Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1212260 | XP_013457920.1 | 96.951 | 492 | 15 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1212260 | sp|Q0V842|NEN2_ARATH | 56.914 | 499 | 191 | 7 | 1 | 490 | 4 | 487 | 0.0 | 535 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1212260 | A0A072URH4 | 96.951 | 492 | 15 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1212180 | Msa1212260 | 0.923742 | 1.776503e-89 | -8.615850e-47 |
Msa1212260 | Msa1259900 | 0.987616 | 6.635328e-171 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1212260 | MtrunA17_Chr4g0061011 | 96.951 | 492 | 15 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
Msa1212260 | MtrunA17_Chr8g0382661 | 62.621 | 206 | 74 | 1 | 12 | 214 | 16 | 221 | 7.61e-88 | 270 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1212260 | AT5G61390.1 | 56.914 | 499 | 191 | 7 | 1 | 490 | 4 | 487 | 0.0 | 535 |
Msa1212260 | AT5G07710.1 | 55.967 | 486 | 189 | 7 | 8 | 490 | 4 | 467 | 1.55e-179 | 512 |
Msa1212260 | AT1G74390.1 | 53.815 | 498 | 211 | 4 | 8 | 489 | 8 | 502 | 6.49e-173 | 496 |
Msa1212260 | AT1G74390.2 | 53.815 | 498 | 211 | 4 | 8 | 489 | 8 | 502 | 6.49e-173 | 496 |
Msa1212260 | AT1G74390.3 | 47.765 | 358 | 168 | 4 | 148 | 489 | 1 | 355 | 1.59e-95 | 293 |
Msa1212260 | AT1G74390.4 | 47.472 | 356 | 168 | 4 | 150 | 489 | 1 | 353 | 9.80e-94 | 289 |
Msa1212260 | AT4G39810.1 | 62.687 | 201 | 75 | 0 | 11 | 211 | 8 | 208 | 1.07e-85 | 265 |
Find 121 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTACTCTTGCTACCTATTT+TGG | 0.169699 | 8_1:+72105447 | Msa1212260:CDS |
ATATATTTCTGTTGCGTAAA+TGG | 0.185111 | 8_1:-72106830 | None:intergenic |
TTATCTTGAGTTTCAGTTTC+AGG | 0.200693 | 8_1:-72106134 | None:intergenic |
CCATTTCAGCTTCATTGTTC+TGG | 0.219236 | 8_1:+72106464 | Msa1212260:CDS |
ATTGGAGGCCAGTTGTTATT+AGG | 0.257879 | 8_1:+72106645 | Msa1212260:CDS |
TCTCTTGTTCCATCTTATTA+TGG | 0.268745 | 8_1:+72106407 | Msa1212260:CDS |
TTCACTCATCACTCCGTTAT+CGG | 0.283917 | 8_1:+72104389 | Msa1212260:CDS |
GCAATGAATGGTCAATTTCT+TGG | 0.292445 | 8_1:-72107007 | None:intergenic |
CTGTGCAACAGTTCTATTCT+TGG | 0.303572 | 8_1:+72105623 | Msa1212260:CDS |
GTTTATCCTTGTAATCTATA+TGG | 0.307589 | 8_1:-72107203 | None:intergenic |
CCAGAACAATGAAGCTGAAA+TGG | 0.309859 | 8_1:-72106464 | None:intergenic |
TCAGAATGCAGGGATTAAAT+TGG | 0.313072 | 8_1:+72106981 | Msa1212260:CDS |
TAAGGGTTTGATCGACTCTT+TGG | 0.322291 | 8_1:+72104811 | Msa1212260:CDS |
CGACTTCTTGTAACAGCATT+TGG | 0.324821 | 8_1:-72106065 | None:intergenic |
ACAAGAATTCAGAAATGTTC+TGG | 0.353071 | 8_1:-72104166 | None:intergenic |
CGAAGCTCCGTCAACTTCCT+TGG | 0.356669 | 8_1:-72104333 | None:intergenic |
CCGGCCACGGTTAAACTTTG+TGG | 0.358516 | 8_1:+72106535 | Msa1212260:CDS |
GACCATTCATTGCAACTAGA+AGG | 0.364238 | 8_1:+72107017 | Msa1212260:exon |
CTTGATTCCTTGTTCAAGCC+TGG | 0.376675 | 8_1:+72106913 | Msa1212260:CDS |
TTGCTGCCCAAGACCAAAAT+AGG | 0.381690 | 8_1:-72105460 | None:intergenic |
CGTTCCGACCCGACCCGGTC+AGG | 0.385412 | 8_1:+72104272 | Msa1212260:CDS |
GGCAAAACCCTGACCGGGTC+GGG | 0.387039 | 8_1:-72104280 | None:intergenic |
CCGTTACATCGTTCCGATAA+CGG | 0.394839 | 8_1:-72104402 | None:intergenic |
AATGGCTCCGAATTCCAAAA+TGG | 0.397194 | 8_1:-72104301 | None:intergenic |
CGCAAGTTATCCTCAGAATC+TGG | 0.402038 | 8_1:+72106611 | Msa1212260:CDS |
TATATTCACTGAAAATTGTT+GGG | 0.410842 | 8_1:+72106037 | Msa1212260:CDS |
TTCCTTCTAGTTGCAATGAA+TGG | 0.413016 | 8_1:-72107019 | None:intergenic |
CCAGTTGTTATTAGGAAAGA+AGG | 0.415626 | 8_1:+72106653 | Msa1212260:CDS |
GAACTGTTGCACAGTATTTG+AGG | 0.416121 | 8_1:-72105614 | None:intergenic |
AGCCTCATCTTCTGTGCATC+AGG | 0.420868 | 8_1:+72106322 | Msa1212260:CDS |
TTCAGAAATGTTCTGGTACT+AGG | 0.425729 | 8_1:-72104159 | None:intergenic |
CCTTCTTTCCTAATAACAAC+TGG | 0.442874 | 8_1:-72106653 | None:intergenic |
TTACAAGAAGTCGCAGTAAC+GGG | 0.449771 | 8_1:+72106075 | Msa1212260:CDS |
CGGAGTGATGAGTGAAAGTT+CGG | 0.453505 | 8_1:-72104382 | None:intergenic |
ATATATTCACTGAAAATTGT+TGG | 0.453559 | 8_1:+72106036 | Msa1212260:CDS |
TCGATCAAACCCTTAGGTTC+AGG | 0.456957 | 8_1:-72104803 | None:intergenic |
ACTTACTGCAATCTGATAGT+AGG | 0.458699 | 8_1:-72106689 | None:intergenic |
TGCTGCTTGTTGCAAGAGAA+AGG | 0.461836 | 8_1:-72106169 | None:intergenic |
AGATTGAAGCGTAGATTAGA+TGG | 0.462446 | 8_1:+72107046 | Msa1212260:three_prime_UTR |
GCCGTCTATGACCTTCTTCA+CGG | 0.464019 | 8_1:+72104477 | Msa1212260:CDS |
CAAAATGGCAAAACCCTGAC+CGG | 0.464089 | 8_1:-72104286 | None:intergenic |
TCAGGAGCTTAGATGATGTT+CGG | 0.464792 | 8_1:+72105577 | Msa1212260:intron |
TCTATATGGAGTTGAGCATA+TGG | 0.464933 | 8_1:-72107189 | None:intergenic |
ACAGCCACCGCCTGAACCTA+AGG | 0.465007 | 8_1:+72104793 | Msa1212260:CDS |
TTGATAGTGCTGGCCGGCCA+CGG | 0.465393 | 8_1:+72106522 | Msa1212260:CDS |
AATCTGGTAGCGGCTCTGAT+TGG | 0.473924 | 8_1:+72106627 | Msa1212260:CDS |
TACTAGGAAATAAATGTACT+TGG | 0.479518 | 8_1:-72104143 | None:intergenic |
ACAAAGTTTGTTGATAGTGC+TGG | 0.479560 | 8_1:+72106512 | Msa1212260:CDS |
TCTGGTTTGAAAGTGCGGTT+TGG | 0.485291 | 8_1:+72106482 | Msa1212260:CDS |
CAGAACAATGAAGCTGAAAT+GGG | 0.488231 | 8_1:-72106463 | None:intergenic |
TATGACTATCATCAGAATGC+AGG | 0.494678 | 8_1:+72106970 | Msa1212260:CDS |
CAAAAGTTTGGAAGAAGAGC+TGG | 0.497150 | 8_1:+72104845 | Msa1212260:CDS |
TTGATTCCTTGTTCAAGCCT+GGG | 0.497172 | 8_1:+72106914 | Msa1212260:CDS |
GAAATAAATGTACTTGGCTA+AGG | 0.499314 | 8_1:-72104137 | None:intergenic |
GCTTCGAAACTACTCAACTT+TGG | 0.501482 | 8_1:+72104350 | Msa1212260:CDS |
TTGAAGCTCACGGAAGCTAA+AGG | 0.502180 | 8_1:-72106222 | None:intergenic |
ATCAGCAAAGGTAGGAGCGT+TGG | 0.504280 | 8_1:-72104445 | None:intergenic |
GAAGATGAGGCTGCTGAACC+AGG | 0.514934 | 8_1:-72106311 | None:intergenic |
AGGATAGAATTACATCATGA+AGG | 0.518374 | 8_1:+72106437 | Msa1212260:CDS |
CTTTGACTGCCATAATAAGA+TGG | 0.520227 | 8_1:-72106416 | None:intergenic |
CTGGTAGCGGCTCTGATTGG+AGG | 0.524236 | 8_1:+72106630 | Msa1212260:CDS |
GTTCCGACCCGACCCGGTCA+GGG | 0.524671 | 8_1:+72104273 | Msa1212260:CDS |
AATCATCTGGATTTGTGCAA+AGG | 0.525281 | 8_1:+72106860 | Msa1212260:CDS |
CATCTTATTATGGCAGTCAA+AGG | 0.535720 | 8_1:+72106417 | Msa1212260:CDS |
CCACAAAGTTTAACCGTGGC+CGG | 0.539578 | 8_1:-72106535 | None:intergenic |
CTTCCTTGGACAAACAAGAA+TGG | 0.541331 | 8_1:-72104319 | None:intergenic |
AAAGAGTCGATCAAACCCTT+AGG | 0.543678 | 8_1:-72104809 | None:intergenic |
CGGGAAATCACGGCCAGAAG+GGG | 0.544051 | 8_1:+72106094 | Msa1212260:CDS |
AACGGGAAATCACGGCCAGA+AGG | 0.548226 | 8_1:+72106092 | Msa1212260:CDS |
GAGCCATTCTTGTTTGTCCA+AGG | 0.549208 | 8_1:+72104316 | Msa1212260:CDS |
TCAAGAACATTACATAAACT+TGG | 0.549671 | 8_1:-72106569 | None:intergenic |
TATGAAGCGAACCGTGAAGA+AGG | 0.552205 | 8_1:-72104488 | None:intergenic |
ATTGTTCTGGTTTGAAAGTG+CGG | 0.557422 | 8_1:+72106477 | Msa1212260:CDS |
TGTTTGTCCAAGGAAGTTGA+CGG | 0.563235 | 8_1:+72104326 | Msa1212260:CDS |
CTGACCGGGTCGGGTCGGAA+CGG | 0.564383 | 8_1:-72104271 | None:intergenic |
AAATTAATAGAGAATCCGTT+AGG | 0.565242 | 8_1:+72106249 | Msa1212260:CDS |
AATCTTTGCAAGAGAAACAA+TGG | 0.568170 | 8_1:-72107103 | None:intergenic |
GTTACAAGAAGTCGCAGTAA+CGG | 0.569792 | 8_1:+72106074 | Msa1212260:CDS |
ACGGGAAATCACGGCCAGAA+GGG | 0.570522 | 8_1:+72106093 | Msa1212260:CDS |
CTTGTTGCAAGAGAAAGGAT+TGG | 0.571982 | 8_1:-72106164 | None:intergenic |
GTCGCAGTAACGGGAAATCA+CGG | 0.575047 | 8_1:+72106084 | Msa1212260:CDS |
CATGGCTACATCTGTCCTAA+CGG | 0.575326 | 8_1:-72106264 | None:intergenic |
GGTTAATCTATCAATTCTGA+TGG | 0.576569 | 8_1:-72107082 | None:intergenic |
TCATCTTCTGTGCATCAGGC+CGG | 0.578173 | 8_1:+72106326 | Msa1212260:CDS |
TTGTGCAGGGAGGATTTGGG+CGG | 0.582583 | 8_1:+72104712 | Msa1212260:intron |
AAACCCTTAGGTTCAGGCGG+TGG | 0.584405 | 8_1:-72104797 | None:intergenic |
ACCGGGTCGGGTCGGAACGG+TGG | 0.585225 | 8_1:-72104268 | None:intergenic |
ACATTACATAAACTTGGTGA+TGG | 0.585353 | 8_1:-72106563 | None:intergenic |
TCAACTCCATATAGATTACA+AGG | 0.590237 | 8_1:+72107197 | Msa1212260:three_prime_UTR |
TGAGTGAAAGTTCGGAGGGT+CGG | 0.593095 | 8_1:-72104374 | None:intergenic |
TGGCAAAACCCTGACCGGGT+CGG | 0.593613 | 8_1:-72104281 | None:intergenic |
ATCTCTTCACATACTGCTGT+AGG | 0.599633 | 8_1:-72106805 | None:intergenic |
ATGACTATCATCAGAATGCA+GGG | 0.600817 | 8_1:+72106971 | Msa1212260:CDS |
TTATCCTCAGAATCTGGTAG+CGG | 0.601161 | 8_1:+72106617 | Msa1212260:CDS |
TGAACCAGGTGAATATTGTA+TGG | 0.606211 | 8_1:-72106297 | None:intergenic |
ACTGCATCAACAAAAGTCCC+AGG | 0.606468 | 8_1:-72106931 | None:intergenic |
AAACCCTGACCGGGTCGGGT+CGG | 0.607699 | 8_1:-72104276 | None:intergenic |
AAGAAGAGCTGGTAACATGA+AGG | 0.607820 | 8_1:+72104856 | Msa1212260:CDS |
AAAAGTCCCAGGCTTGAACA+AGG | 0.615128 | 8_1:-72106920 | None:intergenic |
GTGATGAGTGAAAGTTCGGA+GGG | 0.615353 | 8_1:-72104378 | None:intergenic |
CGTTAGGACAGATGTAGCCA+TGG | 0.617479 | 8_1:+72106265 | Msa1212260:CDS |
AACAGCAATAGAGCTGCTGC+CGG | 0.617637 | 8_1:-72106345 | None:intergenic |
GGGAAATCACGGCCAGAAGG+GGG | 0.629891 | 8_1:+72106095 | Msa1212260:CDS |
AGAGCCGCTACCAGATTCTG+AGG | 0.631582 | 8_1:-72106621 | None:intergenic |
TGTGCAGGGAGGATTTGGGC+GGG | 0.632991 | 8_1:+72104713 | Msa1212260:intron |
CAGCCACCGCCTGAACCTAA+GGG | 0.635006 | 8_1:+72104794 | Msa1212260:CDS |
CCGTTATCGGAACGATGTAA+CGG | 0.636088 | 8_1:+72104402 | Msa1212260:CDS |
GGCGTGAGCAATATCAGCAA+AGG | 0.636460 | 8_1:-72104457 | None:intergenic |
GGCCTGATGCACAGAAGATG+AGG | 0.637574 | 8_1:-72106324 | None:intergenic |
AAAATGGCAAAACCCTGACC+GGG | 0.637699 | 8_1:-72104285 | None:intergenic |
AGTTTGTTGATAGTGCTGGC+CGG | 0.638222 | 8_1:+72106516 | Msa1212260:CDS |
TGAGCAATATCAGCAAAGGT+AGG | 0.643892 | 8_1:-72104453 | None:intergenic |
CTATCAATTCTGATGGCACG+AGG | 0.647718 | 8_1:-72107075 | None:intergenic |
ATCAAACCCTTAGGTTCAGG+CGG | 0.649042 | 8_1:-72104800 | None:intergenic |
AAATCCATACAATATTCACC+TGG | 0.654350 | 8_1:+72106293 | Msa1212260:CDS |
AGTGATGAGTGAAAGTTCGG+AGG | 0.655173 | 8_1:-72104379 | None:intergenic |
GTCTTGGGCAGCAAACACAC+AGG | 0.668051 | 8_1:+72105469 | Msa1212260:CDS |
ACCGTGAAGAAGGTCATAGA+CGG | 0.669934 | 8_1:-72104478 | None:intergenic |
TTTATTCATTTGTTTAAACG+CGG | 0.683638 | 8_1:-72104066 | None:intergenic |
TCTGATCGATCATCGCTGAG+AGG | 0.700110 | 8_1:-72104222 | None:intergenic |
TCAACCACAAAGTTTAACCG+TGG | 0.732512 | 8_1:-72106539 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATCTTTTCTTTTAAATGTT+AGG | + | chr8_1:72104532-72104551 | Msa1212260:intron | 15.0% |
!!! | ATCTTTTCTTTTAAATGTTA+GGG | + | chr8_1:72104533-72104552 | Msa1212260:intron | 15.0% |
!!! | CTCTTTAAAATTAATTAGAA+TGG | - | chr8_1:72105760-72105779 | None:intergenic | 15.0% |
!! | TTTATTCATTTGTTTAAACG+CGG | - | chr8_1:72104069-72104088 | None:intergenic | 20.0% |
!! | TATATGCTTATTACATTCAT+AGG | + | chr8_1:72104905-72104924 | Msa1212260:intron | 20.0% |
!! | ATATGCTTATTACATTCATA+GGG | + | chr8_1:72104906-72104925 | Msa1212260:intron | 20.0% |
!! | TATCATAAGCAAAAAGAAAA+TGG | - | chr8_1:72105546-72105565 | None:intergenic | 20.0% |
!!! | TTTTAAAGAGAAAAAAAGTG+TGG | + | chr8_1:72105770-72105789 | Msa1212260:intron | 20.0% |
!! | ATATATTCACTGAAAATTGT+TGG | + | chr8_1:72106036-72106055 | Msa1212260:CDS | 20.0% |
!! | TATATTCACTGAAAATTGTT+GGG | + | chr8_1:72106037-72106056 | Msa1212260:CDS | 20.0% |
!!! | AGAAGACATTGATATTTTTT+CGG | - | chr8_1:72106378-72106397 | None:intergenic | 20.0% |
!! | ATATATCAAAAAGAATCATC+TGG | + | chr8_1:72106847-72106866 | Msa1212260:CDS | 20.0% |
!!! | GTTCACATTTATAAATTTTC+TGG | + | chr8_1:72107153-72107172 | Msa1212260:three_prime_UTR | 20.0% |
! | TACTAGGAAATAAATGTACT+TGG | - | chr8_1:72104146-72104165 | None:intergenic | 25.0% |
! | TGCTTTCAATTTCGAAAAAT+GGG | + | chr8_1:72104192-72104211 | Msa1212260:exon | 25.0% |
! | TTGCAAATTATTACATTTGC+AGG | + | chr8_1:72104625-72104644 | Msa1212260:intron | 25.0% |
! | AATGCTTTGTAGGTTAATTA+GGG | + | chr8_1:72104673-72104692 | Msa1212260:intron | 25.0% |
! | ATGAATCATTTCTACAACAA+TGG | - | chr8_1:72105693-72105712 | None:intergenic | 25.0% |
! | TAGAATACTAAATATCTGGA+AGG | - | chr8_1:72105945-72105964 | None:intergenic | 25.0% |
! | TCCAGATATTTAGTATTCTA+TGG | + | chr8_1:72105945-72105964 | Msa1212260:intron | 25.0% |
!! | ATTATCATCATTTTCACCAT+AGG | - | chr8_1:72105984-72106003 | None:intergenic | 25.0% |
!! | CAATTTTCAGTGAATATATC+TGG | - | chr8_1:72106035-72106054 | None:intergenic | 25.0% |
! | AAATTAATAGAGAATCCGTT+AGG | + | chr8_1:72106249-72106268 | Msa1212260:CDS | 25.0% |
!!! | GAAGACATTGATATTTTTTC+GGG | - | chr8_1:72106377-72106396 | None:intergenic | 25.0% |
! | TCAAGAACATTACATAAACT+TGG | - | chr8_1:72106572-72106591 | None:intergenic | 25.0% |
!! | ATATATTTCTGTTGCGTAAA+TGG | - | chr8_1:72106833-72106852 | None:intergenic | 25.0% |
!!! | ATAAATTTTCTGGTTACTCA+TGG | + | chr8_1:72107163-72107182 | Msa1212260:three_prime_UTR | 25.0% |
GAAATAAATGTACTTGGCTA+AGG | - | chr8_1:72104140-72104159 | None:intergenic | 30.0% | |
ACAAGAATTCAGAAATGTTC+TGG | - | chr8_1:72104169-72104188 | None:intergenic | 30.0% | |
CTGCTTTCAATTTCGAAAAA+TGG | + | chr8_1:72104191-72104210 | Msa1212260:exon | 30.0% | |
! | TATTACATTTGCAGGTTTTG+AGG | + | chr8_1:72104633-72104652 | Msa1212260:intron | 30.0% |
CAATGCTTTGTAGGTTAATT+AGG | + | chr8_1:72104672-72104691 | Msa1212260:intron | 30.0% | |
TGTAGGTTAATTAGGGTTAA+TGG | + | chr8_1:72104680-72104699 | Msa1212260:intron | 30.0% | |
!!! | GTTTTGTTGACTCAAAAGTT+TGG | + | chr8_1:72104833-72104852 | Msa1212260:CDS | 30.0% |
AAAGTTATTCCAAACAGAAG+TGG | + | chr8_1:72105108-72105127 | Msa1212260:intron | 30.0% | |
! | CAATTTTATCCACTTCTGTT+TGG | - | chr8_1:72105120-72105139 | None:intergenic | 30.0% |
CAATCACGTAATCAATTCAT+TGG | + | chr8_1:72105151-72105170 | Msa1212260:intron | 30.0% | |
!!! | ACTAGAGCATTACACTTTTT+TGG | + | chr8_1:72105353-72105372 | Msa1212260:intron | 30.0% |
!!! | CTAGAGCATTACACTTTTTT+GGG | + | chr8_1:72105354-72105373 | Msa1212260:intron | 30.0% |
!!! | TTACACTTTTTTGGGAATGA+AGG | + | chr8_1:72105362-72105381 | Msa1212260:intron | 30.0% |
TATGATATAGTTGCATCTTC+AGG | + | chr8_1:72105559-72105578 | Msa1212260:intron | 30.0% | |
TTGTTTGCAAAGACTTAACA+AGG | - | chr8_1:72105662-72105681 | None:intergenic | 30.0% | |
GCCATAGAATACTAAATATC+TGG | - | chr8_1:72105949-72105968 | None:intergenic | 30.0% | |
GATAATATCTCTGTCTTTAC+AGG | + | chr8_1:72105998-72106017 | Msa1212260:intron | 30.0% | |
TTATCTTGAGTTTCAGTTTC+AGG | - | chr8_1:72106137-72106156 | None:intergenic | 30.0% | |
!!! | TAATTTCGTTTTGAAGCTCA+CGG | - | chr8_1:72106235-72106254 | None:intergenic | 30.0% |
! | TTGTATGGATTTTTCATCCA+TGG | - | chr8_1:72106285-72106304 | None:intergenic | 30.0% |
AAATCCATACAATATTCACC+TGG | + | chr8_1:72106293-72106312 | Msa1212260:CDS | 30.0% | |
TCTCTTGTTCCATCTTATTA+TGG | + | chr8_1:72106407-72106426 | Msa1212260:CDS | 30.0% | |
AGGATAGAATTACATCATGA+AGG | + | chr8_1:72106437-72106456 | Msa1212260:CDS | 30.0% | |
! | ACATTACATAAACTTGGTGA+TGG | - | chr8_1:72106566-72106585 | None:intergenic | 30.0% |
GGTTAATCTATCAATTCTGA+TGG | - | chr8_1:72107085-72107104 | None:intergenic | 30.0% | |
AATCTTTGCAAGAGAAACAA+TGG | - | chr8_1:72107106-72107125 | None:intergenic | 30.0% | |
TTCAGAAATGTTCTGGTACT+AGG | - | chr8_1:72104162-72104181 | None:intergenic | 35.0% | |
!!! | GGTTTTGCCATTTTGGAATT+CGG | + | chr8_1:72104294-72104313 | Msa1212260:CDS | 35.0% |
TGTCTTTGTCAATGCTTTGT+AGG | + | chr8_1:72104663-72104682 | Msa1212260:intron | 35.0% | |
AGGTTAATTAGGGTTAATGG+TGG | + | chr8_1:72104683-72104702 | Msa1212260:intron | 35.0% | |
GTAATCGAAGAGAAAATGAG+AGG | + | chr8_1:72105003-72105022 | Msa1212260:intron | 35.0% | |
GAATTGATTACGTGATTGCA+GGG | - | chr8_1:72105149-72105168 | None:intergenic | 35.0% | |
TGAATTGATTACGTGATTGC+AGG | - | chr8_1:72105150-72105169 | None:intergenic | 35.0% | |
! | ATCAATTCATTGGTGACCAT+TGG | + | chr8_1:72105161-72105180 | Msa1212260:intron | 35.0% |
TAAATACCAAGCCTGAAATC+TGG | + | chr8_1:72105235-72105254 | Msa1212260:intron | 35.0% | |
TGTACTGAATGCTTGAATTC+CGG | + | chr8_1:72105289-72105308 | Msa1212260:intron | 35.0% | |
ACGTTTGGAAGGGATAAATT+TGG | - | chr8_1:72105319-72105338 | None:intergenic | 35.0% | |
! | ATGCTCTAGTTTGCATTCAA+GGG | - | chr8_1:72105343-72105362 | None:intergenic | 35.0% |
! | AATGCTCTAGTTTGCATTCA+AGG | - | chr8_1:72105344-72105363 | None:intergenic | 35.0% |
TTTATGTTGTTCACTGCAGA+TGG | + | chr8_1:72105425-72105444 | Msa1212260:intron | 35.0% | |
!!! | TTGCTACCTATTTTGGTCTT+GGG | + | chr8_1:72105454-72105473 | Msa1212260:CDS | 35.0% |
TTCTAAACCTGATGCTTGTT+TGG | + | chr8_1:72105804-72105823 | Msa1212260:intron | 35.0% | |
TGAACCAGGTGAATATTGTA+TGG | - | chr8_1:72106300-72106319 | None:intergenic | 35.0% | |
CTTTGACTGCCATAATAAGA+TGG | - | chr8_1:72106419-72106438 | None:intergenic | 35.0% | |
CATCTTATTATGGCAGTCAA+AGG | + | chr8_1:72106417-72106436 | Msa1212260:CDS | 35.0% | |
CAGAACAATGAAGCTGAAAT+GGG | - | chr8_1:72106466-72106485 | None:intergenic | 35.0% | |
!! | ATTGTTCTGGTTTGAAAGTG+CGG | + | chr8_1:72106477-72106496 | Msa1212260:CDS | 35.0% |
!! | ACAAAGTTTGTTGATAGTGC+TGG | + | chr8_1:72106512-72106531 | Msa1212260:CDS | 35.0% |
CCTTCTTTCCTAATAACAAC+TGG | - | chr8_1:72106656-72106675 | None:intergenic | 35.0% | |
! | CCAGTTGTTATTAGGAAAGA+AGG | + | chr8_1:72106653-72106672 | Msa1212260:CDS | 35.0% |
ACTTACTGCAATCTGATAGT+AGG | - | chr8_1:72106692-72106711 | None:intergenic | 35.0% | |
AATCATCTGGATTTGTGCAA+AGG | + | chr8_1:72106860-72106879 | Msa1212260:CDS | 35.0% | |
TATGACTATCATCAGAATGC+AGG | + | chr8_1:72106970-72106989 | Msa1212260:CDS | 35.0% | |
ATGACTATCATCAGAATGCA+GGG | + | chr8_1:72106971-72106990 | Msa1212260:CDS | 35.0% | |
TCAGAATGCAGGGATTAAAT+TGG | + | chr8_1:72106981-72107000 | Msa1212260:CDS | 35.0% | |
GCAATGAATGGTCAATTTCT+TGG | - | chr8_1:72107010-72107029 | None:intergenic | 35.0% | |
! | TTCCTTCTAGTTGCAATGAA+TGG | - | chr8_1:72107022-72107041 | None:intergenic | 35.0% |
AGATTGAAGCGTAGATTAGA+TGG | + | chr8_1:72107046-72107065 | Msa1212260:three_prime_UTR | 35.0% | |
TCTATATGGAGTTGAGCATA+TGG | - | chr8_1:72107192-72107211 | None:intergenic | 35.0% | |
AATGGCTCCGAATTCCAAAA+TGG | - | chr8_1:72104304-72104323 | None:intergenic | 40.0% | |
CTTCCTTGGACAAACAAGAA+TGG | - | chr8_1:72104322-72104341 | None:intergenic | 40.0% | |
TGTTTGTCCAAGGAAGTTGA+CGG | + | chr8_1:72104326-72104345 | Msa1212260:CDS | 40.0% | |
GCTTCGAAACTACTCAACTT+TGG | + | chr8_1:72104350-72104369 | Msa1212260:CDS | 40.0% | |
TTCACTCATCACTCCGTTAT+CGG | + | chr8_1:72104389-72104408 | Msa1212260:CDS | 40.0% | |
TGAGCAATATCAGCAAAGGT+AGG | - | chr8_1:72104456-72104475 | None:intergenic | 40.0% | |
TGTAATCACATGTCAGACGT+TGG | - | chr8_1:72104589-72104608 | None:intergenic | 40.0% | |
!! | AATGGTGGTGAATTTTGTGC+AGG | + | chr8_1:72104698-72104717 | Msa1212260:intron | 40.0% |
!! | ATGGTGGTGAATTTTGTGCA+GGG | + | chr8_1:72104699-72104718 | Msa1212260:intron | 40.0% |
! | AATTTTGTGCAGGGAGGATT+TGG | + | chr8_1:72104708-72104727 | Msa1212260:intron | 40.0% |
! | ATTTTGTGCAGGGAGGATTT+GGG | + | chr8_1:72104709-72104728 | Msa1212260:intron | 40.0% |
AAAGAGTCGATCAAACCCTT+AGG | - | chr8_1:72104812-72104831 | None:intergenic | 40.0% | |
! | TAAGGGTTTGATCGACTCTT+TGG | + | chr8_1:72104811-72104830 | Msa1212260:CDS | 40.0% |
CAAAAGTTTGGAAGAAGAGC+TGG | + | chr8_1:72104845-72104864 | Msa1212260:CDS | 40.0% | |
AAGAAGAGCTGGTAACATGA+AGG | + | chr8_1:72104856-72104875 | Msa1212260:CDS | 40.0% | |
! | TCATTGGTGACCATTGGATT+CGG | + | chr8_1:72105167-72105186 | Msa1212260:intron | 40.0% |
ACTATCTGATCCGAATCCAA+TGG | - | chr8_1:72105180-72105199 | None:intergenic | 40.0% | |
CCATCTGATCCTTGATTCAA+CGG | + | chr8_1:72105259-72105278 | Msa1212260:intron | 40.0% | |
GTACTGAATGCTTGAATTCC+GGG | + | chr8_1:72105290-72105309 | Msa1212260:intron | 40.0% | |
AAGGGATAAATTTGGACACC+CGG | - | chr8_1:72105311-72105330 | None:intergenic | 40.0% | |
ATTCAAGGGAACGTTTGGAA+GGG | - | chr8_1:72105329-72105348 | None:intergenic | 40.0% | |
TTTGCATTCAAGGGAACGTT+TGG | - | chr8_1:72105334-72105353 | None:intergenic | 40.0% | |
! | GCTACTCTTGCTACCTATTT+TGG | + | chr8_1:72105447-72105466 | Msa1212260:CDS | 40.0% |
!!! | CTTGCTACCTATTTTGGTCT+TGG | + | chr8_1:72105453-72105472 | Msa1212260:CDS | 40.0% |
AGCAAACACACAGGTAATTG+TGG | + | chr8_1:72105478-72105497 | Msa1212260:intron | 40.0% | |
! | AGCAGATGACTAGAAAGCAT+GGG | - | chr8_1:72105519-72105538 | None:intergenic | 40.0% |
TAGCAGATGACTAGAAAGCA+TGG | - | chr8_1:72105520-72105539 | None:intergenic | 40.0% | |
TCAGGAGCTTAGATGATGTT+CGG | + | chr8_1:72105577-72105596 | Msa1212260:intron | 40.0% | |
GAACTGTTGCACAGTATTTG+AGG | - | chr8_1:72105617-72105636 | None:intergenic | 40.0% | |
CTGTGCAACAGTTCTATTCT+TGG | + | chr8_1:72105623-72105642 | Msa1212260:CDS | 40.0% | |
TGTTCTACCAAACAAGCATC+AGG | - | chr8_1:72105814-72105833 | None:intergenic | 40.0% | |
CGACTTCTTGTAACAGCATT+TGG | - | chr8_1:72106068-72106087 | None:intergenic | 40.0% | |
GTTACAAGAAGTCGCAGTAA+CGG | + | chr8_1:72106074-72106093 | Msa1212260:CDS | 40.0% | |
TTACAAGAAGTCGCAGTAAC+GGG | + | chr8_1:72106075-72106094 | Msa1212260:CDS | 40.0% | |
CTTGTTGCAAGAGAAAGGAT+TGG | - | chr8_1:72106167-72106186 | None:intergenic | 40.0% | |
CCAGAACAATGAAGCTGAAA+TGG | - | chr8_1:72106467-72106486 | None:intergenic | 40.0% | |
CCATTTCAGCTTCATTGTTC+TGG | + | chr8_1:72106464-72106483 | Msa1212260:CDS | 40.0% | |
TCAACCACAAAGTTTAACCG+TGG | - | chr8_1:72106542-72106561 | None:intergenic | 40.0% | |
TTATCCTCAGAATCTGGTAG+CGG | + | chr8_1:72106617-72106636 | Msa1212260:CDS | 40.0% | |
! | ATTGGAGGCCAGTTGTTATT+AGG | + | chr8_1:72106645-72106664 | Msa1212260:CDS | 40.0% |
ATCTCTTCACATACTGCTGT+AGG | - | chr8_1:72106808-72106827 | None:intergenic | 40.0% | |
TTGATTCCTTGTTCAAGCCT+GGG | + | chr8_1:72106914-72106933 | Msa1212260:CDS | 40.0% | |
GACCATTCATTGCAACTAGA+AGG | + | chr8_1:72107017-72107036 | Msa1212260:exon | 40.0% | |
AAAATGGCAAAACCCTGACC+GGG | - | chr8_1:72104288-72104307 | None:intergenic | 45.0% | |
CAAAATGGCAAAACCCTGAC+CGG | - | chr8_1:72104289-72104308 | None:intergenic | 45.0% | |
! | GAGCCATTCTTGTTTGTCCA+AGG | + | chr8_1:72104316-72104335 | Msa1212260:CDS | 45.0% |
GTGATGAGTGAAAGTTCGGA+GGG | - | chr8_1:72104381-72104400 | None:intergenic | 45.0% | |
AGTGATGAGTGAAAGTTCGG+AGG | - | chr8_1:72104382-72104401 | None:intergenic | 45.0% | |
CGGAGTGATGAGTGAAAGTT+CGG | - | chr8_1:72104385-72104404 | None:intergenic | 45.0% | |
CCGTTACATCGTTCCGATAA+CGG | - | chr8_1:72104405-72104424 | None:intergenic | 45.0% | |
CCGTTATCGGAACGATGTAA+CGG | + | chr8_1:72104402-72104421 | Msa1212260:CDS | 45.0% | |
ACCGTGAAGAAGGTCATAGA+CGG | - | chr8_1:72104481-72104500 | None:intergenic | 45.0% | |
TATGAAGCGAACCGTGAAGA+AGG | - | chr8_1:72104491-72104510 | None:intergenic | 45.0% | |
TGTAGCGTAGCACCTTCTAA+TGG | + | chr8_1:72104560-72104579 | Msa1212260:intron | 45.0% | |
!! | AGACGTTGGCTTCCATTAGA+AGG | - | chr8_1:72104575-72104594 | None:intergenic | 45.0% |
ATCAAACCCTTAGGTTCAGG+CGG | - | chr8_1:72104803-72104822 | None:intergenic | 45.0% | |
TCGATCAAACCCTTAGGTTC+AGG | - | chr8_1:72104806-72104825 | None:intergenic | 45.0% | |
GATCAGATGGTCCAGATTTC+AGG | - | chr8_1:72105249-72105268 | None:intergenic | 45.0% | |
CCGTTGAATCAAGGATCAGA+TGG | - | chr8_1:72105262-72105281 | None:intergenic | 45.0% | |
CATCAGTGACCGTTGAATCA+AGG | - | chr8_1:72105271-72105290 | None:intergenic | 45.0% | |
CATTCAAGGGAACGTTTGGA+AGG | - | chr8_1:72105330-72105349 | None:intergenic | 45.0% | |
TTGCTGCCCAAGACCAAAAT+AGG | - | chr8_1:72105463-72105482 | None:intergenic | 45.0% | |
TGGCACTAGTTGAGAACCTA+TGG | + | chr8_1:72105965-72105984 | Msa1212260:intron | 45.0% | |
AATACCAACAAACCCCCTTC+TGG | - | chr8_1:72106110-72106129 | None:intergenic | 45.0% | |
! | TGCTGCTTGTTGCAAGAGAA+AGG | - | chr8_1:72106172-72106191 | None:intergenic | 45.0% |
TTGAAGCTCACGGAAGCTAA+AGG | - | chr8_1:72106225-72106244 | None:intergenic | 45.0% | |
CATGGCTACATCTGTCCTAA+CGG | - | chr8_1:72106267-72106286 | None:intergenic | 45.0% | |
! | TCTGGTTTGAAAGTGCGGTT+TGG | + | chr8_1:72106482-72106501 | Msa1212260:CDS | 45.0% |
!! | AGTTTGTTGATAGTGCTGGC+CGG | + | chr8_1:72106516-72106535 | Msa1212260:CDS | 45.0% |
CGCAAGTTATCCTCAGAATC+TGG | + | chr8_1:72106611-72106630 | Msa1212260:CDS | 45.0% | |
CTTGATTCCTTGTTCAAGCC+TGG | + | chr8_1:72106913-72106932 | Msa1212260:CDS | 45.0% | |
AAAAGTCCCAGGCTTGAACA+AGG | - | chr8_1:72106923-72106942 | None:intergenic | 45.0% | |
ACTGCATCAACAAAAGTCCC+AGG | - | chr8_1:72106934-72106953 | None:intergenic | 45.0% | |
CTATCAATTCTGATGGCACG+AGG | - | chr8_1:72107078-72107097 | None:intergenic | 45.0% | |
TCTGATCGATCATCGCTGAG+AGG | - | chr8_1:72104225-72104244 | None:intergenic | 50.0% | |
!! | CGGTCAGGGTTTTGCCATTT+TGG | + | chr8_1:72104287-72104306 | Msa1212260:CDS | 50.0% |
TGAGTGAAAGTTCGGAGGGT+CGG | - | chr8_1:72104377-72104396 | None:intergenic | 50.0% | |
! | ATCAGCAAAGGTAGGAGCGT+TGG | - | chr8_1:72104448-72104467 | None:intergenic | 50.0% |
GGCGTGAGCAATATCAGCAA+AGG | - | chr8_1:72104460-72104479 | None:intergenic | 50.0% | |
GCCGTCTATGACCTTCTTCA+CGG | + | chr8_1:72104477-72104496 | Msa1212260:CDS | 50.0% | |
! | GTGGTGAATTTTGTGCAGGG+AGG | + | chr8_1:72104702-72104721 | Msa1212260:intron | 50.0% |
GATGGTCCAGATTTCAGGCT+TGG | - | chr8_1:72105244-72105263 | None:intergenic | 50.0% | |
! | GTCGCAGTAACGGGAAATCA+CGG | + | chr8_1:72106084-72106103 | Msa1212260:CDS | 50.0% |
CGTTAGGACAGATGTAGCCA+TGG | + | chr8_1:72106265-72106284 | Msa1212260:CDS | 50.0% | |
AGCCTCATCTTCTGTGCATC+AGG | + | chr8_1:72106322-72106341 | Msa1212260:CDS | 50.0% | |
TCATCTTCTGTGCATCAGGC+CGG | + | chr8_1:72106326-72106345 | Msa1212260:CDS | 50.0% | |
AACAGCAATAGAGCTGCTGC+CGG | - | chr8_1:72106348-72106367 | None:intergenic | 50.0% | |
CCACAAAGTTTAACCGTGGC+CGG | - | chr8_1:72106538-72106557 | None:intergenic | 50.0% | |
!! | AATCTGGTAGCGGCTCTGAT+TGG | + | chr8_1:72106627-72106646 | Msa1212260:CDS | 50.0% |
GTGTGTGCGTGCATGTGTAT+AGG | - | chr8_1:72106721-72106740 | None:intergenic | 50.0% | |
CGAAGCTCCGTCAACTTCCT+TGG | - | chr8_1:72104336-72104355 | None:intergenic | 55.0% | |
TTGTGCAGGGAGGATTTGGG+CGG | + | chr8_1:72104712-72104731 | Msa1212260:intron | 55.0% | |
AAACCCTTAGGTTCAGGCGG+TGG | - | chr8_1:72104800-72104819 | None:intergenic | 55.0% | |
GTCTTGGGCAGCAAACACAC+AGG | + | chr8_1:72105469-72105488 | Msa1212260:CDS | 55.0% | |
AACGGGAAATCACGGCCAGA+AGG | + | chr8_1:72106092-72106111 | Msa1212260:CDS | 55.0% | |
ACGGGAAATCACGGCCAGAA+GGG | + | chr8_1:72106093-72106112 | Msa1212260:CDS | 55.0% | |
GAAGATGAGGCTGCTGAACC+AGG | - | chr8_1:72106314-72106333 | None:intergenic | 55.0% | |
GGCCTGATGCACAGAAGATG+AGG | - | chr8_1:72106327-72106346 | None:intergenic | 55.0% | |
CCGGCCACGGTTAAACTTTG+TGG | + | chr8_1:72106535-72106554 | Msa1212260:CDS | 55.0% | |
AGAGCCGCTACCAGATTCTG+AGG | - | chr8_1:72106624-72106643 | None:intergenic | 55.0% | |
TGGCAAAACCCTGACCGGGT+CGG | - | chr8_1:72104284-72104303 | None:intergenic | 60.0% | |
TGTGCAGGGAGGATTTGGGC+GGG | + | chr8_1:72104713-72104732 | Msa1212260:intron | 60.0% | |
ACAGCCACCGCCTGAACCTA+AGG | + | chr8_1:72104793-72104812 | Msa1212260:CDS | 60.0% | |
CAGCCACCGCCTGAACCTAA+GGG | + | chr8_1:72104794-72104813 | Msa1212260:CDS | 60.0% | |
CGGGAAATCACGGCCAGAAG+GGG | + | chr8_1:72106094-72106113 | Msa1212260:CDS | 60.0% | |
GGGAAATCACGGCCAGAAGG+GGG | + | chr8_1:72106095-72106114 | Msa1212260:CDS | 60.0% | |
ACGGCCAGAAGGGGGTTTGT+TGG | + | chr8_1:72106103-72106122 | Msa1212260:CDS | 60.0% | |
!! | TTGATAGTGCTGGCCGGCCA+CGG | + | chr8_1:72106522-72106541 | Msa1212260:CDS | 60.0% |
!! | CTGGTAGCGGCTCTGATTGG+AGG | + | chr8_1:72106630-72106649 | Msa1212260:CDS | 60.0% |
AAACCCTGACCGGGTCGGGT+CGG | - | chr8_1:72104279-72104298 | None:intergenic | 65.0% | |
GGCAAAACCCTGACCGGGTC+GGG | - | chr8_1:72104283-72104302 | None:intergenic | 65.0% | |
ACCACCGTTCCGACCCGACC+CGG | + | chr8_1:72104267-72104286 | Msa1212260:CDS | 70.0% | |
CTGACCGGGTCGGGTCGGAA+CGG | - | chr8_1:72104274-72104293 | None:intergenic | 70.0% | |
GTTCCGACCCGACCCGGTCA+GGG | + | chr8_1:72104273-72104292 | Msa1212260:CDS | 70.0% | |
ACCGGGTCGGGTCGGAACGG+TGG | - | chr8_1:72104271-72104290 | None:intergenic | 75.0% | |
CGTTCCGACCCGACCCGGTC+AGG | + | chr8_1:72104272-72104291 | Msa1212260:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 72104065 | 72107218 | 72104065 | ID=Msa1212260;Name=Msa1212260 |
chr8_1 | mRNA | 72104065 | 72107218 | 72104065 | ID=Msa1212260-mRNA-1;Parent=Msa1212260;Name=Msa1212260-mRNA-1;_AED=0.12;_eAED=0.12;_QI=145|1|1|1|1|1|6|183|492 |
chr8_1 | exon | 72104065 | 72104498 | 72104065 | ID=Msa1212260-mRNA-1:exon:24303;Parent=Msa1212260-mRNA-1 |
chr8_1 | exon | 72104720 | 72104877 | 72104720 | ID=Msa1212260-mRNA-1:exon:24304;Parent=Msa1212260-mRNA-1 |
chr8_1 | exon | 72105444 | 72105490 | 72105444 | ID=Msa1212260-mRNA-1:exon:24305;Parent=Msa1212260-mRNA-1 |
chr8_1 | exon | 72105581 | 72105644 | 72105581 | ID=Msa1212260-mRNA-1:exon:24306;Parent=Msa1212260-mRNA-1 |
chr8_1 | exon | 72106020 | 72106705 | 72106020 | ID=Msa1212260-mRNA-1:exon:24307;Parent=Msa1212260-mRNA-1 |
chr8_1 | exon | 72106801 | 72107218 | 72106801 | ID=Msa1212260-mRNA-1:exon:24308;Parent=Msa1212260-mRNA-1 |
chr8_1 | five_prime_UTR | 72104065 | 72104209 | 72104065 | ID=Msa1212260-mRNA-1:five_prime_utr;Parent=Msa1212260-mRNA-1 |
chr8_1 | CDS | 72104210 | 72104498 | 72104210 | ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1 |
chr8_1 | CDS | 72104720 | 72104877 | 72104720 | ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1 |
chr8_1 | CDS | 72105444 | 72105490 | 72105444 | ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1 |
chr8_1 | CDS | 72105581 | 72105644 | 72105581 | ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1 |
chr8_1 | CDS | 72106020 | 72106705 | 72106020 | ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1 |
chr8_1 | CDS | 72106801 | 72107035 | 72106801 | ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1 |
chr8_1 | three_prime_UTR | 72107036 | 72107218 | 72107036 | ID=Msa1212260-mRNA-1:three_prime_utr;Parent=Msa1212260-mRNA-1 |
Gene Sequence |
Protein sequence |