Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210160 | XP_003608957.2 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210160 | sp|C0SVV6|CB60A_ARATH | 48.092 | 524 | 206 | 13 | 25 | 531 | 13 | 487 | 6.74e-152 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210160 | G7JNV1 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1210160 | Msa1210840 | 0.976058 | 4.188597e-141 | -8.615850e-47 |
| Msa1210160 | Msa1396730 | 0.963200 | 8.547203e-122 | -8.615850e-47 |
| Msa1210160 | Msa1425770 | 0.805045 | 1.613489e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210160 | MtrunA17_Chr4g0059411 | 95.795 | 547 | 14 | 1 | 1 | 538 | 1 | 547 | 0.0 | 1082 |
| Msa1210160 | MtrunA17_Chr4g0048161 | 51.143 | 350 | 163 | 6 | 4 | 347 | 15 | 362 | 2.70e-115 | 355 |
| Msa1210160 | MtrunA17_Chr2g0281171 | 49.858 | 351 | 166 | 6 | 4 | 347 | 16 | 363 | 9.77e-112 | 345 |
| Msa1210160 | MtrunA17_Chr2g0304831 | 47.042 | 355 | 179 | 5 | 4 | 350 | 11 | 364 | 8.94e-106 | 329 |
| Msa1210160 | MtrunA17_Chr4g0072691 | 41.957 | 460 | 221 | 12 | 25 | 450 | 5 | 452 | 4.15e-104 | 325 |
| Msa1210160 | MtrunA17_Chr8g0391221 | 48.780 | 328 | 153 | 6 | 1 | 314 | 1 | 327 | 6.48e-98 | 305 |
| Msa1210160 | MtrunA17_Chr8g0391211 | 47.649 | 319 | 152 | 6 | 8 | 314 | 83 | 398 | 8.28e-96 | 302 |
| Msa1210160 | MtrunA17_Chr6g0484121 | 48.052 | 308 | 149 | 7 | 9 | 306 | 14 | 320 | 1.44e-88 | 281 |
| Msa1210160 | MtrunA17_Chr6g0484131 | 47.302 | 315 | 141 | 7 | 9 | 306 | 14 | 320 | 2.30e-88 | 280 |
| Msa1210160 | MtrunA17_Chr6g0484111 | 46.753 | 308 | 153 | 7 | 9 | 306 | 14 | 320 | 1.46e-86 | 276 |
| Msa1210160 | MtrunA17_Chr7g0271691 | 40.940 | 298 | 164 | 6 | 43 | 336 | 43 | 332 | 1.56e-63 | 216 |
| Msa1210160 | MtrunA17_Chr7g0271671 | 37.049 | 305 | 181 | 9 | 35 | 333 | 51 | 350 | 4.24e-45 | 167 |
| Msa1210160 | MtrunA17_Chr7g0271681 | 36.823 | 277 | 167 | 6 | 76 | 348 | 3 | 275 | 4.72e-43 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210160 | AT5G62570.1 | 47.523 | 545 | 215 | 14 | 5 | 531 | 11 | 502 | 1.21e-155 | 454 |
| Msa1210160 | AT5G62570.2 | 48.092 | 524 | 206 | 13 | 25 | 531 | 13 | 487 | 6.85e-153 | 447 |
| Msa1210160 | AT5G62570.4 | 59.322 | 354 | 139 | 3 | 5 | 357 | 11 | 360 | 2.23e-148 | 431 |
| Msa1210160 | AT5G62570.3 | 61.702 | 282 | 104 | 2 | 5 | 286 | 11 | 288 | 1.05e-121 | 360 |
| Msa1210160 | AT5G57580.1 | 51.143 | 350 | 163 | 5 | 4 | 347 | 13 | 360 | 1.14e-116 | 359 |
| Msa1210160 | AT4G25800.1 | 52.493 | 341 | 154 | 5 | 14 | 347 | 10 | 349 | 1.17e-115 | 355 |
| Msa1210160 | AT4G25800.2 | 52.493 | 341 | 154 | 5 | 14 | 347 | 10 | 349 | 1.17e-115 | 355 |
| Msa1210160 | AT2G18750.3 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1210160 | AT2G18750.2 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1210160 | AT2G18750.1 | 47.328 | 393 | 180 | 10 | 18 | 388 | 32 | 419 | 1.51e-109 | 340 |
| Msa1210160 | AT4G31000.1 | 47.198 | 339 | 171 | 4 | 13 | 347 | 21 | 355 | 1.64e-101 | 317 |
| Msa1210160 | AT2G24300.2 | 47.399 | 346 | 174 | 5 | 8 | 347 | 12 | 355 | 1.74e-101 | 318 |
| Msa1210160 | AT2G24300.3 | 47.399 | 346 | 174 | 5 | 8 | 347 | 16 | 359 | 1.92e-101 | 318 |
| Msa1210160 | AT2G24300.1 | 48.013 | 302 | 150 | 4 | 52 | 347 | 8 | 308 | 3.20e-89 | 285 |
| Msa1210160 | AT1G73805.1 | 41.525 | 354 | 195 | 6 | 9 | 357 | 13 | 359 | 2.46e-85 | 271 |
| Msa1210160 | AT5G26920.3 | 47.302 | 315 | 154 | 6 | 23 | 333 | 25 | 331 | 2.28e-83 | 266 |
| Msa1210160 | AT5G26920.1 | 47.302 | 315 | 154 | 6 | 23 | 333 | 25 | 331 | 4.44e-82 | 266 |
| Msa1210160 | AT5G26920.2 | 47.302 | 315 | 146 | 7 | 23 | 333 | 25 | 323 | 4.66e-80 | 261 |
| Msa1210160 | AT4G31000.2 | 41.818 | 330 | 159 | 4 | 32 | 347 | 24 | 334 | 7.12e-78 | 255 |
Find 149 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGTAGGATGTTTC+TGG | 0.145942 | 8_1:+68911154 | None:intergenic |
| CAAAACCTTACCTATATAAT+TGG | 0.161881 | 8_1:+68907321 | None:intergenic |
| GCACTCAACCTAGGCGATTT+TGG | 0.228829 | 8_1:-68907863 | Msa1210160:CDS |
| AGTCCGAGGCTTTCGAAATT+AGG | 0.235035 | 8_1:+68907617 | None:intergenic |
| AGACAGATTCATTTATTGTT+AGG | 0.241777 | 8_1:-68909064 | Msa1210160:CDS |
| AGTTCCACCAACTGAGTAAA+TGG | 0.274052 | 8_1:+68907664 | None:intergenic |
| CGTTTAGTTGACACCTTAAC+AGG | 0.276122 | 8_1:-68909386 | Msa1210160:CDS |
| ATATCTCTCCCTGTCTTTAC+AGG | 0.292011 | 8_1:-68909449 | Msa1210160:CDS |
| TCCACCTTAGCTGAAGATTC+AGG | 0.298970 | 8_1:+68909344 | None:intergenic |
| CCTTGTCCAACTTGAATTAT+CGG | 0.307129 | 8_1:+68909154 | None:intergenic |
| ATATTGTTCTTGAAATCTTC+AGG | 0.317472 | 8_1:+68909272 | None:intergenic |
| GATTCAATAGTCCATGCTTT+TGG | 0.319325 | 8_1:-68907533 | Msa1210160:CDS |
| CAAGTCTGTCGGATGAAGTT+TGG | 0.348712 | 8_1:-68908543 | Msa1210160:CDS |
| CCTCGGTTCTCGGAGAGCTT+GGG | 0.357039 | 8_1:+68907777 | None:intergenic |
| GACAGATTCATTTATTGTTA+GGG | 0.366738 | 8_1:-68909063 | Msa1210160:CDS |
| GTTTGGTGTAGGATGTTTCT+GGG | 0.373093 | 8_1:+68911155 | None:intergenic |
| GCGCTCGATCCCTCGGTTCT+CGG | 0.373432 | 8_1:+68907767 | None:intergenic |
| GGAGTCGTAGGTTCAGGCTT+GGG | 0.382117 | 8_1:-68909133 | Msa1210160:CDS |
| TCGAAGAAGAAAGTGACATT+TGG | 0.384160 | 8_1:-68909298 | Msa1210160:CDS |
| CCCTTGGTCATAGATGTAGA+AGG | 0.389836 | 8_1:+68907413 | None:intergenic |
| AGTGTGAATAACCATCCATT+AGG | 0.393474 | 8_1:+68907819 | None:intergenic |
| GGCTTTCTACGTTTATCATC+TGG | 0.394435 | 8_1:+68910836 | None:intergenic |
| TTGAAGAGACAAAAGCTTGT+TGG | 0.396712 | 8_1:+68907745 | None:intergenic |
| ACAATCAGTTAGGAATTTGA+TGG | 0.399948 | 8_1:-68910146 | Msa1210160:CDS |
| ACAGTCACTGACCTGCTAAA+AGG | 0.407516 | 8_1:+68910809 | None:intergenic |
| GTTGTGTTATGAAGTTTGTT+TGG | 0.413139 | 8_1:+68911138 | None:intergenic |
| CGAACCAAGGGCTCTAGAAT+TGG | 0.415707 | 8_1:+68910121 | None:intergenic |
| TGAAGATGAGGCCTCCCTAA+TGG | 0.417771 | 8_1:-68907834 | Msa1210160:CDS |
| GGTTAGAGAGGAAGTTGAAT+TGG | 0.422677 | 8_1:-68909729 | Msa1210160:CDS |
| CTCTTCATCAACCACAATCA+TGG | 0.424245 | 8_1:-68911214 | Msa1210160:five_prime_UTR |
| TATGTAAATCTGCTTCAATA+TGG | 0.426831 | 8_1:+68907462 | None:intergenic |
| CTTAGATACGATCAACATCT+TGG | 0.427325 | 8_1:-68907596 | Msa1210160:CDS |
| ATCTGGTGTCTTGTTATCAT+CGG | 0.436614 | 8_1:+68910853 | None:intergenic |
| GGACAAGGAGTCGTAGGTTC+AGG | 0.437351 | 8_1:-68909139 | Msa1210160:CDS |
| AAAGAGTTGGTGACTTGGAC+TGG | 0.444825 | 8_1:+68907569 | None:intergenic |
| ACAAACAACCTTCCCTGTTA+AGG | 0.445794 | 8_1:+68909373 | None:intergenic |
| ACTAGTAGCTTGGACGACTA+TGG | 0.446998 | 8_1:-68907644 | Msa1210160:CDS |
| CAACGTTCTGAAATGGTTCA+TGG | 0.453414 | 8_1:-68907360 | Msa1210160:CDS |
| AGAGTTGTGGACAACTTTAA+CGG | 0.453745 | 8_1:-68909107 | Msa1210160:CDS |
| AGGTAGTCAACGTTCTGAAA+TGG | 0.456718 | 8_1:-68907367 | Msa1210160:CDS |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | 8_1:-68909434 | Msa1210160:CDS |
| AGACAGTAAGAATAAAAGAT+AGG | 0.465311 | 8_1:+68910967 | None:intergenic |
| AACAACGAAACCAATTATAT+AGG | 0.467623 | 8_1:-68907331 | Msa1210160:CDS |
| GTGGAAATTGTAGTCCTTGA+GGG | 0.468852 | 8_1:-68909326 | Msa1210160:CDS |
| AGGGAAAAGCTCAGAGGAGA+TGG | 0.469260 | 8_1:-68907394 | Msa1210160:CDS |
| TCTAAAAGACGGGCTTTGTA+TGG | 0.472462 | 8_1:-68909195 | Msa1210160:CDS |
| GTTTGGAGACTGGAAAAGAT+AGG | 0.473930 | 8_1:-68908526 | Msa1210160:CDS |
| GACAGTAAGAATGAAGAAAG+AGG | 0.476292 | 8_1:+68910904 | None:intergenic |
| TGATGAAGTTACAATCAGTT+AGG | 0.476619 | 8_1:-68910156 | Msa1210160:CDS |
| CTTGTTGGCGCTCGATCCCT+CGG | 0.478707 | 8_1:+68907760 | None:intergenic |
| ACAGGGAAGGTTGTTTGTAC+AGG | 0.480385 | 8_1:-68909368 | Msa1210160:CDS |
| CTTACAGTTCGCAGCTTCGC+TGG | 0.484817 | 8_1:+68908421 | None:intergenic |
| CGAAACCAATTATATAGGTA+AGG | 0.485755 | 8_1:-68907326 | Msa1210160:exon |
| GTAAATGGATGGCATGATAT+CGG | 0.486133 | 8_1:+68907679 | None:intergenic |
| CCATCCATTTACTCAGTTGG+TGG | 0.487484 | 8_1:-68907668 | Msa1210160:CDS |
| GTGTGAATAACCATCCATTA+GGG | 0.490508 | 8_1:+68907820 | None:intergenic |
| TTGTGTATAATTGAATCCTC+CGG | 0.491833 | 8_1:+68907718 | None:intergenic |
| ATAAAATTACATCTCCTGTA+AGG | 0.493324 | 8_1:+68909219 | None:intergenic |
| CATATACCGATAATTCAAGT+TGG | 0.493774 | 8_1:-68909160 | Msa1210160:CDS |
| TTGTTAGCAGATGCTTAGTA+AGG | 0.494878 | 8_1:-68907084 | Msa1210160:three_prime_UTR |
| AAGAATGAAGAAAGAGGAGA+AGG | 0.500129 | 8_1:+68910910 | None:intergenic |
| TCTGGTGTCTTGTTATCATC+GGG | 0.501066 | 8_1:+68910854 | None:intergenic |
| CTCGGTTCTCGGAGAGCTTG+GGG | 0.503013 | 8_1:+68907778 | None:intergenic |
| GGAGCCAATTCTAGAGCCCT+TGG | 0.505109 | 8_1:-68910125 | Msa1210160:CDS |
| CAAACTTCATCCGACAGACT+TGG | 0.505825 | 8_1:+68908544 | None:intergenic |
| ATTCGAGCTCCTGTAAAGAC+AGG | 0.507114 | 8_1:+68909440 | None:intergenic |
| CTGGAAAAGATAGGCAAAGA+TGG | 0.509701 | 8_1:-68908517 | Msa1210160:CDS |
| ATGCCATCCATTTACTCAGT+TGG | 0.510710 | 8_1:-68907671 | Msa1210160:CDS |
| GTCGGATGAAGTTTGGAGAC+TGG | 0.514983 | 8_1:-68908536 | Msa1210160:CDS |
| TAAATACACCCTCCATGCAT+TGG | 0.516038 | 8_1:-68907216 | Msa1210160:three_prime_UTR |
| AGATTAAAGAGTTGGTGACT+TGG | 0.520779 | 8_1:+68907564 | None:intergenic |
| CATGTCACAGATTAAAGAGT+TGG | 0.522891 | 8_1:+68907556 | None:intergenic |
| AGCTCAGAGGAGATGGAGAA+AGG | 0.523989 | 8_1:-68907387 | Msa1210160:CDS |
| GTCATAGATGTAGAAGGTGC+CGG | 0.524024 | 8_1:+68907419 | None:intergenic |
| AATGCCGTGGGAGAAGTGAC+AGG | 0.524627 | 8_1:-68908060 | Msa1210160:CDS |
| CAAAACAGCTCTTTAACCTC+TGG | 0.534971 | 8_1:+68907180 | None:intergenic |
| CAGGCTTGGGGCAAGAGTTG+TGG | 0.535233 | 8_1:-68909120 | Msa1210160:CDS |
| CTTGGGAATGTGTAGATACT+GGG | 0.536637 | 8_1:-68908201 | Msa1210160:intron |
| TTGCCTAATTTCGAAAGCCT+CGG | 0.538472 | 8_1:-68907620 | Msa1210160:CDS |
| CTTCTTCGAAATCACCCTCA+AGG | 0.540752 | 8_1:+68909312 | None:intergenic |
| AATTACATCTCCTGTAAGGA+GGG | 0.541923 | 8_1:+68909223 | None:intergenic |
| CTTCGACTATGTCGCTCAAG+AGG | 0.542869 | 8_1:-68910880 | Msa1210160:exon |
| GCAAAGATGGAGCTTTCCAC+AGG | 0.543333 | 8_1:-68908504 | Msa1210160:CDS |
| TTATGAAGTTTGTTTGGTGT+AGG | 0.543871 | 8_1:+68911144 | None:intergenic |
| ACCTGAATCTTCAGCTAAGG+TGG | 0.544995 | 8_1:-68909345 | Msa1210160:CDS |
| AATGTGTAGATACTGGGCAC+TGG | 0.545047 | 8_1:-68908195 | Msa1210160:intron |
| ACTTCATCCGACAGACTTGG+AGG | 0.546619 | 8_1:+68908547 | None:intergenic |
| TTCGACTATGTCGCTCAAGA+GGG | 0.547656 | 8_1:-68910879 | Msa1210160:exon |
| ACCTTCTACATCTATGACCA+AGG | 0.551606 | 8_1:-68907414 | Msa1210160:CDS |
| CACGTAGTCTTCAATGCCGT+GGG | 0.551747 | 8_1:-68908072 | Msa1210160:CDS |
| AGGAGTCGTAGGTTCAGGCT+TGG | 0.554806 | 8_1:-68909134 | Msa1210160:CDS |
| GCTCGAATTGAAGGAGAAGA+TGG | 0.556383 | 8_1:-68909425 | Msa1210160:CDS |
| TCAGGCTGATGCTCAAATCT+CGG | 0.557953 | 8_1:-68907894 | Msa1210160:intron |
| AAGTAACCGTAGAGCATGCT+CGG | 0.558792 | 8_1:-68908152 | Msa1210160:CDS |
| AAAGACGGGCTTTGTATGGT+AGG | 0.569603 | 8_1:-68909191 | Msa1210160:CDS |
| ACGCGAAAGAAGAGAGTGAA+AGG | 0.569927 | 8_1:+68911258 | None:intergenic |
| CCAAGCTCTCCGAGAACCGA+GGG | 0.570483 | 8_1:-68907776 | Msa1210160:CDS |
| TGCTGTTGATAGCTTCATGC+CGG | 0.571069 | 8_1:-68907438 | Msa1210160:CDS |
| GATCTTCATCGCCAAAAGCA+TGG | 0.571117 | 8_1:+68907522 | None:intergenic |
| CAAGTTGGACAAGGAGTCGT+AGG | 0.571492 | 8_1:-68909145 | Msa1210160:CDS |
| AGAACAATATTGTGAGAGAG+AGG | 0.572757 | 8_1:-68909259 | Msa1210160:CDS |
| GACTTCTTTGCAGGTTAGAG+AGG | 0.574323 | 8_1:-68909741 | Msa1210160:intron |
| AAAATTGAAACCAAACAACA+TGG | 0.574891 | 8_1:+68910938 | None:intergenic |
| AGTTGGTGGAACTAGTAGCT+TGG | 0.575674 | 8_1:-68907654 | Msa1210160:CDS |
| TTCTGAAATGGTTCATGGTG+AGG | 0.576484 | 8_1:-68907355 | Msa1210160:CDS |
| CAACTCTTTAATCTGTGACA+TGG | 0.583895 | 8_1:-68907555 | Msa1210160:CDS |
| TCACGTAGTCTTCAATGCCG+TGG | 0.588166 | 8_1:-68908073 | Msa1210160:CDS |
| AGTTGACACCTTAACAGGGA+AGG | 0.590193 | 8_1:-68909381 | Msa1210160:CDS |
| ATGTGTAGATACTGGGCACT+GGG | 0.592570 | 8_1:-68908194 | Msa1210160:intron |
| AAATTGAAACCAAACAACAT+GGG | 0.593653 | 8_1:+68910939 | None:intergenic |
| GAGTCGTAGGTTCAGGCTTG+GGG | 0.595624 | 8_1:-68909132 | Msa1210160:CDS |
| CCACCAACTGAGTAAATGGA+TGG | 0.596205 | 8_1:+68907668 | None:intergenic |
| GGTGGAAATTGTAGTCCTTG+AGG | 0.597359 | 8_1:-68909327 | Msa1210160:CDS |
| AGGACCTGAATCTTCAGCTA+AGG | 0.600320 | 8_1:-68909348 | Msa1210160:CDS |
| CAAAAGAGCCAAAATCGCCT+AGG | 0.600379 | 8_1:+68907855 | None:intergenic |
| CCGATAATTCAAGTTGGACA+AGG | 0.600483 | 8_1:-68909154 | Msa1210160:CDS |
| TCATACCACTCGGCGAACCA+AGG | 0.600505 | 8_1:+68910108 | None:intergenic |
| CTGGGATGTCTGCAAAGATG+TGG | 0.602378 | 8_1:-68908176 | Msa1210160:CDS |
| AATTGAAACCAAACAACATG+GGG | 0.603661 | 8_1:+68910940 | None:intergenic |
| ACTGACCTGCTAAAAGGAGG+AGG | 0.606678 | 8_1:+68910815 | None:intergenic |
| AAATTACATCTCCTGTAAGG+AGG | 0.606850 | 8_1:+68909222 | None:intergenic |
| CATACCACTCGGCGAACCAA+GGG | 0.606970 | 8_1:+68910109 | None:intergenic |
| AGAGCCCTTGGTTCGCCGAG+TGG | 0.610358 | 8_1:-68910113 | Msa1210160:intron |
| CCCAAGCTCTCCGAGAACCG+AGG | 0.613214 | 8_1:-68907777 | Msa1210160:CDS |
| ATTACATCTCCTGTAAGGAG+GGG | 0.613504 | 8_1:+68909224 | None:intergenic |
| GTCATTTCTGCACTCAACCT+AGG | 0.615671 | 8_1:-68907872 | Msa1210160:CDS |
| GATGAGGCCTCCCTAATGGA+TGG | 0.619733 | 8_1:-68907830 | Msa1210160:CDS |
| TTTCACGACTCAAACGCCTG+TGG | 0.621723 | 8_1:+68908488 | None:intergenic |
| AATATTGTGAGAGAGAGGGA+TGG | 0.622113 | 8_1:-68909254 | Msa1210160:CDS |
| GAACAATATTGTGAGAGAGA+GGG | 0.623743 | 8_1:-68909258 | Msa1210160:CDS |
| GAAAAGAATCACCATGATTG+TGG | 0.624396 | 8_1:+68911203 | None:intergenic |
| ACAAGTCCGAGCATGCTCTA+CGG | 0.625641 | 8_1:+68908146 | None:intergenic |
| TTGTCTCTTCAAAAGACCGG+AGG | 0.633128 | 8_1:-68907734 | Msa1210160:CDS |
| CAGTCCTGTCACTTCTCCCA+CGG | 0.639148 | 8_1:+68908056 | None:intergenic |
| ACACCACCCTCCAAGTCTGT+CGG | 0.639438 | 8_1:-68908554 | Msa1210160:CDS |
| CTTCATCCGACAGACTTGGA+GGG | 0.640576 | 8_1:+68908548 | None:intergenic |
| AATATTGTAGAGGACTAACA+TGG | 0.650405 | 8_1:+68906973 | None:intergenic |
| TGGGATGTCTGCAAAGATGT+GGG | 0.655279 | 8_1:-68908175 | Msa1210160:CDS |
| TTCGAGCTCCTGTAAAGACA+GGG | 0.660821 | 8_1:+68909441 | None:intergenic |
| GTCACTGACCTGCTAAAAGG+AGG | 0.661563 | 8_1:+68910812 | None:intergenic |
| CCTTCTACATCTATGACCAA+GGG | 0.672898 | 8_1:-68907413 | Msa1210160:CDS |
| TGAATAACCATCCATTAGGG+AGG | 0.673368 | 8_1:+68907823 | None:intergenic |
| GTTGATCGTATCTAAGTCCG+AGG | 0.677735 | 8_1:+68907603 | None:intergenic |
| CATCCGACAGACTTGGAGGG+TGG | 0.690633 | 8_1:+68908551 | None:intergenic |
| GTTTAGTTGACACCTTAACA+GGG | 0.693123 | 8_1:-68909385 | Msa1210160:CDS |
| TGACCAAGGGAAAAGCTCAG+AGG | 0.704879 | 8_1:-68907400 | Msa1210160:CDS |
| ACGGCATTGAAGACTACGTG+AGG | 0.714532 | 8_1:+68908075 | None:intergenic |
| TTTATTGTTAGGGATCACAG+AGG | 0.753319 | 8_1:-68909053 | Msa1210160:CDS |
| ATTGAAACCAAACAACATGG+GGG | 0.764016 | 8_1:+68910941 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCATTTTTATTTAATT+GGG | - | chr8_1:68907598-68907617 | Msa1210160:CDS | 10.0% |
| !! | TATTATTTAATTATCTGTTT+AGG | - | chr8_1:68909854-68909873 | Msa1210160:intron | 10.0% |
| !!! | TTATTTTTTAAATACTTTCA+TGG | - | chr8_1:68909957-68909976 | Msa1210160:intron | 10.0% |
| !!! | TATTTTTTAAATACTTTCAT+GGG | - | chr8_1:68909958-68909977 | Msa1210160:intron | 10.0% |
| !!! | GAATTGCATTTTTATTTAAT+TGG | - | chr8_1:68907597-68907616 | Msa1210160:CDS | 15.0% |
| !!! | ATTGCATTTTTATTTAATTG+GGG | - | chr8_1:68907599-68907618 | Msa1210160:CDS | 15.0% |
| !! | ACAGTTTATTTGATTATTAA+CGG | - | chr8_1:68908013-68908032 | Msa1210160:intron | 15.0% |
| !!! | ATGTAATATTATATGCTTTT+AGG | - | chr8_1:68908241-68908260 | Msa1210160:intron | 15.0% |
| !!! | GTAATTTTATATCTAAAAGA+CGG | - | chr8_1:68909035-68909054 | Msa1210160:intron | 15.0% |
| !!! | TAATTTTATATCTAAAAGAC+GGG | - | chr8_1:68909036-68909055 | Msa1210160:intron | 15.0% |
| !!! | AATTTTGATCTGAAATCAAA+TGG | - | chr8_1:68907543-68907562 | Msa1210160:CDS | 20.0% |
| !!! | ATTTTGATCTGAAATCAAAT+GGG | - | chr8_1:68907544-68907563 | Msa1210160:CDS | 20.0% |
| !! | CAGTTTATTTGATTATTAAC+GGG | - | chr8_1:68908014-68908033 | Msa1210160:intron | 20.0% |
| !! | GTATGAACTCTATTATATTA+CGG | - | chr8_1:68908150-68908169 | Msa1210160:CDS | 20.0% |
| !!! | TGCTTTTAGGATTTTTATAA+TGG | - | chr8_1:68908254-68908273 | Msa1210160:intron | 20.0% |
| !! | CCAAAAACATAATCAATATA+TGG | + | chr8_1:68908425-68908444 | None:intergenic | 20.0% |
| !!! | CCATATATTGATTATGTTTT+TGG | - | chr8_1:68908422-68908441 | Msa1210160:intron | 20.0% |
| !!! | TATATTGATTATGTTTTTGG+AGG | - | chr8_1:68908425-68908444 | Msa1210160:intron | 20.0% |
| !! | GAAGAAAATCAATATGATAA+AGG | + | chr8_1:68909497-68909516 | None:intergenic | 20.0% |
| !!! | TATCATATTGATTTTCTTCT+TGG | - | chr8_1:68909498-68909517 | Msa1210160:CDS | 20.0% |
| !!! | TAAGATATTTGTTGTAACTA+AGG | + | chr8_1:68909600-68909619 | None:intergenic | 20.0% |
| !!! | ATATTTGAGCTTTTAAAACT+TGG | - | chr8_1:68909629-68909648 | Msa1210160:intron | 20.0% |
| !! | TTTGAGAGAAGAAAAATTAT+GGG | - | chr8_1:68910987-68911006 | Msa1210160:five_prime_UTR | 20.0% |
| !!! | GTAGTTTCGTTTTTATTTGA+TGG | - | chr8_1:68907165-68907184 | Msa1210160:three_prime_UTR | 25.0% |
| ! | AGACAGTAAGAATAAAAGAT+AGG | + | chr8_1:68907277-68907296 | None:intergenic | 25.0% |
| ! | AAATTGAAACCAAACAACAT+GGG | + | chr8_1:68907305-68907324 | None:intergenic | 25.0% |
| ! | AAAATTGAAACCAAACAACA+TGG | + | chr8_1:68907306-68907325 | None:intergenic | 25.0% |
| !!! | TTTTGATCTGAAATCAAATG+GGG | - | chr8_1:68907545-68907564 | Msa1210160:CDS | 25.0% |
| ! | ACCTACTTAAATTCGAAAAA+GGG | + | chr8_1:68907756-68907775 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTCTAAGGAAAA+AGG | - | chr8_1:68907779-68907798 | Msa1210160:CDS | 25.0% |
| !!! | TTTCATGTTCTAAGGAAAAA+GGG | - | chr8_1:68907780-68907799 | Msa1210160:CDS | 25.0% |
| ! | CAAGAATAATACACAAACAA+TGG | + | chr8_1:68907811-68907830 | None:intergenic | 25.0% |
| ! | CATTGTTTGTGTATTATTCT+TGG | - | chr8_1:68907809-68907828 | Msa1210160:CDS | 25.0% |
| !!! | ACTGTTATAGTTCTAAATTG+TGG | - | chr8_1:68907841-68907860 | Msa1210160:CDS | 25.0% |
| ! | AATAAACTGTGCATACAAAA+TGG | + | chr8_1:68908003-68908022 | None:intergenic | 25.0% |
| !!! | TTTGACATTTTGTTTTAGTG+TGG | - | chr8_1:68908053-68908072 | Msa1210160:CDS | 25.0% |
| ! | CATAATCAATATATGGTATC+AGG | + | chr8_1:68908418-68908437 | None:intergenic | 25.0% |
| ! | CAATTATATACCAGTAAAAG+TGG | + | chr8_1:68908471-68908490 | None:intergenic | 25.0% |
| !! | AAGAAAAAGCTTTTGCTTAA+TGG | - | chr8_1:68908651-68908670 | Msa1210160:intron | 25.0% |
| !!! | ATCTTTTTTGCTTTGTTTTC+AGG | - | chr8_1:68908706-68908725 | Msa1210160:intron | 25.0% |
| ! | ATATTGTTCTTGAAATCTTC+AGG | + | chr8_1:68908972-68908991 | None:intergenic | 25.0% |
| ! | ATAAAATTACATCTCCTGTA+AGG | + | chr8_1:68909025-68909044 | None:intergenic | 25.0% |
| ! | AGACAGATTCATTTATTGTT+AGG | - | chr8_1:68909177-68909196 | Msa1210160:CDS | 25.0% |
| ! | GACAGATTCATTTATTGTTA+GGG | - | chr8_1:68909178-68909197 | Msa1210160:CDS | 25.0% |
| !!! | ATTTCACTTTTAAGAGAGTA+AGG | - | chr8_1:68909340-68909359 | Msa1210160:CDS | 25.0% |
| !!! | TGTATTTTCGTTCTTGTTAT+TGG | - | chr8_1:68909546-68909565 | Msa1210160:intron | 25.0% |
| ! | AAAGTAGAAAGCTAAAAATC+TGG | - | chr8_1:68909571-68909590 | Msa1210160:intron | 25.0% |
| ! | TTTAGATAAGTACTACTAGT+TGG | - | chr8_1:68909985-68910004 | Msa1210160:intron | 25.0% |
| ! | GAATGAAAATGTGAAAAGTA+AGG | + | chr8_1:68910290-68910309 | None:intergenic | 25.0% |
| !!! | AAATTTAATTTTCCACGATC+AGG | - | chr8_1:68910329-68910348 | Msa1210160:intron | 25.0% |
| ! | TATGTAAATCTGCTTCAATA+TGG | + | chr8_1:68910782-68910801 | None:intergenic | 25.0% |
| ! | AACAACGAAACCAATTATAT+AGG | - | chr8_1:68910910-68910929 | Msa1210160:five_prime_UTR | 25.0% |
| ! | CAAAACCTTACCTATATAAT+TGG | + | chr8_1:68910923-68910942 | None:intergenic | 25.0% |
| !!! | ACAGCACAATATTATTTTGT+CGG | + | chr8_1:68910968-68910987 | None:intergenic | 25.0% |
| ! | GTTTGAGAGAAGAAAAATTA+TGG | - | chr8_1:68910986-68911005 | Msa1210160:five_prime_UTR | 25.0% |
| !!! | ACTTTATCTTTTTTTCAGTC+AGG | - | chr8_1:68911121-68911140 | Msa1210160:five_prime_UTR | 25.0% |
| !! | TTCAAGATAGACTTTTATTC+TGG | - | chr8_1:68911202-68911221 | Msa1210160:five_prime_UTR | 25.0% |
| !! | TTATGAAGTTTGTTTGGTGT+AGG | + | chr8_1:68907100-68907119 | None:intergenic | 30.0% |
| ! | GTTGTGTTATGAAGTTTGTT+TGG | + | chr8_1:68907106-68907125 | None:intergenic | 30.0% |
| ! | TATCAGTTACTTCCTCTTTT+TGG | - | chr8_1:68907198-68907217 | Msa1210160:three_prime_UTR | 30.0% |
| AATTGAAACCAAACAACATG+GGG | + | chr8_1:68907304-68907323 | None:intergenic | 30.0% | |
| !!! | TTGATTGTGTTTTGAGGAAA+TGG | - | chr8_1:68907503-68907522 | Msa1210160:CDS | 30.0% |
| ATTGTGAAGCGAATTAATGT+TGG | - | chr8_1:68907648-68907667 | Msa1210160:CDS | 30.0% | |
| TTGTGAAGCGAATTAATGTT+GGG | - | chr8_1:68907649-68907668 | Msa1210160:CDS | 30.0% | |
| !!! | TCCCTTTTTCGAATTTAAGT+AGG | - | chr8_1:68907752-68907771 | Msa1210160:CDS | 30.0% |
| CACCTACTTAAATTCGAAAA+AGG | + | chr8_1:68907757-68907776 | None:intergenic | 30.0% | |
| !! | AAAATGGTTCTAAATTGCAG+TGG | + | chr8_1:68907987-68908006 | None:intergenic | 30.0% |
| TGATGAAGTTACAATCAGTT+AGG | - | chr8_1:68908085-68908104 | Msa1210160:CDS | 30.0% | |
| ACAATCAGTTAGGAATTTGA+TGG | - | chr8_1:68908095-68908114 | Msa1210160:CDS | 30.0% | |
| ATAATAGAGTTCATACCACT+CGG | + | chr8_1:68908146-68908165 | None:intergenic | 30.0% | |
| GTTGTATTGTATCCACTTTA+TGG | - | chr8_1:68908377-68908396 | Msa1210160:intron | 30.0% | |
| CAAAAAAGATGCATGAGAAA+CGG | + | chr8_1:68908696-68908715 | None:intergenic | 30.0% | |
| CATATACCGATAATTCAAGT+TGG | - | chr8_1:68909081-68909100 | Msa1210160:CDS | 30.0% | |
| ! | TTCGTTTATTATGGTTTGTG+TGG | + | chr8_1:68909386-68909405 | None:intergenic | 30.0% |
| CTACTGTTCTTCGTTTATTA+TGG | + | chr8_1:68909395-68909414 | None:intergenic | 30.0% | |
| TGATTCACATGAAAACAGTT+GGG | - | chr8_1:68909425-68909444 | Msa1210160:CDS | 30.0% | |
| ! | ATATATTTGTTGCCACAAGT+TGG | - | chr8_1:68909878-68909897 | Msa1210160:intron | 30.0% |
| AAATGACAAAGTTCTTTGCT+TGG | - | chr8_1:68910022-68910041 | Msa1210160:intron | 30.0% | |
| AATGACAAAGTTCTTTGCTT+GGG | - | chr8_1:68910023-68910042 | Msa1210160:intron | 30.0% | |
| ! | ATCAGAGATAAATGCCTTTT+CGG | + | chr8_1:68910254-68910273 | None:intergenic | 30.0% |
| TGAAAAGTAAGGAAATTAGC+GGG | + | chr8_1:68910279-68910298 | None:intergenic | 30.0% | |
| GTGAAAAGTAAGGAAATTAG+CGG | + | chr8_1:68910280-68910299 | None:intergenic | 30.0% | |
| TTGTGTATAATTGAATCCTC+CGG | + | chr8_1:68910526-68910545 | None:intergenic | 30.0% | |
| CGAAACCAATTATATAGGTA+AGG | - | chr8_1:68910915-68910934 | Msa1210160:five_prime_UTR | 30.0% | |
| GAAAAGAATCACCATGATTG+TGG | + | chr8_1:68907041-68907060 | None:intergenic | 35.0% | |
| TATATTGTGACGCCAAAAAG+AGG | + | chr8_1:68907213-68907232 | None:intergenic | 35.0% | |
| ATTGAAACCAAACAACATGG+GGG | + | chr8_1:68907303-68907322 | None:intergenic | 35.0% | |
| AAGAATGAAGAAAGAGGAGA+AGG | + | chr8_1:68907334-68907353 | None:intergenic | 35.0% | |
| GACAGTAAGAATGAAGAAAG+AGG | + | chr8_1:68907340-68907359 | None:intergenic | 35.0% | |
| ! | ATCTGGTGTCTTGTTATCAT+CGG | + | chr8_1:68907391-68907410 | None:intergenic | 35.0% |
| !! | TGCTGTTTGATTGTGTTTTG+AGG | - | chr8_1:68907497-68907516 | Msa1210160:CDS | 35.0% |
| !!! | GTGTTTTGAGGAAATGGTAA+TGG | - | chr8_1:68907509-68907528 | Msa1210160:CDS | 35.0% |
| !! | GAAATCAAATGGGGTGTTTT+TGG | - | chr8_1:68907554-68907573 | Msa1210160:CDS | 35.0% |
| ATGTACTTATACTGTCGTTG+TGG | - | chr8_1:68907681-68907700 | Msa1210160:CDS | 35.0% | |
| AGGTGCAATTTCATGTTCTA+AGG | - | chr8_1:68907772-68907791 | Msa1210160:CDS | 35.0% | |
| GTATTGTATCCACTTTATGG+CGG | - | chr8_1:68908380-68908399 | Msa1210160:intron | 35.0% | |
| GTTTAGTTGACACCTTAACA+GGG | - | chr8_1:68908856-68908875 | Msa1210160:intron | 35.0% | |
| TCGAAGAAGAAAGTGACATT+TGG | - | chr8_1:68908943-68908962 | Msa1210160:intron | 35.0% | |
| AGAACAATATTGTGAGAGAG+AGG | - | chr8_1:68908982-68909001 | Msa1210160:intron | 35.0% | |
| GAACAATATTGTGAGAGAGA+GGG | - | chr8_1:68908983-68909002 | Msa1210160:intron | 35.0% | |
| AATTACATCTCCTGTAAGGA+GGG | + | chr8_1:68909021-68909040 | None:intergenic | 35.0% | |
| AAATTACATCTCCTGTAAGG+AGG | + | chr8_1:68909022-68909041 | None:intergenic | 35.0% | |
| CCTTGTCCAACTTGAATTAT+CGG | + | chr8_1:68909090-68909109 | None:intergenic | 35.0% | |
| AGAGTTGTGGACAACTTTAA+CGG | - | chr8_1:68909134-68909153 | Msa1210160:CDS | 35.0% | |
| TTTATTGTTAGGGATCACAG+AGG | - | chr8_1:68909188-68909207 | Msa1210160:CDS | 35.0% | |
| GAGTAAGGTTCTGTTAGAAT+AGG | - | chr8_1:68909355-68909374 | Msa1210160:CDS | 35.0% | |
| GTGATTCACATGAAAACAGT+TGG | - | chr8_1:68909424-68909443 | Msa1210160:CDS | 35.0% | |
| ! | TACTAGTTGGTTTCTCTCTT+TGG | - | chr8_1:68909998-68910017 | Msa1210160:intron | 35.0% |
| !!! | TTTTGGCTCTTTTGAAGATG+AGG | - | chr8_1:68910395-68910414 | Msa1210160:intron | 35.0% |
| GTGTGAATAACCATCCATTA+GGG | + | chr8_1:68910424-68910443 | None:intergenic | 35.0% | |
| AGTGTGAATAACCATCCATT+AGG | + | chr8_1:68910425-68910444 | None:intergenic | 35.0% | |
| TTGAAGAGACAAAAGCTTGT+TGG | + | chr8_1:68910499-68910518 | None:intergenic | 35.0% | |
| ! | CTTTTGTCTCTTCAAAAGAC+CGG | - | chr8_1:68910504-68910523 | Msa1210160:intron | 35.0% |
| GTAAATGGATGGCATGATAT+CGG | + | chr8_1:68910565-68910584 | None:intergenic | 35.0% | |
| CTTAGATACGATCAACATCT+TGG | - | chr8_1:68910645-68910664 | Msa1210160:intron | 35.0% | |
| !! | AGATTAAAGAGTTGGTGACT+TGG | + | chr8_1:68910680-68910699 | None:intergenic | 35.0% |
| CATGTCACAGATTAAAGAGT+TGG | + | chr8_1:68910688-68910707 | None:intergenic | 35.0% | |
| CAACTCTTTAATCTGTGACA+TGG | - | chr8_1:68910686-68910705 | Msa1210160:intron | 35.0% | |
| ! | GATTCAATAGTCCATGCTTT+TGG | - | chr8_1:68910708-68910727 | Msa1210160:intron | 35.0% |
| !! | TCATCTGCAATTTTTCGATG+CGG | - | chr8_1:68910740-68910759 | Msa1210160:intron | 35.0% |
| TACAAAAACCAATGCATGGA+GGG | + | chr8_1:68911036-68911055 | None:intergenic | 35.0% | |
| AAGCTACAAAAACCAATGCA+TGG | + | chr8_1:68911040-68911059 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTCAGTCAGGAG+AGG | - | chr8_1:68911126-68911145 | Msa1210160:five_prime_UTR | 35.0% |
| TTGTTAGCAGATGCTTAGTA+AGG | - | chr8_1:68911157-68911176 | Msa1210160:five_prime_UTR | 35.0% | |
| CTCTTCATCAACCACAATCA+TGG | - | chr8_1:68907027-68907046 | Msa1210160:three_prime_UTR | 40.0% | |
| !! | GTTTGGTGTAGGATGTTTCT+GGG | + | chr8_1:68907089-68907108 | None:intergenic | 40.0% |
| !! | TGTTTGGTGTAGGATGTTTC+TGG | + | chr8_1:68907090-68907109 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTTGTTATCATC+GGG | + | chr8_1:68907390-68907409 | None:intergenic | 40.0% |
| GGCTTTCTACGTTTATCATC+TGG | + | chr8_1:68907408-68907427 | None:intergenic | 40.0% | |
| TGCCAGGGATGAAATGAAAT+GGG | - | chr8_1:68907710-68907729 | Msa1210160:CDS | 40.0% | |
| TTCCCATTTCATTTCATCCC+TGG | + | chr8_1:68907715-68907734 | None:intergenic | 40.0% | |
| GTGGTTGCAACTGAAATTGT+TGG | - | chr8_1:68907860-68907879 | Msa1210160:CDS | 40.0% | |
| GACAAATGCATGCACAATTG+TGG | + | chr8_1:68907926-68907945 | None:intergenic | 40.0% | |
| TATTTACAGCCCACAAAGCA+TGG | + | chr8_1:68908348-68908367 | None:intergenic | 40.0% | |
| AAAGAATAGCCGCCATAAAG+TGG | + | chr8_1:68908392-68908411 | None:intergenic | 40.0% | |
| ! | CTTTATGGCGGCTATTCTTT+TGG | - | chr8_1:68908392-68908411 | Msa1210160:intron | 40.0% |
| !!! | GATTATGTTTTTGGAGGAGC+TGG | - | chr8_1:68908431-68908450 | Msa1210160:CDS | 40.0% |
| !!! | GGTTTTGGTTCCACTTTTAC+TGG | - | chr8_1:68908458-68908477 | Msa1210160:CDS | 40.0% |
| ATGCTATGTGACTTCTTTGC+AGG | - | chr8_1:68908491-68908510 | Msa1210160:CDS | 40.0% | |
| GGTTAGAGAGGAAGTTGAAT+TGG | - | chr8_1:68908512-68908531 | Msa1210160:CDS | 40.0% | |
| CATACGCAACTCGATAAATG+AGG | + | chr8_1:68908608-68908627 | None:intergenic | 40.0% | |
| !! | GAAGCAAAGGGAATGGATTA+TGG | - | chr8_1:68908627-68908646 | Msa1210160:intron | 40.0% |
| !!! | TGCTTTGTTTTCAGGACTTG+TGG | - | chr8_1:68908714-68908733 | Msa1210160:intron | 40.0% |
| !! | TGTTTTCAGGACTTGTGGAA+AGG | - | chr8_1:68908719-68908738 | Msa1210160:intron | 40.0% |
| ATATCTCTCCCTGTCTTTAC+AGG | - | chr8_1:68908792-68908811 | Msa1210160:intron | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | - | chr8_1:68908807-68908826 | Msa1210160:intron | 40.0% | |
| CGTTTAGTTGACACCTTAAC+AGG | - | chr8_1:68908855-68908874 | Msa1210160:intron | 40.0% | |
| ACAAACAACCTTCCCTGTTA+AGG | + | chr8_1:68908871-68908890 | None:intergenic | 40.0% | |
| GTGGAAATTGTAGTCCTTGA+GGG | - | chr8_1:68908915-68908934 | Msa1210160:intron | 40.0% | |
| AATATTGTGAGAGAGAGGGA+TGG | - | chr8_1:68908987-68909006 | Msa1210160:intron | 40.0% | |
| ATTACATCTCCTGTAAGGAG+GGG | + | chr8_1:68909020-68909039 | None:intergenic | 40.0% | |
| ! | TCTAAAAGACGGGCTTTGTA+TGG | - | chr8_1:68909046-68909065 | Msa1210160:intron | 40.0% |
| !! | CCGATAATTCAAGTTGGACA+AGG | - | chr8_1:68909087-68909106 | Msa1210160:CDS | 40.0% |
| GTTTGGAGACTGGAAAAGAT+AGG | - | chr8_1:68909715-68909734 | Msa1210160:CDS | 40.0% | |
| CTGGAAAAGATAGGCAAAGA+TGG | - | chr8_1:68909724-68909743 | Msa1210160:CDS | 40.0% | |
| TTGACATGCTTACCAACTTG+TGG | + | chr8_1:68909893-68909912 | None:intergenic | 40.0% | |
| CTTGGGAATGTGTAGATACT+GGG | - | chr8_1:68910040-68910059 | Msa1210160:intron | 40.0% | |
| ! | TAAGCTGTCTGAAACCGAAA+AGG | - | chr8_1:68910237-68910256 | Msa1210160:intron | 40.0% |
| TGAATAACCATCCATTAGGG+AGG | + | chr8_1:68910421-68910440 | None:intergenic | 40.0% | |
| ATGCCATCCATTTACTCAGT+TGG | - | chr8_1:68910570-68910589 | Msa1210160:intron | 40.0% | |
| AGTTCCACCAACTGAGTAAA+TGG | + | chr8_1:68910580-68910599 | None:intergenic | 40.0% | |
| TTGCCTAATTTCGAAAGCCT+CGG | - | chr8_1:68910621-68910640 | Msa1210160:intron | 40.0% | |
| ACCTTCTACATCTATGACCA+AGG | - | chr8_1:68910827-68910846 | Msa1210160:CDS | 40.0% | |
| CCTTCTACATCTATGACCAA+GGG | - | chr8_1:68910828-68910847 | Msa1210160:CDS | 40.0% | |
| !! | AGGTAGTCAACGTTCTGAAA+TGG | - | chr8_1:68910874-68910893 | Msa1210160:CDS | 40.0% |
| !! | CAACGTTCTGAAATGGTTCA+TGG | - | chr8_1:68910881-68910900 | Msa1210160:exon | 40.0% |
| !! | TTCTGAAATGGTTCATGGTG+AGG | - | chr8_1:68910886-68910905 | Msa1210160:exon | 40.0% |
| TAAATACACCCTCCATGCAT+TGG | - | chr8_1:68911025-68911044 | Msa1210160:five_prime_UTR | 40.0% | |
| CTACAAAAACCAATGCATGG+AGG | + | chr8_1:68911037-68911056 | None:intergenic | 40.0% | |
| CAAAACAGCTCTTTAACCTC+TGG | + | chr8_1:68911064-68911083 | None:intergenic | 40.0% | |
| ACGCGAAAGAAGAGAGTGAA+AGG | + | chr8_1:68906986-68907005 | None:intergenic | 45.0% | |
| TTCGACTATGTCGCTCAAGA+GGG | - | chr8_1:68907362-68907381 | Msa1210160:CDS | 45.0% | |
| ACAGTCACTGACCTGCTAAA+AGG | + | chr8_1:68907435-68907454 | None:intergenic | 45.0% | |
| CTGCCAGGGATGAAATGAAA+TGG | - | chr8_1:68907709-68907728 | Msa1210160:CDS | 45.0% | |
| TGAGTTACCACCATGCTTTG+TGG | - | chr8_1:68908335-68908354 | Msa1210160:intron | 45.0% | |
| GAGTTACCACCATGCTTTGT+GGG | - | chr8_1:68908336-68908355 | Msa1210160:intron | 45.0% | |
| !!! | TGTTTTTGGAGGAGCTGGTT+TGG | - | chr8_1:68908436-68908455 | Msa1210160:CDS | 45.0% |
| !! | GTTTTTGGAGGAGCTGGTTT+GGG | - | chr8_1:68908437-68908456 | Msa1210160:CDS | 45.0% |
| GACTTCTTTGCAGGTTAGAG+AGG | - | chr8_1:68908500-68908519 | Msa1210160:CDS | 45.0% | |
| ! | TCGAGTTGCGTATGAAGCAA+AGG | - | chr8_1:68908614-68908633 | Msa1210160:intron | 45.0% |
| CGAGTTGCGTATGAAGCAAA+GGG | - | chr8_1:68908615-68908634 | Msa1210160:intron | 45.0% | |
| TGCGTATGAAGCAAAGGGAA+TGG | - | chr8_1:68908620-68908639 | Msa1210160:intron | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | + | chr8_1:68908803-68908822 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | + | chr8_1:68908804-68908823 | None:intergenic | 45.0% | |
| GCTCGAATTGAAGGAGAAGA+TGG | - | chr8_1:68908816-68908835 | Msa1210160:intron | 45.0% | |
| AGTTGACACCTTAACAGGGA+AGG | - | chr8_1:68908860-68908879 | Msa1210160:intron | 45.0% | |
| ACAGGGAAGGTTGTTTGTAC+AGG | - | chr8_1:68908873-68908892 | Msa1210160:intron | 45.0% | |
| AGGACCTGAATCTTCAGCTA+AGG | - | chr8_1:68908893-68908912 | Msa1210160:intron | 45.0% | |
| ACCTGAATCTTCAGCTAAGG+TGG | - | chr8_1:68908896-68908915 | Msa1210160:intron | 45.0% | |
| TCCACCTTAGCTGAAGATTC+AGG | + | chr8_1:68908900-68908919 | None:intergenic | 45.0% | |
| GGTGGAAATTGTAGTCCTTG+AGG | - | chr8_1:68908914-68908933 | Msa1210160:intron | 45.0% | |
| CTTCTTCGAAATCACCCTCA+AGG | + | chr8_1:68908932-68908951 | None:intergenic | 45.0% | |
| ! | AAAGACGGGCTTTGTATGGT+AGG | - | chr8_1:68909050-68909069 | Msa1210160:CDS | 45.0% |
| CAAACTTCATCCGACAGACT+TGG | + | chr8_1:68909700-68909719 | None:intergenic | 45.0% | |
| CAAGTCTGTCGGATGAAGTT+TGG | - | chr8_1:68909698-68909717 | Msa1210160:CDS | 45.0% | |
| GCTTGGGAATGTGTAGATAC+TGG | - | chr8_1:68910039-68910058 | Msa1210160:intron | 45.0% | |
| AATGTGTAGATACTGGGCAC+TGG | - | chr8_1:68910046-68910065 | Msa1210160:intron | 45.0% | |
| ATGTGTAGATACTGGGCACT+GGG | - | chr8_1:68910047-68910066 | Msa1210160:intron | 45.0% | |
| TGGGATGTCTGCAAAGATGT+GGG | - | chr8_1:68910066-68910085 | Msa1210160:intron | 45.0% | |
| AAGTAACCGTAGAGCATGCT+CGG | - | chr8_1:68910089-68910108 | Msa1210160:intron | 45.0% | |
| TCAGGCTGATGCTCAAATCT+CGG | - | chr8_1:68910347-68910366 | Msa1210160:intron | 45.0% | |
| GTCATTTCTGCACTCAACCT+AGG | - | chr8_1:68910369-68910388 | Msa1210160:intron | 45.0% | |
| CAAAAGAGCCAAAATCGCCT+AGG | + | chr8_1:68910389-68910408 | None:intergenic | 45.0% | |
| TTGTCTCTTCAAAAGACCGG+AGG | - | chr8_1:68910507-68910526 | Msa1210160:intron | 45.0% | |
| CCACCAACTGAGTAAATGGA+TGG | + | chr8_1:68910576-68910595 | None:intergenic | 45.0% | |
| CCATCCATTTACTCAGTTGG+TGG | - | chr8_1:68910573-68910592 | Msa1210160:intron | 45.0% | |
| !! | AGTTGGTGGAACTAGTAGCT+TGG | - | chr8_1:68910587-68910606 | Msa1210160:intron | 45.0% |
| ACTAGTAGCTTGGACGACTA+TGG | - | chr8_1:68910597-68910616 | Msa1210160:intron | 45.0% | |
| AGTCCGAGGCTTTCGAAATT+AGG | + | chr8_1:68910627-68910646 | None:intergenic | 45.0% | |
| GTTGATCGTATCTAAGTCCG+AGG | + | chr8_1:68910641-68910660 | None:intergenic | 45.0% | |
| !! | AAAGAGTTGGTGACTTGGAC+TGG | + | chr8_1:68910675-68910694 | None:intergenic | 45.0% |
| GATCTTCATCGCCAAAAGCA+TGG | + | chr8_1:68910722-68910741 | None:intergenic | 45.0% | |
| !! | TGCTGTTGATAGCTTCATGC+CGG | - | chr8_1:68910803-68910822 | Msa1210160:intron | 45.0% |
| ! | GTCATAGATGTAGAAGGTGC+CGG | + | chr8_1:68910825-68910844 | None:intergenic | 45.0% |
| CCCTTGGTCATAGATGTAGA+AGG | + | chr8_1:68910831-68910850 | None:intergenic | 45.0% | |
| !! | TGGTTTTTGTAGCTTGCCAG+AGG | - | chr8_1:68911045-68911064 | Msa1210160:five_prime_UTR | 45.0% |
| !!! | ATAGTTTTATTATTATATAT+TGG | - | chr8_1:68907230-68907249 | Msa1210160:three_prime_UTR | 5.0% |
| GTCTACACCCCCATGTTGTT+TGG | - | chr8_1:68907293-68907312 | Msa1210160:three_prime_UTR | 50.0% | |
| CTTCGACTATGTCGCTCAAG+AGG | - | chr8_1:68907361-68907380 | Msa1210160:CDS | 50.0% | |
| TCGACTATGTCGCTCAAGAG+GGG | - | chr8_1:68907363-68907382 | Msa1210160:CDS | 50.0% | |
| ! | GAAAGCCTCCTCCTTTTAGC+AGG | - | chr8_1:68907421-68907440 | Msa1210160:CDS | 50.0% |
| ACTGACCTGCTAAAAGGAGG+AGG | + | chr8_1:68907429-68907448 | None:intergenic | 50.0% | |
| GTCACTGACCTGCTAAAAGG+AGG | + | chr8_1:68907432-68907451 | None:intergenic | 50.0% | |
| TCGTTGTGGAATGTCTGCCA+GGG | - | chr8_1:68907695-68907714 | Msa1210160:CDS | 50.0% | |
| !! | CGAACCAAGGGCTCTAGAAT+TGG | + | chr8_1:68908123-68908142 | None:intergenic | 50.0% |
| TTACAGCCCACAAAGCATGG+TGG | + | chr8_1:68908345-68908364 | None:intergenic | 50.0% | |
| GGAAAAAAGCCCCTCCTTAC+AGG | - | chr8_1:68909008-68909027 | Msa1210160:intron | 50.0% | |
| ! | CAAGTTGGACAAGGAGTCGT+AGG | - | chr8_1:68909096-68909115 | Msa1210160:CDS | 50.0% |
| CTTCATCCGACAGACTTGGA+GGG | + | chr8_1:68909696-68909715 | None:intergenic | 50.0% | |
| ACTTCATCCGACAGACTTGG+AGG | + | chr8_1:68909697-68909716 | None:intergenic | 50.0% | |
| GTCGGATGAAGTTTGGAGAC+TGG | - | chr8_1:68909705-68909724 | Msa1210160:CDS | 50.0% | |
| GCAAAGATGGAGCTTTCCAC+AGG | - | chr8_1:68909737-68909756 | Msa1210160:intron | 50.0% | |
| TTTCACGACTCAAACGCCTG+TGG | + | chr8_1:68909756-68909775 | None:intergenic | 50.0% | |
| CTGGGATGTCTGCAAAGATG+TGG | - | chr8_1:68910065-68910084 | Msa1210160:intron | 50.0% | |
| ACAAGTCCGAGCATGCTCTA+CGG | + | chr8_1:68910098-68910117 | None:intergenic | 50.0% | |
| ! | ACGGCATTGAAGACTACGTG+AGG | + | chr8_1:68910169-68910188 | None:intergenic | 50.0% |
| TCACGTAGTCTTCAATGCCG+TGG | - | chr8_1:68910168-68910187 | Msa1210160:CDS | 50.0% | |
| CACGTAGTCTTCAATGCCGT+GGG | - | chr8_1:68910169-68910188 | Msa1210160:CDS | 50.0% | |
| TTTGAGCATCAGCCTGATCG+TGG | + | chr8_1:68910344-68910363 | None:intergenic | 50.0% | |
| ! | GCACTCAACCTAGGCGATTT+TGG | - | chr8_1:68910378-68910397 | Msa1210160:intron | 50.0% |
| TGAAGATGAGGCCTCCCTAA+TGG | - | chr8_1:68910407-68910426 | Msa1210160:intron | 50.0% | |
| TGACCAAGGGAAAAGCTCAG+AGG | - | chr8_1:68910841-68910860 | Msa1210160:CDS | 50.0% | |
| ! | TCTCCTCTGAGCTTTTCCCT+TGG | + | chr8_1:68910847-68910866 | None:intergenic | 50.0% |
| AGGGAAAAGCTCAGAGGAGA+TGG | - | chr8_1:68910847-68910866 | Msa1210160:CDS | 50.0% | |
| AGCTCAGAGGAGATGGAGAA+AGG | - | chr8_1:68910854-68910873 | Msa1210160:CDS | 50.0% | |
| GTCGTTGTGGAATGTCTGCC+AGG | - | chr8_1:68907694-68907713 | Msa1210160:CDS | 55.0% | |
| !! | GGAGCCAATTCTAGAGCCCT+TGG | - | chr8_1:68908116-68908135 | Msa1210160:CDS | 55.0% |
| CATACCACTCGGCGAACCAA+GGG | + | chr8_1:68908135-68908154 | None:intergenic | 55.0% | |
| TCATACCACTCGGCGAACCA+AGG | + | chr8_1:68908136-68908155 | None:intergenic | 55.0% | |
| !!! | GGAGGAGCTGGTTTGGGTTT+TGG | - | chr8_1:68908443-68908462 | Msa1210160:CDS | 55.0% |
| GGACAAGGAGTCGTAGGTTC+AGG | - | chr8_1:68909102-68909121 | Msa1210160:CDS | 55.0% | |
| AGGAGTCGTAGGTTCAGGCT+TGG | - | chr8_1:68909107-68909126 | Msa1210160:CDS | 55.0% | |
| GGAGTCGTAGGTTCAGGCTT+GGG | - | chr8_1:68909108-68909127 | Msa1210160:CDS | 55.0% | |
| GAGTCGTAGGTTCAGGCTTG+GGG | - | chr8_1:68909109-68909128 | Msa1210160:CDS | 55.0% | |
| ACACCACCCTCCAAGTCTGT+CGG | - | chr8_1:68909687-68909706 | Msa1210160:intron | 55.0% | |
| CTTACAGTTCGCAGCTTCGC+TGG | + | chr8_1:68909823-68909842 | None:intergenic | 55.0% | |
| AATGCCGTGGGAGAAGTGAC+AGG | - | chr8_1:68910181-68910200 | Msa1210160:intron | 55.0% | |
| ! | CAGTCCTGTCACTTCTCCCA+CGG | + | chr8_1:68910188-68910207 | None:intergenic | 55.0% |
| GATGAGGCCTCCCTAATGGA+TGG | - | chr8_1:68910411-68910430 | Msa1210160:intron | 55.0% | |
| CAGGCTTGGGGCAAGAGTTG+TGG | - | chr8_1:68909121-68909140 | Msa1210160:CDS | 60.0% | |
| CATCCGACAGACTTGGAGGG+TGG | + | chr8_1:68909693-68909712 | None:intergenic | 60.0% | |
| CTCGGTTCTCGGAGAGCTTG+GGG | + | chr8_1:68910466-68910485 | None:intergenic | 60.0% | |
| CCTCGGTTCTCGGAGAGCTT+GGG | + | chr8_1:68910467-68910486 | None:intergenic | 60.0% | |
| CCAAGCTCTCCGAGAACCGA+GGG | - | chr8_1:68910465-68910484 | Msa1210160:intron | 60.0% | |
| CTTGTTGGCGCTCGATCCCT+CGG | + | chr8_1:68910484-68910503 | None:intergenic | 60.0% | |
| ! | AGAGCCCTTGGTTCGCCGAG+TGG | - | chr8_1:68908128-68908147 | Msa1210160:CDS | 65.0% |
| CCCAAGCTCTCCGAGAACCG+AGG | - | chr8_1:68910464-68910483 | Msa1210160:intron | 65.0% | |
| CCCTCGGTTCTCGGAGAGCT+TGG | + | chr8_1:68910468-68910487 | None:intergenic | 65.0% | |
| GCGCTCGATCCCTCGGTTCT+CGG | + | chr8_1:68910477-68910496 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 68906980 | 68911283 | 68906980 | ID=Msa1210160;Name=Msa1210160 |
| chr8_1 | mRNA | 68906980 | 68911283 | 68906980 | ID=Msa1210160-mRNA-1;Parent=Msa1210160;Name=Msa1210160-mRNA-1;_AED=0.09;_eAED=0.09;_QI=389|0.83|0.85|1|1|1|7|348|538 |
| chr8_1 | exon | 68906980 | 68907912 | 68906980 | ID=Msa1210160-mRNA-1:exon:23041;Parent=Msa1210160-mRNA-1 |
| chr8_1 | exon | 68908032 | 68908208 | 68908032 | ID=Msa1210160-mRNA-1:exon:23040;Parent=Msa1210160-mRNA-1 |
| chr8_1 | exon | 68908426 | 68908586 | 68908426 | ID=Msa1210160-mRNA-1:exon:23039;Parent=Msa1210160-mRNA-1 |
| chr8_1 | exon | 68909048 | 68909535 | 68909048 | ID=Msa1210160-mRNA-1:exon:23038;Parent=Msa1210160-mRNA-1 |
| chr8_1 | exon | 68909698 | 68909750 | 68909698 | ID=Msa1210160-mRNA-1:exon:23037;Parent=Msa1210160-mRNA-1 |
| chr8_1 | exon | 68910114 | 68910192 | 68910114 | ID=Msa1210160-mRNA-1:exon:23036;Parent=Msa1210160-mRNA-1 |
| chr8_1 | exon | 68910821 | 68911283 | 68910821 | ID=Msa1210160-mRNA-1:exon:23035;Parent=Msa1210160-mRNA-1 |
| chr8_1 | five_prime_UTR | 68910895 | 68911283 | 68910895 | ID=Msa1210160-mRNA-1:five_prime_utr;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68910821 | 68910894 | 68910821 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68910114 | 68910192 | 68910114 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68909698 | 68909750 | 68909698 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68909048 | 68909535 | 68909048 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68908426 | 68908586 | 68908426 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68908032 | 68908208 | 68908032 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | CDS | 68907328 | 68907912 | 68907328 | ID=Msa1210160-mRNA-1:cds;Parent=Msa1210160-mRNA-1 |
| chr8_1 | three_prime_UTR | 68906980 | 68907327 | 68906980 | ID=Msa1210160-mRNA-1:three_prime_utr;Parent=Msa1210160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
