Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396730 | XP_003608957.2 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396730 | sp|C0SVV6|CB60A_ARATH | 48.092 | 524 | 206 | 13 | 25 | 531 | 13 | 487 | 6.74e-152 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396730 | G7JNV1 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1396730 | Msa1425770 | 0.888165 | 7.516745e-73 | -8.615850e-47 |
| Msa1210160 | Msa1396730 | 0.963200 | 8.547203e-122 | -8.615850e-47 |
| Msa1210840 | Msa1396730 | 0.947206 | 1.054856e-105 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396730 | MtrunA17_Chr4g0059411 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Msa1396730 | MtrunA17_Chr4g0048161 | 51.143 | 350 | 163 | 6 | 4 | 347 | 15 | 362 | 2.70e-115 | 355 |
| Msa1396730 | MtrunA17_Chr2g0281171 | 49.858 | 351 | 166 | 6 | 4 | 347 | 16 | 363 | 9.77e-112 | 345 |
| Msa1396730 | MtrunA17_Chr2g0304831 | 47.042 | 355 | 179 | 5 | 4 | 350 | 11 | 364 | 8.94e-106 | 329 |
| Msa1396730 | MtrunA17_Chr4g0072691 | 41.957 | 460 | 221 | 12 | 25 | 450 | 5 | 452 | 4.15e-104 | 325 |
| Msa1396730 | MtrunA17_Chr8g0391221 | 48.780 | 328 | 153 | 6 | 1 | 314 | 1 | 327 | 6.48e-98 | 305 |
| Msa1396730 | MtrunA17_Chr8g0391211 | 47.649 | 319 | 152 | 6 | 8 | 314 | 83 | 398 | 8.28e-96 | 302 |
| Msa1396730 | MtrunA17_Chr6g0484121 | 48.052 | 308 | 149 | 7 | 9 | 306 | 14 | 320 | 1.44e-88 | 281 |
| Msa1396730 | MtrunA17_Chr6g0484131 | 47.302 | 315 | 141 | 7 | 9 | 306 | 14 | 320 | 2.30e-88 | 280 |
| Msa1396730 | MtrunA17_Chr6g0484111 | 46.753 | 308 | 153 | 7 | 9 | 306 | 14 | 320 | 1.46e-86 | 276 |
| Msa1396730 | MtrunA17_Chr7g0271691 | 40.940 | 298 | 164 | 6 | 43 | 336 | 43 | 332 | 1.56e-63 | 216 |
| Msa1396730 | MtrunA17_Chr7g0271671 | 37.049 | 305 | 181 | 9 | 35 | 333 | 51 | 350 | 4.24e-45 | 167 |
| Msa1396730 | MtrunA17_Chr7g0271681 | 36.823 | 277 | 167 | 6 | 76 | 348 | 3 | 275 | 4.72e-43 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396730 | AT5G62570.1 | 47.523 | 545 | 215 | 14 | 5 | 531 | 11 | 502 | 1.21e-155 | 454 |
| Msa1396730 | AT5G62570.2 | 48.092 | 524 | 206 | 13 | 25 | 531 | 13 | 487 | 6.85e-153 | 447 |
| Msa1396730 | AT5G62570.4 | 59.322 | 354 | 139 | 3 | 5 | 357 | 11 | 360 | 2.23e-148 | 431 |
| Msa1396730 | AT5G62570.3 | 61.702 | 282 | 104 | 2 | 5 | 286 | 11 | 288 | 1.05e-121 | 360 |
| Msa1396730 | AT5G57580.1 | 51.143 | 350 | 163 | 5 | 4 | 347 | 13 | 360 | 1.14e-116 | 359 |
| Msa1396730 | AT4G25800.1 | 52.493 | 341 | 154 | 5 | 14 | 347 | 10 | 349 | 1.17e-115 | 355 |
| Msa1396730 | AT4G25800.2 | 52.493 | 341 | 154 | 5 | 14 | 347 | 10 | 349 | 1.17e-115 | 355 |
| Msa1396730 | AT2G18750.3 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1396730 | AT2G18750.2 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1396730 | AT2G18750.1 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1396730 | AT4G31000.1 | 47.198 | 339 | 171 | 4 | 13 | 347 | 21 | 355 | 1.64e-101 | 317 |
| Msa1396730 | AT2G24300.2 | 47.399 | 346 | 174 | 5 | 8 | 347 | 12 | 355 | 1.74e-101 | 318 |
| Msa1396730 | AT2G24300.3 | 47.399 | 346 | 174 | 5 | 8 | 347 | 16 | 359 | 1.92e-101 | 318 |
| Msa1396730 | AT2G24300.1 | 48.013 | 302 | 150 | 4 | 52 | 347 | 8 | 308 | 3.20e-89 | 285 |
| Msa1396730 | AT1G73805.1 | 41.525 | 354 | 195 | 6 | 9 | 357 | 13 | 359 | 2.46e-85 | 271 |
| Msa1396730 | AT5G26920.3 | 47.302 | 315 | 154 | 6 | 23 | 333 | 25 | 331 | 2.28e-83 | 266 |
| Msa1396730 | AT5G26920.1 | 47.302 | 315 | 154 | 6 | 23 | 333 | 25 | 331 | 4.44e-82 | 266 |
| Msa1396730 | AT5G26920.2 | 47.302 | 315 | 146 | 7 | 23 | 333 | 25 | 323 | 4.66e-80 | 261 |
| Msa1396730 | AT4G31000.2 | 41.818 | 330 | 159 | 4 | 32 | 347 | 24 | 334 | 7.12e-78 | 255 |
Find 148 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGTAGGATGTTTC+TGG | 0.145942 | tig0022059:+106551 | None:intergenic |
| CAAAACCTTACCTATATAAT+TGG | 0.161881 | tig0022059:+102715 | None:intergenic |
| GCACTCAACCTAGGCGATTT+TGG | 0.228829 | tig0022059:-103257 | Msa1396730:CDS |
| AGTCCGAGGCTTTCGAAATT+AGG | 0.235035 | tig0022059:+103011 | None:intergenic |
| AGACAGATTCATTTATTGTT+AGG | 0.241777 | tig0022059:-104458 | Msa1396730:CDS |
| AGTTCCACCAACTGAGTAAA+TGG | 0.274052 | tig0022059:+103058 | None:intergenic |
| CGTTTAGTTGACACCTTAAC+AGG | 0.276122 | tig0022059:-104780 | Msa1396730:CDS |
| ATATCTCTCCCTGTCTTTAC+AGG | 0.292011 | tig0022059:-104843 | Msa1396730:CDS |
| TCCACCTTAGCTGAAGATTC+AGG | 0.298970 | tig0022059:+104738 | None:intergenic |
| CCTTGTCCAACTTGAATTAT+CGG | 0.307129 | tig0022059:+104548 | None:intergenic |
| ATATTGTTCTTGAAATCTTC+AGG | 0.317472 | tig0022059:+104666 | None:intergenic |
| GATTCAATAGTCCATGCTTT+TGG | 0.319325 | tig0022059:-102927 | Msa1396730:CDS |
| CAAGTCTGTCGGATGAAGTT+TGG | 0.348712 | tig0022059:-103937 | Msa1396730:CDS |
| CCTCGGTTCTCGGAGAGCTT+GGG | 0.357039 | tig0022059:+103171 | None:intergenic |
| GACAGATTCATTTATTGTTA+GGG | 0.366738 | tig0022059:-104457 | Msa1396730:CDS |
| GTTTGGTGTAGGATGTTTCT+GGG | 0.373093 | tig0022059:+106552 | None:intergenic |
| GCGCTCGATCCCTCGGTTCT+CGG | 0.373432 | tig0022059:+103161 | None:intergenic |
| GGAGTCGTAGGTTCAGGCTT+GGG | 0.382117 | tig0022059:-104527 | Msa1396730:CDS |
| TCGAAGAAGAAAGTGACATT+TGG | 0.384160 | tig0022059:-104692 | Msa1396730:CDS |
| CCCTTGGTCATAGATGTAGA+AGG | 0.389836 | tig0022059:+102807 | None:intergenic |
| AGTGTGAATAACCATCCATT+AGG | 0.393474 | tig0022059:+103213 | None:intergenic |
| GGCTTTCTACGTTTATCATC+TGG | 0.394435 | tig0022059:+106230 | None:intergenic |
| TTGAAGAGACAAAAGCTTGT+TGG | 0.396712 | tig0022059:+103139 | None:intergenic |
| ACAATCAGTTAGGAATTTGA+TGG | 0.399948 | tig0022059:-105540 | Msa1396730:CDS |
| ACAGTCACTGACCTGCTAAA+AGG | 0.407516 | tig0022059:+106203 | None:intergenic |
| GTTGTGTTATGAAGTTTGTT+TGG | 0.413139 | tig0022059:+106535 | None:intergenic |
| CGAACCAAGGGCTCTAGAAT+TGG | 0.415707 | tig0022059:+105515 | None:intergenic |
| TGAAGATGAGGCCTCCCTAA+TGG | 0.417771 | tig0022059:-103228 | Msa1396730:CDS |
| GGTTAGAGAGGAAGTTGAAT+TGG | 0.422677 | tig0022059:-105123 | Msa1396730:CDS |
| CTCTTCATCAACCACAATCA+TGG | 0.424245 | tig0022059:-106630 | Msa1396730:five_prime_UTR |
| TATGTAAATCTGCTTCAATA+TGG | 0.426831 | tig0022059:+102856 | None:intergenic |
| CTTAGATACGATCAACATCT+TGG | 0.427325 | tig0022059:-102990 | Msa1396730:CDS |
| ATCTGGTGTCTTGTTATCAT+CGG | 0.436614 | tig0022059:+106247 | None:intergenic |
| GGACAAGGAGTCGTAGGTTC+AGG | 0.437351 | tig0022059:-104533 | Msa1396730:CDS |
| AAAGAGTTGGTGACTTGGAC+TGG | 0.444825 | tig0022059:+102963 | None:intergenic |
| ACAAACAACCTTCCCTGTTA+AGG | 0.445794 | tig0022059:+104767 | None:intergenic |
| ACTAGTAGCTTGGACGACTA+TGG | 0.446998 | tig0022059:-103038 | Msa1396730:CDS |
| CAACGTTCTGAAATGGTTCA+TGG | 0.453414 | tig0022059:-102754 | Msa1396730:CDS |
| AGAGTTGTGGACAACTTTAA+CGG | 0.453745 | tig0022059:-104501 | Msa1396730:CDS |
| AGGTAGTCAACGTTCTGAAA+TGG | 0.456718 | tig0022059:-102761 | Msa1396730:CDS |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | tig0022059:-104828 | Msa1396730:CDS |
| AGACAGTAAGAATAAAAGAT+AGG | 0.465311 | tig0022059:+106364 | None:intergenic |
| AACAACGAAACCAATTATAT+AGG | 0.467623 | tig0022059:-102725 | Msa1396730:CDS |
| GTGGAAATTGTAGTCCTTGA+GGG | 0.468852 | tig0022059:-104720 | Msa1396730:CDS |
| AGGGAAAAGCTCAGAGGAGA+TGG | 0.469260 | tig0022059:-102788 | Msa1396730:CDS |
| TCTAAAAGACGGGCTTTGTA+TGG | 0.472462 | tig0022059:-104589 | Msa1396730:CDS |
| GTTTGGAGACTGGAAAAGAT+AGG | 0.473930 | tig0022059:-103920 | Msa1396730:CDS |
| TGATGAAGTTACAATCAGTT+AGG | 0.476619 | tig0022059:-105550 | Msa1396730:CDS |
| CTTGTTGGCGCTCGATCCCT+CGG | 0.478707 | tig0022059:+103154 | None:intergenic |
| ACAGGGAAGGTTGTTTGTAC+AGG | 0.480385 | tig0022059:-104762 | Msa1396730:CDS |
| CTTACAGTTCGCAGCTTCGC+TGG | 0.484817 | tig0022059:+103815 | None:intergenic |
| CGAAACCAATTATATAGGTA+AGG | 0.485755 | tig0022059:-102720 | Msa1396730:exon |
| GTAAATGGATGGCATGATAT+CGG | 0.486133 | tig0022059:+103073 | None:intergenic |
| CCATCCATTTACTCAGTTGG+TGG | 0.487484 | tig0022059:-103062 | Msa1396730:CDS |
| AGTAAGAATGAAGAAGAAAG+AGG | 0.487847 | tig0022059:+106301 | None:intergenic |
| GTGTGAATAACCATCCATTA+GGG | 0.490508 | tig0022059:+103214 | None:intergenic |
| TTGTGTATAATTGAATCCTC+CGG | 0.491833 | tig0022059:+103112 | None:intergenic |
| ATAAAATTACATCTCCTGTA+AGG | 0.493324 | tig0022059:+104613 | None:intergenic |
| CATATACCGATAATTCAAGT+TGG | 0.493774 | tig0022059:-104554 | Msa1396730:CDS |
| TTGTTAGCAGATGCTTAGTA+AGG | 0.494878 | tig0022059:-102478 | Msa1396730:three_prime_UTR |
| TCTGGTGTCTTGTTATCATC+GGG | 0.501066 | tig0022059:+106248 | None:intergenic |
| AATGAAGAAGAAAGAGGAGA+AGG | 0.501517 | tig0022059:+106307 | None:intergenic |
| CTCGGTTCTCGGAGAGCTTG+GGG | 0.503013 | tig0022059:+103172 | None:intergenic |
| GGAGCCAATTCTAGAGCCCT+TGG | 0.505109 | tig0022059:-105519 | Msa1396730:CDS |
| CAAACTTCATCCGACAGACT+TGG | 0.505825 | tig0022059:+103938 | None:intergenic |
| ATTCGAGCTCCTGTAAAGAC+AGG | 0.507114 | tig0022059:+104834 | None:intergenic |
| CTGGAAAAGATAGGCAAAGA+TGG | 0.509701 | tig0022059:-103911 | Msa1396730:CDS |
| ATGCCATCCATTTACTCAGT+TGG | 0.510710 | tig0022059:-103065 | Msa1396730:CDS |
| GTCGGATGAAGTTTGGAGAC+TGG | 0.514983 | tig0022059:-103930 | Msa1396730:CDS |
| TAAATACACCCTCCATGCAT+TGG | 0.516038 | tig0022059:-102610 | Msa1396730:three_prime_UTR |
| AGATTAAAGAGTTGGTGACT+TGG | 0.520779 | tig0022059:+102958 | None:intergenic |
| CATGTCACAGATTAAAGAGT+TGG | 0.522891 | tig0022059:+102950 | None:intergenic |
| AGCTCAGAGGAGATGGAGAA+AGG | 0.523989 | tig0022059:-102781 | Msa1396730:CDS |
| GTCATAGATGTAGAAGGTGC+CGG | 0.524024 | tig0022059:+102813 | None:intergenic |
| AATGCCGTGGGAGAAGTGAC+AGG | 0.524627 | tig0022059:-103454 | Msa1396730:CDS |
| CAAAACAGCTCTTTAACCTC+TGG | 0.534971 | tig0022059:+102574 | None:intergenic |
| CAGGCTTGGGGCAAGAGTTG+TGG | 0.535233 | tig0022059:-104514 | Msa1396730:CDS |
| CTTGGGAATGTGTAGATACT+GGG | 0.536637 | tig0022059:-103595 | Msa1396730:intron |
| TTGCCTAATTTCGAAAGCCT+CGG | 0.538472 | tig0022059:-103014 | Msa1396730:CDS |
| CTTCTTCGAAATCACCCTCA+AGG | 0.540752 | tig0022059:+104706 | None:intergenic |
| AATTACATCTCCTGTAAGGA+GGG | 0.541923 | tig0022059:+104617 | None:intergenic |
| CTTCGACTATGTCGCTCAAG+AGG | 0.542869 | tig0022059:-106293 | Msa1396730:five_prime_UTR |
| GCAAAGATGGAGCTTTCCAC+AGG | 0.543333 | tig0022059:-103898 | Msa1396730:CDS |
| TTATGAAGTTTGTTTGGTGT+AGG | 0.543871 | tig0022059:+106541 | None:intergenic |
| ACCTGAATCTTCAGCTAAGG+TGG | 0.544995 | tig0022059:-104739 | Msa1396730:CDS |
| AATGTGTAGATACTGGGCAC+TGG | 0.545047 | tig0022059:-103589 | Msa1396730:intron |
| ACTTCATCCGACAGACTTGG+AGG | 0.546619 | tig0022059:+103941 | None:intergenic |
| TTCGACTATGTCGCTCAAGA+GGG | 0.547656 | tig0022059:-106292 | Msa1396730:five_prime_UTR |
| ACCTTCTACATCTATGACCA+AGG | 0.551606 | tig0022059:-102808 | Msa1396730:CDS |
| CACGTAGTCTTCAATGCCGT+GGG | 0.551747 | tig0022059:-103466 | Msa1396730:CDS |
| AGGAGTCGTAGGTTCAGGCT+TGG | 0.554806 | tig0022059:-104528 | Msa1396730:CDS |
| GCTCGAATTGAAGGAGAAGA+TGG | 0.556383 | tig0022059:-104819 | Msa1396730:CDS |
| TCAGGCTGATGCTCAAATCT+CGG | 0.557953 | tig0022059:-103288 | Msa1396730:intron |
| AAGTAACCGTAGAGCATGCT+CGG | 0.558792 | tig0022059:-103546 | Msa1396730:CDS |
| AAAGACGGGCTTTGTATGGT+AGG | 0.569603 | tig0022059:-104585 | Msa1396730:CDS |
| CCAAGCTCTCCGAGAACCGA+GGG | 0.570483 | tig0022059:-103170 | Msa1396730:CDS |
| TGCTGTTGATAGCTTCATGC+CGG | 0.571069 | tig0022059:-102832 | Msa1396730:CDS |
| GATCTTCATCGCCAAAAGCA+TGG | 0.571117 | tig0022059:+102916 | None:intergenic |
| CAAGTTGGACAAGGAGTCGT+AGG | 0.571492 | tig0022059:-104539 | Msa1396730:CDS |
| AGAACAATATTGTGAGAGAG+AGG | 0.572757 | tig0022059:-104653 | Msa1396730:CDS |
| GACTTCTTTGCAGGTTAGAG+AGG | 0.574323 | tig0022059:-105135 | Msa1396730:intron |
| AAAATTGAAACCAAACAACA+TGG | 0.574891 | tig0022059:+106335 | None:intergenic |
| AGTTGGTGGAACTAGTAGCT+TGG | 0.575674 | tig0022059:-103048 | Msa1396730:CDS |
| TTCTGAAATGGTTCATGGTG+AGG | 0.576484 | tig0022059:-102749 | Msa1396730:CDS |
| CAACTCTTTAATCTGTGACA+TGG | 0.583895 | tig0022059:-102949 | Msa1396730:CDS |
| TCACGTAGTCTTCAATGCCG+TGG | 0.588166 | tig0022059:-103467 | Msa1396730:CDS |
| AGTTGACACCTTAACAGGGA+AGG | 0.590193 | tig0022059:-104775 | Msa1396730:CDS |
| ATGTGTAGATACTGGGCACT+GGG | 0.592570 | tig0022059:-103588 | Msa1396730:intron |
| AAATTGAAACCAAACAACAT+GGG | 0.593653 | tig0022059:+106336 | None:intergenic |
| GAGTCGTAGGTTCAGGCTTG+GGG | 0.595624 | tig0022059:-104526 | Msa1396730:CDS |
| CCACCAACTGAGTAAATGGA+TGG | 0.596205 | tig0022059:+103062 | None:intergenic |
| GGTGGAAATTGTAGTCCTTG+AGG | 0.597359 | tig0022059:-104721 | Msa1396730:CDS |
| AGGACCTGAATCTTCAGCTA+AGG | 0.600320 | tig0022059:-104742 | Msa1396730:CDS |
| CAAAAGAGCCAAAATCGCCT+AGG | 0.600379 | tig0022059:+103249 | None:intergenic |
| CCGATAATTCAAGTTGGACA+AGG | 0.600483 | tig0022059:-104548 | Msa1396730:CDS |
| TCATACCACTCGGCGAACCA+AGG | 0.600505 | tig0022059:+105502 | None:intergenic |
| CTGGGATGTCTGCAAAGATG+TGG | 0.602378 | tig0022059:-103570 | Msa1396730:CDS |
| AATTGAAACCAAACAACATG+GGG | 0.603661 | tig0022059:+106337 | None:intergenic |
| ACTGACCTGCTAAAAGGAGG+AGG | 0.606678 | tig0022059:+106209 | None:intergenic |
| AAATTACATCTCCTGTAAGG+AGG | 0.606850 | tig0022059:+104616 | None:intergenic |
| CATACCACTCGGCGAACCAA+GGG | 0.606970 | tig0022059:+105503 | None:intergenic |
| AGAGCCCTTGGTTCGCCGAG+TGG | 0.610358 | tig0022059:-105507 | Msa1396730:intron |
| CCCAAGCTCTCCGAGAACCG+AGG | 0.613214 | tig0022059:-103171 | Msa1396730:CDS |
| ATTACATCTCCTGTAAGGAG+GGG | 0.613504 | tig0022059:+104618 | None:intergenic |
| GTCATTTCTGCACTCAACCT+AGG | 0.615671 | tig0022059:-103266 | Msa1396730:CDS |
| GATGAGGCCTCCCTAATGGA+TGG | 0.619733 | tig0022059:-103224 | Msa1396730:CDS |
| TTTCACGACTCAAACGCCTG+TGG | 0.621723 | tig0022059:+103882 | None:intergenic |
| AATATTGTGAGAGAGAGGGA+TGG | 0.622113 | tig0022059:-104648 | Msa1396730:CDS |
| GAACAATATTGTGAGAGAGA+GGG | 0.623743 | tig0022059:-104652 | Msa1396730:CDS |
| GAAAAGAATCACCATGATTG+TGG | 0.624396 | tig0022059:+106600 | None:intergenic |
| ACAAGTCCGAGCATGCTCTA+CGG | 0.625641 | tig0022059:+103540 | None:intergenic |
| TTGTCTCTTCAAAAGACCGG+AGG | 0.633128 | tig0022059:-103128 | Msa1396730:CDS |
| CAGTCCTGTCACTTCTCCCA+CGG | 0.639148 | tig0022059:+103450 | None:intergenic |
| ACACCACCCTCCAAGTCTGT+CGG | 0.639438 | tig0022059:-103948 | Msa1396730:CDS |
| CTTCATCCGACAGACTTGGA+GGG | 0.640576 | tig0022059:+103942 | None:intergenic |
| AATATTGTAGAGGACTAACA+TGG | 0.650405 | tig0022059:+102367 | None:intergenic |
| TGGGATGTCTGCAAAGATGT+GGG | 0.655279 | tig0022059:-103569 | Msa1396730:CDS |
| TTCGAGCTCCTGTAAAGACA+GGG | 0.660821 | tig0022059:+104835 | None:intergenic |
| GTCACTGACCTGCTAAAAGG+AGG | 0.661563 | tig0022059:+106206 | None:intergenic |
| CCTTCTACATCTATGACCAA+GGG | 0.672898 | tig0022059:-102807 | Msa1396730:CDS |
| TGAATAACCATCCATTAGGG+AGG | 0.673368 | tig0022059:+103217 | None:intergenic |
| GTTGATCGTATCTAAGTCCG+AGG | 0.677735 | tig0022059:+102997 | None:intergenic |
| CATCCGACAGACTTGGAGGG+TGG | 0.690633 | tig0022059:+103945 | None:intergenic |
| GTTTAGTTGACACCTTAACA+GGG | 0.693123 | tig0022059:-104779 | Msa1396730:CDS |
| TGACCAAGGGAAAAGCTCAG+AGG | 0.704879 | tig0022059:-102794 | Msa1396730:CDS |
| ACGGCATTGAAGACTACGTG+AGG | 0.714532 | tig0022059:+103469 | None:intergenic |
| TTTATTGTTAGGGATCACAG+AGG | 0.753319 | tig0022059:-104447 | Msa1396730:CDS |
| ATTGAAACCAAACAACATGG+GGG | 0.764016 | tig0022059:+106338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCATTTTTATTTAATT+GGG | - | tig0022059:102979-102998 | Msa1396730:CDS | 10.0% |
| !! | TATTATTTAATTATCTGTTT+AGG | - | tig0022059:105235-105254 | Msa1396730:intron | 10.0% |
| !!! | TTATTTTTTAAATACTTTCA+TGG | - | tig0022059:105338-105357 | Msa1396730:intron | 10.0% |
| !!! | TATTTTTTAAATACTTTCAT+GGG | - | tig0022059:105339-105358 | Msa1396730:intron | 10.0% |
| !!! | GAATTGCATTTTTATTTAAT+TGG | - | tig0022059:102978-102997 | Msa1396730:CDS | 15.0% |
| !!! | ATTGCATTTTTATTTAATTG+GGG | - | tig0022059:102980-102999 | Msa1396730:CDS | 15.0% |
| !! | ACAGTTTATTTGATTATTAA+CGG | - | tig0022059:103394-103413 | Msa1396730:intron | 15.0% |
| !!! | ATGTAATATTATATGCTTTT+AGG | - | tig0022059:103622-103641 | Msa1396730:intron | 15.0% |
| !!! | GTAATTTTATATCTAAAAGA+CGG | - | tig0022059:104416-104435 | Msa1396730:intron | 15.0% |
| !!! | TAATTTTATATCTAAAAGAC+GGG | - | tig0022059:104417-104436 | Msa1396730:intron | 15.0% |
| !!! | AATTTTGATCTGAAATCAAA+TGG | - | tig0022059:102924-102943 | Msa1396730:CDS | 20.0% |
| !!! | ATTTTGATCTGAAATCAAAT+GGG | - | tig0022059:102925-102944 | Msa1396730:CDS | 20.0% |
| !! | CAGTTTATTTGATTATTAAC+GGG | - | tig0022059:103395-103414 | Msa1396730:intron | 20.0% |
| !! | GTATGAACTCTATTATATTA+CGG | - | tig0022059:103531-103550 | Msa1396730:CDS | 20.0% |
| !!! | TGCTTTTAGGATTTTTATAA+TGG | - | tig0022059:103635-103654 | Msa1396730:intron | 20.0% |
| !! | CCAAAAACATAATCAATATA+TGG | + | tig0022059:103806-103825 | None:intergenic | 20.0% |
| !!! | CCATATATTGATTATGTTTT+TGG | - | tig0022059:103803-103822 | Msa1396730:intron | 20.0% |
| !!! | TATATTGATTATGTTTTTGG+AGG | - | tig0022059:103806-103825 | Msa1396730:intron | 20.0% |
| !! | GAAGAAAATCAATATGATAA+AGG | + | tig0022059:104878-104897 | None:intergenic | 20.0% |
| !!! | TATCATATTGATTTTCTTCT+TGG | - | tig0022059:104879-104898 | Msa1396730:CDS | 20.0% |
| !!! | TAAGATATTTGTTGTAACTA+AGG | + | tig0022059:104981-105000 | None:intergenic | 20.0% |
| !!! | ATATTTGAGCTTTTAAAACT+TGG | - | tig0022059:105010-105029 | Msa1396730:intron | 20.0% |
| !! | TTTGAGAGAAGAAAAATTAT+GGG | - | tig0022059:106368-106387 | Msa1396730:five_prime_UTR | 20.0% |
| !!! | GTAGTTTCGTTTTTATTTGA+TGG | - | tig0022059:102543-102562 | Msa1396730:three_prime_UTR | 25.0% |
| ! | AGACAGTAAGAATAAAAGAT+AGG | + | tig0022059:102655-102674 | None:intergenic | 25.0% |
| ! | AAATTGAAACCAAACAACAT+GGG | + | tig0022059:102683-102702 | None:intergenic | 25.0% |
| ! | AAAATTGAAACCAAACAACA+TGG | + | tig0022059:102684-102703 | None:intergenic | 25.0% |
| !!! | TTTTGATCTGAAATCAAATG+GGG | - | tig0022059:102926-102945 | Msa1396730:CDS | 25.0% |
| ! | ACCTACTTAAATTCGAAAAA+GGG | + | tig0022059:103137-103156 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTCTAAGGAAAA+AGG | - | tig0022059:103160-103179 | Msa1396730:CDS | 25.0% |
| !!! | TTTCATGTTCTAAGGAAAAA+GGG | - | tig0022059:103161-103180 | Msa1396730:CDS | 25.0% |
| ! | CAAGAATAATACACAAACAA+TGG | + | tig0022059:103192-103211 | None:intergenic | 25.0% |
| ! | CATTGTTTGTGTATTATTCT+TGG | - | tig0022059:103190-103209 | Msa1396730:CDS | 25.0% |
| !!! | ACTGTTATAGTTCTAAATTG+TGG | - | tig0022059:103222-103241 | Msa1396730:CDS | 25.0% |
| ! | AATAAACTGTGCATACAAAA+TGG | + | tig0022059:103384-103403 | None:intergenic | 25.0% |
| !!! | TTTGACATTTTGTTTTAGTG+TGG | - | tig0022059:103434-103453 | Msa1396730:CDS | 25.0% |
| ! | CATAATCAATATATGGTATC+AGG | + | tig0022059:103799-103818 | None:intergenic | 25.0% |
| ! | CAATTATATACCAGTAAAAG+TGG | + | tig0022059:103852-103871 | None:intergenic | 25.0% |
| !! | AAGAAAAAGCTTTTGCTTAA+TGG | - | tig0022059:104032-104051 | Msa1396730:intron | 25.0% |
| !!! | ATCTTTTTTGCTTTGTTTTC+AGG | - | tig0022059:104087-104106 | Msa1396730:intron | 25.0% |
| ! | ATATTGTTCTTGAAATCTTC+AGG | + | tig0022059:104353-104372 | None:intergenic | 25.0% |
| ! | ATAAAATTACATCTCCTGTA+AGG | + | tig0022059:104406-104425 | None:intergenic | 25.0% |
| ! | AGACAGATTCATTTATTGTT+AGG | - | tig0022059:104558-104577 | Msa1396730:CDS | 25.0% |
| ! | GACAGATTCATTTATTGTTA+GGG | - | tig0022059:104559-104578 | Msa1396730:CDS | 25.0% |
| !!! | ATTTCACTTTTAAGAGAGTA+AGG | - | tig0022059:104721-104740 | Msa1396730:CDS | 25.0% |
| !!! | TGTATTTTCGTTCTTGTTAT+TGG | - | tig0022059:104927-104946 | Msa1396730:intron | 25.0% |
| ! | AAAGTAGAAAGCTAAAAATC+TGG | - | tig0022059:104952-104971 | Msa1396730:intron | 25.0% |
| ! | TTTAGATAAGTACTACTAGT+TGG | - | tig0022059:105366-105385 | Msa1396730:intron | 25.0% |
| ! | GAATGAAAATGTGAAAAGTA+AGG | + | tig0022059:105671-105690 | None:intergenic | 25.0% |
| !!! | AAATTTAATTTTCCACGATC+AGG | - | tig0022059:105710-105729 | Msa1396730:intron | 25.0% |
| ! | TATGTAAATCTGCTTCAATA+TGG | + | tig0022059:106163-106182 | None:intergenic | 25.0% |
| ! | AACAACGAAACCAATTATAT+AGG | - | tig0022059:106291-106310 | Msa1396730:five_prime_UTR | 25.0% |
| ! | CAAAACCTTACCTATATAAT+TGG | + | tig0022059:106304-106323 | None:intergenic | 25.0% |
| !!! | ACAGCACAATATTATTTTGT+CGG | + | tig0022059:106349-106368 | None:intergenic | 25.0% |
| ! | GTTTGAGAGAAGAAAAATTA+TGG | - | tig0022059:106367-106386 | Msa1396730:five_prime_UTR | 25.0% |
| !!! | ACTTTATCTTTTTTTCAGTC+AGG | - | tig0022059:106502-106521 | Msa1396730:five_prime_UTR | 25.0% |
| !! | TTCAAGATAGACTTTTATTC+TGG | - | tig0022059:106583-106602 | Msa1396730:five_prime_UTR | 25.0% |
| !! | TTATGAAGTTTGTTTGGTGT+AGG | + | tig0022059:102478-102497 | None:intergenic | 30.0% |
| ! | GTTGTGTTATGAAGTTTGTT+TGG | + | tig0022059:102484-102503 | None:intergenic | 30.0% |
| ! | TATCAGTTACTTCCTCTTTT+TGG | - | tig0022059:102576-102595 | Msa1396730:three_prime_UTR | 30.0% |
| AATTGAAACCAAACAACATG+GGG | + | tig0022059:102682-102701 | None:intergenic | 30.0% | |
| AGTAAGAATGAAGAAGAAAG+AGG | + | tig0022059:102718-102737 | None:intergenic | 30.0% | |
| !!! | TTGATTGTGTTTTGAGGAAA+TGG | - | tig0022059:102884-102903 | Msa1396730:CDS | 30.0% |
| ATTGTGAAGCGAATTAATGT+TGG | - | tig0022059:103029-103048 | Msa1396730:CDS | 30.0% | |
| TTGTGAAGCGAATTAATGTT+GGG | - | tig0022059:103030-103049 | Msa1396730:CDS | 30.0% | |
| !!! | TCCCTTTTTCGAATTTAAGT+AGG | - | tig0022059:103133-103152 | Msa1396730:CDS | 30.0% |
| CACCTACTTAAATTCGAAAA+AGG | + | tig0022059:103138-103157 | None:intergenic | 30.0% | |
| !! | AAAATGGTTCTAAATTGCAG+TGG | + | tig0022059:103368-103387 | None:intergenic | 30.0% |
| TGATGAAGTTACAATCAGTT+AGG | - | tig0022059:103466-103485 | Msa1396730:CDS | 30.0% | |
| ACAATCAGTTAGGAATTTGA+TGG | - | tig0022059:103476-103495 | Msa1396730:CDS | 30.0% | |
| ATAATAGAGTTCATACCACT+CGG | + | tig0022059:103527-103546 | None:intergenic | 30.0% | |
| GTTGTATTGTATCCACTTTA+TGG | - | tig0022059:103758-103777 | Msa1396730:intron | 30.0% | |
| CAAAAAAGATGCATGAGAAA+CGG | + | tig0022059:104077-104096 | None:intergenic | 30.0% | |
| CATATACCGATAATTCAAGT+TGG | - | tig0022059:104462-104481 | Msa1396730:CDS | 30.0% | |
| ! | TTCGTTTATTATGGTTTGTG+TGG | + | tig0022059:104767-104786 | None:intergenic | 30.0% |
| CTACTGTTCTTCGTTTATTA+TGG | + | tig0022059:104776-104795 | None:intergenic | 30.0% | |
| TGATTCACATGAAAACAGTT+GGG | - | tig0022059:104806-104825 | Msa1396730:CDS | 30.0% | |
| ! | ATATATTTGTTGCCACAAGT+TGG | - | tig0022059:105259-105278 | Msa1396730:intron | 30.0% |
| AAATGACAAAGTTCTTTGCT+TGG | - | tig0022059:105403-105422 | Msa1396730:intron | 30.0% | |
| AATGACAAAGTTCTTTGCTT+GGG | - | tig0022059:105404-105423 | Msa1396730:intron | 30.0% | |
| ! | ATCAGAGATAAATGCCTTTT+CGG | + | tig0022059:105635-105654 | None:intergenic | 30.0% |
| TGAAAAGTAAGGAAATTAGC+GGG | + | tig0022059:105660-105679 | None:intergenic | 30.0% | |
| GTGAAAAGTAAGGAAATTAG+CGG | + | tig0022059:105661-105680 | None:intergenic | 30.0% | |
| TTGTGTATAATTGAATCCTC+CGG | + | tig0022059:105907-105926 | None:intergenic | 30.0% | |
| CGAAACCAATTATATAGGTA+AGG | - | tig0022059:106296-106315 | Msa1396730:five_prime_UTR | 30.0% | |
| GAAAAGAATCACCATGATTG+TGG | + | tig0022059:102419-102438 | None:intergenic | 35.0% | |
| TATATTGTGACGCCAAAAAG+AGG | + | tig0022059:102591-102610 | None:intergenic | 35.0% | |
| ATTGAAACCAAACAACATGG+GGG | + | tig0022059:102681-102700 | None:intergenic | 35.0% | |
| AATGAAGAAGAAAGAGGAGA+AGG | + | tig0022059:102712-102731 | None:intergenic | 35.0% | |
| ! | ATCTGGTGTCTTGTTATCAT+CGG | + | tig0022059:102772-102791 | None:intergenic | 35.0% |
| !! | TGCTGTTTGATTGTGTTTTG+AGG | - | tig0022059:102878-102897 | Msa1396730:CDS | 35.0% |
| !!! | GTGTTTTGAGGAAATGGTAA+TGG | - | tig0022059:102890-102909 | Msa1396730:CDS | 35.0% |
| !! | GAAATCAAATGGGGTGTTTT+TGG | - | tig0022059:102935-102954 | Msa1396730:CDS | 35.0% |
| ATGTACTTATACTGTCGTTG+TGG | - | tig0022059:103062-103081 | Msa1396730:CDS | 35.0% | |
| AGGTGCAATTTCATGTTCTA+AGG | - | tig0022059:103153-103172 | Msa1396730:CDS | 35.0% | |
| GTATTGTATCCACTTTATGG+CGG | - | tig0022059:103761-103780 | Msa1396730:intron | 35.0% | |
| GTTTAGTTGACACCTTAACA+GGG | - | tig0022059:104237-104256 | Msa1396730:intron | 35.0% | |
| TCGAAGAAGAAAGTGACATT+TGG | - | tig0022059:104324-104343 | Msa1396730:intron | 35.0% | |
| AGAACAATATTGTGAGAGAG+AGG | - | tig0022059:104363-104382 | Msa1396730:intron | 35.0% | |
| GAACAATATTGTGAGAGAGA+GGG | - | tig0022059:104364-104383 | Msa1396730:intron | 35.0% | |
| AATTACATCTCCTGTAAGGA+GGG | + | tig0022059:104402-104421 | None:intergenic | 35.0% | |
| AAATTACATCTCCTGTAAGG+AGG | + | tig0022059:104403-104422 | None:intergenic | 35.0% | |
| CCTTGTCCAACTTGAATTAT+CGG | + | tig0022059:104471-104490 | None:intergenic | 35.0% | |
| AGAGTTGTGGACAACTTTAA+CGG | - | tig0022059:104515-104534 | Msa1396730:CDS | 35.0% | |
| TTTATTGTTAGGGATCACAG+AGG | - | tig0022059:104569-104588 | Msa1396730:CDS | 35.0% | |
| GAGTAAGGTTCTGTTAGAAT+AGG | - | tig0022059:104736-104755 | Msa1396730:CDS | 35.0% | |
| GTGATTCACATGAAAACAGT+TGG | - | tig0022059:104805-104824 | Msa1396730:CDS | 35.0% | |
| ! | TACTAGTTGGTTTCTCTCTT+TGG | - | tig0022059:105379-105398 | Msa1396730:intron | 35.0% |
| !!! | TTTTGGCTCTTTTGAAGATG+AGG | - | tig0022059:105776-105795 | Msa1396730:intron | 35.0% |
| GTGTGAATAACCATCCATTA+GGG | + | tig0022059:105805-105824 | None:intergenic | 35.0% | |
| AGTGTGAATAACCATCCATT+AGG | + | tig0022059:105806-105825 | None:intergenic | 35.0% | |
| TTGAAGAGACAAAAGCTTGT+TGG | + | tig0022059:105880-105899 | None:intergenic | 35.0% | |
| ! | CTTTTGTCTCTTCAAAAGAC+CGG | - | tig0022059:105885-105904 | Msa1396730:intron | 35.0% |
| GTAAATGGATGGCATGATAT+CGG | + | tig0022059:105946-105965 | None:intergenic | 35.0% | |
| CTTAGATACGATCAACATCT+TGG | - | tig0022059:106026-106045 | Msa1396730:intron | 35.0% | |
| !! | AGATTAAAGAGTTGGTGACT+TGG | + | tig0022059:106061-106080 | None:intergenic | 35.0% |
| CATGTCACAGATTAAAGAGT+TGG | + | tig0022059:106069-106088 | None:intergenic | 35.0% | |
| CAACTCTTTAATCTGTGACA+TGG | - | tig0022059:106067-106086 | Msa1396730:intron | 35.0% | |
| ! | GATTCAATAGTCCATGCTTT+TGG | - | tig0022059:106089-106108 | Msa1396730:intron | 35.0% |
| !! | TCATCTGCAATTTTTCGATG+CGG | - | tig0022059:106121-106140 | Msa1396730:intron | 35.0% |
| TACAAAAACCAATGCATGGA+GGG | + | tig0022059:106417-106436 | None:intergenic | 35.0% | |
| AAGCTACAAAAACCAATGCA+TGG | + | tig0022059:106421-106440 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTCAGTCAGGAG+AGG | - | tig0022059:106507-106526 | Msa1396730:five_prime_UTR | 35.0% |
| TTGTTAGCAGATGCTTAGTA+AGG | - | tig0022059:106538-106557 | Msa1396730:five_prime_UTR | 35.0% | |
| CTCTTCATCAACCACAATCA+TGG | - | tig0022059:102405-102424 | Msa1396730:three_prime_UTR | 40.0% | |
| !! | GTTTGGTGTAGGATGTTTCT+GGG | + | tig0022059:102467-102486 | None:intergenic | 40.0% |
| !! | TGTTTGGTGTAGGATGTTTC+TGG | + | tig0022059:102468-102487 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTTGTTATCATC+GGG | + | tig0022059:102771-102790 | None:intergenic | 40.0% |
| GGCTTTCTACGTTTATCATC+TGG | + | tig0022059:102789-102808 | None:intergenic | 40.0% | |
| TGCCAGGGATGAAATGAAAT+GGG | - | tig0022059:103091-103110 | Msa1396730:CDS | 40.0% | |
| TTCCCATTTCATTTCATCCC+TGG | + | tig0022059:103096-103115 | None:intergenic | 40.0% | |
| GTGGTTGCAACTGAAATTGT+TGG | - | tig0022059:103241-103260 | Msa1396730:CDS | 40.0% | |
| GACAAATGCATGCACAATTG+TGG | + | tig0022059:103307-103326 | None:intergenic | 40.0% | |
| TATTTACAGCCCACAAAGCA+TGG | + | tig0022059:103729-103748 | None:intergenic | 40.0% | |
| AAAGAATAGCCGCCATAAAG+TGG | + | tig0022059:103773-103792 | None:intergenic | 40.0% | |
| ! | CTTTATGGCGGCTATTCTTT+TGG | - | tig0022059:103773-103792 | Msa1396730:intron | 40.0% |
| !!! | GATTATGTTTTTGGAGGAGC+TGG | - | tig0022059:103812-103831 | Msa1396730:intron | 40.0% |
| !!! | GGTTTTGGTTCCACTTTTAC+TGG | - | tig0022059:103839-103858 | Msa1396730:CDS | 40.0% |
| ATGCTATGTGACTTCTTTGC+AGG | - | tig0022059:103872-103891 | Msa1396730:CDS | 40.0% | |
| GGTTAGAGAGGAAGTTGAAT+TGG | - | tig0022059:103893-103912 | Msa1396730:CDS | 40.0% | |
| CATACGCAACTCGATAAATG+AGG | + | tig0022059:103989-104008 | None:intergenic | 40.0% | |
| !! | GAAGCAAAGGGAATGGATTA+TGG | - | tig0022059:104008-104027 | Msa1396730:intron | 40.0% |
| !!! | TGCTTTGTTTTCAGGACTTG+TGG | - | tig0022059:104095-104114 | Msa1396730:intron | 40.0% |
| !! | TGTTTTCAGGACTTGTGGAA+AGG | - | tig0022059:104100-104119 | Msa1396730:intron | 40.0% |
| ATATCTCTCCCTGTCTTTAC+AGG | - | tig0022059:104173-104192 | Msa1396730:intron | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | - | tig0022059:104188-104207 | Msa1396730:intron | 40.0% | |
| CGTTTAGTTGACACCTTAAC+AGG | - | tig0022059:104236-104255 | Msa1396730:intron | 40.0% | |
| ACAAACAACCTTCCCTGTTA+AGG | + | tig0022059:104252-104271 | None:intergenic | 40.0% | |
| GTGGAAATTGTAGTCCTTGA+GGG | - | tig0022059:104296-104315 | Msa1396730:intron | 40.0% | |
| AATATTGTGAGAGAGAGGGA+TGG | - | tig0022059:104368-104387 | Msa1396730:intron | 40.0% | |
| ATTACATCTCCTGTAAGGAG+GGG | + | tig0022059:104401-104420 | None:intergenic | 40.0% | |
| ! | TCTAAAAGACGGGCTTTGTA+TGG | - | tig0022059:104427-104446 | Msa1396730:intron | 40.0% |
| !! | CCGATAATTCAAGTTGGACA+AGG | - | tig0022059:104468-104487 | Msa1396730:CDS | 40.0% |
| GTTTGGAGACTGGAAAAGAT+AGG | - | tig0022059:105096-105115 | Msa1396730:CDS | 40.0% | |
| CTGGAAAAGATAGGCAAAGA+TGG | - | tig0022059:105105-105124 | Msa1396730:CDS | 40.0% | |
| TTGACATGCTTACCAACTTG+TGG | + | tig0022059:105274-105293 | None:intergenic | 40.0% | |
| CTTGGGAATGTGTAGATACT+GGG | - | tig0022059:105421-105440 | Msa1396730:intron | 40.0% | |
| ! | TAAGCTGTCTGAAACCGAAA+AGG | - | tig0022059:105618-105637 | Msa1396730:intron | 40.0% |
| TGAATAACCATCCATTAGGG+AGG | + | tig0022059:105802-105821 | None:intergenic | 40.0% | |
| ATGCCATCCATTTACTCAGT+TGG | - | tig0022059:105951-105970 | Msa1396730:intron | 40.0% | |
| AGTTCCACCAACTGAGTAAA+TGG | + | tig0022059:105961-105980 | None:intergenic | 40.0% | |
| TTGCCTAATTTCGAAAGCCT+CGG | - | tig0022059:106002-106021 | Msa1396730:intron | 40.0% | |
| ACCTTCTACATCTATGACCA+AGG | - | tig0022059:106208-106227 | Msa1396730:intron | 40.0% | |
| CCTTCTACATCTATGACCAA+GGG | - | tig0022059:106209-106228 | Msa1396730:intron | 40.0% | |
| !! | AGGTAGTCAACGTTCTGAAA+TGG | - | tig0022059:106255-106274 | Msa1396730:CDS | 40.0% |
| !! | CAACGTTCTGAAATGGTTCA+TGG | - | tig0022059:106262-106281 | Msa1396730:CDS | 40.0% |
| !! | TTCTGAAATGGTTCATGGTG+AGG | - | tig0022059:106267-106286 | Msa1396730:CDS | 40.0% |
| TAAATACACCCTCCATGCAT+TGG | - | tig0022059:106406-106425 | Msa1396730:five_prime_UTR | 40.0% | |
| CTACAAAAACCAATGCATGG+AGG | + | tig0022059:106418-106437 | None:intergenic | 40.0% | |
| CAAAACAGCTCTTTAACCTC+TGG | + | tig0022059:106445-106464 | None:intergenic | 40.0% | |
| TTCGACTATGTCGCTCAAGA+GGG | - | tig0022059:102743-102762 | Msa1396730:CDS | 45.0% | |
| ACAGTCACTGACCTGCTAAA+AGG | + | tig0022059:102816-102835 | None:intergenic | 45.0% | |
| CTGCCAGGGATGAAATGAAA+TGG | - | tig0022059:103090-103109 | Msa1396730:CDS | 45.0% | |
| TGAGTTACCACCATGCTTTG+TGG | - | tig0022059:103716-103735 | Msa1396730:intron | 45.0% | |
| GAGTTACCACCATGCTTTGT+GGG | - | tig0022059:103717-103736 | Msa1396730:intron | 45.0% | |
| !!! | TGTTTTTGGAGGAGCTGGTT+TGG | - | tig0022059:103817-103836 | Msa1396730:intron | 45.0% |
| !! | GTTTTTGGAGGAGCTGGTTT+GGG | - | tig0022059:103818-103837 | Msa1396730:intron | 45.0% |
| GACTTCTTTGCAGGTTAGAG+AGG | - | tig0022059:103881-103900 | Msa1396730:CDS | 45.0% | |
| ! | TCGAGTTGCGTATGAAGCAA+AGG | - | tig0022059:103995-104014 | Msa1396730:intron | 45.0% |
| CGAGTTGCGTATGAAGCAAA+GGG | - | tig0022059:103996-104015 | Msa1396730:intron | 45.0% | |
| TGCGTATGAAGCAAAGGGAA+TGG | - | tig0022059:104001-104020 | Msa1396730:intron | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | + | tig0022059:104184-104203 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | + | tig0022059:104185-104204 | None:intergenic | 45.0% | |
| GCTCGAATTGAAGGAGAAGA+TGG | - | tig0022059:104197-104216 | Msa1396730:intron | 45.0% | |
| AGTTGACACCTTAACAGGGA+AGG | - | tig0022059:104241-104260 | Msa1396730:intron | 45.0% | |
| ACAGGGAAGGTTGTTTGTAC+AGG | - | tig0022059:104254-104273 | Msa1396730:intron | 45.0% | |
| AGGACCTGAATCTTCAGCTA+AGG | - | tig0022059:104274-104293 | Msa1396730:intron | 45.0% | |
| ACCTGAATCTTCAGCTAAGG+TGG | - | tig0022059:104277-104296 | Msa1396730:intron | 45.0% | |
| TCCACCTTAGCTGAAGATTC+AGG | + | tig0022059:104281-104300 | None:intergenic | 45.0% | |
| GGTGGAAATTGTAGTCCTTG+AGG | - | tig0022059:104295-104314 | Msa1396730:intron | 45.0% | |
| CTTCTTCGAAATCACCCTCA+AGG | + | tig0022059:104313-104332 | None:intergenic | 45.0% | |
| ! | AAAGACGGGCTTTGTATGGT+AGG | - | tig0022059:104431-104450 | Msa1396730:intron | 45.0% |
| CAAACTTCATCCGACAGACT+TGG | + | tig0022059:105081-105100 | None:intergenic | 45.0% | |
| CAAGTCTGTCGGATGAAGTT+TGG | - | tig0022059:105079-105098 | Msa1396730:intron | 45.0% | |
| GCTTGGGAATGTGTAGATAC+TGG | - | tig0022059:105420-105439 | Msa1396730:intron | 45.0% | |
| AATGTGTAGATACTGGGCAC+TGG | - | tig0022059:105427-105446 | Msa1396730:intron | 45.0% | |
| ATGTGTAGATACTGGGCACT+GGG | - | tig0022059:105428-105447 | Msa1396730:intron | 45.0% | |
| TGGGATGTCTGCAAAGATGT+GGG | - | tig0022059:105447-105466 | Msa1396730:intron | 45.0% | |
| AAGTAACCGTAGAGCATGCT+CGG | - | tig0022059:105470-105489 | Msa1396730:intron | 45.0% | |
| TCAGGCTGATGCTCAAATCT+CGG | - | tig0022059:105728-105747 | Msa1396730:intron | 45.0% | |
| GTCATTTCTGCACTCAACCT+AGG | - | tig0022059:105750-105769 | Msa1396730:intron | 45.0% | |
| CAAAAGAGCCAAAATCGCCT+AGG | + | tig0022059:105770-105789 | None:intergenic | 45.0% | |
| TTGTCTCTTCAAAAGACCGG+AGG | - | tig0022059:105888-105907 | Msa1396730:intron | 45.0% | |
| CCACCAACTGAGTAAATGGA+TGG | + | tig0022059:105957-105976 | None:intergenic | 45.0% | |
| CCATCCATTTACTCAGTTGG+TGG | - | tig0022059:105954-105973 | Msa1396730:intron | 45.0% | |
| !! | AGTTGGTGGAACTAGTAGCT+TGG | - | tig0022059:105968-105987 | Msa1396730:intron | 45.0% |
| ACTAGTAGCTTGGACGACTA+TGG | - | tig0022059:105978-105997 | Msa1396730:intron | 45.0% | |
| AGTCCGAGGCTTTCGAAATT+AGG | + | tig0022059:106008-106027 | None:intergenic | 45.0% | |
| GTTGATCGTATCTAAGTCCG+AGG | + | tig0022059:106022-106041 | None:intergenic | 45.0% | |
| !! | AAAGAGTTGGTGACTTGGAC+TGG | + | tig0022059:106056-106075 | None:intergenic | 45.0% |
| GATCTTCATCGCCAAAAGCA+TGG | + | tig0022059:106103-106122 | None:intergenic | 45.0% | |
| !! | TGCTGTTGATAGCTTCATGC+CGG | - | tig0022059:106184-106203 | Msa1396730:intron | 45.0% |
| ! | GTCATAGATGTAGAAGGTGC+CGG | + | tig0022059:106206-106225 | None:intergenic | 45.0% |
| CCCTTGGTCATAGATGTAGA+AGG | + | tig0022059:106212-106231 | None:intergenic | 45.0% | |
| !! | TGGTTTTTGTAGCTTGCCAG+AGG | - | tig0022059:106426-106445 | Msa1396730:five_prime_UTR | 45.0% |
| !!! | ATAGTTTTATTATTATATAT+TGG | - | tig0022059:102608-102627 | Msa1396730:three_prime_UTR | 5.0% |
| GTCTACACCCCCATGTTGTT+TGG | - | tig0022059:102671-102690 | Msa1396730:three_prime_UTR | 50.0% | |
| CTTCGACTATGTCGCTCAAG+AGG | - | tig0022059:102742-102761 | Msa1396730:CDS | 50.0% | |
| TCGACTATGTCGCTCAAGAG+GGG | - | tig0022059:102744-102763 | Msa1396730:CDS | 50.0% | |
| ! | GAAAGCCTCCTCCTTTTAGC+AGG | - | tig0022059:102802-102821 | Msa1396730:CDS | 50.0% |
| ACTGACCTGCTAAAAGGAGG+AGG | + | tig0022059:102810-102829 | None:intergenic | 50.0% | |
| GTCACTGACCTGCTAAAAGG+AGG | + | tig0022059:102813-102832 | None:intergenic | 50.0% | |
| TCGTTGTGGAATGTCTGCCA+GGG | - | tig0022059:103076-103095 | Msa1396730:CDS | 50.0% | |
| !! | CGAACCAAGGGCTCTAGAAT+TGG | + | tig0022059:103504-103523 | None:intergenic | 50.0% |
| TTACAGCCCACAAAGCATGG+TGG | + | tig0022059:103726-103745 | None:intergenic | 50.0% | |
| GGAAAAAAGCCCCTCCTTAC+AGG | - | tig0022059:104389-104408 | Msa1396730:intron | 50.0% | |
| ! | CAAGTTGGACAAGGAGTCGT+AGG | - | tig0022059:104477-104496 | Msa1396730:CDS | 50.0% |
| CTTCATCCGACAGACTTGGA+GGG | + | tig0022059:105077-105096 | None:intergenic | 50.0% | |
| ACTTCATCCGACAGACTTGG+AGG | + | tig0022059:105078-105097 | None:intergenic | 50.0% | |
| GTCGGATGAAGTTTGGAGAC+TGG | - | tig0022059:105086-105105 | Msa1396730:intron | 50.0% | |
| GCAAAGATGGAGCTTTCCAC+AGG | - | tig0022059:105118-105137 | Msa1396730:CDS | 50.0% | |
| TTTCACGACTCAAACGCCTG+TGG | + | tig0022059:105137-105156 | None:intergenic | 50.0% | |
| CTGGGATGTCTGCAAAGATG+TGG | - | tig0022059:105446-105465 | Msa1396730:intron | 50.0% | |
| ACAAGTCCGAGCATGCTCTA+CGG | + | tig0022059:105479-105498 | None:intergenic | 50.0% | |
| ! | ACGGCATTGAAGACTACGTG+AGG | + | tig0022059:105550-105569 | None:intergenic | 50.0% |
| TCACGTAGTCTTCAATGCCG+TGG | - | tig0022059:105549-105568 | Msa1396730:CDS | 50.0% | |
| CACGTAGTCTTCAATGCCGT+GGG | - | tig0022059:105550-105569 | Msa1396730:CDS | 50.0% | |
| TTTGAGCATCAGCCTGATCG+TGG | + | tig0022059:105725-105744 | None:intergenic | 50.0% | |
| ! | GCACTCAACCTAGGCGATTT+TGG | - | tig0022059:105759-105778 | Msa1396730:intron | 50.0% |
| TGAAGATGAGGCCTCCCTAA+TGG | - | tig0022059:105788-105807 | Msa1396730:intron | 50.0% | |
| TGACCAAGGGAAAAGCTCAG+AGG | - | tig0022059:106222-106241 | Msa1396730:CDS | 50.0% | |
| ! | TCTCCTCTGAGCTTTTCCCT+TGG | + | tig0022059:106228-106247 | None:intergenic | 50.0% |
| AGGGAAAAGCTCAGAGGAGA+TGG | - | tig0022059:106228-106247 | Msa1396730:CDS | 50.0% | |
| AGCTCAGAGGAGATGGAGAA+AGG | - | tig0022059:106235-106254 | Msa1396730:CDS | 50.0% | |
| GTCGTTGTGGAATGTCTGCC+AGG | - | tig0022059:103075-103094 | Msa1396730:CDS | 55.0% | |
| !! | GGAGCCAATTCTAGAGCCCT+TGG | - | tig0022059:103497-103516 | Msa1396730:CDS | 55.0% |
| CATACCACTCGGCGAACCAA+GGG | + | tig0022059:103516-103535 | None:intergenic | 55.0% | |
| TCATACCACTCGGCGAACCA+AGG | + | tig0022059:103517-103536 | None:intergenic | 55.0% | |
| !!! | GGAGGAGCTGGTTTGGGTTT+TGG | - | tig0022059:103824-103843 | Msa1396730:CDS | 55.0% |
| GGACAAGGAGTCGTAGGTTC+AGG | - | tig0022059:104483-104502 | Msa1396730:CDS | 55.0% | |
| AGGAGTCGTAGGTTCAGGCT+TGG | - | tig0022059:104488-104507 | Msa1396730:CDS | 55.0% | |
| GGAGTCGTAGGTTCAGGCTT+GGG | - | tig0022059:104489-104508 | Msa1396730:CDS | 55.0% | |
| GAGTCGTAGGTTCAGGCTTG+GGG | - | tig0022059:104490-104509 | Msa1396730:CDS | 55.0% | |
| ACACCACCCTCCAAGTCTGT+CGG | - | tig0022059:105068-105087 | Msa1396730:intron | 55.0% | |
| CTTACAGTTCGCAGCTTCGC+TGG | + | tig0022059:105204-105223 | None:intergenic | 55.0% | |
| AATGCCGTGGGAGAAGTGAC+AGG | - | tig0022059:105562-105581 | Msa1396730:CDS | 55.0% | |
| ! | CAGTCCTGTCACTTCTCCCA+CGG | + | tig0022059:105569-105588 | None:intergenic | 55.0% |
| GATGAGGCCTCCCTAATGGA+TGG | - | tig0022059:105792-105811 | Msa1396730:intron | 55.0% | |
| CAGGCTTGGGGCAAGAGTTG+TGG | - | tig0022059:104502-104521 | Msa1396730:CDS | 60.0% | |
| CATCCGACAGACTTGGAGGG+TGG | + | tig0022059:105074-105093 | None:intergenic | 60.0% | |
| CTCGGTTCTCGGAGAGCTTG+GGG | + | tig0022059:105847-105866 | None:intergenic | 60.0% | |
| CCTCGGTTCTCGGAGAGCTT+GGG | + | tig0022059:105848-105867 | None:intergenic | 60.0% | |
| CCAAGCTCTCCGAGAACCGA+GGG | - | tig0022059:105846-105865 | Msa1396730:intron | 60.0% | |
| CTTGTTGGCGCTCGATCCCT+CGG | + | tig0022059:105865-105884 | None:intergenic | 60.0% | |
| ! | AGAGCCCTTGGTTCGCCGAG+TGG | - | tig0022059:103509-103528 | Msa1396730:CDS | 65.0% |
| CCCAAGCTCTCCGAGAACCG+AGG | - | tig0022059:105845-105864 | Msa1396730:intron | 65.0% | |
| CCCTCGGTTCTCGGAGAGCT+TGG | + | tig0022059:105849-105868 | None:intergenic | 65.0% | |
| GCGCTCGATCCCTCGGTTCT+CGG | + | tig0022059:105858-105877 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022059 | gene | 102374 | 106664 | 102374 | ID=Msa1396730;Name=Msa1396730 |
| tig0022059 | mRNA | 102374 | 106664 | 102374 | ID=Msa1396730-mRNA-1;Parent=Msa1396730;Name=Msa1396730-mRNA-1;_AED=0.10;_eAED=0.10;_QI=376|0.83|0.85|1|1|1|7|348|538 |
| tig0022059 | exon | 102374 | 103306 | 102374 | ID=Msa1396730-mRNA-1:exon:15639;Parent=Msa1396730-mRNA-1 |
| tig0022059 | exon | 103426 | 103602 | 103426 | ID=Msa1396730-mRNA-1:exon:15638;Parent=Msa1396730-mRNA-1 |
| tig0022059 | exon | 103820 | 103980 | 103820 | ID=Msa1396730-mRNA-1:exon:15637;Parent=Msa1396730-mRNA-1 |
| tig0022059 | exon | 104442 | 104929 | 104442 | ID=Msa1396730-mRNA-1:exon:15636;Parent=Msa1396730-mRNA-1 |
| tig0022059 | exon | 105092 | 105144 | 105092 | ID=Msa1396730-mRNA-1:exon:15635;Parent=Msa1396730-mRNA-1 |
| tig0022059 | exon | 105508 | 105586 | 105508 | ID=Msa1396730-mRNA-1:exon:15634;Parent=Msa1396730-mRNA-1 |
| tig0022059 | exon | 106215 | 106664 | 106215 | ID=Msa1396730-mRNA-1:exon:15633;Parent=Msa1396730-mRNA-1 |
| tig0022059 | five_prime_UTR | 106289 | 106664 | 106289 | ID=Msa1396730-mRNA-1:five_prime_utr;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 106215 | 106288 | 106215 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 105508 | 105586 | 105508 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 105092 | 105144 | 105092 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 104442 | 104929 | 104442 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 103820 | 103980 | 103820 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 103426 | 103602 | 103426 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | CDS | 102722 | 103306 | 102722 | ID=Msa1396730-mRNA-1:cds;Parent=Msa1396730-mRNA-1 |
| tig0022059 | three_prime_UTR | 102374 | 102721 | 102374 | ID=Msa1396730-mRNA-1:three_prime_utr;Parent=Msa1396730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
