTGTCG+AGG + chr8_1:70040085-70040104 None:intergenic 65.0%
CCGACGAGTCGGTATCACGG+AGG + chr8_1:70040256-70040275 None:intergenic 65.0%
TTCCGCGATCGACGGAGCTC+CGG - chr8_1:70040421-70040440 Msa1210830:exon 65.0%
ATCCGGAGCTCCGTCGATCG+CGG + chr8_1:70040426-70040445 None:intergenic 65.0%
GATCGACGGAGCTCCGGATC+CGG - chr8_1:70040427-70040446 Msa1210830:CDS 65.0%
! GTTGAAGCTGGTGGCGCGTC+CGG - chr8_1:70040551-70040570 Msa1210830:CDS 65.0%
! GGCGGAGACGCTGGTGGTTT+TGG - chr8_1:70040652-70040671 Msa1210830:CDS 65.0%
TCCCCGCAGTTCTCTCGACG+TGG - chr8_1:70042156-70042175 Msa1210830:CDS 65.0%
CCGCAGTTCTCTCGACGTGG+TGG - chr8_1:70042159-70042178 Msa1210830:CDS 65.0%
GCCGGAGTCGGTGGTTACGG+TGG + chr8_1:70039937-70039956 None:intergenic 70.0%
CGCGGATCGGACCGACGAGT+CGG + chr8_1:70040267-70040286 None:intergenic 70.0%
GGCGGTGAGGAAAGCTGCGG+CGG - chr8_1:70040634-70040653 Msa1210830:CDS 70.0%
GAAAGCTGCGGCGGAGACGC+TGG - chr8_1:70040643-70040662 Msa1210830:CDS 70.0%
AGCTGCGGCGGAGACGCTGG+TGG - chr8_1:70040646-70040665 Msa1210830:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70039670 70043079 70039670 ID=Msa1210830;Name=Msa1210830
chr8_1 mRNA 70039670 70043079 70039670 ID=Msa1210830-mRNA-1;Parent=Msa1210830;Name=Msa1210830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=302|1|1|1|1|1|4|756|602
chr8_1 exon 70039670 70040803 70039670 ID=Msa1210830-mRNA-1:exon:23421;Parent=Msa1210830-mRNA-1
chr8_1 exon 70040973 70041514 70040973 ID=Msa1210830-mRNA-1:exon:23420;Parent=Msa1210830-mRNA-1
chr8_1 exon 70041794 70041902 70041794 ID=Msa1210830-mRNA-1:exon:23419;Parent=Msa1210830-mRNA-1
chr8_1 exon 70041998 70043079 70041998 ID=Msa1210830-mRNA-1:exon:23418;Parent=Msa1210830-mRNA-1
chr8_1 five_prime_UTR 70042778 70043079 70042778 ID=Msa1210830-mRNA-1:five_prime_utr;Parent=Msa1210830-mRNA-1
chr8_1 CDS 70041998 70042777 70041998 ID=Msa1210830-mRNA-1:cds;Parent=Msa1210830-mRNA-1
chr8_1 CDS 70041794 70041902 70041794 ID=Msa1210830-mRNA-1:cds;Parent=Msa1210830-mRNA-1
chr8_1 CDS 70040973 70041514 70040973 ID=Msa1210830-mRNA-1:cds;Parent=Msa1210830-mRNA-1
chr8_1 CDS 70040426 70040803 70040426 ID=Msa1210830-mRNA-1:cds;Parent=Msa1210830-mRNA-1
chr8_1 three_prime_UTR 70039670 70040425 70039670 ID=Msa1210830-mRNA-1:three_prime_utr;Parent=Msa1210830-mRNA-1
Gene Sequence

>Msa1210830

ATGTCGTCACCGCAGAACGTAAAACAAAAGGTATTCACATGTCTAACCAAACTCTCCGACCGCGACACTCACTCCCTTGCCGCCACAGAACTCATCACGATTGCACGCAACCTCGACACAACCACCGTACCGGTTTTCCTCTCTTGCATGTACTCCACCGACGCTTCCGATAAATCTCCGGTACGGAAGCAATGCGTTCAGCTTTTCGGATTACTCTCCGAAACTCACGGTAACGCGCTTTCTCCTTACCTCTCGAAGATCCTCGCCAACGTAATTCGTCGCCTCCGTGATACCGACTCGTCGGTCCGATCCGCGTGTGTGAATTCCGTTTCTGCATTATCTTGCCACGTCACGAAGCAACCGTTTTATACCTTTCTGAAACCGTTATCAGAAGCTCTGTTCACGGAGCAAGAACAGAACGCGCAAATTGGCGCTGCACTTTGTCTTGCTTCCGCGATCGACGGAGCTCCGGATCCGGAACCTGCTAGATTAGCAAAGCTGTTGCCGAAGTTCCAGAAGCTTCTTAAGCGTGAAGTATTTAAGGCGAAATCGGCGTTATTGACGCTGATCGGAAGTGTTGTTGAAGCTGGTGGCGCGTCCGGTCACACTTCGTTGAAGAATTTGGTTCCGTGTTTGGTGGAATCGTTGAGCAATCGTGATTGGGCGGTGAGGAAAGCTGCGGCGGAGACGCTGGTGGTTTTGGCTAACGTGGAGAGGGATTTCTTATCGGAATTCAAGGCTGATTGCATGAAAGTTTTTGAGAATCGACGATTTGACAAGGTGAAGTTAGTTCGTGAAGTTATGAATCAGATGTTGGAAGCATGGAAGCATATCCCTGATGTTTCTGATGATTTTTCGCCACCTCCGAAATCACAATCTTCTTCTAAAGAGAATGCAAGTGATGGGCGGTACCCTCCTGTGTCTCAAAATTCATGTAATCCAGGTTCAGTAATGGCGAATCTAAGGAGGAGATCAGCTCCTGTTAATAGATTCAGTCCACCAGATAGTTCTACTGCTAGCAATGGCAAGAATGTGAGTTCCTTAAGTAGTAATAAGAGAAGGAGTTTGGGTGTTTCGCGAAAATTAAACCAAAAGAATTGGGATGTTCAAGTGGCCATGGCTGATCAGGGTGAACTCCAGGAGAGGGATGAAAATGGAACTCCTTTGGAAACAAGCAAAGTGAATAAAAGCAAATTTCTAAAGCCAGAAATGAATCGAGCACTATTAAATAAAAATTCTGATGATAGAATAAAAAAGCATGGTGGATCTCGTGTGGTTCCGTATCATGAAGAGAGTCAGGACTCAGTTCCTGTCAATAATGTTTCCAAAGATCTTTTTAAGAATGACAAAGAGAGTGAAGAGTTATCTTTGATCCGCAACCAGTTGCAACAAATCGAGAAGCAACAGTCGAGTCTACTTGATCTTCTGCAGAAATTCATCGGAAGCTCACAAAATGGAATGCGATCTTTAGAGACCCGTGTACATGGCCTTGAGTTGGCATTGGATGATATCTCTTATGATTTGGCTGTATCAAATGGAAGGATGACTAATTCTAATGTCCCTCGTAATTCATGTTGCTTGCTACCTGGAGCAGATTTTTTGAGCTCTAAATTCTGGAGGAAAACACAAGGCCAGTATTTATCCCCGCAGTTCTCTCGACGTGGTGGTGCGCCATCACTTGCTACCATGCACCAAACAGCTGGCAGGAATGCTGAAACTAATTTTACAAGCCAGAGATTCAGGCTCGATGGAGGTTTTATCACTAATCCTCTGGCAGAGGTACACACTAATTCAAGGAACTTTGCTTGA
Protein sequence

>Msa1210830

MSSPQNVKQKVFTCLTKLSDRDTHSLAATELITIARNLDTTTVPVFLSCMYSTDASDKSPVRKQCVQLFGLLSETHGNALSPYLSKILANVIRRLRDTDSSVRSACVNSVSALSCHVTKQPFYTFLKPLSEALFTEQEQNAQIGAALCLASAIDGAPDPEPARLAKLLPKFQKLLKREVFKAKSALLTLIGSVVEAGGASGHTSLKNLVPCLVESLSNRDWAVRKAAAETLVVLANVERDFLSEFKADCMKVFENRRFDKVKLVREVMNQMLEAWKHIPDVSDDFSPPPKSQSSSKENASDGRYPPVSQNSCNPGSVMANLRRRSAPVNRFSPPDSSTASNGKNVSSLSSNKRRSLGVSRKLNQKNWDVQVAMADQGELQERDENGTPLETSKVNKSKFLKPEMNRALLNKNSDDRIKKHGGSRVVPYHEESQDSVPVNNVSKDLFKNDKESEELSLIRNQLQQIEKQQSSLLDLLQKFIGSSQNGMRSLETRVHGLELALDDISYDLAVSNGRMTNSNVPRNSCCLLPGADFLSSKFWRKTQGQYLSPQFSRRGGAPSLATMHQTAGRNAETNFTSQRFRLDGGFITNPLAEVHTNSRNFA*