AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1212180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212180 MtrunA17_Chr4g0061011 97.154 492 14 0 1 492 1 492 0.0 989
Msa1212180 MtrunA17_Chr8g0382661 62.621 206 74 1 12 214 16 221 7.37e-88 271
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1212180 AT5G61390.1 56.713 499 192 7 1 490 4 487 0.0 533
Msa1212180 AT5G07710.1 55.761 486 190 7 8 490 4 467 1.24e-178 509
Msa1212180 AT1G74390.1 53.815 498 211 4 8 489 8 502 3.55e-172 494
Msa1212180 AT1G74390.2 53.815 498 211 4 8 489 8 502 3.55e-172 494
Msa1212180 AT1G74390.3 47.765 358 168 4 148 489 1 355 8.02e-95 291
Msa1212180 AT1G74390.4 47.472 356 168 4 150 489 1 353 3.61e-93 287
Msa1212180 AT4G39810.1 62.687 201 75 0 11 211 8 208 1.15e-85 264

Find 120 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTCTTGCTACCTATTT+TGG 0.169699 8_1:+72041752 Msa1212180:CDS
ATATATTTCTGTTGCGTAAA+TGG 0.185111 8_1:-72043135 None:intergenic
TTATCTTGAGTTTCAGTTTC+AGG 0.200693 8_1:-72042439 None:intergenic
ATTGGAGGCCAGTTGTTATT+AGG 0.257879 8_1:+72042950 Msa1212180:CDS
TCTCTTGTTCCATCTTATTA+TGG 0.268745 8_1:+72042712 Msa1212180:CDS
TTCACTCATCACTCCGTTAT+CGG 0.283917 8_1:+72040677 Msa1212180:CDS
GCAATGAATGGTCAATTTCT+TGG 0.292445 8_1:-72043312 None:intergenic
GCATTTCAGCTTCATTGTTC+TGG 0.297221 8_1:+72042769 Msa1212180:CDS
CTGTGCAACAGTTCTATTCT+TGG 0.303572 8_1:+72041928 Msa1212180:CDS
GTTTATCCTTGTAATCTATA+TGG 0.307589 8_1:-72043508 None:intergenic
TCAGAATGCAGGGATTAAAT+TGG 0.313072 8_1:+72043286 Msa1212180:CDS
TAAGGGTTTGATCGACTCTT+TGG 0.322291 8_1:+72041117 Msa1212180:CDS
CGACTTCTTGTAACAGCATT+TGG 0.324821 8_1:-72042370 None:intergenic
ACAAGAATTCAGAAATGTTC+TGG 0.353071 8_1:-72040454 None:intergenic
CGAAGCTCCGTCAACTTCCT+TGG 0.356669 8_1:-72040621 None:intergenic
CCGGCCACGGTTAAACTTTG+TGG 0.358516 8_1:+72042840 Msa1212180:CDS
GACCATTCATTGCAACTAGA+AGG 0.364238 8_1:+72043322 Msa1212180:exon
CTTGATTCCTTGTTCAAGCC+TGG 0.376675 8_1:+72043218 Msa1212180:CDS
TTGCTGCCCAAGACCAAAAT+AGG 0.381690 8_1:-72041765 None:intergenic
CGTTCCGACCCGACCCGGTC+AGG 0.385412 8_1:+72040560 Msa1212180:CDS
GGCAAAACCCTGACCGGGTC+GGG 0.387039 8_1:-72040568 None:intergenic
CCGTTACATCGTTCCGATAA+CGG 0.394839 8_1:-72040690 None:intergenic
AATGGCTCCGAATTCCAAAA+TGG 0.397194 8_1:-72040589 None:intergenic
CGCAAGTTATCCTCAGAATC+TGG 0.402038 8_1:+72042916 Msa1212180:CDS
TATATTCACTGAAAATTGTT+GGG 0.410842 8_1:+72042342 Msa1212180:CDS
TTCCTTCTAGTTGCAATGAA+TGG 0.413016 8_1:-72043324 None:intergenic
GAACTGTTGCACAGTATTTG+AGG 0.416121 8_1:-72041919 None:intergenic
AGCCTCATCTTCTGTGCATC+AGG 0.420868 8_1:+72042627 Msa1212180:CDS
TTCAGAAATGTTCTGGTACT+AGG 0.425729 8_1:-72040447 None:intergenic
CCCTCTTTCCTAATAACAAC+TGG 0.431677 8_1:-72042958 None:intergenic
TTACAAGAAGTCGCAGTAAC+GGG 0.449771 8_1:+72042380 Msa1212180:CDS
CGGAGTGATGAGTGAAAGTT+CGG 0.453505 8_1:-72040670 None:intergenic
ATATATTCACTGAAAATTGT+TGG 0.453559 8_1:+72042341 Msa1212180:CDS
TCGATCAAACCCTTAGGTTC+AGG 0.456957 8_1:-72041109 None:intergenic
ACTTACTGCAATCTGATAGT+AGG 0.458699 8_1:-72042994 None:intergenic
TGCTGCTTGTTGCAAGAGAA+AGG 0.461836 8_1:-72042474 None:intergenic
AGATTGAAGCGTAGATTAGA+TGG 0.462446 8_1:+72043351 Msa1212180:three_prime_UTR
GCCGTCTATGACCTTCTTCA+CGG 0.464019 8_1:+72040765 Msa1212180:CDS
CAAAATGGCAAAACCCTGAC+CGG 0.464089 8_1:-72040574 None:intergenic
TCAGGAGCTTAGATGATGTT+CGG 0.464792 8_1:+72041882 Msa1212180:intron
TCTATATGGAGTTGAGCATA+TGG 0.464933 8_1:-72043494 None:intergenic
ACAGCCACCGCCTGAACCTA+AGG 0.465007 8_1:+72041099 Msa1212180:CDS
TTGATAGTGCTGGCCGGCCA+CGG 0.465393 8_1:+72042827 Msa1212180:CDS
AATCTGGTAGCGGCTCTGAT+TGG 0.473924 8_1:+72042932 Msa1212180:CDS
TACTAGGAAATAAATGTACT+TGG 0.479518 8_1:-72040431 None:intergenic
ACAAAGTTTGTTGATAGTGC+TGG 0.479560 8_1:+72042817 Msa1212180:CDS
TCTGGTTTGAAAGTGCGGTT+TGG 0.485291 8_1:+72042787 Msa1212180:CDS
TATGACTATCATCAGAATGC+AGG 0.494678 8_1:+72043275 Msa1212180:CDS
GCCAGTTGTTATTAGGAAAG+AGG 0.495621 8_1:+72042957 Msa1212180:CDS
CAAAAGTTTGGAAGAAGAGC+TGG 0.497150 8_1:+72041151 Msa1212180:CDS
TTGATTCCTTGTTCAAGCCT+GGG 0.497172 8_1:+72043219 Msa1212180:CDS
GAAATAAATGTACTTGGCTA+AGG 0.499314 8_1:-72040425 None:intergenic
GCTTCGAAACTACTCAACTT+TGG 0.501482 8_1:+72040638 Msa1212180:CDS
TTGAAGCTCACGGAAGCTAA+AGG 0.502180 8_1:-72042527 None:intergenic
ATCAGCAAAGGTAGGAGCGT+TGG 0.504280 8_1:-72040733 None:intergenic
CCAGTTGTTATTAGGAAAGA+GGG 0.514010 8_1:+72042958 Msa1212180:CDS
GAAGATGAGGCTGCTGAACC+AGG 0.514934 8_1:-72042616 None:intergenic
AGGATAGAATTACATCATGA+AGG 0.518374 8_1:+72042742 Msa1212180:CDS
CTTTGACTGCCATAATAAGA+TGG 0.520227 8_1:-72042721 None:intergenic
CTGGTAGCGGCTCTGATTGG+AGG 0.524236 8_1:+72042935 Msa1212180:CDS
GTTCCGACCCGACCCGGTCA+GGG 0.524671 8_1:+72040561 Msa1212180:CDS
AATCATCTGGATTTGTGCAA+AGG 0.525281 8_1:+72043165 Msa1212180:CDS
CATCTTATTATGGCAGTCAA+AGG 0.535720 8_1:+72042722 Msa1212180:CDS
CCACAAAGTTTAACCGTGGC+CGG 0.539578 8_1:-72042840 None:intergenic
CTTCCTTGGACAAACAAGAA+TGG 0.541331 8_1:-72040607 None:intergenic
AAAGAGTCGATCAAACCCTT+AGG 0.543678 8_1:-72041115 None:intergenic
CGGGAAATCACGGCCAGAAG+GGG 0.544051 8_1:+72042399 Msa1212180:CDS
AACGGGAAATCACGGCCAGA+AGG 0.548226 8_1:+72042397 Msa1212180:CDS
GAGCCATTCTTGTTTGTCCA+AGG 0.549208 8_1:+72040604 Msa1212180:CDS
TCAAGAACATTACATAAACT+TGG 0.549671 8_1:-72042874 None:intergenic
TATGAAGCGAACCGTGAAGA+AGG 0.552205 8_1:-72040776 None:intergenic
ATTGTTCTGGTTTGAAAGTG+CGG 0.557422 8_1:+72042782 Msa1212180:CDS
TGTTTGTCCAAGGAAGTTGA+CGG 0.563235 8_1:+72040614 Msa1212180:CDS
CTGACCGGGTCGGGTCGGAA+CGG 0.564383 8_1:-72040559 None:intergenic
AAATTAATAGAGAATCCGTT+AGG 0.565242 8_1:+72042554 Msa1212180:CDS
AATCTTTGCAAGAGAAACAA+TGG 0.568170 8_1:-72043408 None:intergenic
GTTACAAGAAGTCGCAGTAA+CGG 0.569792 8_1:+72042379 Msa1212180:CDS
ACGGGAAATCACGGCCAGAA+GGG 0.570522 8_1:+72042398 Msa1212180:CDS
CTTGTTGCAAGAGAAAGGAT+TGG 0.571982 8_1:-72042469 None:intergenic
GTCGCAGTAACGGGAAATCA+CGG 0.575047 8_1:+72042389 Msa1212180:CDS
CATGGCTACATCTGTCCTAA+CGG 0.575326 8_1:-72042569 None:intergenic
GGTTAATCTATCAATTCTGA+TGG 0.576569 8_1:-72043387 None:intergenic
TCATCTTCTGTGCATCAGGC+CGG 0.578173 8_1:+72042631 Msa1212180:CDS
TTGTGCAGGGAGGATTTGGG+CGG 0.582583 8_1:+72041018 Msa1212180:intron
AAACCCTTAGGTTCAGGCGG+TGG 0.584405 8_1:-72041103 None:intergenic
ACCGGGTCGGGTCGGAACGG+TGG 0.585225 8_1:-72040556 None:intergenic
ACATTACATAAACTTGGTGA+TGG 0.585353 8_1:-72042868 None:intergenic
TCAACTCCATATAGATTACA+AGG 0.590237 8_1:+72043502 Msa1212180:three_prime_UTR
TGAGTGAAAGTTCGGAGGGT+CGG 0.593095 8_1:-72040662 None:intergenic
TGGCAAAACCCTGACCGGGT+CGG 0.593613 8_1:-72040569 None:intergenic
ATCTCTTCACATACTGCTGT+AGG 0.599633 8_1:-72043110 None:intergenic
ATGACTATCATCAGAATGCA+GGG 0.600817 8_1:+72043276 Msa1212180:CDS
TTATCCTCAGAATCTGGTAG+CGG 0.601161 8_1:+72042922 Msa1212180:CDS
TGAACCAGGTGAATATTGTA+TGG 0.606211 8_1:-72042602 None:intergenic
ACTGCATCAACAAAAGTCCC+AGG 0.606468 8_1:-72043236 None:intergenic
AAACCCTGACCGGGTCGGGT+CGG 0.607699 8_1:-72040564 None:intergenic
AAGAAGAGCTGGTAACATGA+AGG 0.607820 8_1:+72041162 Msa1212180:CDS
AAAAGTCCCAGGCTTGAACA+AGG 0.615128 8_1:-72043225 None:intergenic
GTGATGAGTGAAAGTTCGGA+GGG 0.615353 8_1:-72040666 None:intergenic
CGTTAGGACAGATGTAGCCA+TGG 0.617479 8_1:+72042570 Msa1212180:CDS
AACAGCAATAGAGCTGCTGC+CGG 0.617637 8_1:-72042650 None:intergenic
GGGAAATCACGGCCAGAAGG+GGG 0.629891 8_1:+72042400 Msa1212180:CDS
AGAGCCGCTACCAGATTCTG+AGG 0.631582 8_1:-72042926 None:intergenic
TGTGCAGGGAGGATTTGGGC+GGG 0.632991 8_1:+72041019 Msa1212180:intron
CTATCAATTCTGATGGCATG+AGG 0.633967 8_1:-72043380 None:intergenic
CAGCCACCGCCTGAACCTAA+GGG 0.635006 8_1:+72041100 Msa1212180:CDS
CCGTTATCGGAACGATGTAA+CGG 0.636088 8_1:+72040690 Msa1212180:CDS
GGCGTGAGCAATATCAGCAA+AGG 0.636460 8_1:-72040745 None:intergenic
GGCCTGATGCACAGAAGATG+AGG 0.637574 8_1:-72042629 None:intergenic
AAAATGGCAAAACCCTGACC+GGG 0.637699 8_1:-72040573 None:intergenic
AGTTTGTTGATAGTGCTGGC+CGG 0.638222 8_1:+72042821 Msa1212180:CDS
TGAGCAATATCAGCAAAGGT+AGG 0.643892 8_1:-72040741 None:intergenic
ATCAAACCCTTAGGTTCAGG+CGG 0.649042 8_1:-72041106 None:intergenic
AAATCCATACAATATTCACC+TGG 0.654350 8_1:+72042598 Msa1212180:CDS
AGTGATGAGTGAAAGTTCGG+AGG 0.655173 8_1:-72040667 None:intergenic
GTCTTGGGCAGCAAACACAC+AGG 0.668051 8_1:+72041774 Msa1212180:CDS
ACCGTGAAGAAGGTCATAGA+CGG 0.669934 8_1:-72040766 None:intergenic
TTTATTCATTTGTTTAAACG+CGG 0.683638 8_1:-72040354 None:intergenic
TCTGATCGATCATCGCTGAG+AGG 0.700110 8_1:-72040510 None:intergenic
TCAACCACAAAGTTTAACCG+TGG 0.732512 8_1:-72042844 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATCTTTTCTTTTAAATGTT+AGG + chr8_1:72040821-72040840 Msa1212180:intron 15.0%
!!! ATCTTTTCTTTTAAATGTTA+GGG + chr8_1:72040822-72040841 Msa1212180:intron 15.0%
!!! CTCTTTAAAATTAATTAGAA+TGG - chr8_1:72042065-72042084 None:intergenic 15.0%
!!! AGAAGATATTGATATTTTTT+CGG - chr8_1:72042683-72042702 None:intergenic 15.0%
!! TTTATTCATTTGTTTAAACG+CGG - chr8_1:72040357-72040376 None:intergenic 20.0%
!! TTGCAAATTATTACATTTAC+AGG + chr8_1:72040914-72040933 Msa1212180:intron 20.0%
!! AATGCTTTATAGGTTAATTA+GGG + chr8_1:72040979-72040998 Msa1212180:intron 20.0%
!! TATATGCTTATTACATTCAT+AGG + chr8_1:72041211-72041230 Msa1212180:intron 20.0%
!! ATATGCTTATTACATTCATA+GGG + chr8_1:72041212-72041231 Msa1212180:intron 20.0%
!! TATCATAAGCAAAAAGAAAA+TGG - chr8_1:72041851-72041870 None:intergenic 20.0%
!!! TTTTAAAGAGAAAAAAAGTG+TGG + chr8_1:72042075-72042094 Msa1212180:intron 20.0%
!! ATATATTCACTGAAAATTGT+TGG + chr8_1:72042341-72042360 Msa1212180:CDS 20.0%
!! TATATTCACTGAAAATTGTT+GGG + chr8_1:72042342-72042361 Msa1212180:CDS 20.0%
!!! GAAGATATTGATATTTTTTC+GGG - chr8_1:72042682-72042701 None:intergenic 20.0%
!! ATATATCAAAAAGAATCATC+TGG + chr8_1:72043152-72043171 Msa1212180:CDS 20.0%
!!! GTTCACATTTATAAATTTTC+TGG + chr8_1:72043458-72043477 Msa1212180:three_prime_UTR 20.0%
! TACTAGGAAATAAATGTACT+TGG - chr8_1:72040434-72040453 None:intergenic 25.0%
! TGCTTTCAATTTCGAAAAAT+GGG + chr8_1:72040480-72040499 Msa1212180:exon 25.0%
!! TATTACATTTACAGGTTTTG+AGG + chr8_1:72040922-72040941 Msa1212180:intron 25.0%
! CAATGCTTTATAGGTTAATT+AGG + chr8_1:72040978-72040997 Msa1212180:intron 25.0%
! TATAGGTTAATTAGGGTTAA+TGG + chr8_1:72040986-72041005 Msa1212180:intron 25.0%
! ATGAATCATTTCTACAACAA+TGG - chr8_1:72041998-72042017 None:intergenic 25.0%
! TAGAATACTAAATATCTGGA+AGG - chr8_1:72042250-72042269 None:intergenic 25.0%
! TCCAGATATTTAGTATTCTA+TGG + chr8_1:72042250-72042269 Msa1212180:intron 25.0%
!! ATTATCATCATTTTCACCAT+AGG - chr8_1:72042289-72042308 None:intergenic 25.0%
!! CAATTTTCAGTGAATATATC+TGG - chr8_1:72042340-72042359 None:intergenic 25.0%
! AAATTAATAGAGAATCCGTT+AGG + chr8_1:72042554-72042573 Msa1212180:CDS 25.0%
! TCAAGAACATTACATAAACT+TGG - chr8_1:72042877-72042896 None:intergenic 25.0%
!! ATATATTTCTGTTGCGTAAA+TGG - chr8_1:72043138-72043157 None:intergenic 25.0%
!!! ATAAATTTTCTGGTTACTCA+TGG + chr8_1:72043468-72043487 Msa1212180:three_prime_UTR 25.0%
GAAATAAATGTACTTGGCTA+AGG - chr8_1:72040428-72040447 None:intergenic 30.0%
ACAAGAATTCAGAAATGTTC+TGG - chr8_1:72040457-72040476 None:intergenic 30.0%
CTGCTTTCAATTTCGAAAAA+TGG + chr8_1:72040479-72040498 Msa1212180:exon 30.0%
!! ATAAAGCATTGACATAGACA+CGG - chr8_1:72040969-72040988 None:intergenic 30.0%
TGTCTATGTCAATGCTTTAT+AGG + chr8_1:72040969-72040988 Msa1212180:intron 30.0%
!!! GTTTTGTTGACTCAAAAGTT+TGG + chr8_1:72041139-72041158 Msa1212180:CDS 30.0%
AAAGTTATTCCAAACAGAAG+TGG + chr8_1:72041414-72041433 Msa1212180:intron 30.0%
! CAATTTTATCCACTTCTGTT+TGG - chr8_1:72041426-72041445 None:intergenic 30.0%
!! AACTAGAGCATTACACTTTT+TGG + chr8_1:72041658-72041677 Msa1212180:intron 30.0%
!! ACTAGAGCATTACACTTTTT+GGG + chr8_1:72041659-72041678 Msa1212180:intron 30.0%
!! ATTACACTTTTTGGGAATGA+AGG + chr8_1:72041667-72041686 Msa1212180:intron 30.0%
TATGATATAGTTGCATCTTC+AGG + chr8_1:72041864-72041883 Msa1212180:intron 30.0%
TTGTTTGCAAAGACTTAACA+AGG - chr8_1:72041967-72041986 None:intergenic 30.0%
GCCATAGAATACTAAATATC+TGG - chr8_1:72042254-72042273 None:intergenic 30.0%
GATAATATCTCTGTCTTTAC+AGG + chr8_1:72042303-72042322 Msa1212180:intron 30.0%
TTATCTTGAGTTTCAGTTTC+AGG - chr8_1:72042442-72042461 None:intergenic 30.0%
!!! TAATTTCGTTTTGAAGCTCA+CGG - chr8_1:72042540-72042559 None:intergenic 30.0%
! TTGTATGGATTTTTCATCCA+TGG - chr8_1:72042590-72042609 None:intergenic 30.0%
AAATCCATACAATATTCACC+TGG + chr8_1:72042598-72042617 Msa1212180:CDS 30.0%
TCTCTTGTTCCATCTTATTA+TGG + chr8_1:72042712-72042731 Msa1212180:CDS 30.0%
AGGATAGAATTACATCATGA+AGG + chr8_1:72042742-72042761 Msa1212180:CDS 30.0%
! ACATTACATAAACTTGGTGA+TGG - chr8_1:72042871-72042890 None:intergenic 30.0%
GGTTAATCTATCAATTCTGA+TGG - chr8_1:72043390-72043409 None:intergenic 30.0%
AATCTTTGCAAGAGAAACAA+TGG - chr8_1:72043411-72043430 None:intergenic 30.0%
TTCAGAAATGTTCTGGTACT+AGG - chr8_1:72040450-72040469 None:intergenic 35.0%
!!! GGTTTTGCCATTTTGGAATT+CGG + chr8_1:72040582-72040601 Msa1212180:CDS 35.0%
AGGTTAATTAGGGTTAATGG+TGG + chr8_1:72040989-72041008 Msa1212180:intron 35.0%
GTAATCGAAGAGAAAATGAG+AGG + chr8_1:72041309-72041328 Msa1212180:intron 35.0%
GAATTGATTACGTGATTGCA+GGG - chr8_1:72041455-72041474 None:intergenic 35.0%
TGAATTGATTACGTGATTGC+AGG - chr8_1:72041456-72041475 None:intergenic 35.0%
ATCAATTCATTCGTGACCAT+TGG + chr8_1:72041467-72041486 Msa1212180:intron 35.0%
TAAATACCAAGCCTGAAATC+TGG + chr8_1:72041541-72041560 Msa1212180:intron 35.0%
TGTACTGAATGCTTGAATTC+CGG + chr8_1:72041595-72041614 Msa1212180:intron 35.0%
ACGTTTGGAAGGGATAAATT+TGG - chr8_1:72041625-72041644 None:intergenic 35.0%
! ATGCTCTAGTTTGCATTCAA+GGG - chr8_1:72041649-72041668 None:intergenic 35.0%
! AATGCTCTAGTTTGCATTCA+AGG - chr8_1:72041650-72041669 None:intergenic 35.0%
TTTATGTTGTTCACTGCAGA+TGG + chr8_1:72041730-72041749 Msa1212180:intron 35.0%
!!! TTGCTACCTATTTTGGTCTT+GGG + chr8_1:72041759-72041778 Msa1212180:CDS 35.0%
TTCTAAACCTGATGCTTGTT+TGG + chr8_1:72042109-72042128 Msa1212180:intron 35.0%
TGAACCAGGTGAATATTGTA+TGG - chr8_1:72042605-72042624 None:intergenic 35.0%
CTTTGACTGCCATAATAAGA+TGG - chr8_1:72042724-72042743 None:intergenic 35.0%
CATCTTATTATGGCAGTCAA+AGG + chr8_1:72042722-72042741 Msa1212180:CDS 35.0%
!! ATTGTTCTGGTTTGAAAGTG+CGG + chr8_1:72042782-72042801 Msa1212180:CDS 35.0%
!! ACAAAGTTTGTTGATAGTGC+TGG + chr8_1:72042817-72042836 Msa1212180:CDS 35.0%
! CCAGTTGTTATTAGGAAAGA+GGG + chr8_1:72042958-72042977 Msa1212180:CDS 35.0%
ACTTACTGCAATCTGATAGT+AGG - chr8_1:72042997-72043016 None:intergenic 35.0%
AATCATCTGGATTTGTGCAA+AGG + chr8_1:72043165-72043184 Msa1212180:CDS 35.0%
TATGACTATCATCAGAATGC+AGG + chr8_1:72043275-72043294 Msa1212180:CDS 35.0%
ATGACTATCATCAGAATGCA+GGG + chr8_1:72043276-72043295 Msa1212180:CDS 35.0%
TCAGAATGCAGGGATTAAAT+TGG + chr8_1:72043286-72043305 Msa1212180:CDS 35.0%
GCAATGAATGGTCAATTTCT+TGG - chr8_1:72043315-72043334 None:intergenic 35.0%
! TTCCTTCTAGTTGCAATGAA+TGG - chr8_1:72043327-72043346 None:intergenic 35.0%
AGATTGAAGCGTAGATTAGA+TGG + chr8_1:72043351-72043370 Msa1212180:three_prime_UTR 35.0%
TCTATATGGAGTTGAGCATA+TGG - chr8_1:72043497-72043516 None:intergenic 35.0%
AATGGCTCCGAATTCCAAAA+TGG - chr8_1:72040592-72040611 None:intergenic 40.0%
CTTCCTTGGACAAACAAGAA+TGG - chr8_1:72040610-72040629 None:intergenic 40.0%
TGTTTGTCCAAGGAAGTTGA+CGG + chr8_1:72040614-72040633 Msa1212180:CDS 40.0%
GCTTCGAAACTACTCAACTT+TGG + chr8_1:72040638-72040657 Msa1212180:CDS 40.0%
TTCACTCATCACTCCGTTAT+CGG + chr8_1:72040677-72040696 Msa1212180:CDS 40.0%
TGAGCAATATCAGCAAAGGT+AGG - chr8_1:72040744-72040763 None:intergenic 40.0%
TGTAATCACATGTCAGACGT+TGG - chr8_1:72040878-72040897 None:intergenic 40.0%
! TGAGGTGTTAGTGTTATGTG+CGG + chr8_1:72040940-72040959 Msa1212180:intron 40.0%
!! AATGGTGGTGAATTTTGTGC+AGG + chr8_1:72041004-72041023 Msa1212180:intron 40.0%
!! ATGGTGGTGAATTTTGTGCA+GGG + chr8_1:72041005-72041024 Msa1212180:intron 40.0%
! AATTTTGTGCAGGGAGGATT+TGG + chr8_1:72041014-72041033 Msa1212180:intron 40.0%
! ATTTTGTGCAGGGAGGATTT+GGG + chr8_1:72041015-72041034 Msa1212180:intron 40.0%
AAAGAGTCGATCAAACCCTT+AGG - chr8_1:72041118-72041137 None:intergenic 40.0%
! TAAGGGTTTGATCGACTCTT+TGG + chr8_1:72041117-72041136 Msa1212180:CDS 40.0%
CAAAAGTTTGGAAGAAGAGC+TGG + chr8_1:72041151-72041170 Msa1212180:CDS 40.0%
AAGAAGAGCTGGTAACATGA+AGG + chr8_1:72041162-72041181 Msa1212180:CDS 40.0%
TCATTCGTGACCATTGGATT+CGG + chr8_1:72041473-72041492 Msa1212180:intron 40.0%
ACTATCTGATCCGAATCCAA+TGG - chr8_1:72041486-72041505 None:intergenic 40.0%
CCATCTGATCCTTGATTCAA+CGG + chr8_1:72041565-72041584 Msa1212180:intron 40.0%
GTACTGAATGCTTGAATTCC+GGG + chr8_1:72041596-72041615 Msa1212180:intron 40.0%
AAGGGATAAATTTGGACACC+CGG - chr8_1:72041617-72041636 None:intergenic 40.0%
ATTCAAGGGAACGTTTGGAA+GGG - chr8_1:72041635-72041654 None:intergenic 40.0%
TTTGCATTCAAGGGAACGTT+TGG - chr8_1:72041640-72041659 None:intergenic 40.0%
! GCTACTCTTGCTACCTATTT+TGG + chr8_1:72041752-72041771 Msa1212180:CDS 40.0%
!!! CTTGCTACCTATTTTGGTCT+TGG + chr8_1:72041758-72041777 Msa1212180:CDS 40.0%
AGCAAACACACAGGTAATTG+TGG + chr8_1:72041783-72041802 Msa1212180:intron 40.0%
! AGCAGATGACTAGAAAGCAT+GGG - chr8_1:72041824-72041843 None:intergenic 40.0%
TAGCAGATGACTAGAAAGCA+TGG - chr8_1:72041825-72041844 None:intergenic 40.0%
TCAGGAGCTTAGATGATGTT+CGG + chr8_1:72041882-72041901 Msa1212180:intron 40.0%
GAACTGTTGCACAGTATTTG+AGG - chr8_1:72041922-72041941 None:intergenic 40.0%
CTGTGCAACAGTTCTATTCT+TGG + chr8_1:72041928-72041947 Msa1212180:CDS 40.0%
TGTTCTACCAAACAAGCATC+AGG - chr8_1:72042119-72042138 None:intergenic 40.0%
CGACTTCTTGTAACAGCATT+TGG - chr8_1:72042373-72042392 None:intergenic 40.0%
GTTACAAGAAGTCGCAGTAA+CGG + chr8_1:72042379-72042398 Msa1212180:CDS 40.0%
TTACAAGAAGTCGCAGTAAC+GGG + chr8_1:72042380-72042399 Msa1212180:CDS 40.0%
CTTGTTGCAAGAGAAAGGAT+TGG - chr8_1:72042472-72042491 None:intergenic 40.0%
GCATTTCAGCTTCATTGTTC+TGG + chr8_1:72042769-72042788 Msa1212180:CDS 40.0%
TCAACCACAAAGTTTAACCG+TGG - chr8_1:72042847-72042866 None:intergenic 40.0%
TTATCCTCAGAATCTGGTAG+CGG + chr8_1:72042922-72042941 Msa1212180:CDS 40.0%
! ATTGGAGGCCAGTTGTTATT+AGG + chr8_1:72042950-72042969 Msa1212180:CDS 40.0%
! GCCAGTTGTTATTAGGAAAG+AGG + chr8_1:72042957-72042976 Msa1212180:CDS 40.0%
CCCTCTTTCCTAATAACAAC+TGG - chr8_1:72042961-72042980 None:intergenic 40.0%
ATCTCTTCACATACTGCTGT+AGG - chr8_1:72043113-72043132 None:intergenic 40.0%
TTGATTCCTTGTTCAAGCCT+GGG + chr8_1:72043219-72043238 Msa1212180:CDS 40.0%
GACCATTCATTGCAACTAGA+AGG + chr8_1:72043322-72043341 Msa1212180:exon 40.0%
CTATCAATTCTGATGGCATG+AGG - chr8_1:72043383-72043402 None:intergenic 40.0%
AAAATGGCAAAACCCTGACC+GGG - chr8_1:72040576-72040595 None:intergenic 45.0%
CAAAATGGCAAAACCCTGAC+CGG - chr8_1:72040577-72040596 None:intergenic 45.0%
! GAGCCATTCTTGTTTGTCCA+AGG + chr8_1:72040604-72040623 Msa1212180:CDS 45.0%
GTGATGAGTGAAAGTTCGGA+GGG - chr8_1:72040669-72040688 None:intergenic 45.0%
AGTGATGAGTGAAAGTTCGG+AGG - chr8_1:72040670-72040689 None:intergenic 45.0%
CGGAGTGATGAGTGAAAGTT+CGG - chr8_1:72040673-72040692 None:intergenic 45.0%
CCGTTACATCGTTCCGATAA+CGG - chr8_1:72040693-72040712 None:intergenic 45.0%
CCGTTATCGGAACGATGTAA+CGG + chr8_1:72040690-72040709 Msa1212180:CDS 45.0%
ACCGTGAAGAAGGTCATAGA+CGG - chr8_1:72040769-72040788 None:intergenic 45.0%
TATGAAGCGAACCGTGAAGA+AGG - chr8_1:72040779-72040798 None:intergenic 45.0%
TGTAGCGTAGCACCTTCTAA+TGG + chr8_1:72040849-72040868 Msa1212180:intron 45.0%
!! AGACGTTGGCTTCCATTAGA+AGG - chr8_1:72040864-72040883 None:intergenic 45.0%
ATCAAACCCTTAGGTTCAGG+CGG - chr8_1:72041109-72041128 None:intergenic 45.0%
TCGATCAAACCCTTAGGTTC+AGG - chr8_1:72041112-72041131 None:intergenic 45.0%
GATCAGATGGTCCAGATTTC+AGG - chr8_1:72041555-72041574 None:intergenic 45.0%
CCGTTGAATCAAGGATCAGA+TGG - chr8_1:72041568-72041587 None:intergenic 45.0%
CATCAGTGACCGTTGAATCA+AGG - chr8_1:72041577-72041596 None:intergenic 45.0%
CATTCAAGGGAACGTTTGGA+AGG - chr8_1:72041636-72041655 None:intergenic 45.0%
TTGCTGCCCAAGACCAAAAT+AGG - chr8_1:72041768-72041787 None:intergenic 45.0%
TGGCACTAGTTGAGAACCTA+TGG + chr8_1:72042270-72042289 Msa1212180:intron 45.0%
! TGCTGCTTGTTGCAAGAGAA+AGG - chr8_1:72042477-72042496 None:intergenic 45.0%
TTGAAGCTCACGGAAGCTAA+AGG - chr8_1:72042530-72042549 None:intergenic 45.0%
CATGGCTACATCTGTCCTAA+CGG - chr8_1:72042572-72042591 None:intergenic 45.0%
! TCTGGTTTGAAAGTGCGGTT+TGG + chr8_1:72042787-72042806 Msa1212180:CDS 45.0%
!! AGTTTGTTGATAGTGCTGGC+CGG + chr8_1:72042821-72042840 Msa1212180:CDS 45.0%
CGCAAGTTATCCTCAGAATC+TGG + chr8_1:72042916-72042935 Msa1212180:CDS 45.0%
CTTGATTCCTTGTTCAAGCC+TGG + chr8_1:72043218-72043237 Msa1212180:CDS 45.0%
AAAAGTCCCAGGCTTGAACA+AGG - chr8_1:72043228-72043247 None:intergenic 45.0%
ACTGCATCAACAAAAGTCCC+AGG - chr8_1:72043239-72043258 None:intergenic 45.0%
TCTGATCGATCATCGCTGAG+AGG - chr8_1:72040513-72040532 None:intergenic 50.0%
!! CGGTCAGGGTTTTGCCATTT+TGG + chr8_1:72040575-72040594 Msa1212180:CDS 50.0%
TGAGTGAAAGTTCGGAGGGT+CGG - chr8_1:72040665-72040684 None:intergenic 50.0%
! ATCAGCAAAGGTAGGAGCGT+TGG - chr8_1:72040736-72040755 None:intergenic 50.0%
GGCGTGAGCAATATCAGCAA+AGG - chr8_1:72040748-72040767 None:intergenic 50.0%
GCCGTCTATGACCTTCTTCA+CGG + chr8_1:72040765-72040784 Msa1212180:CDS 50.0%
! GTGGTGAATTTTGTGCAGGG+AGG + chr8_1:72041008-72041027 Msa1212180:intron 50.0%
GATGGTCCAGATTTCAGGCT+TGG - chr8_1:72041550-72041569 None:intergenic 50.0%
! GTCGCAGTAACGGGAAATCA+CGG + chr8_1:72042389-72042408 Msa1212180:CDS 50.0%
GATACCAACAAACCCCCTTC+TGG - chr8_1:72042415-72042434 None:intergenic 50.0%
CGTTAGGACAGATGTAGCCA+TGG + chr8_1:72042570-72042589 Msa1212180:CDS 50.0%
AGCCTCATCTTCTGTGCATC+AGG + chr8_1:72042627-72042646 Msa1212180:CDS 50.0%
TCATCTTCTGTGCATCAGGC+CGG + chr8_1:72042631-72042650 Msa1212180:CDS 50.0%
AACAGCAATAGAGCTGCTGC+CGG - chr8_1:72042653-72042672 None:intergenic 50.0%
CCACAAAGTTTAACCGTGGC+CGG - chr8_1:72042843-72042862 None:intergenic 50.0%
!! AATCTGGTAGCGGCTCTGAT+TGG + chr8_1:72042932-72042951 Msa1212180:CDS 50.0%
GTGTGTGCGTGCATGTGTAT+AGG - chr8_1:72043026-72043045 None:intergenic 50.0%
CGAAGCTCCGTCAACTTCCT+TGG - chr8_1:72040624-72040643 None:intergenic 55.0%
TTGTGCAGGGAGGATTTGGG+CGG + chr8_1:72041018-72041037 Msa1212180:intron 55.0%
AAACCCTTAGGTTCAGGCGG+TGG - chr8_1:72041106-72041125 None:intergenic 55.0%
GTCTTGGGCAGCAAACACAC+AGG + chr8_1:72041774-72041793 Msa1212180:CDS 55.0%
AACGGGAAATCACGGCCAGA+AGG + chr8_1:72042397-72042416 Msa1212180:CDS 55.0%
ACGGGAAATCACGGCCAGAA+GGG + chr8_1:72042398-72042417 Msa1212180:CDS 55.0%
GAAGATGAGGCTGCTGAACC+AGG - chr8_1:72042619-72042638 None:intergenic 55.0%
GGCCTGATGCACAGAAGATG+AGG - chr8_1:72042632-72042651 None:intergenic 55.0%
CCGGCCACGGTTAAACTTTG+TGG + chr8_1:72042840-72042859 Msa1212180:CDS 55.0%
AGAGCCGCTACCAGATTCTG+AGG - chr8_1:72042929-72042948 None:intergenic 55.0%
TGGCAAAACCCTGACCGGGT+CGG - chr8_1:72040572-72040591 None:intergenic 60.0%
TGTGCAGGGAGGATTTGGGC+GGG + chr8_1:72041019-72041038 Msa1212180:intron 60.0%
ACAGCCACCGCCTGAACCTA+AGG + chr8_1:72041099-72041118 Msa1212180:CDS 60.0%
CAGCCACCGCCTGAACCTAA+GGG + chr8_1:72041100-72041119 Msa1212180:CDS 60.0%
CGGGAAATCACGGCCAGAAG+GGG + chr8_1:72042399-72042418 Msa1212180:CDS 60.0%
GGGAAATCACGGCCAGAAGG+GGG + chr8_1:72042400-72042419 Msa1212180:CDS 60.0%
ACGGCCAGAAGGGGGTTTGT+TGG + chr8_1:72042408-72042427 Msa1212180:CDS 60.0%
!! TTGATAGTGCTGGCCGGCCA+CGG + chr8_1:72042827-72042846 Msa1212180:CDS 60.0%
!! CTGGTAGCGGCTCTGATTGG+AGG + chr8_1:72042935-72042954 Msa1212180:CDS 60.0%
AAACCCTGACCGGGTCGGGT+CGG - chr8_1:72040567-72040586 None:intergenic 65.0%
GGCAAAACCCTGACCGGGTC+GGG - chr8_1:72040571-72040590 None:intergenic 65.0%
ACCACCGTTCCGACCCGACC+CGG + chr8_1:72040555-72040574 Msa1212180:CDS 70.0%
CTGACCGGGTCGGGTCGGAA+CGG - chr8_1:72040562-72040581 None:intergenic 70.0%
GTTCCGACCCGACCCGGTCA+GGG + chr8_1:72040561-72040580 Msa1212180:CDS 70.0%
ACCGGGTCGGGTCGGAACGG+TGG - chr8_1:72040559-72040578 None:intergenic 75.0%
CGTTCCGACCCGACCCGGTC+AGG + chr8_1:72040560-72040579 Msa1212180:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 72040353 72043523 72040353 ID=Msa1212180;Name=Msa1212180
chr8_1 mRNA 72040353 72043523 72040353 ID=Msa1212180-mRNA-1;Parent=Msa1212180;Name=Msa1212180-mRNA-1;_AED=0.12;_eAED=0.12;_QI=145|1|1|1|1|1|6|183|492
chr8_1 exon 72040353 72040786 72040353 ID=Msa1212180-mRNA-1:exon:24277;Parent=Msa1212180-mRNA-1
chr8_1 exon 72041026 72041183 72041026 ID=Msa1212180-mRNA-1:exon:24278;Parent=Msa1212180-mRNA-1
chr8_1 exon 72041749 72041795 72041749 ID=Msa1212180-mRNA-1:exon:24279;Parent=Msa1212180-mRNA-1
chr8_1 exon 72041886 72041949 72041886 ID=Msa1212180-mRNA-1:exon:24280;Parent=Msa1212180-mRNA-1
chr8_1 exon 72042325 72043010 72042325 ID=Msa1212180-mRNA-1:exon:24281;Parent=Msa1212180-mRNA-1
chr8_1 exon 72043106 72043523 72043106 ID=Msa1212180-mRNA-1:exon:24282;Parent=Msa1212180-mRNA-1
chr8_1 five_prime_UTR 72040353 72040497 72040353 ID=Msa1212180-mRNA-1:five_prime_utr;Parent=Msa1212180-mRNA-1
chr8_1 CDS 72040498 72040786 72040498 ID=Msa1212180-mRNA-1:cds;Parent=Msa1212180-mRNA-1
chr8_1 CDS 72041026 72041183 72041026 ID=Msa1212180-mRNA-1:cds;Parent=Msa1212180-mRNA-1
chr8_1 CDS 72041749 72041795 72041749 ID=Msa1212180-mRNA-1:cds;Parent=Msa1212180-mRNA-1
chr8_1 CDS 72041886 72041949 72041886 ID=Msa1212180-mRNA-1:cds;Parent=Msa1212180-mRNA-1
chr8_1 CDS 72042325 72043010 72042325 ID=Msa1212180-mRNA-1:cds;Parent=Msa1212180-mRNA-1
chr8_1 CDS 72043106 72043340 72043106 ID=Msa1212180-mRNA-1:cds;Parent=Msa1212180-mRNA-1
chr8_1 three_prime_UTR 72043341 72043523 72043341 ID=Msa1212180-mRNA-1:three_prime_utr;Parent=Msa1212180-mRNA-1
Gene Sequence

>Msa1212180

ATGGGTTCTCTTCCTCTCAGCGATGATCGATCAGAAATTGTATTCTTCGACGTAGAAACCACCGTTCCGACCCGACCCGGTCAGGGTTTTGCCATTTTGGAATTCGGAGCCATTCTTGTTTGTCCAAGGAAGTTGACGGAGCTTCGAAACTACTCAACTTTGGTCCGACCCTCCGAACTTTCACTCATCACTCCGTTATCGGAACGATGTAACGGAATCAACGCTGAAGCTGTTTCCAACGCTCCTACCTTTGCTGATATTGCTCACGCCGTCTATGACCTTCTTCACGGGAGGATTTGGGCGGGTCATAATATCATAAGATTTGATTGCGTTCGAATTAGAGATGCATTTGCTGCGATTAAACAGCCACCGCCTGAACCTAAGGGTTTGATCGACTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCTACCTATTTTGGTCTTGGGCAGCAAACACACAGGAGCTTAGATGATGTTCGGATGAATCTTGAAGTCCTCAAATACTGTGCAACAGTTCTATTCTTGGAGTCAAGTCTTCCAGATATATTCACTGAAAATTGTTGGGTTTCACCAAATGCTGTTACAAGAAGTCGCAGTAACGGGAAATCACGGCCAGAAGGGGGTTTGTTGGTATCATCTCCTGAAACTGAAACTCAAGATAAAAATCATCCAATCCTTTCTCTTGCAACAAGCAGCACAGAAATCGCTATTTCAAATGCTGCAGATACCTTTAGCTTCCGTGAGCTTCAAAACGAAATTAATAGAGAATCCGTTAGGACAGATGTAGCCATGGATGAAAAATCCATACAATATTCACCTGGTTCAGCAGCCTCATCTTCTGTGCATCAGGCCGGCAGCAGCTCTATTGCTGTTTTAGAGCCCGAAAAAATATCAATATCTTCTATTGATGCATCTCTTGTTCCATCTTATTATGGCAGTCAAAGGATAGAATTACATCATGAAGGTTTCGCATTTCAGCTTCATTGTTCTGGTTTGAAAGTGCGGTTTGGAATAAGCACAAAGTTTGTTGATAGTGCTGGCCGGCCACGGTTAAACTTTGTGGTTGATCCATCACCAAGTTTATGTAATGTTCTTGATGCATGTGACAATGTTGCACGCAAGTTATCCTCAGAATCTGGTAGCGGCTCTGATTGGAGGCCAGTTGTTATTAGGAAAGAGGGCTTCTTCAACTATCCTACTATCAGATTGCATATACCTACAGCAGTATGTGAAGAGATTGCCATTTACGCAACAGAAATATATCAAAAAGAATCATCTGGATTTGTGCAAAGGCTTCTTTTCTGCAAGTTCGACGCTGCTGAACTTGATTCCTTGTTCAAGCCTGGGACTTTTGTTGATGCAGTCTTTTCGTTAGATCTGTATGACTATCATCAGAATGCAGGGATTAAATTGGTTGCCAAGAAATTGACCATTCATTGCAACTAG

Protein sequence

>Msa1212180

MGSLPLSDDRSEIVFFDVETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPSELSLITPLSERCNGINAEAVSNAPTFADIAHAVYDLLHGRIWAGHNIIRFDCVRIRDAFAAIKQPPPEPKGLIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENCWVSPNAVTRSRSNGKSRPEGGLLVSSPETETQDKNHPILSLATSSTEIAISNAADTFSFRELQNEINRESVRTDVAMDEKSIQYSPGSAASSSVHQAGSSSIAVLEPEKISISSIDASLVPSYYGSQRIELHHEGFAFQLHCSGLKVRFGISTKFVDSAGRPRLNFVVDPSPSLCNVLDACDNVARKLSSESGSGSDWRPVVIRKEGFFNYPTIRLHIPTAVCEEIAIYATEIYQKESSGFVQRLLFCKFDAAELDSLFKPGTFVDAVFSLDLYDYHQNAGIKLVAKKLTIHCN*