AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1259900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259900 MtrunA17_Chr4g0061011 96.951 492 15 0 1 492 1 492 0.0 989
Msa1259900 MtrunA17_Chr8g0382661 62.621 206 74 1 12 214 16 221 7.61e-88 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259900 AT5G61390.1 56.914 499 191 7 1 490 4 487 0.0 535
Msa1259900 AT5G07710.1 55.967 486 189 7 8 490 4 467 1.55e-179 512
Msa1259900 AT1G74390.1 53.815 498 211 4 8 489 8 502 6.49e-173 496
Msa1259900 AT1G74390.2 53.815 498 211 4 8 489 8 502 6.49e-173 496
Msa1259900 AT1G74390.3 47.765 358 168 4 148 489 1 355 1.59e-95 293
Msa1259900 AT1G74390.4 47.472 356 168 4 150 489 1 353 9.80e-94 289
Msa1259900 AT4G39810.1 62.687 201 75 0 11 211 8 208 1.07e-85 265

Find 121 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTCTTGCTACCTATTT+TGG 0.169699 8_2:+61733980 Msa1259900:CDS
ATATATTTCTGTTGCGTAAA+TGG 0.185111 8_2:-61735363 None:intergenic
TTATCTTGAGTTTCAGTTTC+AGG 0.200693 8_2:-61734667 None:intergenic
CCATTTCAGCTTCATTGTTC+TGG 0.219236 8_2:+61734997 Msa1259900:CDS
ATTGGAGGCCAGTTGTTATT+AGG 0.257879 8_2:+61735178 Msa1259900:CDS
TCTCTTGTTCCATCTTATTA+TGG 0.268745 8_2:+61734940 Msa1259900:CDS
TTCACTCATCACTCCGTTAT+CGG 0.283917 8_2:+61732922 Msa1259900:CDS
GCAATGAATGGTCAATTTCT+TGG 0.292445 8_2:-61735540 None:intergenic
CTGTGCAACAGTTCTATTCT+TGG 0.303572 8_2:+61734156 Msa1259900:CDS
GTTTATCCTTGTAATCTATA+TGG 0.307589 8_2:-61735736 None:intergenic
CCAGAACAATGAAGCTGAAA+TGG 0.309859 8_2:-61734997 None:intergenic
TCAGAATGCAGGGATTAAAT+TGG 0.313072 8_2:+61735514 Msa1259900:CDS
TAAGGGTTTGATCGACTCTT+TGG 0.322291 8_2:+61733344 Msa1259900:CDS
CGACTTCTTGTAACAGCATT+TGG 0.324821 8_2:-61734598 None:intergenic
ACAAGAATTCAGAAATGTTC+TGG 0.353071 8_2:-61732699 None:intergenic
CGAAGCTCCGTCAACTTCCT+TGG 0.356669 8_2:-61732866 None:intergenic
CCGGCCACGGTTAAACTTTG+TGG 0.358516 8_2:+61735068 Msa1259900:CDS
GACCATTCATTGCAACTAGA+AGG 0.364238 8_2:+61735550 Msa1259900:exon
CTTGATTCCTTGTTCAAGCC+TGG 0.376675 8_2:+61735446 Msa1259900:CDS
TTGCTGCCCAAGACCAAAAT+AGG 0.381690 8_2:-61733993 None:intergenic
CGTTCCGACCCGACCCGGTC+AGG 0.385412 8_2:+61732805 Msa1259900:CDS
GGCAAAACCCTGACCGGGTC+GGG 0.387039 8_2:-61732813 None:intergenic
CCGTTACATCGTTCCGATAA+CGG 0.394839 8_2:-61732935 None:intergenic
AATGGCTCCGAATTCCAAAA+TGG 0.397194 8_2:-61732834 None:intergenic
CGCAAGTTATCCTCAGAATC+TGG 0.402038 8_2:+61735144 Msa1259900:CDS
TATATTCACTGAAAATTGTT+GGG 0.410842 8_2:+61734570 Msa1259900:CDS
TTCCTTCTAGTTGCAATGAA+TGG 0.413016 8_2:-61735552 None:intergenic
CCAGTTGTTATTAGGAAAGA+AGG 0.415626 8_2:+61735186 Msa1259900:CDS
GAACTGTTGCACAGTATTTG+AGG 0.416121 8_2:-61734147 None:intergenic
AGCCTCATCTTCTGTGCATC+AGG 0.420868 8_2:+61734855 Msa1259900:CDS
TTCAGAAATGTTCTGGTACT+AGG 0.425729 8_2:-61732692 None:intergenic
CCTTCTTTCCTAATAACAAC+TGG 0.442874 8_2:-61735186 None:intergenic
TTACAAGAAGTCGCAGTAAC+GGG 0.449771 8_2:+61734608 Msa1259900:CDS
CGGAGTGATGAGTGAAAGTT+CGG 0.453505 8_2:-61732915 None:intergenic
ATATATTCACTGAAAATTGT+TGG 0.453559 8_2:+61734569 Msa1259900:CDS
TCGATCAAACCCTTAGGTTC+AGG 0.456957 8_2:-61733336 None:intergenic
ACTTACTGCAATCTGATAGT+AGG 0.458699 8_2:-61735222 None:intergenic
TGCTGCTTGTTGCAAGAGAA+AGG 0.461836 8_2:-61734702 None:intergenic
AGATTGAAGCGTAGATTAGA+TGG 0.462446 8_2:+61735579 Msa1259900:three_prime_UTR
GCCGTCTATGACCTTCTTCA+CGG 0.464019 8_2:+61733010 Msa1259900:CDS
CAAAATGGCAAAACCCTGAC+CGG 0.464089 8_2:-61732819 None:intergenic
TCAGGAGCTTAGATGATGTT+CGG 0.464792 8_2:+61734110 Msa1259900:intron
TCTATATGGAGTTGAGCATA+TGG 0.464933 8_2:-61735722 None:intergenic
ACAGCCACCGCCTGAACCTA+AGG 0.465007 8_2:+61733326 Msa1259900:CDS
TTGATAGTGCTGGCCGGCCA+CGG 0.465393 8_2:+61735055 Msa1259900:CDS
AATCTGGTAGCGGCTCTGAT+TGG 0.473924 8_2:+61735160 Msa1259900:CDS
TACTAGGAAATAAATGTACT+TGG 0.479518 8_2:-61732676 None:intergenic
ACAAAGTTTGTTGATAGTGC+TGG 0.479560 8_2:+61735045 Msa1259900:CDS
TCTGGTTTGAAAGTGCGGTT+TGG 0.485291 8_2:+61735015 Msa1259900:CDS
CAGAACAATGAAGCTGAAAT+GGG 0.488231 8_2:-61734996 None:intergenic
TATGACTATCATCAGAATGC+AGG 0.494678 8_2:+61735503 Msa1259900:CDS
CAAAAGTTTGGAAGAAGAGC+TGG 0.497150 8_2:+61733378 Msa1259900:CDS
TTGATTCCTTGTTCAAGCCT+GGG 0.497172 8_2:+61735447 Msa1259900:CDS
GAAATAAATGTACTTGGCTA+AGG 0.499314 8_2:-61732670 None:intergenic
GCTTCGAAACTACTCAACTT+TGG 0.501482 8_2:+61732883 Msa1259900:CDS
TTGAAGCTCACGGAAGCTAA+AGG 0.502180 8_2:-61734755 None:intergenic
ATCAGCAAAGGTAGGAGCGT+TGG 0.504280 8_2:-61732978 None:intergenic
GAAGATGAGGCTGCTGAACC+AGG 0.514934 8_2:-61734844 None:intergenic
AGGATAGAATTACATCATGA+AGG 0.518374 8_2:+61734970 Msa1259900:CDS
CTTTGACTGCCATAATAAGA+TGG 0.520227 8_2:-61734949 None:intergenic
CTGGTAGCGGCTCTGATTGG+AGG 0.524236 8_2:+61735163 Msa1259900:CDS
GTTCCGACCCGACCCGGTCA+GGG 0.524671 8_2:+61732806 Msa1259900:CDS
AATCATCTGGATTTGTGCAA+AGG 0.525281 8_2:+61735393 Msa1259900:CDS
CATCTTATTATGGCAGTCAA+AGG 0.535720 8_2:+61734950 Msa1259900:CDS
CCACAAAGTTTAACCGTGGC+CGG 0.539578 8_2:-61735068 None:intergenic
CTTCCTTGGACAAACAAGAA+TGG 0.541331 8_2:-61732852 None:intergenic
AAAGAGTCGATCAAACCCTT+AGG 0.543678 8_2:-61733342 None:intergenic
CGGGAAATCACGGCCAGAAG+GGG 0.544051 8_2:+61734627 Msa1259900:CDS
AACGGGAAATCACGGCCAGA+AGG 0.548226 8_2:+61734625 Msa1259900:CDS
GAGCCATTCTTGTTTGTCCA+AGG 0.549208 8_2:+61732849 Msa1259900:CDS
TCAAGAACATTACATAAACT+TGG 0.549671 8_2:-61735102 None:intergenic
TATGAAGCGAACCGTGAAGA+AGG 0.552205 8_2:-61733021 None:intergenic
ATTGTTCTGGTTTGAAAGTG+CGG 0.557422 8_2:+61735010 Msa1259900:CDS
TGTTTGTCCAAGGAAGTTGA+CGG 0.563235 8_2:+61732859 Msa1259900:CDS
CTGACCGGGTCGGGTCGGAA+CGG 0.564383 8_2:-61732804 None:intergenic
AAATTAATAGAGAATCCGTT+AGG 0.565242 8_2:+61734782 Msa1259900:CDS
AATCTTTGCAAGAGAAACAA+TGG 0.568170 8_2:-61735636 None:intergenic
GTTACAAGAAGTCGCAGTAA+CGG 0.569792 8_2:+61734607 Msa1259900:CDS
ACGGGAAATCACGGCCAGAA+GGG 0.570522 8_2:+61734626 Msa1259900:CDS
CTTGTTGCAAGAGAAAGGAT+TGG 0.571982 8_2:-61734697 None:intergenic
GTCGCAGTAACGGGAAATCA+CGG 0.575047 8_2:+61734617 Msa1259900:CDS
CATGGCTACATCTGTCCTAA+CGG 0.575326 8_2:-61734797 None:intergenic
GGTTAATCTATCAATTCTGA+TGG 0.576569 8_2:-61735615 None:intergenic
TCATCTTCTGTGCATCAGGC+CGG 0.578173 8_2:+61734859 Msa1259900:CDS
TTGTGCAGGGAGGATTTGGG+CGG 0.582583 8_2:+61733245 Msa1259900:intron
AAACCCTTAGGTTCAGGCGG+TGG 0.584405 8_2:-61733330 None:intergenic
ACCGGGTCGGGTCGGAACGG+TGG 0.585225 8_2:-61732801 None:intergenic
ACATTACATAAACTTGGTGA+TGG 0.585353 8_2:-61735096 None:intergenic
TCAACTCCATATAGATTACA+AGG 0.590237 8_2:+61735730 Msa1259900:three_prime_UTR
TGAGTGAAAGTTCGGAGGGT+CGG 0.593095 8_2:-61732907 None:intergenic
TGGCAAAACCCTGACCGGGT+CGG 0.593613 8_2:-61732814 None:intergenic
ATCTCTTCACATACTGCTGT+AGG 0.599633 8_2:-61735338 None:intergenic
ATGACTATCATCAGAATGCA+GGG 0.600817 8_2:+61735504 Msa1259900:CDS
TTATCCTCAGAATCTGGTAG+CGG 0.601161 8_2:+61735150 Msa1259900:CDS
TGAACCAGGTGAATATTGTA+TGG 0.606211 8_2:-61734830 None:intergenic
ACTGCATCAACAAAAGTCCC+AGG 0.606468 8_2:-61735464 None:intergenic
AAACCCTGACCGGGTCGGGT+CGG 0.607699 8_2:-61732809 None:intergenic
AAGAAGAGCTGGTAACATGA+AGG 0.607820 8_2:+61733389 Msa1259900:CDS
AAAAGTCCCAGGCTTGAACA+AGG 0.615128 8_2:-61735453 None:intergenic
GTGATGAGTGAAAGTTCGGA+GGG 0.615353 8_2:-61732911 None:intergenic
CGTTAGGACAGATGTAGCCA+TGG 0.617479 8_2:+61734798 Msa1259900:CDS
AACAGCAATAGAGCTGCTGC+CGG 0.617637 8_2:-61734878 None:intergenic
GGGAAATCACGGCCAGAAGG+GGG 0.629891 8_2:+61734628 Msa1259900:CDS
AGAGCCGCTACCAGATTCTG+AGG 0.631582 8_2:-61735154 None:intergenic
TGTGCAGGGAGGATTTGGGC+GGG 0.632991 8_2:+61733246 Msa1259900:intron
CAGCCACCGCCTGAACCTAA+GGG 0.635006 8_2:+61733327 Msa1259900:CDS
CCGTTATCGGAACGATGTAA+CGG 0.636088 8_2:+61732935 Msa1259900:CDS
GGCGTGAGCAATATCAGCAA+AGG 0.636460 8_2:-61732990 None:intergenic
GGCCTGATGCACAGAAGATG+AGG 0.637574 8_2:-61734857 None:intergenic
AAAATGGCAAAACCCTGACC+GGG 0.637699 8_2:-61732818 None:intergenic
AGTTTGTTGATAGTGCTGGC+CGG 0.638222 8_2:+61735049 Msa1259900:CDS
TGAGCAATATCAGCAAAGGT+AGG 0.643892 8_2:-61732986 None:intergenic
CTATCAATTCTGATGGCACG+AGG 0.647718 8_2:-61735608 None:intergenic
ATCAAACCCTTAGGTTCAGG+CGG 0.649042 8_2:-61733333 None:intergenic
AAATCCATACAATATTCACC+TGG 0.654350 8_2:+61734826 Msa1259900:CDS
AGTGATGAGTGAAAGTTCGG+AGG 0.655173 8_2:-61732912 None:intergenic
GTCTTGGGCAGCAAACACAC+AGG 0.668051 8_2:+61734002 Msa1259900:CDS
ACCGTGAAGAAGGTCATAGA+CGG 0.669934 8_2:-61733011 None:intergenic
TTTATTCATTTGTTTAAACG+CGG 0.683638 8_2:-61732599 None:intergenic
TCTGATCGATCATCGCTGAG+AGG 0.700110 8_2:-61732755 None:intergenic
TCAACCACAAAGTTTAACCG+TGG 0.732512 8_2:-61735072 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTCTTTTAAATGTT+AGG + chr8_2:61733065-61733084 Msa1259900:intron 15.0%
!!! ATCTTTTCTTTTAAATGTTA+GGG + chr8_2:61733066-61733085 Msa1259900:intron 15.0%
!!! CTCTTTAAAATTAATTAGAA+TGG - chr8_2:61734293-61734312 None:intergenic 15.0%
!! TTTATTCATTTGTTTAAACG+CGG - chr8_2:61732602-61732621 None:intergenic 20.0%
!! TATATGCTTATTACATTCAT+AGG + chr8_2:61733438-61733457 Msa1259900:intron 20.0%
!! ATATGCTTATTACATTCATA+GGG + chr8_2:61733439-61733458 Msa1259900:intron 20.0%
!! TATCATAAGCAAAAAGAAAA+TGG - chr8_2:61734079-61734098 None:intergenic 20.0%
!!! TTTTAAAGAGAAAAAAAGTG+TGG + chr8_2:61734303-61734322 Msa1259900:intron 20.0%
!! ATATATTCACTGAAAATTGT+TGG + chr8_2:61734569-61734588 Msa1259900:CDS 20.0%
!! TATATTCACTGAAAATTGTT+GGG + chr8_2:61734570-61734589 Msa1259900:CDS 20.0%
!!! AGAAGACATTGATATTTTTT+CGG - chr8_2:61734911-61734930 None:intergenic 20.0%
!! ATATATCAAAAAGAATCATC+TGG + chr8_2:61735380-61735399 Msa1259900:CDS 20.0%
!!! GTTCACATTTATAAATTTTC+TGG + chr8_2:61735686-61735705 Msa1259900:three_prime_UTR 20.0%
! TACTAGGAAATAAATGTACT+TGG - chr8_2:61732679-61732698 None:intergenic 25.0%
! TGCTTTCAATTTCGAAAAAT+GGG + chr8_2:61732725-61732744 Msa1259900:exon 25.0%
! TTGCAAATTATTACATTTGC+AGG + chr8_2:61733158-61733177 Msa1259900:intron 25.0%
! AATGCTTTGTAGGTTAATTA+GGG + chr8_2:61733206-61733225 Msa1259900:intron 25.0%
! ATGAATCATTTCTACAACAA+TGG - chr8_2:61734226-61734245 None:intergenic 25.0%
! TAGAATACTAAATATCTGGA+AGG - chr8_2:61734478-61734497 None:intergenic 25.0%
! TCCAGATATTTAGTATTCTA+TGG + chr8_2:61734478-61734497 Msa1259900:intron 25.0%
!! ATTATCATCATTTTCACCAT+AGG - chr8_2:61734517-61734536 None:intergenic 25.0%
!! CAATTTTCAGTGAATATATC+TGG - chr8_2:61734568-61734587 None:intergenic 25.0%
! AAATTAATAGAGAATCCGTT+AGG + chr8_2:61734782-61734801 Msa1259900:CDS 25.0%
!!! GAAGACATTGATATTTTTTC+GGG - chr8_2:61734910-61734929 None:intergenic 25.0%
! TCAAGAACATTACATAAACT+TGG - chr8_2:61735105-61735124 None:intergenic 25.0%
!! ATATATTTCTGTTGCGTAAA+TGG - chr8_2:61735366-61735385 None:intergenic 25.0%
!!! ATAAATTTTCTGGTTACTCA+TGG + chr8_2:61735696-61735715 Msa1259900:three_prime_UTR 25.0%
GAAATAAATGTACTTGGCTA+AGG - chr8_2:61732673-61732692 None:intergenic 30.0%
ACAAGAATTCAGAAATGTTC+TGG - chr8_2:61732702-61732721 None:intergenic 30.0%
CTGCTTTCAATTTCGAAAAA+TGG + chr8_2:61732724-61732743 Msa1259900:exon 30.0%
! TATTACATTTGCAGGTTTTG+AGG + chr8_2:61733166-61733185 Msa1259900:intron 30.0%
CAATGCTTTGTAGGTTAATT+AGG + chr8_2:61733205-61733224 Msa1259900:intron 30.0%
TGTAGGTTAATTAGGGTTAA+TGG + chr8_2:61733213-61733232 Msa1259900:intron 30.0%
!!! GTTTTGTTGACTCAAAAGTT+TGG + chr8_2:61733366-61733385 Msa1259900:CDS 30.0%
AAAGTTATTCCAAACAGAAG+TGG + chr8_2:61733641-61733660 Msa1259900:intron 30.0%
! CAATTTTATCCACTTCTGTT+TGG - chr8_2:61733653-61733672 None:intergenic 30.0%
CAATCACGTAATCAATTCAT+TGG + chr8_2:61733684-61733703 Msa1259900:intron 30.0%
!!! ACTAGAGCATTACACTTTTT+TGG + chr8_2:61733886-61733905 Msa1259900:intron 30.0%
!!! CTAGAGCATTACACTTTTTT+GGG + chr8_2:61733887-61733906 Msa1259900:intron 30.0%
!!! TTACACTTTTTTGGGAATGA+AGG + chr8_2:61733895-61733914 Msa1259900:intron 30.0%
TATGATATAGTTGCATCTTC+AGG + chr8_2:61734092-61734111 Msa1259900:intron 30.0%
TTGTTTGCAAAGACTTAACA+AGG - chr8_2:61734195-61734214 None:intergenic 30.0%
GCCATAGAATACTAAATATC+TGG - chr8_2:61734482-61734501 None:intergenic 30.0%
GATAATATCTCTGTCTTTAC+AGG + chr8_2:61734531-61734550 Msa1259900:intron 30.0%
TTATCTTGAGTTTCAGTTTC+AGG - chr8_2:61734670-61734689 None:intergenic 30.0%
!!! TAATTTCGTTTTGAAGCTCA+CGG - chr8_2:61734768-61734787 None:intergenic 30.0%
! TTGTATGGATTTTTCATCCA+TGG - chr8_2:61734818-61734837 None:intergenic 30.0%
AAATCCATACAATATTCACC+TGG + chr8_2:61734826-61734845 Msa1259900:CDS 30.0%
TCTCTTGTTCCATCTTATTA+TGG + chr8_2:61734940-61734959 Msa1259900:CDS 30.0%
AGGATAGAATTACATCATGA+AGG + chr8_2:61734970-61734989 Msa1259900:CDS 30.0%
! ACATTACATAAACTTGGTGA+TGG - chr8_2:61735099-61735118 None:intergenic 30.0%
GGTTAATCTATCAATTCTGA+TGG - chr8_2:61735618-61735637 None:intergenic 30.0%
AATCTTTGCAAGAGAAACAA+TGG - chr8_2:61735639-61735658 None:intergenic 30.0%
TTCAGAAATGTTCTGGTACT+AGG - chr8_2:61732695-61732714 None:intergenic 35.0%
!!! GGTTTTGCCATTTTGGAATT+CGG + chr8_2:61732827-61732846 Msa1259900:CDS 35.0%
TGTCTTTGTCAATGCTTTGT+AGG + chr8_2:61733196-61733215 Msa1259900:intron 35.0%
AGGTTAATTAGGGTTAATGG+TGG + chr8_2:61733216-61733235 Msa1259900:intron 35.0%
GTAATCGAAGAGAAAATGAG+AGG + chr8_2:61733536-61733555 Msa1259900:intron 35.0%
GAATTGATTACGTGATTGCA+GGG - chr8_2:61733682-61733701 None:intergenic 35.0%
TGAATTGATTACGTGATTGC+AGG - chr8_2:61733683-61733702 None:intergenic 35.0%
! ATCAATTCATTGGTGACCAT+TGG + chr8_2:61733694-61733713 Msa1259900:intron 35.0%
TAAATACCAAGCCTGAAATC+TGG + chr8_2:61733768-61733787 Msa1259900:intron 35.0%
TGTACTGAATGCTTGAATTC+CGG + chr8_2:61733822-61733841 Msa1259900:intron 35.0%
ACGTTTGGAAGGGATAAATT+TGG - chr8_2:61733852-61733871 None:intergenic 35.0%
! ATGCTCTAGTTTGCATTCAA+GGG - chr8_2:61733876-61733895 None:intergenic 35.0%
! AATGCTCTAGTTTGCATTCA+AGG - chr8_2:61733877-61733896 None:intergenic 35.0%
TTTATGTTGTTCACTGCAGA+TGG + chr8_2:61733958-61733977 Msa1259900:intron 35.0%
!!! TTGCTACCTATTTTGGTCTT+GGG + chr8_2:61733987-61734006 Msa1259900:CDS 35.0%
TTCTAAACCTGATGCTTGTT+TGG + chr8_2:61734337-61734356 Msa1259900:intron 35.0%
TGAACCAGGTGAATATTGTA+TGG - chr8_2:61734833-61734852 None:intergenic 35.0%
CTTTGACTGCCATAATAAGA+TGG - chr8_2:61734952-61734971 None:intergenic 35.0%
CATCTTATTATGGCAGTCAA+AGG + chr8_2:61734950-61734969 Msa1259900:CDS 35.0%
CAGAACAATGAAGCTGAAAT+GGG - chr8_2:61734999-61735018 None:intergenic 35.0%
!! ATTGTTCTGGTTTGAAAGTG+CGG + chr8_2:61735010-61735029 Msa1259900:CDS 35.0%
!! ACAAAGTTTGTTGATAGTGC+TGG + chr8_2:61735045-61735064 Msa1259900:CDS 35.0%
CCTTCTTTCCTAATAACAAC+TGG - chr8_2:61735189-61735208 None:intergenic 35.0%
! CCAGTTGTTATTAGGAAAGA+AGG + chr8_2:61735186-61735205 Msa1259900:CDS 35.0%
ACTTACTGCAATCTGATAGT+AGG - chr8_2:61735225-61735244 None:intergenic 35.0%
AATCATCTGGATTTGTGCAA+AGG + chr8_2:61735393-61735412 Msa1259900:CDS 35.0%
TATGACTATCATCAGAATGC+AGG + chr8_2:61735503-61735522 Msa1259900:CDS 35.0%
ATGACTATCATCAGAATGCA+GGG + chr8_2:61735504-61735523 Msa1259900:CDS 35.0%
TCAGAATGCAGGGATTAAAT+TGG + chr8_2:61735514-61735533 Msa1259900:CDS 35.0%
GCAATGAATGGTCAATTTCT+TGG - chr8_2:61735543-61735562 None:intergenic 35.0%
! TTCCTTCTAGTTGCAATGAA+TGG - chr8_2:61735555-61735574 None:intergenic 35.0%
AGATTGAAGCGTAGATTAGA+TGG + chr8_2:61735579-61735598 Msa1259900:three_prime_UTR 35.0%
TCTATATGGAGTTGAGCATA+TGG - chr8_2:61735725-61735744 None:intergenic 35.0%
AATGGCTCCGAATTCCAAAA+TGG - chr8_2:61732837-61732856 None:intergenic 40.0%
CTTCCTTGGACAAACAAGAA+TGG - chr8_2:61732855-61732874 None:intergenic 40.0%
TGTTTGTCCAAGGAAGTTGA+CGG + chr8_2:61732859-61732878 Msa1259900:CDS 40.0%
GCTTCGAAACTACTCAACTT+TGG + chr8_2:61732883-61732902 Msa1259900:CDS 40.0%
TTCACTCATCACTCCGTTAT+CGG + chr8_2:61732922-61732941 Msa1259900:CDS 40.0%
TGAGCAATATCAGCAAAGGT+AGG - chr8_2:61732989-61733008 None:intergenic 40.0%
TGTAATCACATGTCAGACGT+TGG - chr8_2:61733122-61733141 None:intergenic 40.0%
!! AATGGTGGTGAATTTTGTGC+AGG + chr8_2:61733231-61733250 Msa1259900:intron 40.0%
!! ATGGTGGTGAATTTTGTGCA+GGG + chr8_2:61733232-61733251 Msa1259900:intron 40.0%
! AATTTTGTGCAGGGAGGATT+TGG + chr8_2:61733241-61733260 Msa1259900:intron 40.0%
! ATTTTGTGCAGGGAGGATTT+GGG + chr8_2:61733242-61733261 Msa1259900:intron 40.0%
AAAGAGTCGATCAAACCCTT+AGG - chr8_2:61733345-61733364 None:intergenic 40.0%
! TAAGGGTTTGATCGACTCTT+TGG + chr8_2:61733344-61733363 Msa1259900:CDS 40.0%
CAAAAGTTTGGAAGAAGAGC+TGG + chr8_2:61733378-61733397 Msa1259900:CDS 40.0%
AAGAAGAGCTGGTAACATGA+AGG + chr8_2:61733389-61733408 Msa1259900:CDS 40.0%
! TCATTGGTGACCATTGGATT+CGG + chr8_2:61733700-61733719 Msa1259900:intron 40.0%
ACTATCTGATCCGAATCCAA+TGG - chr8_2:61733713-61733732 None:intergenic 40.0%
CCATCTGATCCTTGATTCAA+CGG + chr8_2:61733792-61733811 Msa1259900:intron 40.0%
GTACTGAATGCTTGAATTCC+GGG + chr8_2:61733823-61733842 Msa1259900:intron 40.0%
AAGGGATAAATTTGGACACC+CGG - chr8_2:61733844-61733863 None:intergenic 40.0%
ATTCAAGGGAACGTTTGGAA+GGG - chr8_2:61733862-61733881 None:intergenic 40.0%
TTTGCATTCAAGGGAACGTT+TGG - chr8_2:61733867-61733886 None:intergenic 40.0%
! GCTACTCTTGCTACCTATTT+TGG + chr8_2:61733980-61733999 Msa1259900:CDS 40.0%
!!! CTTGCTACCTATTTTGGTCT+TGG + chr8_2:61733986-61734005 Msa1259900:CDS 40.0%
AGCAAACACACAGGTAATTG+TGG + chr8_2:61734011-61734030 Msa1259900:intron 40.0%
! AGCAGATGACTAGAAAGCAT+GGG - chr8_2:61734052-61734071 None:intergenic 40.0%
TAGCAGATGACTAGAAAGCA+TGG - chr8_2:61734053-61734072 None:intergenic 40.0%
TCAGGAGCTTAGATGATGTT+CGG + chr8_2:61734110-61734129 Msa1259900:intron 40.0%
GAACTGTTGCACAGTATTTG+AGG - chr8_2:61734150-61734169 None:intergenic 40.0%
CTGTGCAACAGTTCTATTCT+TGG + chr8_2:61734156-61734175 Msa1259900:CDS 40.0%
TGTTCTACCAAACAAGCATC+AGG - chr8_2:61734347-61734366 None:intergenic 40.0%
CGACTTCTTGTAACAGCATT+TGG - chr8_2:61734601-61734620 None:intergenic 40.0%
GTTACAAGAAGTCGCAGTAA+CGG + chr8_2:61734607-61734626 Msa1259900:CDS 40.0%
TTACAAGAAGTCGCAGTAAC+GGG + chr8_2:61734608-61734627 Msa1259900:CDS 40.0%
CTTGTTGCAAGAGAAAGGAT+TGG - chr8_2:61734700-61734719 None:intergenic 40.0%
CCAGAACAATGAAGCTGAAA+TGG - chr8_2:61735000-61735019 None:intergenic 40.0%
CCATTTCAGCTTCATTGTTC+TGG + chr8_2:61734997-61735016 Msa1259900:CDS 40.0%
TCAACCACAAAGTTTAACCG+TGG - chr8_2:61735075-61735094 None:intergenic 40.0%
TTATCCTCAGAATCTGGTAG+CGG + chr8_2:61735150-61735169 Msa1259900:CDS 40.0%
! ATTGGAGGCCAGTTGTTATT+AGG + chr8_2:61735178-61735197 Msa1259900:CDS 40.0%
ATCTCTTCACATACTGCTGT+AGG - chr8_2:61735341-61735360 None:intergenic 40.0%
TTGATTCCTTGTTCAAGCCT+GGG + chr8_2:61735447-61735466 Msa1259900:CDS 40.0%
GACCATTCATTGCAACTAGA+AGG + chr8_2:61735550-61735569 Msa1259900:exon 40.0%
AAAATGGCAAAACCCTGACC+GGG - chr8_2:61732821-61732840 None:intergenic 45.0%
CAAAATGGCAAAACCCTGAC+CGG - chr8_2:61732822-61732841 None:intergenic 45.0%
! GAGCCATTCTTGTTTGTCCA+AGG + chr8_2:61732849-61732868 Msa1259900:CDS 45.0%
GTGATGAGTGAAAGTTCGGA+GGG - chr8_2:61732914-61732933 None:intergenic 45.0%
AGTGATGAGTGAAAGTTCGG+AGG - chr8_2:61732915-61732934 None:intergenic 45.0%
CGGAGTGATGAGTGAAAGTT+CGG - chr8_2:61732918-61732937 None:intergenic 45.0%
CCGTTACATCGTTCCGATAA+CGG - chr8_2:61732938-61732957 None:intergenic 45.0%
CCGTTATCGGAACGATGTAA+CGG + chr8_2:61732935-61732954 Msa1259900:CDS 45.0%
ACCGTGAAGAAGGTCATAGA+CGG - chr8_2:61733014-61733033 None:intergenic 45.0%
TATGAAGCGAACCGTGAAGA+AGG - chr8_2:61733024-61733043 None:intergenic 45.0%
TGTAGCGTAGCACCTTCTAA+TGG + chr8_2:61733093-61733112 Msa1259900:intron 45.0%
!! AGACGTTGGCTTCCATTAGA+AGG - chr8_2:61733108-61733127 None:intergenic 45.0%
ATCAAACCCTTAGGTTCAGG+CGG - chr8_2:61733336-61733355 None:intergenic 45.0%
TCGATCAAACCCTTAGGTTC+AGG - chr8_2:61733339-61733358 None:intergenic 45.0%
GATCAGATGGTCCAGATTTC+AGG - chr8_2:61733782-61733801 None:intergenic 45.0%
CCGTTGAATCAAGGATCAGA+TGG - chr8_2:61733795-61733814 None:intergenic 45.0%
CATCAGTGACCGTTGAATCA+AGG - chr8_2:61733804-61733823 None:intergenic 45.0%
CATTCAAGGGAACGTTTGGA+AGG - chr8_2:61733863-61733882 None:intergenic 45.0%
TTGCTGCCCAAGACCAAAAT+AGG - chr8_2:61733996-61734015 None:intergenic 45.0%
TGGCACTAGTTGAGAACCTA+TGG + chr8_2:61734498-61734517 Msa1259900:intron 45.0%
AATACCAACAAACCCCCTTC+TGG - chr8_2:61734643-61734662 None:intergenic 45.0%
! TGCTGCTTGTTGCAAGAGAA+AGG - chr8_2:61734705-61734724 None:intergenic 45.0%
TTGAAGCTCACGGAAGCTAA+AGG - chr8_2:61734758-61734777 None:intergenic 45.0%
CATGGCTACATCTGTCCTAA+CGG - chr8_2:61734800-61734819 None:intergenic 45.0%
! TCTGGTTTGAAAGTGCGGTT+TGG + chr8_2:61735015-61735034 Msa1259900:CDS 45.0%
!! AGTTTGTTGATAGTGCTGGC+CGG + chr8_2:61735049-61735068 Msa1259900:CDS 45.0%
CGCAAGTTATCCTCAGAATC+TGG + chr8_2:61735144-61735163 Msa1259900:CDS 45.0%
CTTGATTCCTTGTTCAAGCC+TGG + chr8_2:61735446-61735465 Msa1259900:CDS 45.0%
AAAAGTCCCAGGCTTGAACA+AGG - chr8_2:61735456-61735475 None:intergenic 45.0%
ACTGCATCAACAAAAGTCCC+AGG - chr8_2:61735467-61735486 None:intergenic 45.0%
CTATCAATTCTGATGGCACG+AGG - chr8_2:61735611-61735630 None:intergenic 45.0%
TCTGATCGATCATCGCTGAG+AGG - chr8_2:61732758-61732777 None:intergenic 50.0%
!! CGGTCAGGGTTTTGCCATTT+TGG + chr8_2:61732820-61732839 Msa1259900:CDS 50.0%
TGAGTGAAAGTTCGGAGGGT+CGG - chr8_2:61732910-61732929 None:intergenic 50.0%
! ATCAGCAAAGGTAGGAGCGT+TGG - chr8_2:61732981-61733000 None:intergenic 50.0%
GGCGTGAGCAATATCAGCAA+AGG - chr8_2:61732993-61733012 None:intergenic 50.0%
GCCGTCTATGACCTTCTTCA+CGG + chr8_2:61733010-61733029 Msa1259900:CDS 50.0%
! GTGGTGAATTTTGTGCAGGG+AGG + chr8_2:61733235-61733254 Msa1259900:intron 50.0%
GATGGTCCAGATTTCAGGCT+TGG - chr8_2:61733777-61733796 None:intergenic 50.0%
! GTCGCAGTAACGGGAAATCA+CGG + chr8_2:61734617-61734636 Msa1259900:CDS 50.0%
CGTTAGGACAGATGTAGCCA+TGG + chr8_2:61734798-61734817 Msa1259900:CDS 50.0%
AGCCTCATCTTCTGTGCATC+AGG + chr8_2:61734855-61734874 Msa1259900:CDS 50.0%
TCATCTTCTGTGCATCAGGC+CGG + chr8_2:61734859-61734878 Msa1259900:CDS 50.0%
AACAGCAATAGAGCTGCTGC+CGG - chr8_2:61734881-61734900 None:intergenic 50.0%
CCACAAAGTTTAACCGTGGC+CGG - chr8_2:61735071-61735090 None:intergenic 50.0%
!! AATCTGGTAGCGGCTCTGAT+TGG + chr8_2:61735160-61735179 Msa1259900:CDS 50.0%
GTGTGTGCGTGCATGTGTAT+AGG - chr8_2:61735254-61735273 None:intergenic 50.0%
CGAAGCTCCGTCAACTTCCT+TGG - chr8_2:61732869-61732888 None:intergenic 55.0%
TTGTGCAGGGAGGATTTGGG+CGG + chr8_2:61733245-61733264 Msa1259900:intron 55.0%
AAACCCTTAGGTTCAGGCGG+TGG - chr8_2:61733333-61733352 None:intergenic 55.0%
GTCTTGGGCAGCAAACACAC+AGG + chr8_2:61734002-61734021 Msa1259900:CDS 55.0%
AACGGGAAATCACGGCCAGA+AGG + chr8_2:61734625-61734644 Msa1259900:CDS 55.0%
ACGGGAAATCACGGCCAGAA+GGG + chr8_2:61734626-61734645 Msa1259900:CDS 55.0%
GAAGATGAGGCTGCTGAACC+AGG - chr8_2:61734847-61734866 None:intergenic 55.0%
GGCCTGATGCACAGAAGATG+AGG - chr8_2:61734860-61734879 None:intergenic 55.0%
CCGGCCACGGTTAAACTTTG+TGG + chr8_2:61735068-61735087 Msa1259900:CDS 55.0%
AGAGCCGCTACCAGATTCTG+AGG - chr8_2:61735157-61735176 None:intergenic 55.0%
TGGCAAAACCCTGACCGGGT+CGG - chr8_2:61732817-61732836 None:intergenic 60.0%
TGTGCAGGGAGGATTTGGGC+GGG + chr8_2:61733246-61733265 Msa1259900:intron 60.0%
ACAGCCACCGCCTGAACCTA+AGG + chr8_2:61733326-61733345 Msa1259900:CDS 60.0%
CAGCCACCGCCTGAACCTAA+GGG + chr8_2:61733327-61733346 Msa1259900:CDS 60.0%
CGGGAAATCACGGCCAGAAG+GGG + chr8_2:61734627-61734646 Msa1259900:CDS 60.0%
GGGAAATCACGGCCAGAAGG+GGG + chr8_2:61734628-61734647 Msa1259900:CDS 60.0%
ACGGCCAGAAGGGGGTTTGT+TGG + chr8_2:61734636-61734655 Msa1259900:CDS 60.0%
!! TTGATAGTGCTGGCCGGCCA+CGG + chr8_2:61735055-61735074 Msa1259900:CDS 60.0%
!! CTGGTAGCGGCTCTGATTGG+AGG + chr8_2:61735163-61735182 Msa1259900:CDS 60.0%
AAACCCTGACCGGGTCGGGT+CGG - chr8_2:61732812-61732831 None:intergenic 65.0%
GGCAAAACCCTGACCGGGTC+GGG - chr8_2:61732816-61732835 None:intergenic 65.0%
ACCACCGTTCCGACCCGACC+CGG + chr8_2:61732800-61732819 Msa1259900:CDS 70.0%
CTGACCGGGTCGGGTCGGAA+CGG - chr8_2:61732807-61732826 None:intergenic 70.0%
GTTCCGACCCGACCCGGTCA+GGG + chr8_2:61732806-61732825 Msa1259900:CDS 70.0%
ACCGGGTCGGGTCGGAACGG+TGG - chr8_2:61732804-61732823 None:intergenic 75.0%
CGTTCCGACCCGACCCGGTC+AGG + chr8_2:61732805-61732824 Msa1259900:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 61732598 61735751 61732598 ID=Msa1259900;Name=Msa1259900
chr8_2 mRNA 61732598 61735751 61732598 ID=Msa1259900-mRNA-1;Parent=Msa1259900;Name=Msa1259900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=145|1|1|1|1|1|6|183|492
chr8_2 exon 61732598 61733031 61732598 ID=Msa1259900-mRNA-1:exon:19479;Parent=Msa1259900-mRNA-1
chr8_2 exon 61733253 61733410 61733253 ID=Msa1259900-mRNA-1:exon:19480;Parent=Msa1259900-mRNA-1
chr8_2 exon 61733977 61734023 61733977 ID=Msa1259900-mRNA-1:exon:19481;Parent=Msa1259900-mRNA-1
chr8_2 exon 61734114 61734177 61734114 ID=Msa1259900-mRNA-1:exon:19482;Parent=Msa1259900-mRNA-1
chr8_2 exon 61734553 61735238 61734553 ID=Msa1259900-mRNA-1:exon:19483;Parent=Msa1259900-mRNA-1
chr8_2 exon 61735334 61735751 61735334 ID=Msa1259900-mRNA-1:exon:19484;Parent=Msa1259900-mRNA-1
chr8_2 five_prime_UTR 61732598 61732742 61732598 ID=Msa1259900-mRNA-1:five_prime_utr;Parent=Msa1259900-mRNA-1
chr8_2 CDS 61732743 61733031 61732743 ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1
chr8_2 CDS 61733253 61733410 61733253 ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1
chr8_2 CDS 61733977 61734023 61733977 ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1
chr8_2 CDS 61734114 61734177 61734114 ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1
chr8_2 CDS 61734553 61735238 61734553 ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1
chr8_2 CDS 61735334 61735568 61735334 ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1
chr8_2 three_prime_UTR 61735569 61735751 61735569 ID=Msa1259900-mRNA-1:three_prime_utr;Parent=Msa1259900-mRNA-1
Gene Sequence

>Msa1259900

ATGGGTTCTCTTCCTCTCAGCGATGATCGATCAGAAATTGTATTCTTCGACGTAGAAACCACCGTTCCGACCCGACCCGGTCAGGGTTTTGCCATTTTGGAATTCGGAGCCATTCTTGTTTGTCCAAGGAAGTTGACGGAGCTTCGAAACTACTCAACTTTGGTCCGACCCTCCGAACTTTCACTCATCACTCCGTTATCGGAACGATGTAACGGAATCAACGCTGAAGCTGTTTCCAACGCTCCTACCTTTGCTGATATTGCTCACGCCGTCTATGACCTTCTTCACGGGAGGATTTGGGCGGGTCATAATATCATAAGATTTGATTGCGTTCGAATTAGAGATGCATTTGCTGCGATTAAACAGCCACCGCCTGAACCTAAGGGTTTGATCGACTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCTACCTATTTTGGTCTTGGGCAGCAAACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTTCCAGATATATTCACTGAAAATTGTTGGGTTTCACCAAATGCTGTTACAAGAAGTCGCAGTAACGGGAAATCACGGCCAGAAGGGGGTTTGTTGGTATTATCTCCTGAAACTGAAACTCAAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAGCACAGAAATCGCTATTTCAAATGCTGCAGATACCTTTAGCTTCCGTGAGCTTCAAAACGAAATTAATAGAGAATCCGTTAGGACAGATGTAGCCATGGATGAAAAATCCATACAATATTCACCTGGTTCAGCAGCCTCATCTTCTGTGCATCAGGCCGGCAGCAGCTCTATTGCTGTTTTAGAGCCCGAAAAAATATCAATGTCTTCTATTGATGCATCTCTTGTTCCATCTTATTATGGCAGTCAAAGGATAGAATTACATCATGAAGGTTTCCCATTTCAGCTTCATTGTTCTGGTTTGAAAGTGCGGTTTGGAATAAGCACAAAGTTTGTTGATAGTGCTGGCCGGCCACGGTTAAACTTTGTGGTTGATCCATCACCAAGTTTATGTAATGTTCTTGATGCATGTGACAATGTTGCACGCAAGTTATCCTCAGAATCTGGTAGCGGCTCTGATTGGAGGCCAGTTGTTATTAGGAAAGAAGGCTTCTTCAACTATCCTACTATCAGATTGCATATACCTACAGCAGTATGTGAAGAGATTGCCATTTACGCAACAGAAATATATCAAAAAGAATCATCTGGATTTGTGCAAAGGCTTCTCTTCTGCAAGTTCGACGCTGCTGAACTTGATTCCTTGTTCAAGCCTGGGACTTTTGTTGATGCAGTCTTTTCGTTAGATCTGTATGACTATCATCAGAATGCAGGGATTAAATTGGTTGCCAAGAAATTGACCATTCATTGCAACTAG

Protein sequence

>Msa1259900

MGSLPLSDDRSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPSELSLITPLSERCNGINAEAVSNAPTFADIAHAVYDLLHGRIWAGHNIIRFDCVRIRDAFAAIKQPPPEPKGLIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLLVLSPETETQDKNHPILSLATSSTEIAISNAADTFSFRELQNEINRESVRTDVAMDEKSIQYSPGSAASSSVHQAGSSSIAVLEPEKISMSSIDASLVPSYYGSQRIELHHEGFPFQLHCSGLKVRFGISTKFVDSAGRPRLNFVVDPSPSLCNVLDACDNVARKLSSESGSGSDWRPVVIRKEGFFNYPTIRLHIPTAVCEEIAIYATEIYQKESSGFVQRLLFCKFDAAELDSLFKPGTFVDAVFSLDLYDYHQNAGIKLVAKKLTIHCN*