Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210840 | sp|C0SVV6|CB60A_ARATH | 48.092 | 524 | 206 | 13 | 25 | 531 | 13 | 487 | 6.74e-152 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210840 | G7JNV1 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1210160 | Msa1210840 | 0.976058 | 4.188597e-141 | -8.615850e-47 |
| Msa1210840 | Msa1396730 | 0.947206 | 1.054856e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210840 | MtrunA17_Chr4g0059411 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Msa1210840 | MtrunA17_Chr4g0048161 | 51.143 | 350 | 163 | 6 | 4 | 347 | 15 | 362 | 2.70e-115 | 355 |
| Msa1210840 | MtrunA17_Chr2g0281171 | 49.858 | 351 | 166 | 6 | 4 | 347 | 16 | 363 | 9.77e-112 | 345 |
| Msa1210840 | MtrunA17_Chr2g0304831 | 47.042 | 355 | 179 | 5 | 4 | 350 | 11 | 364 | 8.94e-106 | 329 |
| Msa1210840 | MtrunA17_Chr4g0072691 | 41.957 | 460 | 221 | 12 | 25 | 450 | 5 | 452 | 4.15e-104 | 325 |
| Msa1210840 | MtrunA17_Chr8g0391221 | 48.780 | 328 | 153 | 6 | 1 | 314 | 1 | 327 | 6.48e-98 | 305 |
| Msa1210840 | MtrunA17_Chr8g0391211 | 47.649 | 319 | 152 | 6 | 8 | 314 | 83 | 398 | 8.28e-96 | 302 |
| Msa1210840 | MtrunA17_Chr6g0484121 | 48.052 | 308 | 149 | 7 | 9 | 306 | 14 | 320 | 1.44e-88 | 281 |
| Msa1210840 | MtrunA17_Chr6g0484131 | 47.302 | 315 | 141 | 7 | 9 | 306 | 14 | 320 | 2.30e-88 | 280 |
| Msa1210840 | MtrunA17_Chr6g0484111 | 46.753 | 308 | 153 | 7 | 9 | 306 | 14 | 320 | 1.46e-86 | 276 |
| Msa1210840 | MtrunA17_Chr7g0271691 | 40.940 | 298 | 164 | 6 | 43 | 336 | 43 | 332 | 1.56e-63 | 216 |
| Msa1210840 | MtrunA17_Chr7g0271671 | 37.049 | 305 | 181 | 9 | 35 | 333 | 51 | 350 | 4.24e-45 | 167 |
| Msa1210840 | MtrunA17_Chr7g0271681 | 36.823 | 277 | 167 | 6 | 76 | 348 | 3 | 275 | 4.72e-43 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210840 | AT5G62570.1 | 47.523 | 545 | 215 | 14 | 5 | 531 | 11 | 502 | 1.21e-155 | 454 |
| Msa1210840 | AT5G62570.2 | 48.092 | 524 | 206 | 13 | 25 | 531 | 13 | 487 | 6.85e-153 | 447 |
| Msa1210840 | AT5G62570.4 | 59.322 | 354 | 139 | 3 | 5 | 357 | 11 | 360 | 2.23e-148 | 431 |
| Msa1210840 | AT5G62570.3 | 61.702 | 282 | 104 | 2 | 5 | 286 | 11 | 288 | 1.05e-121 | 360 |
| Msa1210840 | AT5G57580.1 | 51.143 | 350 | 163 | 5 | 4 | 347 | 13 | 360 | 1.14e-116 | 359 |
| Msa1210840 | AT4G25800.1 | 52.493 | 341 | 154 | 5 | 14 | 347 | 10 | 349 | 1.17e-115 | 355 |
| Msa1210840 | AT4G25800.2 | 52.493 | 341 | 154 | 5 | 14 | 347 | 10 | 349 | 1.17e-115 | 355 |
| Msa1210840 | AT2G18750.3 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1210840 | AT2G18750.2 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1210840 | AT2G18750.1 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1210840 | AT4G31000.1 | 47.198 | 339 | 171 | 4 | 13 | 347 | 21 | 355 | 1.64e-101 | 317 |
| Msa1210840 | AT2G24300.2 | 47.399 | 346 | 174 | 5 | 8 | 347 | 12 | 355 | 1.74e-101 | 318 |
| Msa1210840 | AT2G24300.3 | 47.399 | 346 | 174 | 5 | 8 | 347 | 16 | 359 | 1.92e-101 | 318 |
| Msa1210840 | AT2G24300.1 | 48.013 | 302 | 150 | 4 | 52 | 347 | 8 | 308 | 3.20e-89 | 285 |
| Msa1210840 | AT1G73805.1 | 41.525 | 354 | 195 | 6 | 9 | 357 | 13 | 359 | 2.46e-85 | 271 |
| Msa1210840 | AT5G26920.3 | 47.302 | 315 | 154 | 6 | 23 | 333 | 25 | 331 | 2.28e-83 | 266 |
| Msa1210840 | AT5G26920.1 | 47.302 | 315 | 154 | 6 | 23 | 333 | 25 | 331 | 4.44e-82 | 266 |
| Msa1210840 | AT5G26920.2 | 47.302 | 315 | 146 | 7 | 23 | 333 | 25 | 323 | 4.66e-80 | 261 |
| Msa1210840 | AT4G31000.2 | 41.818 | 330 | 159 | 4 | 32 | 347 | 24 | 334 | 7.12e-78 | 255 |
Find 149 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGTAGGATGTTTC+TGG | 0.145942 | 8_1:-70056774 | None:intergenic |
| CAAAACCTTACCTATATAAT+TGG | 0.161881 | 8_1:-70060607 | None:intergenic |
| GCACTCAACCTAGGCGATTT+TGG | 0.228829 | 8_1:+70060065 | Msa1210840:CDS |
| AGTCCGAGGCTTTCGAAATT+AGG | 0.235035 | 8_1:-70060311 | None:intergenic |
| AGACAGATTCATTTATTGTT+AGG | 0.241777 | 8_1:+70058864 | Msa1210840:CDS |
| AGTTCCACCAACTGAGTAAA+TGG | 0.274052 | 8_1:-70060264 | None:intergenic |
| CGTTTAGTTGACACCTTAAC+AGG | 0.276122 | 8_1:+70058542 | Msa1210840:CDS |
| ATATCTCTCCCTGTCTTTAC+AGG | 0.292011 | 8_1:+70058479 | Msa1210840:CDS |
| TCCACCTTAGCTGAAGATTC+AGG | 0.298970 | 8_1:-70058584 | None:intergenic |
| CCTTGTCCAACTTGAATTAT+CGG | 0.307129 | 8_1:-70058774 | None:intergenic |
| ATATTGTTCTTGAAATCTTC+AGG | 0.317472 | 8_1:-70058656 | None:intergenic |
| GATTCAATAGTCCATGCTTT+TGG | 0.319325 | 8_1:+70060395 | Msa1210840:CDS |
| CAAGTCTGTCGGATGAAGTT+TGG | 0.348712 | 8_1:+70059385 | Msa1210840:CDS |
| CCTCGGTTCTCGGAGAGCTT+GGG | 0.357039 | 8_1:-70060151 | None:intergenic |
| GACAGATTCATTTATTGTTA+GGG | 0.366738 | 8_1:+70058865 | Msa1210840:CDS |
| GTTTGGTGTAGGATGTTTCT+GGG | 0.373093 | 8_1:-70056773 | None:intergenic |
| GCGCTCGATCCCTCGGTTCT+CGG | 0.373432 | 8_1:-70060161 | None:intergenic |
| GGAGTCGTAGGTTCAGGCTT+GGG | 0.382117 | 8_1:+70058795 | Msa1210840:CDS |
| TCGAAGAAGAAAGTGACATT+TGG | 0.384160 | 8_1:+70058630 | Msa1210840:CDS |
| CCCTTGGTCATAGATGTAGA+AGG | 0.389836 | 8_1:-70060515 | None:intergenic |
| AGTGTGAATAACCATCCATT+AGG | 0.393474 | 8_1:-70060109 | None:intergenic |
| GGCTTTCTACGTTTATCATC+TGG | 0.394435 | 8_1:-70057092 | None:intergenic |
| TTGAAGAGACAAAAGCTTGT+TGG | 0.396712 | 8_1:-70060183 | None:intergenic |
| ACAATCAGTTAGGAATTTGA+TGG | 0.399948 | 8_1:+70057782 | Msa1210840:CDS |
| ACAGTCACTGACCTGCTAAA+AGG | 0.407516 | 8_1:-70057119 | None:intergenic |
| GTTGTGTTATGAAGTTTGTT+TGG | 0.413139 | 8_1:-70056790 | None:intergenic |
| CGAACCAAGGGCTCTAGAAT+TGG | 0.415707 | 8_1:-70057807 | None:intergenic |
| TGAAGATGAGGCCTCCCTAA+TGG | 0.417771 | 8_1:+70060094 | Msa1210840:CDS |
| GGTTAGAGAGGAAGTTGAAT+TGG | 0.422677 | 8_1:+70058199 | Msa1210840:intron |
| CTCTTCATCAACCACAATCA+TGG | 0.424245 | 8_1:+70056714 | Msa1210840:five_prime_UTR |
| TATGTAAATCTGCTTCAATA+TGG | 0.426831 | 8_1:-70060466 | None:intergenic |
| CTTAGATACGATCAACATCT+TGG | 0.427325 | 8_1:+70060332 | Msa1210840:CDS |
| ATCTGGTGTCTTGTTATCAT+CGG | 0.436614 | 8_1:-70057075 | None:intergenic |
| GGACAAGGAGTCGTAGGTTC+AGG | 0.437351 | 8_1:+70058789 | Msa1210840:CDS |
| AAAGAGTTGGTGACTTGGAC+TGG | 0.444825 | 8_1:-70060359 | None:intergenic |
| ACAAACAACCTTCCCTGTTA+AGG | 0.445794 | 8_1:-70058555 | None:intergenic |
| ACTAGTAGCTTGGACGACTA+TGG | 0.446998 | 8_1:+70060284 | Msa1210840:CDS |
| CAACGTTCTGAAATGGTTCA+TGG | 0.453414 | 8_1:+70060568 | Msa1210840:CDS |
| AGAGTTGTGGACAACTTTAA+CGG | 0.453745 | 8_1:+70058821 | Msa1210840:CDS |
| AGGTAGTCAACGTTCTGAAA+TGG | 0.456718 | 8_1:+70060561 | Msa1210840:CDS |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | 8_1:+70058494 | Msa1210840:CDS |
| AGACAGTAAGAATAAAAGAT+AGG | 0.465311 | 8_1:-70056961 | None:intergenic |
| AACAACGAAACCAATTATAT+AGG | 0.467623 | 8_1:+70060597 | Msa1210840:CDS |
| GTGGAAATTGTAGTCCTTGA+GGG | 0.468852 | 8_1:+70058602 | Msa1210840:CDS |
| AGGGAAAAGCTCAGAGGAGA+TGG | 0.469260 | 8_1:+70060534 | Msa1210840:CDS |
| TCTAAAAGACGGGCTTTGTA+TGG | 0.472462 | 8_1:+70058733 | Msa1210840:CDS |
| GTTTGGAGACTGGAAAAGAT+AGG | 0.473930 | 8_1:+70059402 | Msa1210840:CDS |
| GACAGTAAGAATGAAGAAAG+AGG | 0.476292 | 8_1:-70057024 | None:intergenic |
| TGATGAAGTTACAATCAGTT+AGG | 0.476619 | 8_1:+70057772 | Msa1210840:CDS |
| CTTGTTGGCGCTCGATCCCT+CGG | 0.478707 | 8_1:-70060168 | None:intergenic |
| ACAGGGAAGGTTGTTTGTAC+AGG | 0.480385 | 8_1:+70058560 | Msa1210840:CDS |
| CTTACAGTTCGCAGCTTCGC+TGG | 0.484817 | 8_1:-70059507 | None:intergenic |
| CGAAACCAATTATATAGGTA+AGG | 0.485755 | 8_1:+70060602 | Msa1210840:CDS |
| GTAAATGGATGGCATGATAT+CGG | 0.486133 | 8_1:-70060249 | None:intergenic |
| CCATCCATTTACTCAGTTGG+TGG | 0.487484 | 8_1:+70060260 | Msa1210840:CDS |
| GTGTGAATAACCATCCATTA+GGG | 0.490508 | 8_1:-70060108 | None:intergenic |
| TTGTGTATAATTGAATCCTC+CGG | 0.491833 | 8_1:-70060210 | None:intergenic |
| ATAAAATTACATCTCCTGTA+AGG | 0.493324 | 8_1:-70058709 | None:intergenic |
| CATATACCGATAATTCAAGT+TGG | 0.493774 | 8_1:+70058768 | Msa1210840:CDS |
| TTGTTAGCAGATGCTTAGTA+AGG | 0.494878 | 8_1:+70060844 | Msa1210840:three_prime_UTR |
| AAGAATGAAGAAAGAGGAGA+AGG | 0.500129 | 8_1:-70057018 | None:intergenic |
| TCTGGTGTCTTGTTATCATC+GGG | 0.501066 | 8_1:-70057074 | None:intergenic |
| CTCGGTTCTCGGAGAGCTTG+GGG | 0.503013 | 8_1:-70060150 | None:intergenic |
| GGAGCCAATTCTAGAGCCCT+TGG | 0.505109 | 8_1:+70057803 | Msa1210840:CDS |
| CAAACTTCATCCGACAGACT+TGG | 0.505825 | 8_1:-70059384 | None:intergenic |
| ATTCGAGCTCCTGTAAAGAC+AGG | 0.507114 | 8_1:-70058488 | None:intergenic |
| CTGGAAAAGATAGGCAAAGA+TGG | 0.509701 | 8_1:+70059411 | Msa1210840:CDS |
| ATGCCATCCATTTACTCAGT+TGG | 0.510710 | 8_1:+70060257 | Msa1210840:CDS |
| GTCGGATGAAGTTTGGAGAC+TGG | 0.514983 | 8_1:+70059392 | Msa1210840:CDS |
| TAAATACACCCTCCATGCAT+TGG | 0.516038 | 8_1:+70060712 | Msa1210840:three_prime_UTR |
| AGATTAAAGAGTTGGTGACT+TGG | 0.520779 | 8_1:-70060364 | None:intergenic |
| CATGTCACAGATTAAAGAGT+TGG | 0.522891 | 8_1:-70060372 | None:intergenic |
| AGCTCAGAGGAGATGGAGAA+AGG | 0.523989 | 8_1:+70060541 | Msa1210840:CDS |
| GTCATAGATGTAGAAGGTGC+CGG | 0.524024 | 8_1:-70060509 | None:intergenic |
| AATGCCGTGGGAGAAGTGAC+AGG | 0.524627 | 8_1:+70059868 | Msa1210840:CDS |
| CAAAACAGCTCTTTAACCTC+TGG | 0.534971 | 8_1:-70060748 | None:intergenic |
| CAGGCTTGGGGCAAGAGTTG+TGG | 0.535233 | 8_1:+70058808 | Msa1210840:CDS |
| CTTGGGAATGTGTAGATACT+GGG | 0.536637 | 8_1:+70059727 | Msa1210840:intron |
| TTGCCTAATTTCGAAAGCCT+CGG | 0.538472 | 8_1:+70060308 | Msa1210840:CDS |
| CTTCTTCGAAATCACCCTCA+AGG | 0.540752 | 8_1:-70058616 | None:intergenic |
| AATTACATCTCCTGTAAGGA+GGG | 0.541923 | 8_1:-70058705 | None:intergenic |
| CTTCGACTATGTCGCTCAAG+AGG | 0.542869 | 8_1:+70057048 | Msa1210840:exon |
| GCAAAGATGGAGCTTTCCAC+AGG | 0.543333 | 8_1:+70059424 | Msa1210840:CDS |
| TTATGAAGTTTGTTTGGTGT+AGG | 0.543871 | 8_1:-70056784 | None:intergenic |
| ACCTGAATCTTCAGCTAAGG+TGG | 0.544995 | 8_1:+70058583 | Msa1210840:CDS |
| AATGTGTAGATACTGGGCAC+TGG | 0.545047 | 8_1:+70059733 | Msa1210840:intron |
| ACTTCATCCGACAGACTTGG+AGG | 0.546619 | 8_1:-70059381 | None:intergenic |
| TTCGACTATGTCGCTCAAGA+GGG | 0.547656 | 8_1:+70057049 | Msa1210840:exon |
| ACCTTCTACATCTATGACCA+AGG | 0.551606 | 8_1:+70060514 | Msa1210840:CDS |
| CACGTAGTCTTCAATGCCGT+GGG | 0.551747 | 8_1:+70059856 | Msa1210840:CDS |
| AGGAGTCGTAGGTTCAGGCT+TGG | 0.554806 | 8_1:+70058794 | Msa1210840:CDS |
| GCTCGAATTGAAGGAGAAGA+TGG | 0.556383 | 8_1:+70058503 | Msa1210840:CDS |
| TCAGGCTGATGCTCAAATCT+CGG | 0.557953 | 8_1:+70060034 | Msa1210840:intron |
| AAGTAACCGTAGAGCATGCT+CGG | 0.558792 | 8_1:+70059776 | Msa1210840:CDS |
| AAAGACGGGCTTTGTATGGT+AGG | 0.569603 | 8_1:+70058737 | Msa1210840:CDS |
| ACGCGAAAGAAGAGAGTGAA+AGG | 0.569927 | 8_1:-70056670 | None:intergenic |
| CCAAGCTCTCCGAGAACCGA+GGG | 0.570483 | 8_1:+70060152 | Msa1210840:CDS |
| TGCTGTTGATAGCTTCATGC+CGG | 0.571069 | 8_1:+70060490 | Msa1210840:CDS |
| GATCTTCATCGCCAAAAGCA+TGG | 0.571117 | 8_1:-70060406 | None:intergenic |
| CAAGTTGGACAAGGAGTCGT+AGG | 0.571492 | 8_1:+70058783 | Msa1210840:CDS |
| AGAACAATATTGTGAGAGAG+AGG | 0.572757 | 8_1:+70058669 | Msa1210840:CDS |
| GACTTCTTTGCAGGTTAGAG+AGG | 0.574323 | 8_1:+70058187 | Msa1210840:intron |
| AAAATTGAAACCAAACAACA+TGG | 0.574891 | 8_1:-70056990 | None:intergenic |
| AGTTGGTGGAACTAGTAGCT+TGG | 0.575674 | 8_1:+70060274 | Msa1210840:CDS |
| TTCTGAAATGGTTCATGGTG+AGG | 0.576484 | 8_1:+70060573 | Msa1210840:CDS |
| CAACTCTTTAATCTGTGACA+TGG | 0.583895 | 8_1:+70060373 | Msa1210840:CDS |
| TCACGTAGTCTTCAATGCCG+TGG | 0.588166 | 8_1:+70059855 | Msa1210840:CDS |
| AGTTGACACCTTAACAGGGA+AGG | 0.590193 | 8_1:+70058547 | Msa1210840:CDS |
| ATGTGTAGATACTGGGCACT+GGG | 0.592570 | 8_1:+70059734 | Msa1210840:intron |
| AAATTGAAACCAAACAACAT+GGG | 0.593653 | 8_1:-70056989 | None:intergenic |
| GAGTCGTAGGTTCAGGCTTG+GGG | 0.595624 | 8_1:+70058796 | Msa1210840:CDS |
| CCACCAACTGAGTAAATGGA+TGG | 0.596205 | 8_1:-70060260 | None:intergenic |
| GGTGGAAATTGTAGTCCTTG+AGG | 0.597359 | 8_1:+70058601 | Msa1210840:CDS |
| AGGACCTGAATCTTCAGCTA+AGG | 0.600320 | 8_1:+70058580 | Msa1210840:CDS |
| CAAAAGAGCCAAAATCGCCT+AGG | 0.600379 | 8_1:-70060073 | None:intergenic |
| CCGATAATTCAAGTTGGACA+AGG | 0.600483 | 8_1:+70058774 | Msa1210840:CDS |
| TCATACCACTCGGCGAACCA+AGG | 0.600505 | 8_1:-70057820 | None:intergenic |
| CTGGGATGTCTGCAAAGATG+TGG | 0.602378 | 8_1:+70059752 | Msa1210840:CDS |
| AATTGAAACCAAACAACATG+GGG | 0.603661 | 8_1:-70056988 | None:intergenic |
| ACTGACCTGCTAAAAGGAGG+AGG | 0.606678 | 8_1:-70057113 | None:intergenic |
| AAATTACATCTCCTGTAAGG+AGG | 0.606850 | 8_1:-70058706 | None:intergenic |
| CATACCACTCGGCGAACCAA+GGG | 0.606970 | 8_1:-70057819 | None:intergenic |
| AGAGCCCTTGGTTCGCCGAG+TGG | 0.610358 | 8_1:+70057815 | Msa1210840:CDS |
| CCCAAGCTCTCCGAGAACCG+AGG | 0.613214 | 8_1:+70060151 | Msa1210840:CDS |
| ATTACATCTCCTGTAAGGAG+GGG | 0.613504 | 8_1:-70058704 | None:intergenic |
| GTCATTTCTGCACTCAACCT+AGG | 0.615671 | 8_1:+70060056 | Msa1210840:CDS |
| GATGAGGCCTCCCTAATGGA+TGG | 0.619733 | 8_1:+70060098 | Msa1210840:CDS |
| TTTCACGACTCAAACGCCTG+TGG | 0.621723 | 8_1:-70059440 | None:intergenic |
| AATATTGTGAGAGAGAGGGA+TGG | 0.622113 | 8_1:+70058674 | Msa1210840:CDS |
| GAACAATATTGTGAGAGAGA+GGG | 0.623743 | 8_1:+70058670 | Msa1210840:CDS |
| GAAAAGAATCACCATGATTG+TGG | 0.624396 | 8_1:-70056725 | None:intergenic |
| ACAAGTCCGAGCATGCTCTA+CGG | 0.625641 | 8_1:-70059782 | None:intergenic |
| TTGTCTCTTCAAAAGACCGG+AGG | 0.633128 | 8_1:+70060194 | Msa1210840:CDS |
| CAGTCCTGTCACTTCTCCCA+CGG | 0.639148 | 8_1:-70059872 | None:intergenic |
| ACACCACCCTCCAAGTCTGT+CGG | 0.639438 | 8_1:+70059374 | Msa1210840:CDS |
| CTTCATCCGACAGACTTGGA+GGG | 0.640576 | 8_1:-70059380 | None:intergenic |
| AATATTGTAGAGGACTAACA+TGG | 0.650405 | 8_1:-70060955 | None:intergenic |
| TGGGATGTCTGCAAAGATGT+GGG | 0.655279 | 8_1:+70059753 | Msa1210840:CDS |
| TTCGAGCTCCTGTAAAGACA+GGG | 0.660821 | 8_1:-70058487 | None:intergenic |
| GTCACTGACCTGCTAAAAGG+AGG | 0.661563 | 8_1:-70057116 | None:intergenic |
| CCTTCTACATCTATGACCAA+GGG | 0.672898 | 8_1:+70060515 | Msa1210840:CDS |
| TGAATAACCATCCATTAGGG+AGG | 0.673368 | 8_1:-70060105 | None:intergenic |
| GTTGATCGTATCTAAGTCCG+AGG | 0.677735 | 8_1:-70060325 | None:intergenic |
| CATCCGACAGACTTGGAGGG+TGG | 0.690633 | 8_1:-70059377 | None:intergenic |
| GTTTAGTTGACACCTTAACA+GGG | 0.693123 | 8_1:+70058543 | Msa1210840:CDS |
| TGACCAAGGGAAAAGCTCAG+AGG | 0.704879 | 8_1:+70060528 | Msa1210840:CDS |
| ACGGCATTGAAGACTACGTG+AGG | 0.714532 | 8_1:-70059853 | None:intergenic |
| TTTATTGTTAGGGATCACAG+AGG | 0.753319 | 8_1:+70058875 | Msa1210840:CDS |
| ATTGAAACCAAACAACATGG+GGG | 0.764016 | 8_1:-70056987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCATTTTTATTTAATT+GGG | + | chr8_1:70057285-70057304 | Msa1210840:intron | 10.0% |
| !! | TATTATTTAATTATCTGTTT+AGG | + | chr8_1:70059541-70059560 | Msa1210840:intron | 10.0% |
| !!! | TTATTTTTTAAATACTTTCA+TGG | + | chr8_1:70059644-70059663 | Msa1210840:intron | 10.0% |
| !!! | TATTTTTTAAATACTTTCAT+GGG | + | chr8_1:70059645-70059664 | Msa1210840:intron | 10.0% |
| !!! | GAATTGCATTTTTATTTAAT+TGG | + | chr8_1:70057284-70057303 | Msa1210840:intron | 15.0% |
| !!! | ATTGCATTTTTATTTAATTG+GGG | + | chr8_1:70057286-70057305 | Msa1210840:intron | 15.0% |
| !! | ACAGTTTATTTGATTATTAA+CGG | + | chr8_1:70057700-70057719 | Msa1210840:intron | 15.0% |
| !!! | ATGTAATATTATATGCTTTT+AGG | + | chr8_1:70057928-70057947 | Msa1210840:intron | 15.0% |
| !!! | GTAATTTTATATCTAAAAGA+CGG | + | chr8_1:70058722-70058741 | Msa1210840:CDS | 15.0% |
| !!! | TAATTTTATATCTAAAAGAC+GGG | + | chr8_1:70058723-70058742 | Msa1210840:CDS | 15.0% |
| !!! | AATTTTGATCTGAAATCAAA+TGG | + | chr8_1:70057230-70057249 | Msa1210840:intron | 20.0% |
| !!! | ATTTTGATCTGAAATCAAAT+GGG | + | chr8_1:70057231-70057250 | Msa1210840:intron | 20.0% |
| !! | CAGTTTATTTGATTATTAAC+GGG | + | chr8_1:70057701-70057720 | Msa1210840:intron | 20.0% |
| !! | GTATGAACTCTATTATATTA+CGG | + | chr8_1:70057837-70057856 | Msa1210840:intron | 20.0% |
| !!! | TGCTTTTAGGATTTTTATAA+TGG | + | chr8_1:70057941-70057960 | Msa1210840:intron | 20.0% |
| !! | CCAAAAACATAATCAATATA+TGG | - | chr8_1:70058112-70058131 | None:intergenic | 20.0% |
| !!! | CCATATATTGATTATGTTTT+TGG | + | chr8_1:70058109-70058128 | Msa1210840:intron | 20.0% |
| !!! | TATATTGATTATGTTTTTGG+AGG | + | chr8_1:70058112-70058131 | Msa1210840:intron | 20.0% |
| !! | GAAGAAAATCAATATGATAA+AGG | - | chr8_1:70059184-70059203 | None:intergenic | 20.0% |
| !!! | TATCATATTGATTTTCTTCT+TGG | + | chr8_1:70059185-70059204 | Msa1210840:intron | 20.0% |
| !!! | TAAGATATTTGTTGTAACTA+AGG | - | chr8_1:70059287-70059306 | None:intergenic | 20.0% |
| !!! | ATATTTGAGCTTTTAAAACT+TGG | + | chr8_1:70059316-70059335 | Msa1210840:intron | 20.0% |
| !! | TTTGAGAGAAGAAAAATTAT+GGG | + | chr8_1:70060674-70060693 | Msa1210840:three_prime_UTR | 20.0% |
| !!! | GTAGTTTCGTTTTTATTTGA+TGG | + | chr8_1:70056852-70056871 | Msa1210840:five_prime_UTR | 25.0% |
| ! | AGACAGTAAGAATAAAAGAT+AGG | - | chr8_1:70056964-70056983 | None:intergenic | 25.0% |
| ! | AAATTGAAACCAAACAACAT+GGG | - | chr8_1:70056992-70057011 | None:intergenic | 25.0% |
| ! | AAAATTGAAACCAAACAACA+TGG | - | chr8_1:70056993-70057012 | None:intergenic | 25.0% |
| !!! | TTTTGATCTGAAATCAAATG+GGG | + | chr8_1:70057232-70057251 | Msa1210840:intron | 25.0% |
| ! | ACCTACTTAAATTCGAAAAA+GGG | - | chr8_1:70057443-70057462 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTCTAAGGAAAA+AGG | + | chr8_1:70057466-70057485 | Msa1210840:intron | 25.0% |
| !!! | TTTCATGTTCTAAGGAAAAA+GGG | + | chr8_1:70057467-70057486 | Msa1210840:intron | 25.0% |
| ! | CAAGAATAATACACAAACAA+TGG | - | chr8_1:70057498-70057517 | None:intergenic | 25.0% |
| ! | CATTGTTTGTGTATTATTCT+TGG | + | chr8_1:70057496-70057515 | Msa1210840:intron | 25.0% |
| !!! | ACTGTTATAGTTCTAAATTG+TGG | + | chr8_1:70057528-70057547 | Msa1210840:intron | 25.0% |
| ! | AATAAACTGTGCATACAAAA+TGG | - | chr8_1:70057690-70057709 | None:intergenic | 25.0% |
| !!! | TTTGACATTTTGTTTTAGTG+TGG | + | chr8_1:70057740-70057759 | Msa1210840:intron | 25.0% |
| ! | CATAATCAATATATGGTATC+AGG | - | chr8_1:70058105-70058124 | None:intergenic | 25.0% |
| ! | CAATTATATACCAGTAAAAG+TGG | - | chr8_1:70058158-70058177 | None:intergenic | 25.0% |
| !! | AAGAAAAAGCTTTTGCTTAA+TGG | + | chr8_1:70058338-70058357 | Msa1210840:intron | 25.0% |
| !!! | ATCTTTTTTGCTTTGTTTTC+AGG | + | chr8_1:70058393-70058412 | Msa1210840:intron | 25.0% |
| ! | ATATTGTTCTTGAAATCTTC+AGG | - | chr8_1:70058659-70058678 | None:intergenic | 25.0% |
| ! | ATAAAATTACATCTCCTGTA+AGG | - | chr8_1:70058712-70058731 | None:intergenic | 25.0% |
| ! | AGACAGATTCATTTATTGTT+AGG | + | chr8_1:70058864-70058883 | Msa1210840:CDS | 25.0% |
| ! | GACAGATTCATTTATTGTTA+GGG | + | chr8_1:70058865-70058884 | Msa1210840:CDS | 25.0% |
| !!! | ATTTCACTTTTAAGAGAGTA+AGG | + | chr8_1:70059027-70059046 | Msa1210840:intron | 25.0% |
| !!! | TGTATTTTCGTTCTTGTTAT+TGG | + | chr8_1:70059233-70059252 | Msa1210840:intron | 25.0% |
| ! | AAAGTAGAAAGCTAAAAATC+TGG | + | chr8_1:70059258-70059277 | Msa1210840:intron | 25.0% |
| ! | TTTAGATAAGTACTACTAGT+TGG | + | chr8_1:70059672-70059691 | Msa1210840:intron | 25.0% |
| ! | GAATGAAAATGTGAAAAGTA+AGG | - | chr8_1:70059977-70059996 | None:intergenic | 25.0% |
| !!! | AAATTTAATTTTCCACGATC+AGG | + | chr8_1:70060016-70060035 | Msa1210840:intron | 25.0% |
| ! | TATGTAAATCTGCTTCAATA+TGG | - | chr8_1:70060469-70060488 | None:intergenic | 25.0% |
| ! | AACAACGAAACCAATTATAT+AGG | + | chr8_1:70060597-70060616 | Msa1210840:CDS | 25.0% |
| ! | CAAAACCTTACCTATATAAT+TGG | - | chr8_1:70060610-70060629 | None:intergenic | 25.0% |
| !!! | ACAGCACAATATTATTTTGT+CGG | - | chr8_1:70060655-70060674 | None:intergenic | 25.0% |
| ! | GTTTGAGAGAAGAAAAATTA+TGG | + | chr8_1:70060673-70060692 | Msa1210840:three_prime_UTR | 25.0% |
| !!! | ACTTTATCTTTTTTTCAGTC+AGG | + | chr8_1:70060808-70060827 | Msa1210840:three_prime_UTR | 25.0% |
| !! | TTCAAGATAGACTTTTATTC+TGG | + | chr8_1:70060889-70060908 | Msa1210840:three_prime_UTR | 25.0% |
| !! | TTATGAAGTTTGTTTGGTGT+AGG | - | chr8_1:70056787-70056806 | None:intergenic | 30.0% |
| ! | GTTGTGTTATGAAGTTTGTT+TGG | - | chr8_1:70056793-70056812 | None:intergenic | 30.0% |
| ! | TATCAGTTACTTCCTCTTTT+TGG | + | chr8_1:70056885-70056904 | Msa1210840:five_prime_UTR | 30.0% |
| AATTGAAACCAAACAACATG+GGG | - | chr8_1:70056991-70057010 | None:intergenic | 30.0% | |
| !!! | TTGATTGTGTTTTGAGGAAA+TGG | + | chr8_1:70057190-70057209 | Msa1210840:intron | 30.0% |
| ATTGTGAAGCGAATTAATGT+TGG | + | chr8_1:70057335-70057354 | Msa1210840:intron | 30.0% | |
| TTGTGAAGCGAATTAATGTT+GGG | + | chr8_1:70057336-70057355 | Msa1210840:intron | 30.0% | |
| !!! | TCCCTTTTTCGAATTTAAGT+AGG | + | chr8_1:70057439-70057458 | Msa1210840:intron | 30.0% |
| CACCTACTTAAATTCGAAAA+AGG | - | chr8_1:70057444-70057463 | None:intergenic | 30.0% | |
| !! | AAAATGGTTCTAAATTGCAG+TGG | - | chr8_1:70057674-70057693 | None:intergenic | 30.0% |
| TGATGAAGTTACAATCAGTT+AGG | + | chr8_1:70057772-70057791 | Msa1210840:CDS | 30.0% | |
| ACAATCAGTTAGGAATTTGA+TGG | + | chr8_1:70057782-70057801 | Msa1210840:CDS | 30.0% | |
| ATAATAGAGTTCATACCACT+CGG | - | chr8_1:70057833-70057852 | None:intergenic | 30.0% | |
| GTTGTATTGTATCCACTTTA+TGG | + | chr8_1:70058064-70058083 | Msa1210840:intron | 30.0% | |
| CAAAAAAGATGCATGAGAAA+CGG | - | chr8_1:70058383-70058402 | None:intergenic | 30.0% | |
| CATATACCGATAATTCAAGT+TGG | + | chr8_1:70058768-70058787 | Msa1210840:CDS | 30.0% | |
| ! | TTCGTTTATTATGGTTTGTG+TGG | - | chr8_1:70059073-70059092 | None:intergenic | 30.0% |
| CTACTGTTCTTCGTTTATTA+TGG | - | chr8_1:70059082-70059101 | None:intergenic | 30.0% | |
| TGATTCACATGAAAACAGTT+GGG | + | chr8_1:70059112-70059131 | Msa1210840:intron | 30.0% | |
| ! | ATATATTTGTTGCCACAAGT+TGG | + | chr8_1:70059565-70059584 | Msa1210840:intron | 30.0% |
| AAATGACAAAGTTCTTTGCT+TGG | + | chr8_1:70059709-70059728 | Msa1210840:intron | 30.0% | |
| AATGACAAAGTTCTTTGCTT+GGG | + | chr8_1:70059710-70059729 | Msa1210840:intron | 30.0% | |
| ! | ATCAGAGATAAATGCCTTTT+CGG | - | chr8_1:70059941-70059960 | None:intergenic | 30.0% |
| TGAAAAGTAAGGAAATTAGC+GGG | - | chr8_1:70059966-70059985 | None:intergenic | 30.0% | |
| GTGAAAAGTAAGGAAATTAG+CGG | - | chr8_1:70059967-70059986 | None:intergenic | 30.0% | |
| TTGTGTATAATTGAATCCTC+CGG | - | chr8_1:70060213-70060232 | None:intergenic | 30.0% | |
| CGAAACCAATTATATAGGTA+AGG | + | chr8_1:70060602-70060621 | Msa1210840:CDS | 30.0% | |
| GAAAAGAATCACCATGATTG+TGG | - | chr8_1:70056728-70056747 | None:intergenic | 35.0% | |
| TATATTGTGACGCCAAAAAG+AGG | - | chr8_1:70056900-70056919 | None:intergenic | 35.0% | |
| ATTGAAACCAAACAACATGG+GGG | - | chr8_1:70056990-70057009 | None:intergenic | 35.0% | |
| AAGAATGAAGAAAGAGGAGA+AGG | - | chr8_1:70057021-70057040 | None:intergenic | 35.0% | |
| GACAGTAAGAATGAAGAAAG+AGG | - | chr8_1:70057027-70057046 | None:intergenic | 35.0% | |
| ! | ATCTGGTGTCTTGTTATCAT+CGG | - | chr8_1:70057078-70057097 | None:intergenic | 35.0% |
| !! | TGCTGTTTGATTGTGTTTTG+AGG | + | chr8_1:70057184-70057203 | Msa1210840:intron | 35.0% |
| !!! | GTGTTTTGAGGAAATGGTAA+TGG | + | chr8_1:70057196-70057215 | Msa1210840:intron | 35.0% |
| !! | GAAATCAAATGGGGTGTTTT+TGG | + | chr8_1:70057241-70057260 | Msa1210840:intron | 35.0% |
| ATGTACTTATACTGTCGTTG+TGG | + | chr8_1:70057368-70057387 | Msa1210840:intron | 35.0% | |
| AGGTGCAATTTCATGTTCTA+AGG | + | chr8_1:70057459-70057478 | Msa1210840:intron | 35.0% | |
| GTATTGTATCCACTTTATGG+CGG | + | chr8_1:70058067-70058086 | Msa1210840:intron | 35.0% | |
| GTTTAGTTGACACCTTAACA+GGG | + | chr8_1:70058543-70058562 | Msa1210840:CDS | 35.0% | |
| TCGAAGAAGAAAGTGACATT+TGG | + | chr8_1:70058630-70058649 | Msa1210840:CDS | 35.0% | |
| AGAACAATATTGTGAGAGAG+AGG | + | chr8_1:70058669-70058688 | Msa1210840:CDS | 35.0% | |
| GAACAATATTGTGAGAGAGA+GGG | + | chr8_1:70058670-70058689 | Msa1210840:CDS | 35.0% | |
| AATTACATCTCCTGTAAGGA+GGG | - | chr8_1:70058708-70058727 | None:intergenic | 35.0% | |
| AAATTACATCTCCTGTAAGG+AGG | - | chr8_1:70058709-70058728 | None:intergenic | 35.0% | |
| CCTTGTCCAACTTGAATTAT+CGG | - | chr8_1:70058777-70058796 | None:intergenic | 35.0% | |
| AGAGTTGTGGACAACTTTAA+CGG | + | chr8_1:70058821-70058840 | Msa1210840:CDS | 35.0% | |
| TTTATTGTTAGGGATCACAG+AGG | + | chr8_1:70058875-70058894 | Msa1210840:CDS | 35.0% | |
| GAGTAAGGTTCTGTTAGAAT+AGG | + | chr8_1:70059042-70059061 | Msa1210840:intron | 35.0% | |
| GTGATTCACATGAAAACAGT+TGG | + | chr8_1:70059111-70059130 | Msa1210840:intron | 35.0% | |
| ! | TACTAGTTGGTTTCTCTCTT+TGG | + | chr8_1:70059685-70059704 | Msa1210840:intron | 35.0% |
| !!! | TTTTGGCTCTTTTGAAGATG+AGG | + | chr8_1:70060082-70060101 | Msa1210840:CDS | 35.0% |
| GTGTGAATAACCATCCATTA+GGG | - | chr8_1:70060111-70060130 | None:intergenic | 35.0% | |
| AGTGTGAATAACCATCCATT+AGG | - | chr8_1:70060112-70060131 | None:intergenic | 35.0% | |
| TTGAAGAGACAAAAGCTTGT+TGG | - | chr8_1:70060186-70060205 | None:intergenic | 35.0% | |
| ! | CTTTTGTCTCTTCAAAAGAC+CGG | + | chr8_1:70060191-70060210 | Msa1210840:CDS | 35.0% |
| GTAAATGGATGGCATGATAT+CGG | - | chr8_1:70060252-70060271 | None:intergenic | 35.0% | |
| CTTAGATACGATCAACATCT+TGG | + | chr8_1:70060332-70060351 | Msa1210840:CDS | 35.0% | |
| !! | AGATTAAAGAGTTGGTGACT+TGG | - | chr8_1:70060367-70060386 | None:intergenic | 35.0% |
| CATGTCACAGATTAAAGAGT+TGG | - | chr8_1:70060375-70060394 | None:intergenic | 35.0% | |
| CAACTCTTTAATCTGTGACA+TGG | + | chr8_1:70060373-70060392 | Msa1210840:CDS | 35.0% | |
| ! | GATTCAATAGTCCATGCTTT+TGG | + | chr8_1:70060395-70060414 | Msa1210840:CDS | 35.0% |
| !! | TCATCTGCAATTTTTCGATG+CGG | + | chr8_1:70060427-70060446 | Msa1210840:CDS | 35.0% |
| TACAAAAACCAATGCATGGA+GGG | - | chr8_1:70060723-70060742 | None:intergenic | 35.0% | |
| AAGCTACAAAAACCAATGCA+TGG | - | chr8_1:70060727-70060746 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTCAGTCAGGAG+AGG | + | chr8_1:70060813-70060832 | Msa1210840:three_prime_UTR | 35.0% |
| TTGTTAGCAGATGCTTAGTA+AGG | + | chr8_1:70060844-70060863 | Msa1210840:three_prime_UTR | 35.0% | |
| CTCTTCATCAACCACAATCA+TGG | + | chr8_1:70056714-70056733 | Msa1210840:five_prime_UTR | 40.0% | |
| !! | GTTTGGTGTAGGATGTTTCT+GGG | - | chr8_1:70056776-70056795 | None:intergenic | 40.0% |
| !! | TGTTTGGTGTAGGATGTTTC+TGG | - | chr8_1:70056777-70056796 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTTGTTATCATC+GGG | - | chr8_1:70057077-70057096 | None:intergenic | 40.0% |
| GGCTTTCTACGTTTATCATC+TGG | - | chr8_1:70057095-70057114 | None:intergenic | 40.0% | |
| TGCCAGGGATGAAATGAAAT+GGG | + | chr8_1:70057397-70057416 | Msa1210840:intron | 40.0% | |
| TTCCCATTTCATTTCATCCC+TGG | - | chr8_1:70057402-70057421 | None:intergenic | 40.0% | |
| GTGGTTGCAACTGAAATTGT+TGG | + | chr8_1:70057547-70057566 | Msa1210840:intron | 40.0% | |
| GACAAATGCATGCACAATTG+TGG | - | chr8_1:70057613-70057632 | None:intergenic | 40.0% | |
| TATTTACAGCCCACAAAGCA+TGG | - | chr8_1:70058035-70058054 | None:intergenic | 40.0% | |
| AAAGAATAGCCGCCATAAAG+TGG | - | chr8_1:70058079-70058098 | None:intergenic | 40.0% | |
| ! | CTTTATGGCGGCTATTCTTT+TGG | + | chr8_1:70058079-70058098 | Msa1210840:intron | 40.0% |
| !!! | GATTATGTTTTTGGAGGAGC+TGG | + | chr8_1:70058118-70058137 | Msa1210840:intron | 40.0% |
| !!! | GGTTTTGGTTCCACTTTTAC+TGG | + | chr8_1:70058145-70058164 | Msa1210840:intron | 40.0% |
| ATGCTATGTGACTTCTTTGC+AGG | + | chr8_1:70058178-70058197 | Msa1210840:intron | 40.0% | |
| GGTTAGAGAGGAAGTTGAAT+TGG | + | chr8_1:70058199-70058218 | Msa1210840:intron | 40.0% | |
| CATACGCAACTCGATAAATG+AGG | - | chr8_1:70058295-70058314 | None:intergenic | 40.0% | |
| !! | GAAGCAAAGGGAATGGATTA+TGG | + | chr8_1:70058314-70058333 | Msa1210840:intron | 40.0% |
| !!! | TGCTTTGTTTTCAGGACTTG+TGG | + | chr8_1:70058401-70058420 | Msa1210840:intron | 40.0% |
| !! | TGTTTTCAGGACTTGTGGAA+AGG | + | chr8_1:70058406-70058425 | Msa1210840:intron | 40.0% |
| ATATCTCTCCCTGTCTTTAC+AGG | + | chr8_1:70058479-70058498 | Msa1210840:CDS | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | + | chr8_1:70058494-70058513 | Msa1210840:CDS | 40.0% | |
| CGTTTAGTTGACACCTTAAC+AGG | + | chr8_1:70058542-70058561 | Msa1210840:CDS | 40.0% | |
| ACAAACAACCTTCCCTGTTA+AGG | - | chr8_1:70058558-70058577 | None:intergenic | 40.0% | |
| GTGGAAATTGTAGTCCTTGA+GGG | + | chr8_1:70058602-70058621 | Msa1210840:CDS | 40.0% | |
| AATATTGTGAGAGAGAGGGA+TGG | + | chr8_1:70058674-70058693 | Msa1210840:CDS | 40.0% | |
| ATTACATCTCCTGTAAGGAG+GGG | - | chr8_1:70058707-70058726 | None:intergenic | 40.0% | |
| ! | TCTAAAAGACGGGCTTTGTA+TGG | + | chr8_1:70058733-70058752 | Msa1210840:CDS | 40.0% |
| !! | CCGATAATTCAAGTTGGACA+AGG | + | chr8_1:70058774-70058793 | Msa1210840:CDS | 40.0% |
| GTTTGGAGACTGGAAAAGAT+AGG | + | chr8_1:70059402-70059421 | Msa1210840:CDS | 40.0% | |
| CTGGAAAAGATAGGCAAAGA+TGG | + | chr8_1:70059411-70059430 | Msa1210840:CDS | 40.0% | |
| TTGACATGCTTACCAACTTG+TGG | - | chr8_1:70059580-70059599 | None:intergenic | 40.0% | |
| CTTGGGAATGTGTAGATACT+GGG | + | chr8_1:70059727-70059746 | Msa1210840:intron | 40.0% | |
| ! | TAAGCTGTCTGAAACCGAAA+AGG | + | chr8_1:70059924-70059943 | Msa1210840:intron | 40.0% |
| TGAATAACCATCCATTAGGG+AGG | - | chr8_1:70060108-70060127 | None:intergenic | 40.0% | |
| ATGCCATCCATTTACTCAGT+TGG | + | chr8_1:70060257-70060276 | Msa1210840:CDS | 40.0% | |
| AGTTCCACCAACTGAGTAAA+TGG | - | chr8_1:70060267-70060286 | None:intergenic | 40.0% | |
| TTGCCTAATTTCGAAAGCCT+CGG | + | chr8_1:70060308-70060327 | Msa1210840:CDS | 40.0% | |
| ACCTTCTACATCTATGACCA+AGG | + | chr8_1:70060514-70060533 | Msa1210840:CDS | 40.0% | |
| CCTTCTACATCTATGACCAA+GGG | + | chr8_1:70060515-70060534 | Msa1210840:CDS | 40.0% | |
| !! | AGGTAGTCAACGTTCTGAAA+TGG | + | chr8_1:70060561-70060580 | Msa1210840:CDS | 40.0% |
| !! | CAACGTTCTGAAATGGTTCA+TGG | + | chr8_1:70060568-70060587 | Msa1210840:CDS | 40.0% |
| !! | TTCTGAAATGGTTCATGGTG+AGG | + | chr8_1:70060573-70060592 | Msa1210840:CDS | 40.0% |
| TAAATACACCCTCCATGCAT+TGG | + | chr8_1:70060712-70060731 | Msa1210840:three_prime_UTR | 40.0% | |
| CTACAAAAACCAATGCATGG+AGG | - | chr8_1:70060724-70060743 | None:intergenic | 40.0% | |
| CAAAACAGCTCTTTAACCTC+TGG | - | chr8_1:70060751-70060770 | None:intergenic | 40.0% | |
| ACGCGAAAGAAGAGAGTGAA+AGG | - | chr8_1:70056673-70056692 | None:intergenic | 45.0% | |
| TTCGACTATGTCGCTCAAGA+GGG | + | chr8_1:70057049-70057068 | Msa1210840:exon | 45.0% | |
| ACAGTCACTGACCTGCTAAA+AGG | - | chr8_1:70057122-70057141 | None:intergenic | 45.0% | |
| CTGCCAGGGATGAAATGAAA+TGG | + | chr8_1:70057396-70057415 | Msa1210840:intron | 45.0% | |
| TGAGTTACCACCATGCTTTG+TGG | + | chr8_1:70058022-70058041 | Msa1210840:intron | 45.0% | |
| GAGTTACCACCATGCTTTGT+GGG | + | chr8_1:70058023-70058042 | Msa1210840:intron | 45.0% | |
| !!! | TGTTTTTGGAGGAGCTGGTT+TGG | + | chr8_1:70058123-70058142 | Msa1210840:intron | 45.0% |
| !! | GTTTTTGGAGGAGCTGGTTT+GGG | + | chr8_1:70058124-70058143 | Msa1210840:intron | 45.0% |
| GACTTCTTTGCAGGTTAGAG+AGG | + | chr8_1:70058187-70058206 | Msa1210840:intron | 45.0% | |
| ! | TCGAGTTGCGTATGAAGCAA+AGG | + | chr8_1:70058301-70058320 | Msa1210840:intron | 45.0% |
| CGAGTTGCGTATGAAGCAAA+GGG | + | chr8_1:70058302-70058321 | Msa1210840:intron | 45.0% | |
| TGCGTATGAAGCAAAGGGAA+TGG | + | chr8_1:70058307-70058326 | Msa1210840:intron | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | - | chr8_1:70058490-70058509 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | - | chr8_1:70058491-70058510 | None:intergenic | 45.0% | |
| GCTCGAATTGAAGGAGAAGA+TGG | + | chr8_1:70058503-70058522 | Msa1210840:CDS | 45.0% | |
| AGTTGACACCTTAACAGGGA+AGG | + | chr8_1:70058547-70058566 | Msa1210840:CDS | 45.0% | |
| ACAGGGAAGGTTGTTTGTAC+AGG | + | chr8_1:70058560-70058579 | Msa1210840:CDS | 45.0% | |
| AGGACCTGAATCTTCAGCTA+AGG | + | chr8_1:70058580-70058599 | Msa1210840:CDS | 45.0% | |
| ACCTGAATCTTCAGCTAAGG+TGG | + | chr8_1:70058583-70058602 | Msa1210840:CDS | 45.0% | |
| TCCACCTTAGCTGAAGATTC+AGG | - | chr8_1:70058587-70058606 | None:intergenic | 45.0% | |
| GGTGGAAATTGTAGTCCTTG+AGG | + | chr8_1:70058601-70058620 | Msa1210840:CDS | 45.0% | |
| CTTCTTCGAAATCACCCTCA+AGG | - | chr8_1:70058619-70058638 | None:intergenic | 45.0% | |
| ! | AAAGACGGGCTTTGTATGGT+AGG | + | chr8_1:70058737-70058756 | Msa1210840:CDS | 45.0% |
| CAAACTTCATCCGACAGACT+TGG | - | chr8_1:70059387-70059406 | None:intergenic | 45.0% | |
| CAAGTCTGTCGGATGAAGTT+TGG | + | chr8_1:70059385-70059404 | Msa1210840:CDS | 45.0% | |
| GCTTGGGAATGTGTAGATAC+TGG | + | chr8_1:70059726-70059745 | Msa1210840:intron | 45.0% | |
| AATGTGTAGATACTGGGCAC+TGG | + | chr8_1:70059733-70059752 | Msa1210840:intron | 45.0% | |
| ATGTGTAGATACTGGGCACT+GGG | + | chr8_1:70059734-70059753 | Msa1210840:intron | 45.0% | |
| TGGGATGTCTGCAAAGATGT+GGG | + | chr8_1:70059753-70059772 | Msa1210840:CDS | 45.0% | |
| AAGTAACCGTAGAGCATGCT+CGG | + | chr8_1:70059776-70059795 | Msa1210840:CDS | 45.0% | |
| TCAGGCTGATGCTCAAATCT+CGG | + | chr8_1:70060034-70060053 | Msa1210840:intron | 45.0% | |
| GTCATTTCTGCACTCAACCT+AGG | + | chr8_1:70060056-70060075 | Msa1210840:CDS | 45.0% | |
| CAAAAGAGCCAAAATCGCCT+AGG | - | chr8_1:70060076-70060095 | None:intergenic | 45.0% | |
| TTGTCTCTTCAAAAGACCGG+AGG | + | chr8_1:70060194-70060213 | Msa1210840:CDS | 45.0% | |
| CCACCAACTGAGTAAATGGA+TGG | - | chr8_1:70060263-70060282 | None:intergenic | 45.0% | |
| CCATCCATTTACTCAGTTGG+TGG | + | chr8_1:70060260-70060279 | Msa1210840:CDS | 45.0% | |
| !! | AGTTGGTGGAACTAGTAGCT+TGG | + | chr8_1:70060274-70060293 | Msa1210840:CDS | 45.0% |
| ACTAGTAGCTTGGACGACTA+TGG | + | chr8_1:70060284-70060303 | Msa1210840:CDS | 45.0% | |
| AGTCCGAGGCTTTCGAAATT+AGG | - | chr8_1:70060314-70060333 | None:intergenic | 45.0% | |
| GTTGATCGTATCTAAGTCCG+AGG | - | chr8_1:70060328-70060347 | None:intergenic | 45.0% | |
| !! | AAAGAGTTGGTGACTTGGAC+TGG | - | chr8_1:70060362-70060381 | None:intergenic | 45.0% |
| GATCTTCATCGCCAAAAGCA+TGG | - | chr8_1:70060409-70060428 | None:intergenic | 45.0% | |
| !! | TGCTGTTGATAGCTTCATGC+CGG | + | chr8_1:70060490-70060509 | Msa1210840:CDS | 45.0% |
| ! | GTCATAGATGTAGAAGGTGC+CGG | - | chr8_1:70060512-70060531 | None:intergenic | 45.0% |
| CCCTTGGTCATAGATGTAGA+AGG | - | chr8_1:70060518-70060537 | None:intergenic | 45.0% | |
| !! | TGGTTTTTGTAGCTTGCCAG+AGG | + | chr8_1:70060732-70060751 | Msa1210840:three_prime_UTR | 45.0% |
| !!! | ATAGTTTTATTATTATATAT+TGG | + | chr8_1:70056917-70056936 | Msa1210840:five_prime_UTR | 5.0% |
| GTCTACACCCCCATGTTGTT+TGG | + | chr8_1:70056980-70056999 | Msa1210840:five_prime_UTR | 50.0% | |
| CTTCGACTATGTCGCTCAAG+AGG | + | chr8_1:70057048-70057067 | Msa1210840:exon | 50.0% | |
| TCGACTATGTCGCTCAAGAG+GGG | + | chr8_1:70057050-70057069 | Msa1210840:exon | 50.0% | |
| ! | GAAAGCCTCCTCCTTTTAGC+AGG | + | chr8_1:70057108-70057127 | Msa1210840:CDS | 50.0% |
| ACTGACCTGCTAAAAGGAGG+AGG | - | chr8_1:70057116-70057135 | None:intergenic | 50.0% | |
| GTCACTGACCTGCTAAAAGG+AGG | - | chr8_1:70057119-70057138 | None:intergenic | 50.0% | |
| TCGTTGTGGAATGTCTGCCA+GGG | + | chr8_1:70057382-70057401 | Msa1210840:intron | 50.0% | |
| !! | CGAACCAAGGGCTCTAGAAT+TGG | - | chr8_1:70057810-70057829 | None:intergenic | 50.0% |
| TTACAGCCCACAAAGCATGG+TGG | - | chr8_1:70058032-70058051 | None:intergenic | 50.0% | |
| GGAAAAAAGCCCCTCCTTAC+AGG | + | chr8_1:70058695-70058714 | Msa1210840:CDS | 50.0% | |
| ! | CAAGTTGGACAAGGAGTCGT+AGG | + | chr8_1:70058783-70058802 | Msa1210840:CDS | 50.0% |
| CTTCATCCGACAGACTTGGA+GGG | - | chr8_1:70059383-70059402 | None:intergenic | 50.0% | |
| ACTTCATCCGACAGACTTGG+AGG | - | chr8_1:70059384-70059403 | None:intergenic | 50.0% | |
| GTCGGATGAAGTTTGGAGAC+TGG | + | chr8_1:70059392-70059411 | Msa1210840:CDS | 50.0% | |
| GCAAAGATGGAGCTTTCCAC+AGG | + | chr8_1:70059424-70059443 | Msa1210840:CDS | 50.0% | |
| TTTCACGACTCAAACGCCTG+TGG | - | chr8_1:70059443-70059462 | None:intergenic | 50.0% | |
| CTGGGATGTCTGCAAAGATG+TGG | + | chr8_1:70059752-70059771 | Msa1210840:CDS | 50.0% | |
| ACAAGTCCGAGCATGCTCTA+CGG | - | chr8_1:70059785-70059804 | None:intergenic | 50.0% | |
| ! | ACGGCATTGAAGACTACGTG+AGG | - | chr8_1:70059856-70059875 | None:intergenic | 50.0% |
| TCACGTAGTCTTCAATGCCG+TGG | + | chr8_1:70059855-70059874 | Msa1210840:CDS | 50.0% | |
| CACGTAGTCTTCAATGCCGT+GGG | + | chr8_1:70059856-70059875 | Msa1210840:CDS | 50.0% | |
| TTTGAGCATCAGCCTGATCG+TGG | - | chr8_1:70060031-70060050 | None:intergenic | 50.0% | |
| ! | GCACTCAACCTAGGCGATTT+TGG | + | chr8_1:70060065-70060084 | Msa1210840:CDS | 50.0% |
| TGAAGATGAGGCCTCCCTAA+TGG | + | chr8_1:70060094-70060113 | Msa1210840:CDS | 50.0% | |
| TGACCAAGGGAAAAGCTCAG+AGG | + | chr8_1:70060528-70060547 | Msa1210840:CDS | 50.0% | |
| ! | TCTCCTCTGAGCTTTTCCCT+TGG | - | chr8_1:70060534-70060553 | None:intergenic | 50.0% |
| AGGGAAAAGCTCAGAGGAGA+TGG | + | chr8_1:70060534-70060553 | Msa1210840:CDS | 50.0% | |
| AGCTCAGAGGAGATGGAGAA+AGG | + | chr8_1:70060541-70060560 | Msa1210840:CDS | 50.0% | |
| GTCGTTGTGGAATGTCTGCC+AGG | + | chr8_1:70057381-70057400 | Msa1210840:intron | 55.0% | |
| !! | GGAGCCAATTCTAGAGCCCT+TGG | + | chr8_1:70057803-70057822 | Msa1210840:CDS | 55.0% |
| CATACCACTCGGCGAACCAA+GGG | - | chr8_1:70057822-70057841 | None:intergenic | 55.0% | |
| TCATACCACTCGGCGAACCA+AGG | - | chr8_1:70057823-70057842 | None:intergenic | 55.0% | |
| !!! | GGAGGAGCTGGTTTGGGTTT+TGG | + | chr8_1:70058130-70058149 | Msa1210840:intron | 55.0% |
| GGACAAGGAGTCGTAGGTTC+AGG | + | chr8_1:70058789-70058808 | Msa1210840:CDS | 55.0% | |
| AGGAGTCGTAGGTTCAGGCT+TGG | + | chr8_1:70058794-70058813 | Msa1210840:CDS | 55.0% | |
| GGAGTCGTAGGTTCAGGCTT+GGG | + | chr8_1:70058795-70058814 | Msa1210840:CDS | 55.0% | |
| GAGTCGTAGGTTCAGGCTTG+GGG | + | chr8_1:70058796-70058815 | Msa1210840:CDS | 55.0% | |
| ACACCACCCTCCAAGTCTGT+CGG | + | chr8_1:70059374-70059393 | Msa1210840:CDS | 55.0% | |
| CTTACAGTTCGCAGCTTCGC+TGG | - | chr8_1:70059510-70059529 | None:intergenic | 55.0% | |
| AATGCCGTGGGAGAAGTGAC+AGG | + | chr8_1:70059868-70059887 | Msa1210840:CDS | 55.0% | |
| ! | CAGTCCTGTCACTTCTCCCA+CGG | - | chr8_1:70059875-70059894 | None:intergenic | 55.0% |
| GATGAGGCCTCCCTAATGGA+TGG | + | chr8_1:70060098-70060117 | Msa1210840:CDS | 55.0% | |
| CAGGCTTGGGGCAAGAGTTG+TGG | + | chr8_1:70058808-70058827 | Msa1210840:CDS | 60.0% | |
| CATCCGACAGACTTGGAGGG+TGG | - | chr8_1:70059380-70059399 | None:intergenic | 60.0% | |
| CTCGGTTCTCGGAGAGCTTG+GGG | - | chr8_1:70060153-70060172 | None:intergenic | 60.0% | |
| CCTCGGTTCTCGGAGAGCTT+GGG | - | chr8_1:70060154-70060173 | None:intergenic | 60.0% | |
| CCAAGCTCTCCGAGAACCGA+GGG | + | chr8_1:70060152-70060171 | Msa1210840:CDS | 60.0% | |
| CTTGTTGGCGCTCGATCCCT+CGG | - | chr8_1:70060171-70060190 | None:intergenic | 60.0% | |
| ! | AGAGCCCTTGGTTCGCCGAG+TGG | + | chr8_1:70057815-70057834 | Msa1210840:CDS | 65.0% |
| CCCAAGCTCTCCGAGAACCG+AGG | + | chr8_1:70060151-70060170 | Msa1210840:CDS | 65.0% | |
| CCCTCGGTTCTCGGAGAGCT+TGG | - | chr8_1:70060155-70060174 | None:intergenic | 65.0% | |
| GCGCTCGATCCCTCGGTTCT+CGG | - | chr8_1:70060164-70060183 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 70056667 | 70060970 | 70056667 | ID=Msa1210840;Name=Msa1210840 |
| chr8_1 | mRNA | 70056667 | 70060970 | 70056667 | ID=Msa1210840-mRNA-1;Parent=Msa1210840;Name=Msa1210840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=389|0.83|0.85|1|1|1|7|348|538 |
| chr8_1 | exon | 70056667 | 70057129 | 70056667 | ID=Msa1210840-mRNA-1:exon:23395;Parent=Msa1210840-mRNA-1 |
| chr8_1 | exon | 70057758 | 70057836 | 70057758 | ID=Msa1210840-mRNA-1:exon:23396;Parent=Msa1210840-mRNA-1 |
| chr8_1 | exon | 70058200 | 70058252 | 70058200 | ID=Msa1210840-mRNA-1:exon:23397;Parent=Msa1210840-mRNA-1 |
| chr8_1 | exon | 70058415 | 70058902 | 70058415 | ID=Msa1210840-mRNA-1:exon:23398;Parent=Msa1210840-mRNA-1 |
| chr8_1 | exon | 70059364 | 70059524 | 70059364 | ID=Msa1210840-mRNA-1:exon:23399;Parent=Msa1210840-mRNA-1 |
| chr8_1 | exon | 70059742 | 70059918 | 70059742 | ID=Msa1210840-mRNA-1:exon:23400;Parent=Msa1210840-mRNA-1 |
| chr8_1 | exon | 70060038 | 70060970 | 70060038 | ID=Msa1210840-mRNA-1:exon:23401;Parent=Msa1210840-mRNA-1 |
| chr8_1 | five_prime_UTR | 70056667 | 70057055 | 70056667 | ID=Msa1210840-mRNA-1:five_prime_utr;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70057056 | 70057129 | 70057056 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70057758 | 70057836 | 70057758 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70058200 | 70058252 | 70058200 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70058415 | 70058902 | 70058415 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70059364 | 70059524 | 70059364 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70059742 | 70059918 | 70059742 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | CDS | 70060038 | 70060622 | 70060038 | ID=Msa1210840-mRNA-1:cds;Parent=Msa1210840-mRNA-1 |
| chr8_1 | three_prime_UTR | 70060623 | 70060970 | 70060623 | ID=Msa1210840-mRNA-1:three_prime_utr;Parent=Msa1210840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
