AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1212260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212260 MtrunA17_Chr4g0061011 96.951 492 15 0 1 492 1 492 0.0 989
Msa1212260 MtrunA17_Chr8g0382661 62.621 206 74 1 12 214 16 221 7.61e-88 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212260 AT5G61390.1 56.914 499 191 7 1 490 4 487 0.0 535
Msa1212260 AT5G07710.1 55.967 486 189 7 8 490 4 467 1.55e-179 512
Msa1212260 AT1G74390.1 53.815 498 211 4 8 489 8 502 6.49e-173 496
Msa1212260 AT1G74390.2 53.815 498 211 4 8 489 8 502 6.49e-173 496
Msa1212260 AT1G74390.3 47.765 358 168 4 148 489 1 355 1.59e-95 293
Msa1212260 AT1G74390.4 47.472 356 168 4 150 489 1 353 9.80e-94 289
Msa1212260 AT4G39810.1 62.687 201 75 0 11 211 8 208 1.07e-85 265

Find 121 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTCTTGCTACCTATTT+TGG 0.169699 8_1:+72105447 Msa1212260:CDS
ATATATTTCTGTTGCGTAAA+TGG 0.185111 8_1:-72106830 None:intergenic
TTATCTTGAGTTTCAGTTTC+AGG 0.200693 8_1:-72106134 None:intergenic
CCATTTCAGCTTCATTGTTC+TGG 0.219236 8_1:+72106464 Msa1212260:CDS
ATTGGAGGCCAGTTGTTATT+AGG 0.257879 8_1:+72106645 Msa1212260:CDS
TCTCTTGTTCCATCTTATTA+TGG 0.268745 8_1:+72106407 Msa1212260:CDS
TTCACTCATCACTCCGTTAT+CGG 0.283917 8_1:+72104389 Msa1212260:CDS
GCAATGAATGGTCAATTTCT+TGG 0.292445 8_1:-72107007 None:intergenic
CTGTGCAACAGTTCTATTCT+TGG 0.303572 8_1:+72105623 Msa1212260:CDS
GTTTATCCTTGTAATCTATA+TGG 0.307589 8_1:-72107203 None:intergenic
CCAGAACAATGAAGCTGAAA+TGG 0.309859 8_1:-72106464 None:intergenic
TCAGAATGCAGGGATTAAAT+TGG 0.313072 8_1:+72106981 Msa1212260:CDS
TAAGGGTTTGATCGACTCTT+TGG 0.322291 8_1:+72104811 Msa1212260:CDS
CGACTTCTTGTAACAGCATT+TGG 0.324821 8_1:-72106065 None:intergenic
ACAAGAATTCAGAAATGTTC+TGG 0.353071 8_1:-72104166 None:intergenic
CGAAGCTCCGTCAACTTCCT+TGG 0.356669 8_1:-72104333 None:intergenic
CCGGCCACGGTTAAACTTTG+TGG 0.358516 8_1:+72106535 Msa1212260:CDS
GACCATTCATTGCAACTAGA+AGG 0.364238 8_1:+72107017 Msa1212260:exon
CTTGATTCCTTGTTCAAGCC+TGG 0.376675 8_1:+72106913 Msa1212260:CDS
TTGCTGCCCAAGACCAAAAT+AGG 0.381690 8_1:-72105460 None:intergenic
CGTTCCGACCCGACCCGGTC+AGG 0.385412 8_1:+72104272 Msa1212260:CDS
GGCAAAACCCTGACCGGGTC+GGG 0.387039 8_1:-72104280 None:intergenic
CCGTTACATCGTTCCGATAA+CGG 0.394839 8_1:-72104402 None:intergenic
AATGGCTCCGAATTCCAAAA+TGG 0.397194 8_1:-72104301 None:intergenic
CGCAAGTTATCCTCAGAATC+TGG 0.402038 8_1:+72106611 Msa1212260:CDS
TATATTCACTGAAAATTGTT+GGG 0.410842 8_1:+72106037 Msa1212260:CDS
TTCCTTCTAGTTGCAATGAA+TGG 0.413016 8_1:-72107019 None:intergenic
CCAGTTGTTATTAGGAAAGA+AGG 0.415626 8_1:+72106653 Msa1212260:CDS
GAACTGTTGCACAGTATTTG+AGG 0.416121 8_1:-72105614 None:intergenic
AGCCTCATCTTCTGTGCATC+AGG 0.420868 8_1:+72106322 Msa1212260:CDS
TTCAGAAATGTTCTGGTACT+AGG 0.425729 8_1:-72104159 None:intergenic
CCTTCTTTCCTAATAACAAC+TGG 0.442874 8_1:-72106653 None:intergenic
TTACAAGAAGTCGCAGTAAC+GGG 0.449771 8_1:+72106075 Msa1212260:CDS
CGGAGTGATGAGTGAAAGTT+CGG 0.453505 8_1:-72104382 None:intergenic
ATATATTCACTGAAAATTGT+TGG 0.453559 8_1:+72106036 Msa1212260:CDS
TCGATCAAACCCTTAGGTTC+AGG 0.456957 8_1:-72104803 None:intergenic
ACTTACTGCAATCTGATAGT+AGG 0.458699 8_1:-72106689 None:intergenic
TGCTGCTTGTTGCAAGAGAA+AGG 0.461836 8_1:-72106169 None:intergenic
AGATTGAAGCGTAGATTAGA+TGG 0.462446 8_1:+72107046 Msa1212260:three_prime_UTR
GCCGTCTATGACCTTCTTCA+CGG 0.464019 8_1:+72104477 Msa1212260:CDS
CAAAATGGCAAAACCCTGAC+CGG 0.464089 8_1:-72104286 None:intergenic
TCAGGAGCTTAGATGATGTT+CGG 0.464792 8_1:+72105577 Msa1212260:intron
TCTATATGGAGTTGAGCATA+TGG 0.464933 8_1:-72107189 None:intergenic
ACAGCCACCGCCTGAACCTA+AGG 0.465007 8_1:+72104793 Msa1212260:CDS
TTGATAGTGCTGGCCGGCCA+CGG 0.465393 8_1:+72106522 Msa1212260:CDS
AATCTGGTAGCGGCTCTGAT+TGG 0.473924 8_1:+72106627 Msa1212260:CDS
TACTAGGAAATAAATGTACT+TGG 0.479518 8_1:-72104143 None:intergenic
ACAAAGTTTGTTGATAGTGC+TGG 0.479560 8_1:+72106512 Msa1212260:CDS
TCTGGTTTGAAAGTGCGGTT+TGG 0.485291 8_1:+72106482 Msa1212260:CDS
CAGAACAATGAAGCTGAAAT+GGG 0.488231 8_1:-72106463 None:intergenic
TATGACTATCATCAGAATGC+AGG 0.494678 8_1:+72106970 Msa1212260:CDS
CAAAAGTTTGGAAGAAGAGC+TGG 0.497150 8_1:+72104845 Msa1212260:CDS
TTGATTCCTTGTTCAAGCCT+GGG 0.497172 8_1:+72106914 Msa1212260:CDS
GAAATAAATGTACTTGGCTA+AGG 0.499314 8_1:-72104137 None:intergenic
GCTTCGAAACTACTCAACTT+TGG 0.501482 8_1:+72104350 Msa1212260:CDS
TTGAAGCTCACGGAAGCTAA+AGG 0.502180 8_1:-72106222 None:intergenic
ATCAGCAAAGGTAGGAGCGT+TGG 0.504280 8_1:-72104445 None:intergenic
GAAGATGAGGCTGCTGAACC+AGG 0.514934 8_1:-72106311 None:intergenic
AGGATAGAATTACATCATGA+AGG 0.518374 8_1:+72106437 Msa1212260:CDS
CTTTGACTGCCATAATAAGA+TGG 0.520227 8_1:-72106416 None:intergenic
CTGGTAGCGGCTCTGATTGG+AGG 0.524236 8_1:+72106630 Msa1212260:CDS
GTTCCGACCCGACCCGGTCA+GGG 0.524671 8_1:+72104273 Msa1212260:CDS
AATCATCTGGATTTGTGCAA+AGG 0.525281 8_1:+72106860 Msa1212260:CDS
CATCTTATTATGGCAGTCAA+AGG 0.535720 8_1:+72106417 Msa1212260:CDS
CCACAAAGTTTAACCGTGGC+CGG 0.539578 8_1:-72106535 None:intergenic
CTTCCTTGGACAAACAAGAA+TGG 0.541331 8_1:-72104319 None:intergenic
AAAGAGTCGATCAAACCCTT+AGG 0.543678 8_1:-72104809 None:intergenic
CGGGAAATCACGGCCAGAAG+GGG 0.544051 8_1:+72106094 Msa1212260:CDS
AACGGGAAATCACGGCCAGA+AGG 0.548226 8_1:+72106092 Msa1212260:CDS
GAGCCATTCTTGTTTGTCCA+AGG 0.549208 8_1:+72104316 Msa1212260:CDS
TCAAGAACATTACATAAACT+TGG 0.549671 8_1:-72106569 None:intergenic
TATGAAGCGAACCGTGAAGA+AGG 0.552205 8_1:-72104488 None:intergenic
ATTGTTCTGGTTTGAAAGTG+CGG 0.557422 8_1:+72106477 Msa1212260:CDS
TGTTTGTCCAAGGAAGTTGA+CGG 0.563235 8_1:+72104326 Msa1212260:CDS
CTGACCGGGTCGGGTCGGAA+CGG 0.564383 8_1:-72104271 None:intergenic
AAATTAATAGAGAATCCGTT+AGG 0.565242 8_1:+72106249 Msa1212260:CDS
AATCTTTGCAAGAGAAACAA+TGG 0.568170 8_1:-72107103 None:intergenic
GTTACAAGAAGTCGCAGTAA+CGG 0.569792 8_1:+72106074 Msa1212260:CDS
ACGGGAAATCACGGCCAGAA+GGG 0.570522 8_1:+72106093 Msa1212260:CDS
CTTGTTGCAAGAGAAAGGAT+TGG 0.571982 8_1:-72106164 None:intergenic
GTCGCAGTAACGGGAAATCA+CGG 0.575047 8_1:+72106084 Msa1212260:CDS
CATGGCTACATCTGTCCTAA+CGG 0.575326 8_1:-72106264 None:intergenic
GGTTAATCTATCAATTCTGA+TGG 0.576569 8_1:-72107082 None:intergenic
TCATCTTCTGTGCATCAGGC+CGG 0.578173 8_1:+72106326 Msa1212260:CDS
TTGTGCAGGGAGGATTTGGG+CGG 0.582583 8_1:+72104712 Msa1212260:intron
AAACCCTTAGGTTCAGGCGG+TGG 0.584405 8_1:-72104797 None:intergenic
ACCGGGTCGGGTCGGAACGG+TGG 0.585225 8_1:-72104268 None:intergenic
ACATTACATAAACTTGGTGA+TGG 0.585353 8_1:-72106563 None:intergenic
TCAACTCCATATAGATTACA+AGG 0.590237 8_1:+72107197 Msa1212260:three_prime_UTR
TGAGTGAAAGTTCGGAGGGT+CGG 0.593095 8_1:-72104374 None:intergenic
TGGCAAAACCCTGACCGGGT+CGG 0.593613 8_1:-72104281 None:intergenic
ATCTCTTCACATACTGCTGT+AGG 0.599633 8_1:-72106805 None:intergenic
ATGACTATCATCAGAATGCA+GGG 0.600817 8_1:+72106971 Msa1212260:CDS
TTATCCTCAGAATCTGGTAG+CGG 0.601161 8_1:+72106617 Msa1212260:CDS
TGAACCAGGTGAATATTGTA+TGG 0.606211 8_1:-72106297 None:intergenic
ACTGCATCAACAAAAGTCCC+AGG 0.606468 8_1:-72106931 None:intergenic
AAACCCTGACCGGGTCGGGT+CGG 0.607699 8_1:-72104276 None:intergenic
AAGAAGAGCTGGTAACATGA+AGG 0.607820 8_1:+72104856 Msa1212260:CDS
AAAAGTCCCAGGCTTGAACA+AGG 0.615128 8_1:-72106920 None:intergenic
GTGATGAGTGAAAGTTCGGA+GGG 0.615353 8_1:-72104378 None:intergenic
CGTTAGGACAGATGTAGCCA+TGG 0.617479 8_1:+72106265 Msa1212260:CDS
AACAGCAATAGAGCTGCTGC+CGG 0.617637 8_1:-72106345 None:intergenic
GGGAAATCACGGCCAGAAGG+GGG 0.629891 8_1:+72106095 Msa1212260:CDS
AGAGCCGCTACCAGATTCTG+AGG 0.631582 8_1:-72106621 None:intergenic
TGTGCAGGGAGGATTTGGGC+GGG 0.632991 8_1:+72104713 Msa1212260:intron
CAGCCACCGCCTGAACCTAA+GGG 0.635006 8_1:+72104794 Msa1212260:CDS
CCGTTATCGGAACGATGTAA+CGG 0.636088 8_1:+72104402 Msa1212260:CDS
GGCGTGAGCAATATCAGCAA+AGG 0.636460 8_1:-72104457 None:intergenic
GGCCTGATGCACAGAAGATG+AGG 0.637574 8_1:-72106324 None:intergenic
AAAATGGCAAAACCCTGACC+GGG 0.637699 8_1:-72104285 None:intergenic
AGTTTGTTGATAGTGCTGGC+CGG 0.638222 8_1:+72106516 Msa1212260:CDS
TGAGCAATATCAGCAAAGGT+AGG 0.643892 8_1:-72104453 None:intergenic
CTATCAATTCTGATGGCACG+AGG 0.647718 8_1:-72107075 None:intergenic
ATCAAACCCTTAGGTTCAGG+CGG 0.649042 8_1:-72104800 None:intergenic
AAATCCATACAATATTCACC+TGG 0.654350 8_1:+72106293 Msa1212260:CDS
AGTGATGAGTGAAAGTTCGG+AGG 0.655173 8_1:-72104379 None:intergenic
GTCTTGGGCAGCAAACACAC+AGG 0.668051 8_1:+72105469 Msa1212260:CDS
ACCGTGAAGAAGGTCATAGA+CGG 0.669934 8_1:-72104478 None:intergenic
TTTATTCATTTGTTTAAACG+CGG 0.683638 8_1:-72104066 None:intergenic
TCTGATCGATCATCGCTGAG+AGG 0.700110 8_1:-72104222 None:intergenic
TCAACCACAAAGTTTAACCG+TGG 0.732512 8_1:-72106539 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTCTTTTAAATGTT+AGG + chr8_1:72104532-72104551 Msa1212260:intron 15.0%
!!! ATCTTTTCTTTTAAATGTTA+GGG + chr8_1:72104533-72104552 Msa1212260:intron 15.0%
!!! CTCTTTAAAATTAATTAGAA+TGG - chr8_1:72105760-72105779 None:intergenic 15.0%
!! TTTATTCATTTGTTTAAACG+CGG - chr8_1:72104069-72104088 None:intergenic 20.0%
!! TATATGCTTATTACATTCAT+AGG + chr8_1:72104905-72104924 Msa1212260:intron 20.0%
!! ATATGCTTATTACATTCATA+GGG + chr8_1:72104906-72104925 Msa1212260:intron 20.0%
!! TATCATAAGCAAAAAGAAAA+TGG - chr8_1:72105546-72105565 None:intergenic 20.0%
!!! TTTTAAAGAGAAAAAAAGTG+TGG + chr8_1:72105770-72105789 Msa1212260:intron 20.0%
!! ATATATTCACTGAAAATTGT+TGG + chr8_1:72106036-72106055 Msa1212260:CDS 20.0%
!! TATATTCACTGAAAATTGTT+GGG + chr8_1:72106037-72106056 Msa1212260:CDS 20.0%
!!! AGAAGACATTGATATTTTTT+CGG - chr8_1:72106378-72106397 None:intergenic 20.0%
!! ATATATCAAAAAGAATCATC+TGG + chr8_1:72106847-72106866 Msa1212260:CDS 20.0%
!!! GTTCACATTTATAAATTTTC+TGG + chr8_1:72107153-72107172 Msa1212260:three_prime_UTR 20.0%
! TACTAGGAAATAAATGTACT+TGG - chr8_1:72104146-72104165 None:intergenic 25.0%
! TGCTTTCAATTTCGAAAAAT+GGG + chr8_1:72104192-72104211 Msa1212260:exon 25.0%
! TTGCAAATTATTACATTTGC+AGG + chr8_1:72104625-72104644 Msa1212260:intron 25.0%
! AATGCTTTGTAGGTTAATTA+GGG + chr8_1:72104673-72104692 Msa1212260:intron 25.0%
! ATGAATCATTTCTACAACAA+TGG - chr8_1:72105693-72105712 None:intergenic 25.0%
! TAGAATACTAAATATCTGGA+AGG - chr8_1:72105945-72105964 None:intergenic 25.0%
! TCCAGATATTTAGTATTCTA+TGG + chr8_1:72105945-72105964 Msa1212260:intron 25.0%
!! ATTATCATCATTTTCACCAT+AGG - chr8_1:72105984-72106003 None:intergenic 25.0%
!! CAATTTTCAGTGAATATATC+TGG - chr8_1:72106035-72106054 None:intergenic 25.0%
! AAATTAATAGAGAATCCGTT+AGG + chr8_1:72106249-72106268 Msa1212260:CDS 25.0%
!!! GAAGACATTGATATTTTTTC+GGG - chr8_1:72106377-72106396 None:intergenic 25.0%
! TCAAGAACATTACATAAACT+TGG - chr8_1:72106572-72106591 None:intergenic 25.0%
!! ATATATTTCTGTTGCGTAAA+TGG - chr8_1:72106833-72106852 None:intergenic 25.0%
!!! ATAAATTTTCTGGTTACTCA+TGG + chr8_1:72107163-72107182 Msa1212260:three_prime_UTR 25.0%
GAAATAAATGTACTTGGCTA+AGG - chr8_1:72104140-72104159 None:intergenic 30.0%
ACAAGAATTCAGAAATGTTC+TGG - chr8_1:72104169-72104188 None:intergenic 30.0%
CTGCTTTCAATTTCGAAAAA+TGG + chr8_1:72104191-72104210 Msa1212260:exon 30.0%
! TATTACATTTGCAGGTTTTG+AGG + chr8_1:72104633-72104652 Msa1212260:intron 30.0%
CAATGCTTTGTAGGTTAATT+AGG + chr8_1:72104672-72104691 Msa1212260:intron 30.0%
TGTAGGTTAATTAGGGTTAA+TGG + chr8_1:72104680-72104699 Msa1212260:intron 30.0%
!!! GTTTTGTTGACTCAAAAGTT+TGG + chr8_1:72104833-72104852 Msa1212260:CDS 30.0%
AAAGTTATTCCAAACAGAAG+TGG + chr8_1:72105108-72105127 Msa1212260:intron 30.0%
! CAATTTTATCCACTTCTGTT+TGG - chr8_1:72105120-72105139 None:intergenic 30.0%
CAATCACGTAATCAATTCAT+TGG + chr8_1:72105151-72105170 Msa1212260:intron 30.0%
!!! ACTAGAGCATTACACTTTTT+TGG + chr8_1:72105353-72105372 Msa1212260:intron 30.0%
!!! CTAGAGCATTACACTTTTTT+GGG + chr8_1:72105354-72105373 Msa1212260:intron 30.0%
!!! TTACACTTTTTTGGGAATGA+AGG + chr8_1:72105362-72105381 Msa1212260:intron 30.0%
TATGATATAGTTGCATCTTC+AGG + chr8_1:72105559-72105578 Msa1212260:intron 30.0%
TTGTTTGCAAAGACTTAACA+AGG - chr8_1:72105662-72105681 None:intergenic 30.0%
GCCATAGAATACTAAATATC+TGG - chr8_1:72105949-72105968 None:intergenic 30.0%
GATAATATCTCTGTCTTTAC+AGG + chr8_1:72105998-72106017 Msa1212260:intron 30.0%
TTATCTTGAGTTTCAGTTTC+AGG - chr8_1:72106137-72106156 None:intergenic 30.0%
!!! TAATTTCGTTTTGAAGCTCA+CGG - chr8_1:72106235-72106254 None:intergenic 30.0%
! TTGTATGGATTTTTCATCCA+TGG - chr8_1:72106285-72106304 None:intergenic 30.0%
AAATCCATACAATATTCACC+TGG + chr8_1:72106293-72106312 Msa1212260:CDS 30.0%
TCTCTTGTTCCATCTTATTA+TGG + chr8_1:72106407-72106426 Msa1212260:CDS 30.0%
AGGATAGAATTACATCATGA+AGG + chr8_1:72106437-72106456 Msa1212260:CDS 30.0%
! ACATTACATAAACTTGGTGA+TGG - chr8_1:72106566-72106585 None:intergenic 30.0%
GGTTAATCTATCAATTCTGA+TGG - chr8_1:72107085-72107104 None:intergenic 30.0%
AATCTTTGCAAGAGAAACAA+TGG - chr8_1:72107106-72107125 None:intergenic 30.0%
TTCAGAAATGTTCTGGTACT+AGG - chr8_1:72104162-72104181 None:intergenic 35.0%
!!! GGTTTTGCCATTTTGGAATT+CGG + chr8_1:72104294-72104313 Msa1212260:CDS 35.0%
TGTCTTTGTCAATGCTTTGT+AGG + chr8_1:72104663-72104682 Msa1212260:intron 35.0%
AGGTTAATTAGGGTTAATGG+TGG + chr8_1:72104683-72104702 Msa1212260:intron 35.0%
GTAATCGAAGAGAAAATGAG+AGG + chr8_1:72105003-72105022 Msa1212260:intron 35.0%
GAATTGATTACGTGATTGCA+GGG - chr8_1:72105149-72105168 None:intergenic 35.0%
TGAATTGATTACGTGATTGC+AGG - chr8_1:72105150-72105169 None:intergenic 35.0%
! ATCAATTCATTGGTGACCAT+TGG + chr8_1:72105161-72105180 Msa1212260:intron 35.0%
TAAATACCAAGCCTGAAATC+TGG + chr8_1:72105235-72105254 Msa1212260:intron 35.0%
TGTACTGAATGCTTGAATTC+CGG + chr8_1:72105289-72105308 Msa1212260:intron 35.0%
ACGTTTGGAAGGGATAAATT+TGG - chr8_1:72105319-72105338 None:intergenic 35.0%
! ATGCTCTAGTTTGCATTCAA+GGG - chr8_1:72105343-72105362 None:intergenic 35.0%
! AATGCTCTAGTTTGCATTCA+AGG - chr8_1:72105344-72105363 None:intergenic 35.0%
TTTATGTTGTTCACTGCAGA+TGG + chr8_1:72105425-72105444 Msa1212260:intron 35.0%
!!! TTGCTACCTATTTTGGTCTT+GGG + chr8_1:72105454-72105473 Msa1212260:CDS 35.0%
TTCTAAACCTGATGCTTGTT+TGG + chr8_1:72105804-72105823 Msa1212260:intron 35.0%
TGAACCAGGTGAATATTGTA+TGG - chr8_1:72106300-72106319 None:intergenic 35.0%
CTTTGACTGCCATAATAAGA+TGG - chr8_1:72106419-72106438 None:intergenic 35.0%
CATCTTATTATGGCAGTCAA+AGG + chr8_1:72106417-72106436 Msa1212260:CDS 35.0%
CAGAACAATGAAGCTGAAAT+GGG - chr8_1:72106466-72106485 None:intergenic 35.0%
!! ATTGTTCTGGTTTGAAAGTG+CGG + chr8_1:72106477-72106496 Msa1212260:CDS 35.0%
!! ACAAAGTTTGTTGATAGTGC+TGG + chr8_1:72106512-72106531 Msa1212260:CDS 35.0%
CCTTCTTTCCTAATAACAAC+TGG - chr8_1:72106656-72106675 None:intergenic 35.0%
! CCAGTTGTTATTAGGAAAGA+AGG + chr8_1:72106653-72106672 Msa1212260:CDS 35.0%
ACTTACTGCAATCTGATAGT+AGG - chr8_1:72106692-72106711 None:intergenic 35.0%
AATCATCTGGATTTGTGCAA+AGG + chr8_1:72106860-72106879 Msa1212260:CDS 35.0%
TATGACTATCATCAGAATGC+AGG + chr8_1:72106970-72106989 Msa1212260:CDS 35.0%
ATGACTATCATCAGAATGCA+GGG + chr8_1:72106971-72106990 Msa1212260:CDS 35.0%
TCAGAATGCAGGGATTAAAT+TGG + chr8_1:72106981-72107000 Msa1212260:CDS 35.0%
GCAATGAATGGTCAATTTCT+TGG - chr8_1:72107010-72107029 None:intergenic 35.0%
! TTCCTTCTAGTTGCAATGAA+TGG - chr8_1:72107022-72107041 None:intergenic 35.0%
AGATTGAAGCGTAGATTAGA+TGG + chr8_1:72107046-72107065 Msa1212260:three_prime_UTR 35.0%
TCTATATGGAGTTGAGCATA+TGG - chr8_1:72107192-72107211 None:intergenic 35.0%
AATGGCTCCGAATTCCAAAA+TGG - chr8_1:72104304-72104323 None:intergenic 40.0%
CTTCCTTGGACAAACAAGAA+TGG - chr8_1:72104322-72104341 None:intergenic 40.0%
TGTTTGTCCAAGGAAGTTGA+CGG + chr8_1:72104326-72104345 Msa1212260:CDS 40.0%
GCTTCGAAACTACTCAACTT+TGG + chr8_1:72104350-72104369 Msa1212260:CDS 40.0%
TTCACTCATCACTCCGTTAT+CGG + chr8_1:72104389-72104408 Msa1212260:CDS 40.0%
TGAGCAATATCAGCAAAGGT+AGG - chr8_1:72104456-72104475 None:intergenic 40.0%
TGTAATCACATGTCAGACGT+TGG - chr8_1:72104589-72104608 None:intergenic 40.0%
!! AATGGTGGTGAATTTTGTGC+AGG + chr8_1:72104698-72104717 Msa1212260:intron 40.0%
!! ATGGTGGTGAATTTTGTGCA+GGG + chr8_1:72104699-72104718 Msa1212260:intron 40.0%
! AATTTTGTGCAGGGAGGATT+TGG + chr8_1:72104708-72104727 Msa1212260:intron 40.0%
! ATTTTGTGCAGGGAGGATTT+GGG + chr8_1:72104709-72104728 Msa1212260:intron 40.0%
AAAGAGTCGATCAAACCCTT+AGG - chr8_1:72104812-72104831 None:intergenic 40.0%
! TAAGGGTTTGATCGACTCTT+TGG + chr8_1:72104811-72104830 Msa1212260:CDS 40.0%
CAAAAGTTTGGAAGAAGAGC+TGG + chr8_1:72104845-72104864 Msa1212260:CDS 40.0%
AAGAAGAGCTGGTAACATGA+AGG + chr8_1:72104856-72104875 Msa1212260:CDS 40.0%
! TCATTGGTGACCATTGGATT+CGG + chr8_1:72105167-72105186 Msa1212260:intron 40.0%
ACTATCTGATCCGAATCCAA+TGG - chr8_1:72105180-72105199 None:intergenic 40.0%
CCATCTGATCCTTGATTCAA+CGG + chr8_1:72105259-72105278 Msa1212260:intron 40.0%
GTACTGAATGCTTGAATTCC+GGG + chr8_1:72105290-72105309 Msa1212260:intron 40.0%
AAGGGATAAATTTGGACACC+CGG - chr8_1:72105311-72105330 None:intergenic 40.0%
ATTCAAGGGAACGTTTGGAA+GGG - chr8_1:72105329-72105348 None:intergenic 40.0%
TTTGCATTCAAGGGAACGTT+TGG - chr8_1:72105334-72105353 None:intergenic 40.0%
! GCTACTCTTGCTACCTATTT+TGG + chr8_1:72105447-72105466 Msa1212260:CDS 40.0%
!!! CTTGCTACCTATTTTGGTCT+TGG + chr8_1:72105453-72105472 Msa1212260:CDS 40.0%
AGCAAACACACAGGTAATTG+TGG + chr8_1:72105478-72105497 Msa1212260:intron 40.0%
! AGCAGATGACTAGAAAGCAT+GGG - chr8_1:72105519-72105538 None:intergenic 40.0%
TAGCAGATGACTAGAAAGCA+TGG - chr8_1:72105520-72105539 None:intergenic 40.0%
TCAGGAGCTTAGATGATGTT+CGG + chr8_1:72105577-72105596 Msa1212260:intron 40.0%
GAACTGTTGCACAGTATTTG+AGG - chr8_1:72105617-72105636 None:intergenic 40.0%
CTGTGCAACAGTTCTATTCT+TGG + chr8_1:72105623-72105642 Msa1212260:CDS 40.0%
TGTTCTACCAAACAAGCATC+AGG - chr8_1:72105814-72105833 None:intergenic 40.0%
CGACTTCTTGTAACAGCATT+TGG - chr8_1:72106068-72106087 None:intergenic 40.0%
GTTACAAGAAGTCGCAGTAA+CGG + chr8_1:72106074-72106093 Msa1212260:CDS 40.0%
TTACAAGAAGTCGCAGTAAC+GGG + chr8_1:72106075-72106094 Msa1212260:CDS 40.0%
CTTGTTGCAAGAGAAAGGAT+TGG - chr8_1:72106167-72106186 None:intergenic 40.0%
CCAGAACAATGAAGCTGAAA+TGG - chr8_1:72106467-72106486 None:intergenic 40.0%
CCATTTCAGCTTCATTGTTC+TGG + chr8_1:72106464-72106483 Msa1212260:CDS 40.0%
TCAACCACAAAGTTTAACCG+TGG - chr8_1:72106542-72106561 None:intergenic 40.0%
TTATCCTCAGAATCTGGTAG+CGG + chr8_1:72106617-72106636 Msa1212260:CDS 40.0%
! ATTGGAGGCCAGTTGTTATT+AGG + chr8_1:72106645-72106664 Msa1212260:CDS 40.0%
ATCTCTTCACATACTGCTGT+AGG - chr8_1:72106808-72106827 None:intergenic 40.0%
TTGATTCCTTGTTCAAGCCT+GGG + chr8_1:72106914-72106933 Msa1212260:CDS 40.0%
GACCATTCATTGCAACTAGA+AGG + chr8_1:72107017-72107036 Msa1212260:exon 40.0%
AAAATGGCAAAACCCTGACC+GGG - chr8_1:72104288-72104307 None:intergenic 45.0%
CAAAATGGCAAAACCCTGAC+CGG - chr8_1:72104289-72104308 None:intergenic 45.0%
! GAGCCATTCTTGTTTGTCCA+AGG + chr8_1:72104316-72104335 Msa1212260:CDS 45.0%
GTGATGAGTGAAAGTTCGGA+GGG - chr8_1:72104381-72104400 None:intergenic 45.0%
AGTGATGAGTGAAAGTTCGG+AGG - chr8_1:72104382-72104401 None:intergenic 45.0%
CGGAGTGATGAGTGAAAGTT+CGG - chr8_1:72104385-72104404 None:intergenic 45.0%
CCGTTACATCGTTCCGATAA+CGG - chr8_1:72104405-72104424 None:intergenic 45.0%
CCGTTATCGGAACGATGTAA+CGG + chr8_1:72104402-72104421 Msa1212260:CDS 45.0%
ACCGTGAAGAAGGTCATAGA+CGG - chr8_1:72104481-72104500 None:intergenic 45.0%
TATGAAGCGAACCGTGAAGA+AGG - chr8_1:72104491-72104510 None:intergenic 45.0%
TGTAGCGTAGCACCTTCTAA+TGG + chr8_1:72104560-72104579 Msa1212260:intron 45.0%
!! AGACGTTGGCTTCCATTAGA+AGG - chr8_1:72104575-72104594 None:intergenic 45.0%
ATCAAACCCTTAGGTTCAGG+CGG - chr8_1:72104803-72104822 None:intergenic 45.0%
TCGATCAAACCCTTAGGTTC+AGG - chr8_1:72104806-72104825 None:intergenic 45.0%
GATCAGATGGTCCAGATTTC+AGG - chr8_1:72105249-72105268 None:intergenic 45.0%
CCGTTGAATCAAGGATCAGA+TGG - chr8_1:72105262-72105281 None:intergenic 45.0%
CATCAGTGACCGTTGAATCA+AGG - chr8_1:72105271-72105290 None:intergenic 45.0%
CATTCAAGGGAACGTTTGGA+AGG - chr8_1:72105330-72105349 None:intergenic 45.0%
TTGCTGCCCAAGACCAAAAT+AGG - chr8_1:72105463-72105482 None:intergenic 45.0%
TGGCACTAGTTGAGAACCTA+TGG + chr8_1:72105965-72105984 Msa1212260:intron 45.0%
AATACCAACAAACCCCCTTC+TGG - chr8_1:72106110-72106129 None:intergenic 45.0%
! TGCTGCTTGTTGCAAGAGAA+AGG - chr8_1:72106172-72106191 None:intergenic 45.0%
TTGAAGCTCACGGAAGCTAA+AGG - chr8_1:72106225-72106244 None:intergenic 45.0%
CATGGCTACATCTGTCCTAA+CGG - chr8_1:72106267-72106286 None:intergenic 45.0%
! TCTGGTTTGAAAGTGCGGTT+TGG + chr8_1:72106482-72106501 Msa1212260:CDS 45.0%
!! AGTTTGTTGATAGTGCTGGC+CGG + chr8_1:72106516-72106535 Msa1212260:CDS 45.0%
CGCAAGTTATCCTCAGAATC+TGG + chr8_1:72106611-72106630 Msa1212260:CDS 45.0%
CTTGATTCCTTGTTCAAGCC+TGG + chr8_1:72106913-72106932 Msa1212260:CDS 45.0%
AAAAGTCCCAGGCTTGAACA+AGG - chr8_1:72106923-72106942 None:intergenic 45.0%
ACTGCATCAACAAAAGTCCC+AGG - chr8_1:72106934-72106953 None:intergenic 45.0%
CTATCAATTCTGATGGCACG+AGG - chr8_1:72107078-72107097 None:intergenic 45.0%
TCTGATCGATCATCGCTGAG+AGG - chr8_1:72104225-72104244 None:intergenic 50.0%
!! CGGTCAGGGTTTTGCCATTT+TGG + chr8_1:72104287-72104306 Msa1212260:CDS 50.0%
TGAGTGAAAGTTCGGAGGGT+CGG - chr8_1:72104377-72104396 None:intergenic 50.0%
! ATCAGCAAAGGTAGGAGCGT+TGG - chr8_1:72104448-72104467 None:intergenic 50.0%
GGCGTGAGCAATATCAGCAA+AGG - chr8_1:72104460-72104479 None:intergenic 50.0%
GCCGTCTATGACCTTCTTCA+CGG + chr8_1:72104477-72104496 Msa1212260:CDS 50.0%
! GTGGTGAATTTTGTGCAGGG+AGG + chr8_1:72104702-72104721 Msa1212260:intron 50.0%
GATGGTCCAGATTTCAGGCT+TGG - chr8_1:72105244-72105263 None:intergenic 50.0%
! GTCGCAGTAACGGGAAATCA+CGG + chr8_1:72106084-72106103 Msa1212260:CDS 50.0%
CGTTAGGACAGATGTAGCCA+TGG + chr8_1:72106265-72106284 Msa1212260:CDS 50.0%
AGCCTCATCTTCTGTGCATC+AGG + chr8_1:72106322-72106341 Msa1212260:CDS 50.0%
TCATCTTCTGTGCATCAGGC+CGG + chr8_1:72106326-72106345 Msa1212260:CDS 50.0%
AACAGCAATAGAGCTGCTGC+CGG - chr8_1:72106348-72106367 None:intergenic 50.0%
CCACAAAGTTTAACCGTGGC+CGG - chr8_1:72106538-72106557 None:intergenic 50.0%
!! AATCTGGTAGCGGCTCTGAT+TGG + chr8_1:72106627-72106646 Msa1212260:CDS 50.0%
GTGTGTGCGTGCATGTGTAT+AGG - chr8_1:72106721-72106740 None:intergenic 50.0%
CGAAGCTCCGTCAACTTCCT+TGG - chr8_1:72104336-72104355 None:intergenic 55.0%
TTGTGCAGGGAGGATTTGGG+CGG + chr8_1:72104712-72104731 Msa1212260:intron 55.0%
AAACCCTTAGGTTCAGGCGG+TGG - chr8_1:72104800-72104819 None:intergenic 55.0%
GTCTTGGGCAGCAAACACAC+AGG + chr8_1:72105469-72105488 Msa1212260:CDS 55.0%
AACGGGAAATCACGGCCAGA+AGG + chr8_1:72106092-72106111 Msa1212260:CDS 55.0%
ACGGGAAATCACGGCCAGAA+GGG + chr8_1:72106093-72106112 Msa1212260:CDS 55.0%
GAAGATGAGGCTGCTGAACC+AGG - chr8_1:72106314-72106333 None:intergenic 55.0%
GGCCTGATGCACAGAAGATG+AGG - chr8_1:72106327-72106346 None:intergenic 55.0%
CCGGCCACGGTTAAACTTTG+TGG + chr8_1:72106535-72106554 Msa1212260:CDS 55.0%
AGAGCCGCTACCAGATTCTG+AGG - chr8_1:72106624-72106643 None:intergenic 55.0%
TGGCAAAACCCTGACCGGGT+CGG - chr8_1:72104284-72104303 None:intergenic 60.0%
TGTGCAGGGAGGATTTGGGC+GGG + chr8_1:72104713-72104732 Msa1212260:intron 60.0%
ACAGCCACCGCCTGAACCTA+AGG + chr8_1:72104793-72104812 Msa1212260:CDS 60.0%
CAGCCACCGCCTGAACCTAA+GGG + chr8_1:72104794-72104813 Msa1212260:CDS 60.0%
CGGGAAATCACGGCCAGAAG+GGG + chr8_1:72106094-72106113 Msa1212260:CDS 60.0%
GGGAAATCACGGCCAGAAGG+GGG + chr8_1:72106095-72106114 Msa1212260:CDS 60.0%
ACGGCCAGAAGGGGGTTTGT+TGG + chr8_1:72106103-72106122 Msa1212260:CDS 60.0%
!! TTGATAGTGCTGGCCGGCCA+CGG + chr8_1:72106522-72106541 Msa1212260:CDS 60.0%
!! CTGGTAGCGGCTCTGATTGG+AGG + chr8_1:72106630-72106649 Msa1212260:CDS 60.0%
AAACCCTGACCGGGTCGGGT+CGG - chr8_1:72104279-72104298 None:intergenic 65.0%
GGCAAAACCCTGACCGGGTC+GGG - chr8_1:72104283-72104302 None:intergenic 65.0%
ACCACCGTTCCGACCCGACC+CGG + chr8_1:72104267-72104286 Msa1212260:CDS 70.0%
CTGACCGGGTCGGGTCGGAA+CGG - chr8_1:72104274-72104293 None:intergenic 70.0%
GTTCCGACCCGACCCGGTCA+GGG + chr8_1:72104273-72104292 Msa1212260:CDS 70.0%
ACCGGGTCGGGTCGGAACGG+TGG - chr8_1:72104271-72104290 None:intergenic 75.0%
CGTTCCGACCCGACCCGGTC+AGG + chr8_1:72104272-72104291 Msa1212260:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 72104065 72107218 72104065 ID=Msa1212260;Name=Msa1212260
chr8_1 mRNA 72104065 72107218 72104065 ID=Msa1212260-mRNA-1;Parent=Msa1212260;Name=Msa1212260-mRNA-1;_AED=0.12;_eAED=0.12;_QI=145|1|1|1|1|1|6|183|492
chr8_1 exon 72104065 72104498 72104065 ID=Msa1212260-mRNA-1:exon:24303;Parent=Msa1212260-mRNA-1
chr8_1 exon 72104720 72104877 72104720 ID=Msa1212260-mRNA-1:exon:24304;Parent=Msa1212260-mRNA-1
chr8_1 exon 72105444 72105490 72105444 ID=Msa1212260-mRNA-1:exon:24305;Parent=Msa1212260-mRNA-1
chr8_1 exon 72105581 72105644 72105581 ID=Msa1212260-mRNA-1:exon:24306;Parent=Msa1212260-mRNA-1
chr8_1 exon 72106020 72106705 72106020 ID=Msa1212260-mRNA-1:exon:24307;Parent=Msa1212260-mRNA-1
chr8_1 exon 72106801 72107218 72106801 ID=Msa1212260-mRNA-1:exon:24308;Parent=Msa1212260-mRNA-1
chr8_1 five_prime_UTR 72104065 72104209 72104065 ID=Msa1212260-mRNA-1:five_prime_utr;Parent=Msa1212260-mRNA-1
chr8_1 CDS 72104210 72104498 72104210 ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1
chr8_1 CDS 72104720 72104877 72104720 ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1
chr8_1 CDS 72105444 72105490 72105444 ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1
chr8_1 CDS 72105581 72105644 72105581 ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1
chr8_1 CDS 72106020 72106705 72106020 ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1
chr8_1 CDS 72106801 72107035 72106801 ID=Msa1212260-mRNA-1:cds;Parent=Msa1212260-mRNA-1
chr8_1 three_prime_UTR 72107036 72107218 72107036 ID=Msa1212260-mRNA-1:three_prime_utr;Parent=Msa1212260-mRNA-1
Gene Sequence

>Msa1212260

ATGGGTTCTCTTCCTCTCAGCGATGATCGATCAGAAATTGTATTCTTCGACGTAGAAACCACCGTTCCGACCCGACCCGGTCAGGGTTTTGCCATTTTGGAATTCGGAGCCATTCTTGTTTGTCCAAGGAAGTTGACGGAGCTTCGAAACTACTCAACTTTGGTCCGACCCTCCGAACTTTCACTCATCACTCCGTTATCGGAACGATGTAACGGAATCAACGCTGAAGCTGTTTCCAACGCTCCTACCTTTGCTGATATTGCTCACGCCGTCTATGACCTTCTTCACGGGAGGATTTGGGCGGGTCATAATATCATAAGATTTGATTGCGTTCGAATTAGAGATGCATTTGCTGCGATTAAACAGCCACCGCCTGAACCTAAGGGTTTGATCGACTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCTACCTATTTTGGTCTTGGGCAGCAAACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTTCCAGATATATTCACTGAAAATTGTTGGGTTTCACCAAATGCTGTTACAAGAAGTCGCAGTAACGGGAAATCACGGCCAGAAGGGGGTTTGTTGGTATTATCTCCTGAAACTGAAACTCAAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAGCACAGAAATCGCTATTTCAAATGCTGCAGATACCTTTAGCTTCCGTGAGCTTCAAAACGAAATTAATAGAGAATCCGTTAGGACAGATGTAGCCATGGATGAAAAATCCATACAATATTCACCTGGTTCAGCAGCCTCATCTTCTGTGCATCAGGCCGGCAGCAGCTCTATTGCTGTTTTAGAGCCCGAAAAAATATCAATGTCTTCTATTGATGCATCTCTTGTTCCATCTTATTATGGCAGTCAAAGGATAGAATTACATCATGAAGGTTTCCCATTTCAGCTTCATTGTTCTGGTTTGAAAGTGCGGTTTGGAATAAGCACAAAGTTTGTTGATAGTGCTGGCCGGCCACGGTTAAACTTTGTGGTTGATCCATCACCAAGTTTATGTAATGTTCTTGATGCATGTGACAATGTTGCACGCAAGTTATCCTCAGAATCTGGTAGCGGCTCTGATTGGAGGCCAGTTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTATCAGATTGCATATACCTACAGCAGTATGTGAAGAGATTGCCATTTACGCAACAGAAATATATCAAAAAGAATCATCTGGATTTGTGCAAAGGCTTCTCTTCTGCAAGTTCGACGCTGCTGAACTTGATTCCTTGTTCAAGCCTGGGACTTTTGTTGATGCAGTCTTTTCGTTAGATCTGTATGACTATCATCAGAATGCAGGGATTAAATTGGTTGCCAAGAAATTGACCATTCATTGCAACTAG

Protein sequence

>Msa1212260

MGSLPLSDDRSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPSELSLITPLSERCNGINAEAVSNAPTFADIAHAVYDLLHGRIWAGHNIIRFDCVRIRDAFAAIKQPPPEPKGLIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLLVLSPETETQDKNHPILSLATSSTEIAISNAADTFSFRELQNEINRESVRTDVAMDEKSIQYSPGSAASSSVHQAGSSSIAVLEPEKISMSSIDASLVPSYYGSQRIELHHEGFPFQLHCSGLKVRFGISTKFVDSAGRPRLNFVVDPSPSLCNVLDACDNVARKLSSESGSGSDWRPVVIRKEGFFNYPTIRLHIPTAVCEEIAIYATEIYQKESSGFVQRLLFCKFDAAELDSLFKPGTFVDAVFSLDLYDYHQNAGIKLVAKKLTIHCN*