Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1259900 | XP_013457920.1 | 96.951 | 492 | 15 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1259900 | sp|Q0V842|NEN2_ARATH | 56.914 | 499 | 191 | 7 | 1 | 490 | 4 | 487 | 0.0 | 535 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1259900 | A0A072URH4 | 96.951 | 492 | 15 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1212180 | Msa1259900 | 0.883874 | 3.099434e-71 | -8.615850e-47 |
Msa1212260 | Msa1259900 | 0.987616 | 6.635328e-171 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1259900 | MtrunA17_Chr4g0061011 | 96.951 | 492 | 15 | 0 | 1 | 492 | 1 | 492 | 0.0 | 989 |
Msa1259900 | MtrunA17_Chr8g0382661 | 62.621 | 206 | 74 | 1 | 12 | 214 | 16 | 221 | 7.61e-88 | 270 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1259900 | AT5G61390.1 | 56.914 | 499 | 191 | 7 | 1 | 490 | 4 | 487 | 0.0 | 535 |
Msa1259900 | AT5G07710.1 | 55.967 | 486 | 189 | 7 | 8 | 490 | 4 | 467 | 1.55e-179 | 512 |
Msa1259900 | AT1G74390.1 | 53.815 | 498 | 211 | 4 | 8 | 489 | 8 | 502 | 6.49e-173 | 496 |
Msa1259900 | AT1G74390.2 | 53.815 | 498 | 211 | 4 | 8 | 489 | 8 | 502 | 6.49e-173 | 496 |
Msa1259900 | AT1G74390.3 | 47.765 | 358 | 168 | 4 | 148 | 489 | 1 | 355 | 1.59e-95 | 293 |
Msa1259900 | AT1G74390.4 | 47.472 | 356 | 168 | 4 | 150 | 489 | 1 | 353 | 9.80e-94 | 289 |
Msa1259900 | AT4G39810.1 | 62.687 | 201 | 75 | 0 | 11 | 211 | 8 | 208 | 1.07e-85 | 265 |
Find 121 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTACTCTTGCTACCTATTT+TGG | 0.169699 | 8_2:+61733980 | Msa1259900:CDS |
ATATATTTCTGTTGCGTAAA+TGG | 0.185111 | 8_2:-61735363 | None:intergenic |
TTATCTTGAGTTTCAGTTTC+AGG | 0.200693 | 8_2:-61734667 | None:intergenic |
CCATTTCAGCTTCATTGTTC+TGG | 0.219236 | 8_2:+61734997 | Msa1259900:CDS |
ATTGGAGGCCAGTTGTTATT+AGG | 0.257879 | 8_2:+61735178 | Msa1259900:CDS |
TCTCTTGTTCCATCTTATTA+TGG | 0.268745 | 8_2:+61734940 | Msa1259900:CDS |
TTCACTCATCACTCCGTTAT+CGG | 0.283917 | 8_2:+61732922 | Msa1259900:CDS |
GCAATGAATGGTCAATTTCT+TGG | 0.292445 | 8_2:-61735540 | None:intergenic |
CTGTGCAACAGTTCTATTCT+TGG | 0.303572 | 8_2:+61734156 | Msa1259900:CDS |
GTTTATCCTTGTAATCTATA+TGG | 0.307589 | 8_2:-61735736 | None:intergenic |
CCAGAACAATGAAGCTGAAA+TGG | 0.309859 | 8_2:-61734997 | None:intergenic |
TCAGAATGCAGGGATTAAAT+TGG | 0.313072 | 8_2:+61735514 | Msa1259900:CDS |
TAAGGGTTTGATCGACTCTT+TGG | 0.322291 | 8_2:+61733344 | Msa1259900:CDS |
CGACTTCTTGTAACAGCATT+TGG | 0.324821 | 8_2:-61734598 | None:intergenic |
ACAAGAATTCAGAAATGTTC+TGG | 0.353071 | 8_2:-61732699 | None:intergenic |
CGAAGCTCCGTCAACTTCCT+TGG | 0.356669 | 8_2:-61732866 | None:intergenic |
CCGGCCACGGTTAAACTTTG+TGG | 0.358516 | 8_2:+61735068 | Msa1259900:CDS |
GACCATTCATTGCAACTAGA+AGG | 0.364238 | 8_2:+61735550 | Msa1259900:exon |
CTTGATTCCTTGTTCAAGCC+TGG | 0.376675 | 8_2:+61735446 | Msa1259900:CDS |
TTGCTGCCCAAGACCAAAAT+AGG | 0.381690 | 8_2:-61733993 | None:intergenic |
CGTTCCGACCCGACCCGGTC+AGG | 0.385412 | 8_2:+61732805 | Msa1259900:CDS |
GGCAAAACCCTGACCGGGTC+GGG | 0.387039 | 8_2:-61732813 | None:intergenic |
CCGTTACATCGTTCCGATAA+CGG | 0.394839 | 8_2:-61732935 | None:intergenic |
AATGGCTCCGAATTCCAAAA+TGG | 0.397194 | 8_2:-61732834 | None:intergenic |
CGCAAGTTATCCTCAGAATC+TGG | 0.402038 | 8_2:+61735144 | Msa1259900:CDS |
TATATTCACTGAAAATTGTT+GGG | 0.410842 | 8_2:+61734570 | Msa1259900:CDS |
TTCCTTCTAGTTGCAATGAA+TGG | 0.413016 | 8_2:-61735552 | None:intergenic |
CCAGTTGTTATTAGGAAAGA+AGG | 0.415626 | 8_2:+61735186 | Msa1259900:CDS |
GAACTGTTGCACAGTATTTG+AGG | 0.416121 | 8_2:-61734147 | None:intergenic |
AGCCTCATCTTCTGTGCATC+AGG | 0.420868 | 8_2:+61734855 | Msa1259900:CDS |
TTCAGAAATGTTCTGGTACT+AGG | 0.425729 | 8_2:-61732692 | None:intergenic |
CCTTCTTTCCTAATAACAAC+TGG | 0.442874 | 8_2:-61735186 | None:intergenic |
TTACAAGAAGTCGCAGTAAC+GGG | 0.449771 | 8_2:+61734608 | Msa1259900:CDS |
CGGAGTGATGAGTGAAAGTT+CGG | 0.453505 | 8_2:-61732915 | None:intergenic |
ATATATTCACTGAAAATTGT+TGG | 0.453559 | 8_2:+61734569 | Msa1259900:CDS |
TCGATCAAACCCTTAGGTTC+AGG | 0.456957 | 8_2:-61733336 | None:intergenic |
ACTTACTGCAATCTGATAGT+AGG | 0.458699 | 8_2:-61735222 | None:intergenic |
TGCTGCTTGTTGCAAGAGAA+AGG | 0.461836 | 8_2:-61734702 | None:intergenic |
AGATTGAAGCGTAGATTAGA+TGG | 0.462446 | 8_2:+61735579 | Msa1259900:three_prime_UTR |
GCCGTCTATGACCTTCTTCA+CGG | 0.464019 | 8_2:+61733010 | Msa1259900:CDS |
CAAAATGGCAAAACCCTGAC+CGG | 0.464089 | 8_2:-61732819 | None:intergenic |
TCAGGAGCTTAGATGATGTT+CGG | 0.464792 | 8_2:+61734110 | Msa1259900:intron |
TCTATATGGAGTTGAGCATA+TGG | 0.464933 | 8_2:-61735722 | None:intergenic |
ACAGCCACCGCCTGAACCTA+AGG | 0.465007 | 8_2:+61733326 | Msa1259900:CDS |
TTGATAGTGCTGGCCGGCCA+CGG | 0.465393 | 8_2:+61735055 | Msa1259900:CDS |
AATCTGGTAGCGGCTCTGAT+TGG | 0.473924 | 8_2:+61735160 | Msa1259900:CDS |
TACTAGGAAATAAATGTACT+TGG | 0.479518 | 8_2:-61732676 | None:intergenic |
ACAAAGTTTGTTGATAGTGC+TGG | 0.479560 | 8_2:+61735045 | Msa1259900:CDS |
TCTGGTTTGAAAGTGCGGTT+TGG | 0.485291 | 8_2:+61735015 | Msa1259900:CDS |
CAGAACAATGAAGCTGAAAT+GGG | 0.488231 | 8_2:-61734996 | None:intergenic |
TATGACTATCATCAGAATGC+AGG | 0.494678 | 8_2:+61735503 | Msa1259900:CDS |
CAAAAGTTTGGAAGAAGAGC+TGG | 0.497150 | 8_2:+61733378 | Msa1259900:CDS |
TTGATTCCTTGTTCAAGCCT+GGG | 0.497172 | 8_2:+61735447 | Msa1259900:CDS |
GAAATAAATGTACTTGGCTA+AGG | 0.499314 | 8_2:-61732670 | None:intergenic |
GCTTCGAAACTACTCAACTT+TGG | 0.501482 | 8_2:+61732883 | Msa1259900:CDS |
TTGAAGCTCACGGAAGCTAA+AGG | 0.502180 | 8_2:-61734755 | None:intergenic |
ATCAGCAAAGGTAGGAGCGT+TGG | 0.504280 | 8_2:-61732978 | None:intergenic |
GAAGATGAGGCTGCTGAACC+AGG | 0.514934 | 8_2:-61734844 | None:intergenic |
AGGATAGAATTACATCATGA+AGG | 0.518374 | 8_2:+61734970 | Msa1259900:CDS |
CTTTGACTGCCATAATAAGA+TGG | 0.520227 | 8_2:-61734949 | None:intergenic |
CTGGTAGCGGCTCTGATTGG+AGG | 0.524236 | 8_2:+61735163 | Msa1259900:CDS |
GTTCCGACCCGACCCGGTCA+GGG | 0.524671 | 8_2:+61732806 | Msa1259900:CDS |
AATCATCTGGATTTGTGCAA+AGG | 0.525281 | 8_2:+61735393 | Msa1259900:CDS |
CATCTTATTATGGCAGTCAA+AGG | 0.535720 | 8_2:+61734950 | Msa1259900:CDS |
CCACAAAGTTTAACCGTGGC+CGG | 0.539578 | 8_2:-61735068 | None:intergenic |
CTTCCTTGGACAAACAAGAA+TGG | 0.541331 | 8_2:-61732852 | None:intergenic |
AAAGAGTCGATCAAACCCTT+AGG | 0.543678 | 8_2:-61733342 | None:intergenic |
CGGGAAATCACGGCCAGAAG+GGG | 0.544051 | 8_2:+61734627 | Msa1259900:CDS |
AACGGGAAATCACGGCCAGA+AGG | 0.548226 | 8_2:+61734625 | Msa1259900:CDS |
GAGCCATTCTTGTTTGTCCA+AGG | 0.549208 | 8_2:+61732849 | Msa1259900:CDS |
TCAAGAACATTACATAAACT+TGG | 0.549671 | 8_2:-61735102 | None:intergenic |
TATGAAGCGAACCGTGAAGA+AGG | 0.552205 | 8_2:-61733021 | None:intergenic |
ATTGTTCTGGTTTGAAAGTG+CGG | 0.557422 | 8_2:+61735010 | Msa1259900:CDS |
TGTTTGTCCAAGGAAGTTGA+CGG | 0.563235 | 8_2:+61732859 | Msa1259900:CDS |
CTGACCGGGTCGGGTCGGAA+CGG | 0.564383 | 8_2:-61732804 | None:intergenic |
AAATTAATAGAGAATCCGTT+AGG | 0.565242 | 8_2:+61734782 | Msa1259900:CDS |
AATCTTTGCAAGAGAAACAA+TGG | 0.568170 | 8_2:-61735636 | None:intergenic |
GTTACAAGAAGTCGCAGTAA+CGG | 0.569792 | 8_2:+61734607 | Msa1259900:CDS |
ACGGGAAATCACGGCCAGAA+GGG | 0.570522 | 8_2:+61734626 | Msa1259900:CDS |
CTTGTTGCAAGAGAAAGGAT+TGG | 0.571982 | 8_2:-61734697 | None:intergenic |
GTCGCAGTAACGGGAAATCA+CGG | 0.575047 | 8_2:+61734617 | Msa1259900:CDS |
CATGGCTACATCTGTCCTAA+CGG | 0.575326 | 8_2:-61734797 | None:intergenic |
GGTTAATCTATCAATTCTGA+TGG | 0.576569 | 8_2:-61735615 | None:intergenic |
TCATCTTCTGTGCATCAGGC+CGG | 0.578173 | 8_2:+61734859 | Msa1259900:CDS |
TTGTGCAGGGAGGATTTGGG+CGG | 0.582583 | 8_2:+61733245 | Msa1259900:intron |
AAACCCTTAGGTTCAGGCGG+TGG | 0.584405 | 8_2:-61733330 | None:intergenic |
ACCGGGTCGGGTCGGAACGG+TGG | 0.585225 | 8_2:-61732801 | None:intergenic |
ACATTACATAAACTTGGTGA+TGG | 0.585353 | 8_2:-61735096 | None:intergenic |
TCAACTCCATATAGATTACA+AGG | 0.590237 | 8_2:+61735730 | Msa1259900:three_prime_UTR |
TGAGTGAAAGTTCGGAGGGT+CGG | 0.593095 | 8_2:-61732907 | None:intergenic |
TGGCAAAACCCTGACCGGGT+CGG | 0.593613 | 8_2:-61732814 | None:intergenic |
ATCTCTTCACATACTGCTGT+AGG | 0.599633 | 8_2:-61735338 | None:intergenic |
ATGACTATCATCAGAATGCA+GGG | 0.600817 | 8_2:+61735504 | Msa1259900:CDS |
TTATCCTCAGAATCTGGTAG+CGG | 0.601161 | 8_2:+61735150 | Msa1259900:CDS |
TGAACCAGGTGAATATTGTA+TGG | 0.606211 | 8_2:-61734830 | None:intergenic |
ACTGCATCAACAAAAGTCCC+AGG | 0.606468 | 8_2:-61735464 | None:intergenic |
AAACCCTGACCGGGTCGGGT+CGG | 0.607699 | 8_2:-61732809 | None:intergenic |
AAGAAGAGCTGGTAACATGA+AGG | 0.607820 | 8_2:+61733389 | Msa1259900:CDS |
AAAAGTCCCAGGCTTGAACA+AGG | 0.615128 | 8_2:-61735453 | None:intergenic |
GTGATGAGTGAAAGTTCGGA+GGG | 0.615353 | 8_2:-61732911 | None:intergenic |
CGTTAGGACAGATGTAGCCA+TGG | 0.617479 | 8_2:+61734798 | Msa1259900:CDS |
AACAGCAATAGAGCTGCTGC+CGG | 0.617637 | 8_2:-61734878 | None:intergenic |
GGGAAATCACGGCCAGAAGG+GGG | 0.629891 | 8_2:+61734628 | Msa1259900:CDS |
AGAGCCGCTACCAGATTCTG+AGG | 0.631582 | 8_2:-61735154 | None:intergenic |
TGTGCAGGGAGGATTTGGGC+GGG | 0.632991 | 8_2:+61733246 | Msa1259900:intron |
CAGCCACCGCCTGAACCTAA+GGG | 0.635006 | 8_2:+61733327 | Msa1259900:CDS |
CCGTTATCGGAACGATGTAA+CGG | 0.636088 | 8_2:+61732935 | Msa1259900:CDS |
GGCGTGAGCAATATCAGCAA+AGG | 0.636460 | 8_2:-61732990 | None:intergenic |
GGCCTGATGCACAGAAGATG+AGG | 0.637574 | 8_2:-61734857 | None:intergenic |
AAAATGGCAAAACCCTGACC+GGG | 0.637699 | 8_2:-61732818 | None:intergenic |
AGTTTGTTGATAGTGCTGGC+CGG | 0.638222 | 8_2:+61735049 | Msa1259900:CDS |
TGAGCAATATCAGCAAAGGT+AGG | 0.643892 | 8_2:-61732986 | None:intergenic |
CTATCAATTCTGATGGCACG+AGG | 0.647718 | 8_2:-61735608 | None:intergenic |
ATCAAACCCTTAGGTTCAGG+CGG | 0.649042 | 8_2:-61733333 | None:intergenic |
AAATCCATACAATATTCACC+TGG | 0.654350 | 8_2:+61734826 | Msa1259900:CDS |
AGTGATGAGTGAAAGTTCGG+AGG | 0.655173 | 8_2:-61732912 | None:intergenic |
GTCTTGGGCAGCAAACACAC+AGG | 0.668051 | 8_2:+61734002 | Msa1259900:CDS |
ACCGTGAAGAAGGTCATAGA+CGG | 0.669934 | 8_2:-61733011 | None:intergenic |
TTTATTCATTTGTTTAAACG+CGG | 0.683638 | 8_2:-61732599 | None:intergenic |
TCTGATCGATCATCGCTGAG+AGG | 0.700110 | 8_2:-61732755 | None:intergenic |
TCAACCACAAAGTTTAACCG+TGG | 0.732512 | 8_2:-61735072 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATCTTTTCTTTTAAATGTT+AGG | + | chr8_2:61733065-61733084 | Msa1259900:intron | 15.0% |
!!! | ATCTTTTCTTTTAAATGTTA+GGG | + | chr8_2:61733066-61733085 | Msa1259900:intron | 15.0% |
!!! | CTCTTTAAAATTAATTAGAA+TGG | - | chr8_2:61734293-61734312 | None:intergenic | 15.0% |
!! | TTTATTCATTTGTTTAAACG+CGG | - | chr8_2:61732602-61732621 | None:intergenic | 20.0% |
!! | TATATGCTTATTACATTCAT+AGG | + | chr8_2:61733438-61733457 | Msa1259900:intron | 20.0% |
!! | ATATGCTTATTACATTCATA+GGG | + | chr8_2:61733439-61733458 | Msa1259900:intron | 20.0% |
!! | TATCATAAGCAAAAAGAAAA+TGG | - | chr8_2:61734079-61734098 | None:intergenic | 20.0% |
!!! | TTTTAAAGAGAAAAAAAGTG+TGG | + | chr8_2:61734303-61734322 | Msa1259900:intron | 20.0% |
!! | ATATATTCACTGAAAATTGT+TGG | + | chr8_2:61734569-61734588 | Msa1259900:CDS | 20.0% |
!! | TATATTCACTGAAAATTGTT+GGG | + | chr8_2:61734570-61734589 | Msa1259900:CDS | 20.0% |
!!! | AGAAGACATTGATATTTTTT+CGG | - | chr8_2:61734911-61734930 | None:intergenic | 20.0% |
!! | ATATATCAAAAAGAATCATC+TGG | + | chr8_2:61735380-61735399 | Msa1259900:CDS | 20.0% |
!!! | GTTCACATTTATAAATTTTC+TGG | + | chr8_2:61735686-61735705 | Msa1259900:three_prime_UTR | 20.0% |
! | TACTAGGAAATAAATGTACT+TGG | - | chr8_2:61732679-61732698 | None:intergenic | 25.0% |
! | TGCTTTCAATTTCGAAAAAT+GGG | + | chr8_2:61732725-61732744 | Msa1259900:exon | 25.0% |
! | TTGCAAATTATTACATTTGC+AGG | + | chr8_2:61733158-61733177 | Msa1259900:intron | 25.0% |
! | AATGCTTTGTAGGTTAATTA+GGG | + | chr8_2:61733206-61733225 | Msa1259900:intron | 25.0% |
! | ATGAATCATTTCTACAACAA+TGG | - | chr8_2:61734226-61734245 | None:intergenic | 25.0% |
! | TAGAATACTAAATATCTGGA+AGG | - | chr8_2:61734478-61734497 | None:intergenic | 25.0% |
! | TCCAGATATTTAGTATTCTA+TGG | + | chr8_2:61734478-61734497 | Msa1259900:intron | 25.0% |
!! | ATTATCATCATTTTCACCAT+AGG | - | chr8_2:61734517-61734536 | None:intergenic | 25.0% |
!! | CAATTTTCAGTGAATATATC+TGG | - | chr8_2:61734568-61734587 | None:intergenic | 25.0% |
! | AAATTAATAGAGAATCCGTT+AGG | + | chr8_2:61734782-61734801 | Msa1259900:CDS | 25.0% |
!!! | GAAGACATTGATATTTTTTC+GGG | - | chr8_2:61734910-61734929 | None:intergenic | 25.0% |
! | TCAAGAACATTACATAAACT+TGG | - | chr8_2:61735105-61735124 | None:intergenic | 25.0% |
!! | ATATATTTCTGTTGCGTAAA+TGG | - | chr8_2:61735366-61735385 | None:intergenic | 25.0% |
!!! | ATAAATTTTCTGGTTACTCA+TGG | + | chr8_2:61735696-61735715 | Msa1259900:three_prime_UTR | 25.0% |
GAAATAAATGTACTTGGCTA+AGG | - | chr8_2:61732673-61732692 | None:intergenic | 30.0% | |
ACAAGAATTCAGAAATGTTC+TGG | - | chr8_2:61732702-61732721 | None:intergenic | 30.0% | |
CTGCTTTCAATTTCGAAAAA+TGG | + | chr8_2:61732724-61732743 | Msa1259900:exon | 30.0% | |
! | TATTACATTTGCAGGTTTTG+AGG | + | chr8_2:61733166-61733185 | Msa1259900:intron | 30.0% |
CAATGCTTTGTAGGTTAATT+AGG | + | chr8_2:61733205-61733224 | Msa1259900:intron | 30.0% | |
TGTAGGTTAATTAGGGTTAA+TGG | + | chr8_2:61733213-61733232 | Msa1259900:intron | 30.0% | |
!!! | GTTTTGTTGACTCAAAAGTT+TGG | + | chr8_2:61733366-61733385 | Msa1259900:CDS | 30.0% |
AAAGTTATTCCAAACAGAAG+TGG | + | chr8_2:61733641-61733660 | Msa1259900:intron | 30.0% | |
! | CAATTTTATCCACTTCTGTT+TGG | - | chr8_2:61733653-61733672 | None:intergenic | 30.0% |
CAATCACGTAATCAATTCAT+TGG | + | chr8_2:61733684-61733703 | Msa1259900:intron | 30.0% | |
!!! | ACTAGAGCATTACACTTTTT+TGG | + | chr8_2:61733886-61733905 | Msa1259900:intron | 30.0% |
!!! | CTAGAGCATTACACTTTTTT+GGG | + | chr8_2:61733887-61733906 | Msa1259900:intron | 30.0% |
!!! | TTACACTTTTTTGGGAATGA+AGG | + | chr8_2:61733895-61733914 | Msa1259900:intron | 30.0% |
TATGATATAGTTGCATCTTC+AGG | + | chr8_2:61734092-61734111 | Msa1259900:intron | 30.0% | |
TTGTTTGCAAAGACTTAACA+AGG | - | chr8_2:61734195-61734214 | None:intergenic | 30.0% | |
GCCATAGAATACTAAATATC+TGG | - | chr8_2:61734482-61734501 | None:intergenic | 30.0% | |
GATAATATCTCTGTCTTTAC+AGG | + | chr8_2:61734531-61734550 | Msa1259900:intron | 30.0% | |
TTATCTTGAGTTTCAGTTTC+AGG | - | chr8_2:61734670-61734689 | None:intergenic | 30.0% | |
!!! | TAATTTCGTTTTGAAGCTCA+CGG | - | chr8_2:61734768-61734787 | None:intergenic | 30.0% |
! | TTGTATGGATTTTTCATCCA+TGG | - | chr8_2:61734818-61734837 | None:intergenic | 30.0% |
AAATCCATACAATATTCACC+TGG | + | chr8_2:61734826-61734845 | Msa1259900:CDS | 30.0% | |
TCTCTTGTTCCATCTTATTA+TGG | + | chr8_2:61734940-61734959 | Msa1259900:CDS | 30.0% | |
AGGATAGAATTACATCATGA+AGG | + | chr8_2:61734970-61734989 | Msa1259900:CDS | 30.0% | |
! | ACATTACATAAACTTGGTGA+TGG | - | chr8_2:61735099-61735118 | None:intergenic | 30.0% |
GGTTAATCTATCAATTCTGA+TGG | - | chr8_2:61735618-61735637 | None:intergenic | 30.0% | |
AATCTTTGCAAGAGAAACAA+TGG | - | chr8_2:61735639-61735658 | None:intergenic | 30.0% | |
TTCAGAAATGTTCTGGTACT+AGG | - | chr8_2:61732695-61732714 | None:intergenic | 35.0% | |
!!! | GGTTTTGCCATTTTGGAATT+CGG | + | chr8_2:61732827-61732846 | Msa1259900:CDS | 35.0% |
TGTCTTTGTCAATGCTTTGT+AGG | + | chr8_2:61733196-61733215 | Msa1259900:intron | 35.0% | |
AGGTTAATTAGGGTTAATGG+TGG | + | chr8_2:61733216-61733235 | Msa1259900:intron | 35.0% | |
GTAATCGAAGAGAAAATGAG+AGG | + | chr8_2:61733536-61733555 | Msa1259900:intron | 35.0% | |
GAATTGATTACGTGATTGCA+GGG | - | chr8_2:61733682-61733701 | None:intergenic | 35.0% | |
TGAATTGATTACGTGATTGC+AGG | - | chr8_2:61733683-61733702 | None:intergenic | 35.0% | |
! | ATCAATTCATTGGTGACCAT+TGG | + | chr8_2:61733694-61733713 | Msa1259900:intron | 35.0% |
TAAATACCAAGCCTGAAATC+TGG | + | chr8_2:61733768-61733787 | Msa1259900:intron | 35.0% | |
TGTACTGAATGCTTGAATTC+CGG | + | chr8_2:61733822-61733841 | Msa1259900:intron | 35.0% | |
ACGTTTGGAAGGGATAAATT+TGG | - | chr8_2:61733852-61733871 | None:intergenic | 35.0% | |
! | ATGCTCTAGTTTGCATTCAA+GGG | - | chr8_2:61733876-61733895 | None:intergenic | 35.0% |
! | AATGCTCTAGTTTGCATTCA+AGG | - | chr8_2:61733877-61733896 | None:intergenic | 35.0% |
TTTATGTTGTTCACTGCAGA+TGG | + | chr8_2:61733958-61733977 | Msa1259900:intron | 35.0% | |
!!! | TTGCTACCTATTTTGGTCTT+GGG | + | chr8_2:61733987-61734006 | Msa1259900:CDS | 35.0% |
TTCTAAACCTGATGCTTGTT+TGG | + | chr8_2:61734337-61734356 | Msa1259900:intron | 35.0% | |
TGAACCAGGTGAATATTGTA+TGG | - | chr8_2:61734833-61734852 | None:intergenic | 35.0% | |
CTTTGACTGCCATAATAAGA+TGG | - | chr8_2:61734952-61734971 | None:intergenic | 35.0% | |
CATCTTATTATGGCAGTCAA+AGG | + | chr8_2:61734950-61734969 | Msa1259900:CDS | 35.0% | |
CAGAACAATGAAGCTGAAAT+GGG | - | chr8_2:61734999-61735018 | None:intergenic | 35.0% | |
!! | ATTGTTCTGGTTTGAAAGTG+CGG | + | chr8_2:61735010-61735029 | Msa1259900:CDS | 35.0% |
!! | ACAAAGTTTGTTGATAGTGC+TGG | + | chr8_2:61735045-61735064 | Msa1259900:CDS | 35.0% |
CCTTCTTTCCTAATAACAAC+TGG | - | chr8_2:61735189-61735208 | None:intergenic | 35.0% | |
! | CCAGTTGTTATTAGGAAAGA+AGG | + | chr8_2:61735186-61735205 | Msa1259900:CDS | 35.0% |
ACTTACTGCAATCTGATAGT+AGG | - | chr8_2:61735225-61735244 | None:intergenic | 35.0% | |
AATCATCTGGATTTGTGCAA+AGG | + | chr8_2:61735393-61735412 | Msa1259900:CDS | 35.0% | |
TATGACTATCATCAGAATGC+AGG | + | chr8_2:61735503-61735522 | Msa1259900:CDS | 35.0% | |
ATGACTATCATCAGAATGCA+GGG | + | chr8_2:61735504-61735523 | Msa1259900:CDS | 35.0% | |
TCAGAATGCAGGGATTAAAT+TGG | + | chr8_2:61735514-61735533 | Msa1259900:CDS | 35.0% | |
GCAATGAATGGTCAATTTCT+TGG | - | chr8_2:61735543-61735562 | None:intergenic | 35.0% | |
! | TTCCTTCTAGTTGCAATGAA+TGG | - | chr8_2:61735555-61735574 | None:intergenic | 35.0% |
AGATTGAAGCGTAGATTAGA+TGG | + | chr8_2:61735579-61735598 | Msa1259900:three_prime_UTR | 35.0% | |
TCTATATGGAGTTGAGCATA+TGG | - | chr8_2:61735725-61735744 | None:intergenic | 35.0% | |
AATGGCTCCGAATTCCAAAA+TGG | - | chr8_2:61732837-61732856 | None:intergenic | 40.0% | |
CTTCCTTGGACAAACAAGAA+TGG | - | chr8_2:61732855-61732874 | None:intergenic | 40.0% | |
TGTTTGTCCAAGGAAGTTGA+CGG | + | chr8_2:61732859-61732878 | Msa1259900:CDS | 40.0% | |
GCTTCGAAACTACTCAACTT+TGG | + | chr8_2:61732883-61732902 | Msa1259900:CDS | 40.0% | |
TTCACTCATCACTCCGTTAT+CGG | + | chr8_2:61732922-61732941 | Msa1259900:CDS | 40.0% | |
TGAGCAATATCAGCAAAGGT+AGG | - | chr8_2:61732989-61733008 | None:intergenic | 40.0% | |
TGTAATCACATGTCAGACGT+TGG | - | chr8_2:61733122-61733141 | None:intergenic | 40.0% | |
!! | AATGGTGGTGAATTTTGTGC+AGG | + | chr8_2:61733231-61733250 | Msa1259900:intron | 40.0% |
!! | ATGGTGGTGAATTTTGTGCA+GGG | + | chr8_2:61733232-61733251 | Msa1259900:intron | 40.0% |
! | AATTTTGTGCAGGGAGGATT+TGG | + | chr8_2:61733241-61733260 | Msa1259900:intron | 40.0% |
! | ATTTTGTGCAGGGAGGATTT+GGG | + | chr8_2:61733242-61733261 | Msa1259900:intron | 40.0% |
AAAGAGTCGATCAAACCCTT+AGG | - | chr8_2:61733345-61733364 | None:intergenic | 40.0% | |
! | TAAGGGTTTGATCGACTCTT+TGG | + | chr8_2:61733344-61733363 | Msa1259900:CDS | 40.0% |
CAAAAGTTTGGAAGAAGAGC+TGG | + | chr8_2:61733378-61733397 | Msa1259900:CDS | 40.0% | |
AAGAAGAGCTGGTAACATGA+AGG | + | chr8_2:61733389-61733408 | Msa1259900:CDS | 40.0% | |
! | TCATTGGTGACCATTGGATT+CGG | + | chr8_2:61733700-61733719 | Msa1259900:intron | 40.0% |
ACTATCTGATCCGAATCCAA+TGG | - | chr8_2:61733713-61733732 | None:intergenic | 40.0% | |
CCATCTGATCCTTGATTCAA+CGG | + | chr8_2:61733792-61733811 | Msa1259900:intron | 40.0% | |
GTACTGAATGCTTGAATTCC+GGG | + | chr8_2:61733823-61733842 | Msa1259900:intron | 40.0% | |
AAGGGATAAATTTGGACACC+CGG | - | chr8_2:61733844-61733863 | None:intergenic | 40.0% | |
ATTCAAGGGAACGTTTGGAA+GGG | - | chr8_2:61733862-61733881 | None:intergenic | 40.0% | |
TTTGCATTCAAGGGAACGTT+TGG | - | chr8_2:61733867-61733886 | None:intergenic | 40.0% | |
! | GCTACTCTTGCTACCTATTT+TGG | + | chr8_2:61733980-61733999 | Msa1259900:CDS | 40.0% |
!!! | CTTGCTACCTATTTTGGTCT+TGG | + | chr8_2:61733986-61734005 | Msa1259900:CDS | 40.0% |
AGCAAACACACAGGTAATTG+TGG | + | chr8_2:61734011-61734030 | Msa1259900:intron | 40.0% | |
! | AGCAGATGACTAGAAAGCAT+GGG | - | chr8_2:61734052-61734071 | None:intergenic | 40.0% |
TAGCAGATGACTAGAAAGCA+TGG | - | chr8_2:61734053-61734072 | None:intergenic | 40.0% | |
TCAGGAGCTTAGATGATGTT+CGG | + | chr8_2:61734110-61734129 | Msa1259900:intron | 40.0% | |
GAACTGTTGCACAGTATTTG+AGG | - | chr8_2:61734150-61734169 | None:intergenic | 40.0% | |
CTGTGCAACAGTTCTATTCT+TGG | + | chr8_2:61734156-61734175 | Msa1259900:CDS | 40.0% | |
TGTTCTACCAAACAAGCATC+AGG | - | chr8_2:61734347-61734366 | None:intergenic | 40.0% | |
CGACTTCTTGTAACAGCATT+TGG | - | chr8_2:61734601-61734620 | None:intergenic | 40.0% | |
GTTACAAGAAGTCGCAGTAA+CGG | + | chr8_2:61734607-61734626 | Msa1259900:CDS | 40.0% | |
TTACAAGAAGTCGCAGTAAC+GGG | + | chr8_2:61734608-61734627 | Msa1259900:CDS | 40.0% | |
CTTGTTGCAAGAGAAAGGAT+TGG | - | chr8_2:61734700-61734719 | None:intergenic | 40.0% | |
CCAGAACAATGAAGCTGAAA+TGG | - | chr8_2:61735000-61735019 | None:intergenic | 40.0% | |
CCATTTCAGCTTCATTGTTC+TGG | + | chr8_2:61734997-61735016 | Msa1259900:CDS | 40.0% | |
TCAACCACAAAGTTTAACCG+TGG | - | chr8_2:61735075-61735094 | None:intergenic | 40.0% | |
TTATCCTCAGAATCTGGTAG+CGG | + | chr8_2:61735150-61735169 | Msa1259900:CDS | 40.0% | |
! | ATTGGAGGCCAGTTGTTATT+AGG | + | chr8_2:61735178-61735197 | Msa1259900:CDS | 40.0% |
ATCTCTTCACATACTGCTGT+AGG | - | chr8_2:61735341-61735360 | None:intergenic | 40.0% | |
TTGATTCCTTGTTCAAGCCT+GGG | + | chr8_2:61735447-61735466 | Msa1259900:CDS | 40.0% | |
GACCATTCATTGCAACTAGA+AGG | + | chr8_2:61735550-61735569 | Msa1259900:exon | 40.0% | |
AAAATGGCAAAACCCTGACC+GGG | - | chr8_2:61732821-61732840 | None:intergenic | 45.0% | |
CAAAATGGCAAAACCCTGAC+CGG | - | chr8_2:61732822-61732841 | None:intergenic | 45.0% | |
! | GAGCCATTCTTGTTTGTCCA+AGG | + | chr8_2:61732849-61732868 | Msa1259900:CDS | 45.0% |
GTGATGAGTGAAAGTTCGGA+GGG | - | chr8_2:61732914-61732933 | None:intergenic | 45.0% | |
AGTGATGAGTGAAAGTTCGG+AGG | - | chr8_2:61732915-61732934 | None:intergenic | 45.0% | |
CGGAGTGATGAGTGAAAGTT+CGG | - | chr8_2:61732918-61732937 | None:intergenic | 45.0% | |
CCGTTACATCGTTCCGATAA+CGG | - | chr8_2:61732938-61732957 | None:intergenic | 45.0% | |
CCGTTATCGGAACGATGTAA+CGG | + | chr8_2:61732935-61732954 | Msa1259900:CDS | 45.0% | |
ACCGTGAAGAAGGTCATAGA+CGG | - | chr8_2:61733014-61733033 | None:intergenic | 45.0% | |
TATGAAGCGAACCGTGAAGA+AGG | - | chr8_2:61733024-61733043 | None:intergenic | 45.0% | |
TGTAGCGTAGCACCTTCTAA+TGG | + | chr8_2:61733093-61733112 | Msa1259900:intron | 45.0% | |
!! | AGACGTTGGCTTCCATTAGA+AGG | - | chr8_2:61733108-61733127 | None:intergenic | 45.0% |
ATCAAACCCTTAGGTTCAGG+CGG | - | chr8_2:61733336-61733355 | None:intergenic | 45.0% | |
TCGATCAAACCCTTAGGTTC+AGG | - | chr8_2:61733339-61733358 | None:intergenic | 45.0% | |
GATCAGATGGTCCAGATTTC+AGG | - | chr8_2:61733782-61733801 | None:intergenic | 45.0% | |
CCGTTGAATCAAGGATCAGA+TGG | - | chr8_2:61733795-61733814 | None:intergenic | 45.0% | |
CATCAGTGACCGTTGAATCA+AGG | - | chr8_2:61733804-61733823 | None:intergenic | 45.0% | |
CATTCAAGGGAACGTTTGGA+AGG | - | chr8_2:61733863-61733882 | None:intergenic | 45.0% | |
TTGCTGCCCAAGACCAAAAT+AGG | - | chr8_2:61733996-61734015 | None:intergenic | 45.0% | |
TGGCACTAGTTGAGAACCTA+TGG | + | chr8_2:61734498-61734517 | Msa1259900:intron | 45.0% | |
AATACCAACAAACCCCCTTC+TGG | - | chr8_2:61734643-61734662 | None:intergenic | 45.0% | |
! | TGCTGCTTGTTGCAAGAGAA+AGG | - | chr8_2:61734705-61734724 | None:intergenic | 45.0% |
TTGAAGCTCACGGAAGCTAA+AGG | - | chr8_2:61734758-61734777 | None:intergenic | 45.0% | |
CATGGCTACATCTGTCCTAA+CGG | - | chr8_2:61734800-61734819 | None:intergenic | 45.0% | |
! | TCTGGTTTGAAAGTGCGGTT+TGG | + | chr8_2:61735015-61735034 | Msa1259900:CDS | 45.0% |
!! | AGTTTGTTGATAGTGCTGGC+CGG | + | chr8_2:61735049-61735068 | Msa1259900:CDS | 45.0% |
CGCAAGTTATCCTCAGAATC+TGG | + | chr8_2:61735144-61735163 | Msa1259900:CDS | 45.0% | |
CTTGATTCCTTGTTCAAGCC+TGG | + | chr8_2:61735446-61735465 | Msa1259900:CDS | 45.0% | |
AAAAGTCCCAGGCTTGAACA+AGG | - | chr8_2:61735456-61735475 | None:intergenic | 45.0% | |
ACTGCATCAACAAAAGTCCC+AGG | - | chr8_2:61735467-61735486 | None:intergenic | 45.0% | |
CTATCAATTCTGATGGCACG+AGG | - | chr8_2:61735611-61735630 | None:intergenic | 45.0% | |
TCTGATCGATCATCGCTGAG+AGG | - | chr8_2:61732758-61732777 | None:intergenic | 50.0% | |
!! | CGGTCAGGGTTTTGCCATTT+TGG | + | chr8_2:61732820-61732839 | Msa1259900:CDS | 50.0% |
TGAGTGAAAGTTCGGAGGGT+CGG | - | chr8_2:61732910-61732929 | None:intergenic | 50.0% | |
! | ATCAGCAAAGGTAGGAGCGT+TGG | - | chr8_2:61732981-61733000 | None:intergenic | 50.0% |
GGCGTGAGCAATATCAGCAA+AGG | - | chr8_2:61732993-61733012 | None:intergenic | 50.0% | |
GCCGTCTATGACCTTCTTCA+CGG | + | chr8_2:61733010-61733029 | Msa1259900:CDS | 50.0% | |
! | GTGGTGAATTTTGTGCAGGG+AGG | + | chr8_2:61733235-61733254 | Msa1259900:intron | 50.0% |
GATGGTCCAGATTTCAGGCT+TGG | - | chr8_2:61733777-61733796 | None:intergenic | 50.0% | |
! | GTCGCAGTAACGGGAAATCA+CGG | + | chr8_2:61734617-61734636 | Msa1259900:CDS | 50.0% |
CGTTAGGACAGATGTAGCCA+TGG | + | chr8_2:61734798-61734817 | Msa1259900:CDS | 50.0% | |
AGCCTCATCTTCTGTGCATC+AGG | + | chr8_2:61734855-61734874 | Msa1259900:CDS | 50.0% | |
TCATCTTCTGTGCATCAGGC+CGG | + | chr8_2:61734859-61734878 | Msa1259900:CDS | 50.0% | |
AACAGCAATAGAGCTGCTGC+CGG | - | chr8_2:61734881-61734900 | None:intergenic | 50.0% | |
CCACAAAGTTTAACCGTGGC+CGG | - | chr8_2:61735071-61735090 | None:intergenic | 50.0% | |
!! | AATCTGGTAGCGGCTCTGAT+TGG | + | chr8_2:61735160-61735179 | Msa1259900:CDS | 50.0% |
GTGTGTGCGTGCATGTGTAT+AGG | - | chr8_2:61735254-61735273 | None:intergenic | 50.0% | |
CGAAGCTCCGTCAACTTCCT+TGG | - | chr8_2:61732869-61732888 | None:intergenic | 55.0% | |
TTGTGCAGGGAGGATTTGGG+CGG | + | chr8_2:61733245-61733264 | Msa1259900:intron | 55.0% | |
AAACCCTTAGGTTCAGGCGG+TGG | - | chr8_2:61733333-61733352 | None:intergenic | 55.0% | |
GTCTTGGGCAGCAAACACAC+AGG | + | chr8_2:61734002-61734021 | Msa1259900:CDS | 55.0% | |
AACGGGAAATCACGGCCAGA+AGG | + | chr8_2:61734625-61734644 | Msa1259900:CDS | 55.0% | |
ACGGGAAATCACGGCCAGAA+GGG | + | chr8_2:61734626-61734645 | Msa1259900:CDS | 55.0% | |
GAAGATGAGGCTGCTGAACC+AGG | - | chr8_2:61734847-61734866 | None:intergenic | 55.0% | |
GGCCTGATGCACAGAAGATG+AGG | - | chr8_2:61734860-61734879 | None:intergenic | 55.0% | |
CCGGCCACGGTTAAACTTTG+TGG | + | chr8_2:61735068-61735087 | Msa1259900:CDS | 55.0% | |
AGAGCCGCTACCAGATTCTG+AGG | - | chr8_2:61735157-61735176 | None:intergenic | 55.0% | |
TGGCAAAACCCTGACCGGGT+CGG | - | chr8_2:61732817-61732836 | None:intergenic | 60.0% | |
TGTGCAGGGAGGATTTGGGC+GGG | + | chr8_2:61733246-61733265 | Msa1259900:intron | 60.0% | |
ACAGCCACCGCCTGAACCTA+AGG | + | chr8_2:61733326-61733345 | Msa1259900:CDS | 60.0% | |
CAGCCACCGCCTGAACCTAA+GGG | + | chr8_2:61733327-61733346 | Msa1259900:CDS | 60.0% | |
CGGGAAATCACGGCCAGAAG+GGG | + | chr8_2:61734627-61734646 | Msa1259900:CDS | 60.0% | |
GGGAAATCACGGCCAGAAGG+GGG | + | chr8_2:61734628-61734647 | Msa1259900:CDS | 60.0% | |
ACGGCCAGAAGGGGGTTTGT+TGG | + | chr8_2:61734636-61734655 | Msa1259900:CDS | 60.0% | |
!! | TTGATAGTGCTGGCCGGCCA+CGG | + | chr8_2:61735055-61735074 | Msa1259900:CDS | 60.0% |
!! | CTGGTAGCGGCTCTGATTGG+AGG | + | chr8_2:61735163-61735182 | Msa1259900:CDS | 60.0% |
AAACCCTGACCGGGTCGGGT+CGG | - | chr8_2:61732812-61732831 | None:intergenic | 65.0% | |
GGCAAAACCCTGACCGGGTC+GGG | - | chr8_2:61732816-61732835 | None:intergenic | 65.0% | |
ACCACCGTTCCGACCCGACC+CGG | + | chr8_2:61732800-61732819 | Msa1259900:CDS | 70.0% | |
CTGACCGGGTCGGGTCGGAA+CGG | - | chr8_2:61732807-61732826 | None:intergenic | 70.0% | |
GTTCCGACCCGACCCGGTCA+GGG | + | chr8_2:61732806-61732825 | Msa1259900:CDS | 70.0% | |
ACCGGGTCGGGTCGGAACGG+TGG | - | chr8_2:61732804-61732823 | None:intergenic | 75.0% | |
CGTTCCGACCCGACCCGGTC+AGG | + | chr8_2:61732805-61732824 | Msa1259900:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 61732598 | 61735751 | 61732598 | ID=Msa1259900;Name=Msa1259900 |
chr8_2 | mRNA | 61732598 | 61735751 | 61732598 | ID=Msa1259900-mRNA-1;Parent=Msa1259900;Name=Msa1259900-mRNA-1;_AED=0.12;_eAED=0.12;_QI=145|1|1|1|1|1|6|183|492 |
chr8_2 | exon | 61732598 | 61733031 | 61732598 | ID=Msa1259900-mRNA-1:exon:19479;Parent=Msa1259900-mRNA-1 |
chr8_2 | exon | 61733253 | 61733410 | 61733253 | ID=Msa1259900-mRNA-1:exon:19480;Parent=Msa1259900-mRNA-1 |
chr8_2 | exon | 61733977 | 61734023 | 61733977 | ID=Msa1259900-mRNA-1:exon:19481;Parent=Msa1259900-mRNA-1 |
chr8_2 | exon | 61734114 | 61734177 | 61734114 | ID=Msa1259900-mRNA-1:exon:19482;Parent=Msa1259900-mRNA-1 |
chr8_2 | exon | 61734553 | 61735238 | 61734553 | ID=Msa1259900-mRNA-1:exon:19483;Parent=Msa1259900-mRNA-1 |
chr8_2 | exon | 61735334 | 61735751 | 61735334 | ID=Msa1259900-mRNA-1:exon:19484;Parent=Msa1259900-mRNA-1 |
chr8_2 | five_prime_UTR | 61732598 | 61732742 | 61732598 | ID=Msa1259900-mRNA-1:five_prime_utr;Parent=Msa1259900-mRNA-1 |
chr8_2 | CDS | 61732743 | 61733031 | 61732743 | ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1 |
chr8_2 | CDS | 61733253 | 61733410 | 61733253 | ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1 |
chr8_2 | CDS | 61733977 | 61734023 | 61733977 | ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1 |
chr8_2 | CDS | 61734114 | 61734177 | 61734114 | ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1 |
chr8_2 | CDS | 61734553 | 61735238 | 61734553 | ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1 |
chr8_2 | CDS | 61735334 | 61735568 | 61735334 | ID=Msa1259900-mRNA-1:cds;Parent=Msa1259900-mRNA-1 |
chr8_2 | three_prime_UTR | 61735569 | 61735751 | 61735569 | ID=Msa1259900-mRNA-1:three_prime_utr;Parent=Msa1259900-mRNA-1 |
Gene Sequence |
Protein sequence |