AlfalfaGEDB | Msa1210990

M. sativa cultivar zhongmu-4 / Msa1210990

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210990	sp\|Q9SB04\|ARR5_ARATH	65.922	179	57	3	5	180	2	179	1.91e-74	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210990	G7JNT1	97.674	215	3	1	1	213	1	215	1.49e-145	413

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TFs/TRs:

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Gene ID	Type	Classification
Msa1210990	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1210990	Msa1299140	0.862563	4.638220e-64	-8.615850e-47
Msa1210990	Msa1334870	0.971577	2.208869e-133	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210990	MtrunA17_Chr4g0059571	97.209	215	3	2	1	213	1	214	2.21e-146	406
Msa1210990	MtrunA17_Chr3g0118211	71.028	214	47	6	1	213	1	200	4.19e-95	276
Msa1210990	MtrunA17_Chr5g0414931	71.528	144	36	2	25	164	15	157	4.01e-63	196
Msa1210990	MtrunA17_Chr1g0170741	69.718	142	39	2	21	159	3	143	8.48e-62	191
Msa1210990	MtrunA17_Chr7g0256551	55.215	163	63	3	21	174	4	165	8.62e-55	174
Msa1210990	MtrunA17_Chr8g0352871	55.090	167	64	3	21	178	4	168	3.21e-53	168
Msa1210990	MtrunA17_Chr3g0082861	52.381	168	62	3	24	178	2	164	9.41e-50	159
Msa1210990	MtrunA17_Chr3g0128691	58.647	133	50	2	27	156	19	149	1.71e-48	155
Msa1210990	MtrunA17_Chr3g0124861	50.667	150	54	3	25	156	21	168	4.54e-44	147
Msa1210990	MtrunA17_Chr4g0021731	55.682	88	39	0	16	103	1	88	3.51e-25	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1210990	AT3G48100.1	65.922	179	57	3	5	180	2	179	1.94e-75	226
Msa1210990	AT5G62920.1	73.203	153	40	1	26	178	25	176	5.79e-72	217
Msa1210990	AT1G74890.1	72.483	149	37	3	25	170	17	164	6.17e-68	207
Msa1210990	AT1G59940.1	58.000	200	73	4	16	206	23	220	5.27e-67	206
Msa1210990	AT1G19050.1	63.158	171	46	4	3	167	2	161	2.84e-66	203
Msa1210990	AT1G10470.3	72.340	141	38	1	16	156	10	149	1.02e-65	203
Msa1210990	AT1G59940.2	58.000	200	73	4	16	206	115	312	1.45e-65	205
Msa1210990	AT1G10470.1	72.340	141	38	1	16	156	24	163	2.50e-65	202
Msa1210990	AT2G40670.2	62.222	135	48	1	25	156	28	162	2.19e-55	174
Msa1210990	AT3G56380.2	62.406	133	49	1	25	156	19	151	8.12e-55	172

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Find 56 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGAAATGAAAGAGT+GGG	0.574293	8_1:-70356895	None:intergenic
AAAGAAAGTAAACTGATTTG+TGG	0.465250	8_1:-70356772	None:intergenic
AAATGAGAAATGAAAGAGTG+GGG	0.614893	8_1:-70356894	None:intergenic
AAGAAAGTAAACTGATTTGT+GGG	0.433428	8_1:-70356771	None:intergenic
AATAAATAGTGAAATAAAAT+GGG	0.412992	8_1:-70356808	None:intergenic
AATGACGGATTATTCCATGC+CGG	0.601249	8_1:+70357448	Msa1210990:CDS
AATGAGAAATGAAAGAGTGG+GGG	0.683813	8_1:-70356893	None:intergenic
AATTCATATCCTGTCATCCC+CGG	0.556181	8_1:-70357467	None:intergenic
ACTAATTTGCAGGTGTTTGG+AGG	0.520826	8_1:+70358607	Msa1210990:intron
AGAAAGTAAACTGATTTGTG+GGG	0.664841	8_1:-70356770	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTAGGAAAGAGAAAATGAA+GGG	-	chr8_1:70356857-70356876	None:intergenic	30.0%
GTTATATTTACATGAGCGTT+AGG	-	chr8_1:70356874-70356893	None:intergenic	30.0%
AAATGAGAAATGAAAGAGTG+GGG	-	chr8_1:70356897-70356916	None:intergenic	30.0%
GAAAATGAGAAATGAAAGAG+TGG	-	chr8_1:70356899-70356918	None:intergenic	30.0%
GAAAAGAAACTGAAAAACAC+AGG	-	chr8_1:70356932-70356951	None:intergenic	30.0%
TTGAAGATTTCTTCATGCAA+AGG	+	chr8_1:70357128-70357147	Msa1210990:CDS	30.0%
TGGTGAATAACATGTGTATT+TGG	+	chr8_1:70357773-70357792	Msa1210990:intron	30.0%
GCAGATTAGATGCATATTTA+TGG	-	chr8_1:70357868-70357887	None:intergenic	30.0%
TTATGCCTCCATATCTATTT+GGG	-	chr8_1:70357924-70357943	None:intergenic	30.0%
TGTTTCAAATCACTCAGATA+GGG	+	chr8_1:70358063-70358082	Msa1210990:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	70356773	70359049	70356773	ID=Msa1210990;Name=Msa1210990
chr8_1	mRNA	70356773	70359049	70356773	ID=Msa1210990-mRNA-1;Parent=Msa1210990;Name=Msa1210990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=223\|0.75\|0.8\|1\|1\|1\|5\|172\|213
chr8_1	exon	70356773	70357149	70356773	ID=Msa1210990-mRNA-1:exon:23510;Parent=Msa1210990-mRNA-1
chr8_1	exon	70357254	70357330	70357254	ID=Msa1210990-mRNA-1:exon:23511;Parent=Msa1210990-mRNA-1
chr8_1	exon	70357428	70357505	70357428	ID=Msa1210990-mRNA-1:exon:23512;Parent=Msa1210990-mRNA-1
chr8_1	exon	70357650	70357723	70357650	ID=Msa1210990-mRNA-1:exon:23513;Parent=Msa1210990-mRNA-1
chr8_1	exon	70358619	70359049	70358619	ID=Msa1210990-mRNA-1:exon:23514;Parent=Msa1210990-mRNA-1
chr8_1	five_prime_UTR	70356773	70356995	70356773	ID=Msa1210990-mRNA-1:five_prime_utr;Parent=Msa1210990-mRNA-1
chr8_1	CDS	70356996	70357149	70356996	ID=Msa1210990-mRNA-1:cds;Parent=Msa1210990-mRNA-1
chr8_1	CDS	70357254	70357330	70357254	ID=Msa1210990-mRNA-1:cds;Parent=Msa1210990-mRNA-1
chr8_1	CDS	70357428	70357505	70357428	ID=Msa1210990-mRNA-1:cds;Parent=Msa1210990-mRNA-1
chr8_1	CDS	70357650	70357723	70357650	ID=Msa1210990-mRNA-1:cds;Parent=Msa1210990-mRNA-1
chr8_1	CDS	70358619	70358877	70358619	ID=Msa1210990-mRNA-1:cds;Parent=Msa1210990-mRNA-1
chr8_1	three_prime_UTR	70358878	70359049	70358878	ID=Msa1210990-mRNA-1:three_prime_utr;Parent=Msa1210990-mRNA-1

Gene Sequence

>Msa1210990

ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACGGAGTTGATGGAGGAATCACCTTCAGGTGCAGGTGAATTGCATGTGCTTGCTGTTGATGATAGTCTTGTTGATCGTAAAGTGATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTTGAGAGTGCAAGAAGAGCTCTCCAGTTTTTGGGATTGGATGGAGAGAACAGTGATGTTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCGGGGATGACAGGATATGAATTACTCAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGTTTGGAGGAAGGAGCAGAGGATTTTTTGTTGAAGCCAGTCAAATTGTCAGATGTAAGACGCCTGAAAGATTTTATCATGAGAGGTGAAGTGAAGGATGGTGAGAAATGTTCTCTCAAAAGAATGCGATCATCAGATGATTGTAGTCCATCTCTATCAACTACATTCTCACCAATGCGTCATTCATGTGATCCACCATCGTCAGTGTTCTCACCACTCTCGCCATCAACATTATCCTCTAAGAAATCAAGATTATGA

Protein sequence

>Msa1210990

MAAAGEIFRSNLTELMEESPSGAGELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQFLGLDGENSDVGFDGVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGEKCSLKRMRSSDDCSPSLSTTFSPMRHSCDPPSSVFSPLSPSTLSSKKSRL*