Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212530 | sp|Q500W7|PIGM_ARATH | 67.123 | 292 | 91 | 2 | 6 | 292 | 159 | 450 | 4.43e-135 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212530 | A0A396JMI3 | 98.868 | 265 | 3 | 0 | 28 | 292 | 91 | 355 | 0.0 | 534 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1095790 | Msa1212530 | -0.809715 | 1.650257e-50 | -8.615850e-47 |
| Msa1122780 | Msa1212530 | -0.812356 | 4.418789e-51 | -8.615850e-47 |
| Msa1212530 | Msa1254620 | -0.803686 | 3.096388e-49 | -8.615850e-47 |
| Msa1212530 | Msa1257070 | -0.800648 | 1.305939e-48 | -8.615850e-47 |
| Msa1212530 | Msa1299820 | 0.873562 | 1.335483e-67 | -8.615850e-47 |
| Msa1212530 | Msa1463600 | -0.804016 | 2.644671e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212530 | MtrunA17_Chr1g0178021 | 98.868 | 265 | 3 | 0 | 28 | 292 | 91 | 355 | 0.0 | 534 |
| Msa1212530 | MtrunA17_Chr8g0353771 | 95.122 | 287 | 14 | 0 | 6 | 292 | 147 | 433 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212530 | AT5G22130.3 | 67.123 | 292 | 91 | 2 | 6 | 292 | 144 | 435 | 2.73e-136 | 392 |
| Msa1212530 | AT5G22130.1 | 67.123 | 292 | 91 | 2 | 6 | 292 | 159 | 450 | 4.51e-136 | 392 |
| Msa1212530 | AT5G22130.2 | 67.123 | 292 | 91 | 2 | 6 | 292 | 179 | 470 | 6.09e-136 | 393 |
Find 78 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGACATGCTTCAATTT+TGG | 0.140491 | 8_1:+72465542 | Msa1212530:three_prime_UTR |
| ATGGACTTGTTGTCCATTTC+AGG | 0.156966 | 8_1:+72464192 | Msa1212530:CDS |
| TATCATATATATCTTCATTA+TGG | 0.159025 | 8_1:+72464536 | Msa1212530:CDS |
| GGAGTAAAATGAAGCTTAAA+TGG | 0.218015 | 8_1:+72465229 | Msa1212530:CDS |
| ATCATTTGTGGCCTTCAATA+AGG | 0.268612 | 8_1:+72464676 | Msa1212530:CDS |
| AACTGTTATCTTGGTGAAAC+TGG | 0.301430 | 8_1:+72465596 | Msa1212530:three_prime_UTR |
| GGCCTGTTCTACTGCTTATA+TGG | 0.318153 | 8_1:+72464437 | Msa1212530:CDS |
| ATCATATATATCTTCATTAT+GGG | 0.322760 | 8_1:+72464537 | Msa1212530:CDS |
| TTACTCCATGGGAGTATTAG+AGG | 0.330939 | 8_1:-72465213 | None:intergenic |
| TGCTGCAGAATTATGCAGTT+GGG | 0.354493 | 8_1:+72463398 | Msa1212530:CDS |
| TTACCGCACAATACTTTGTT+TGG | 0.354705 | 8_1:+72465175 | Msa1212530:CDS |
| GTCTGCACAAATAGGCAAAA+TGG | 0.358923 | 8_1:-72464650 | None:intergenic |
| TTCAAGTTTAGTTACGTGTT+TGG | 0.361895 | 8_1:-72465460 | None:intergenic |
| ATGATACAGTCTGCACAAAT+AGG | 0.361999 | 8_1:-72464658 | None:intergenic |
| AACAAGCAATTCCTGTCTTC+GGG | 0.365531 | 8_1:-72464326 | None:intergenic |
| GGGCTACCTTCTTGAGTTCA+AGG | 0.370710 | 8_1:+72465308 | Msa1212530:CDS |
| ATAGGAATAGAATAAATTAT+AGG | 0.374447 | 8_1:-72464221 | None:intergenic |
| GGATCAAGAACCAGGATTAT+AGG | 0.393457 | 8_1:-72464239 | None:intergenic |
| GACTACAACAACTGTTATCT+TGG | 0.393717 | 8_1:+72465587 | Msa1212530:three_prime_UTR |
| TACTTAACAAACCTTATTGA+AGG | 0.405603 | 8_1:-72464687 | None:intergenic |
| GAGTAAAATGAAGCTTAAAT+GGG | 0.414118 | 8_1:+72465230 | Msa1212530:CDS |
| TGTGCAGACTGTATCATTTG+TGG | 0.414638 | 8_1:+72464664 | Msa1212530:CDS |
| CTCAAACCCATTGGTTATTG+TGG | 0.415086 | 8_1:+72465286 | Msa1212530:CDS |
| GAACAAGCAATTCCTGTCTT+CGG | 0.419995 | 8_1:-72464327 | None:intergenic |
| AGAAACCCGTCCTACGGAAC+TGG | 0.423905 | 8_1:+72464282 | Msa1212530:CDS |
| ACAAGGAACAGGATGATGTT+TGG | 0.426211 | 8_1:+72464380 | Msa1212530:CDS |
| TTATAGGATAAATCCTGAAA+TGG | 0.429185 | 8_1:-72464205 | None:intergenic |
| ATGATGTTTGGACTGGTCTC+AGG | 0.430771 | 8_1:+72464392 | Msa1212530:CDS |
| GATCCGAACTTCTTCCCATC+TGG | 0.432629 | 8_1:+72464257 | Msa1212530:CDS |
| TTATTCTATTCCTATAATCC+TGG | 0.448106 | 8_1:+72464229 | Msa1212530:CDS |
| TGACCAGATGGGAAGAAGTT+CGG | 0.452574 | 8_1:-72464260 | None:intergenic |
| TCAAACCCATTGGTTATTGT+GGG | 0.453182 | 8_1:+72465287 | Msa1212530:CDS |
| AAAGCTTATTCACAAGGAAC+AGG | 0.453748 | 8_1:+72464369 | Msa1212530:CDS |
| ATCCATATAAGCAGTAGAAC+AGG | 0.454270 | 8_1:-72464439 | None:intergenic |
| GTTTGGACTGGTCTCAGGAT+TGG | 0.468223 | 8_1:+72464397 | Msa1212530:CDS |
| TGTTCTACTGCTTATATGGA+TGG | 0.486269 | 8_1:+72464441 | Msa1212530:CDS |
| ATATATATGATAGAAATAGA+TGG | 0.487731 | 8_1:-72464525 | None:intergenic |
| TGGGAATGATATTTCAGTTG+TGG | 0.496055 | 8_1:+72464556 | Msa1212530:CDS |
| TTTGGAAGGTTAACAATGCA+TGG | 0.502229 | 8_1:+72465560 | Msa1212530:three_prime_UTR |
| GTACTCCAGTTCCGTAGGAC+GGG | 0.503315 | 8_1:-72464287 | None:intergenic |
| AGAAGGAGAGACCCGAAGAC+AGG | 0.525311 | 8_1:+72464315 | Msa1212530:CDS |
| TCCAAAATTGAAGCATGTCA+AGG | 0.537903 | 8_1:-72465543 | None:intergenic |
| ATTATGTTGACGAATAATCA+TGG | 0.538844 | 8_1:-72465400 | None:intergenic |
| TAAACTTGAATGAGTAACCT+TGG | 0.540915 | 8_1:+72465473 | Msa1212530:exon |
| AGAAGTTCGGATCAAGAACC+AGG | 0.541570 | 8_1:-72464247 | None:intergenic |
| TTTAGTTACGTGTTTGGAGT+GGG | 0.541661 | 8_1:-72465454 | None:intergenic |
| GGCGATACATAGCAATGGTA+AGG | 0.542547 | 8_1:-72465521 | None:intergenic |
| AGAACAGGCCAGTACATATG+AGG | 0.545080 | 8_1:-72464424 | None:intergenic |
| GGATCGGAGCTCAAACCCAT+TGG | 0.545225 | 8_1:+72465277 | Msa1212530:CDS |
| CCAAAATTGAAGCATGTCAA+GGG | 0.547162 | 8_1:-72465542 | None:intergenic |
| TAGATGGAGAAGTTGTGCCT+TGG | 0.560622 | 8_1:-72464509 | None:intergenic |
| GTTCTACTGCTTATATGGAT+GGG | 0.561773 | 8_1:+72464442 | Msa1212530:CDS |
| AGGACGGGTTTCTGACCAGA+TGG | 0.566451 | 8_1:-72464272 | None:intergenic |
| GTTTAGTTACGTGTTTGGAG+TGG | 0.571992 | 8_1:-72465455 | None:intergenic |
| AAAATGAAGCTTAAATGGGG+TGG | 0.578593 | 8_1:+72465234 | Msa1212530:CDS |
| CTGGTCAGAAACCCGTCCTA+CGG | 0.583333 | 8_1:+72464276 | Msa1212530:CDS |
| GTAGCCCCACAATAACCAAT+GGG | 0.587492 | 8_1:-72465292 | None:intergenic |
| GAACAGGATGATGTTTGGAC+TGG | 0.587696 | 8_1:+72464385 | Msa1212530:CDS |
| GCTGCAGAATTATGCAGTTG+GGG | 0.588901 | 8_1:+72463399 | Msa1212530:CDS |
| TTGCTGCAGAATTATGCAGT+TGG | 0.591344 | 8_1:+72463397 | Msa1212530:CDS |
| TGAAACTCATTCACAGACCA+AGG | 0.591648 | 8_1:-72465490 | None:intergenic |
| GGTAGCCCCACAATAACCAA+TGG | 0.593923 | 8_1:-72465293 | None:intergenic |
| AGTACTCCAGTTCCGTAGGA+CGG | 0.594592 | 8_1:-72464288 | None:intergenic |
| TATTGCCTCTAATACTCCCA+TGG | 0.595730 | 8_1:+72465208 | Msa1212530:CDS |
| GGCTACCTTCTTGAGTTCAA+GGG | 0.600400 | 8_1:+72465309 | Msa1212530:CDS |
| CATGGCAAGGATGAATATGT+TGG | 0.603928 | 8_1:-72465382 | None:intergenic |
| TCTTGAAAAGCTTATTCACA+AGG | 0.604641 | 8_1:+72464363 | Msa1212530:CDS |
| ATCTTACTCGTACAGATCCA+AGG | 0.609110 | 8_1:+72464492 | Msa1212530:CDS |
| GAAAAGTACTCCAGTTCCGT+AGG | 0.620724 | 8_1:-72464292 | None:intergenic |
| AGTAAAATGAAGCTTAAATG+GGG | 0.638242 | 8_1:+72465231 | Msa1212530:CDS |
| GGACGGGTTTCTGACCAGAT+GGG | 0.638285 | 8_1:-72464271 | None:intergenic |
| CAAACCCATTGGTTATTGTG+GGG | 0.643939 | 8_1:+72465288 | Msa1212530:CDS |
| GATACAGTAGCGCCTCATGT+AGG | 0.648328 | 8_1:-72464469 | None:intergenic |
| GTTGACGAATAATCATGGCA+AGG | 0.661270 | 8_1:-72465395 | None:intergenic |
| TCAAGGGCGATACATAGCAA+TGG | 0.674434 | 8_1:-72465526 | None:intergenic |
| TGGATGGGAATTCCTACATG+AGG | 0.677531 | 8_1:+72464457 | Msa1212530:CDS |
| GCAGAATTATGCAGTTGGGG+TGG | 0.678677 | 8_1:+72463402 | Msa1212530:CDS |
| GAACCAAACAAAGTATTGTG+CGG | 0.682686 | 8_1:-72465178 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAAAAATAAATTAA+GGG | - | chr8_1:72465677-72465696 | None:intergenic | 0.0% |
| !! | AAAAATATAAAAATAAATTA+AGG | - | chr8_1:72465678-72465697 | None:intergenic | 0.0% |
| !! | TACAAAATCAATAATTAAAA+AGG | - | chr8_1:72464727-72464746 | None:intergenic | 10.0% |
| !! | TTGAATAAGATAATAAATAA+GGG | + | chr8_1:72464852-72464871 | Msa1212530:intron | 10.0% |
| !! | NNNNNNNNTTGTTTGAGTAA+AGG | + | chr8_1:72463904-72463923 | Msa1212530:intron | 15.0% |
| !! | NNNNNNNTTGTTTGAGTAAA+GGG | + | chr8_1:72463905-72463924 | Msa1212530:intron | 15.0% |
| !! | ATAGGAATAGAATAAATTAT+AGG | - | chr8_1:72464224-72464243 | None:intergenic | 15.0% |
| !! | ATATATATGATAGAAATAGA+TGG | - | chr8_1:72464528-72464547 | None:intergenic | 15.0% |
| !! | TATCATATATATCTTCATTA+TGG | + | chr8_1:72464536-72464555 | Msa1212530:CDS | 15.0% |
| !! | ATCATATATATCTTCATTAT+GGG | + | chr8_1:72464537-72464556 | Msa1212530:CDS | 15.0% |
| !! | AATCAATAATTAAAAAGGAA+TGG | - | chr8_1:72464722-72464741 | None:intergenic | 15.0% |
| !! | TATTTGCAATAAATAGTTAA+GGG | - | chr8_1:72464822-72464841 | None:intergenic | 15.0% |
| !! | GTTGAATAAGATAATAAATA+AGG | + | chr8_1:72464851-72464870 | Msa1212530:intron | 15.0% |
| !!! | ATAATAAATAAGGGTATTAT+AGG | + | chr8_1:72464861-72464880 | Msa1212530:intron | 15.0% |
| !! | TTTATTTATGAATGTGTAAG+TGG | - | chr8_1:72463723-72463742 | None:intergenic | 20.0% |
| !! | ATATGTCATGAAATGTTTAT+TGG | - | chr8_1:72463778-72463797 | None:intergenic | 20.0% |
| !! | NNNNNNTTGTTTGAGTAAAG+GGG | + | chr8_1:72463906-72463925 | Msa1212530:intron | 20.0% |
| !!! | TTTTTTTTTCCTTCAGTAAA+AGG | + | chr8_1:72464062-72464081 | Msa1212530:intron | 20.0% |
| !! | CTATTTGCAATAAATAGTTA+AGG | - | chr8_1:72464823-72464842 | None:intergenic | 20.0% |
| !! | ATGAAAATATGTAGCAATAT+TGG | - | chr8_1:72464951-72464970 | None:intergenic | 20.0% |
| !!! | TGTTGATTAACTAGATTTAA+AGG | - | chr8_1:72465088-72465107 | None:intergenic | 20.0% |
| ! | CTTCATTAGAAATTTGATCA+TGG | - | chr8_1:72463579-72463598 | None:intergenic | 25.0% |
| ! | CAAACTTAATCTTCTCAAAT+TGG | - | chr8_1:72463984-72464003 | None:intergenic | 25.0% |
| ! | AAGACTAACAATCAAATGAA+AGG | - | chr8_1:72464009-72464028 | None:intergenic | 25.0% |
| !!! | ATTTGATTGTTAGTCTTGTT+TGG | + | chr8_1:72464012-72464031 | Msa1212530:intron | 25.0% |
| ! | TTATAGGATAAATCCTGAAA+TGG | - | chr8_1:72464208-72464227 | None:intergenic | 25.0% |
| ! | TTATTCTATTCCTATAATCC+TGG | + | chr8_1:72464229-72464248 | Msa1212530:CDS | 25.0% |
| !!! | AGCTTTTCAAGAAATTAAGT+GGG | - | chr8_1:72464355-72464374 | None:intergenic | 25.0% |
| !!! | AAGCTTTTCAAGAAATTAAG+TGG | - | chr8_1:72464356-72464375 | None:intergenic | 25.0% |
| ! | TACTTAACAAACCTTATTGA+AGG | - | chr8_1:72464690-72464709 | None:intergenic | 25.0% |
| ! | CAATAATTAAAAAGGAATGG+AGG | - | chr8_1:72464719-72464738 | None:intergenic | 25.0% |
| !!! | CTTTAAAACGACAACTAAAT+AGG | - | chr8_1:72464763-72464782 | None:intergenic | 25.0% |
| !! | AACTAGACTGTAACTTTTTA+TGG | - | chr8_1:72464903-72464922 | None:intergenic | 25.0% |
| ! | ATATTTGAGCAGAAATGTAT+TGG | + | chr8_1:72465117-72465136 | Msa1212530:intron | 25.0% |
| ! | GAGTAAAATGAAGCTTAAAT+GGG | + | chr8_1:72465230-72465249 | Msa1212530:CDS | 25.0% |
| ! | AGTAAAATGAAGCTTAAATG+GGG | + | chr8_1:72465231-72465250 | Msa1212530:CDS | 25.0% |
| ! | ATTATGTTGACGAATAATCA+TGG | - | chr8_1:72465403-72465422 | None:intergenic | 25.0% |
| ! | CTTTTCTCTGTTTCAATCTA+AGG | - | chr8_1:72463475-72463494 | None:intergenic | 30.0% |
| CTTAGATTGAAACAGAGAAA+AGG | + | chr8_1:72463473-72463492 | Msa1212530:intron | 30.0% | |
| ATGCATACGAAAGAAAAAGA+AGG | - | chr8_1:72463543-72463562 | None:intergenic | 30.0% | |
| TCGTATGCATATATCATGTA+TGG | + | chr8_1:72463553-72463572 | Msa1212530:intron | 30.0% | |
| AAAACTGAGAGAGAAGTAAA+AGG | - | chr8_1:72463944-72463963 | None:intergenic | 30.0% | |
| ! | CATTTTACACCTTTTACTGA+AGG | - | chr8_1:72464074-72464093 | None:intergenic | 30.0% |
| ! | ATGTGTTACAATCAGCTTTT+TGG | + | chr8_1:72464168-72464187 | Msa1212530:CDS | 30.0% |
| !! | TTACAATCAGCTTTTTGGTA+TGG | + | chr8_1:72464173-72464192 | Msa1212530:CDS | 30.0% |
| !! | GCTTTTCAAGAAATTAAGTG+GGG | - | chr8_1:72464354-72464373 | None:intergenic | 30.0% |
| TCTTGAAAAGCTTATTCACA+AGG | + | chr8_1:72464363-72464382 | Msa1212530:CDS | 30.0% | |
| !!! | TTCTGATTTTTAGCTTTGCA+CGG | + | chr8_1:72464621-72464640 | Msa1212530:CDS | 30.0% |
| TACATTTCTGCTCAAATATG+AGG | - | chr8_1:72465116-72465135 | None:intergenic | 30.0% | |
| ! | TAAGCTTCATTTTACTCCAT+GGG | - | chr8_1:72465227-72465246 | None:intergenic | 30.0% |
| ! | TTAAGCTTCATTTTACTCCA+TGG | - | chr8_1:72465228-72465247 | None:intergenic | 30.0% |
| GGAGTAAAATGAAGCTTAAA+TGG | + | chr8_1:72465229-72465248 | Msa1212530:CDS | 30.0% | |
| ! | AAAATGTCTTTTTACAGCTC+TGG | + | chr8_1:72465334-72465353 | Msa1212530:CDS | 30.0% |
| ! | AAATGTCTTTTTACAGCTCT+GGG | + | chr8_1:72465335-72465354 | Msa1212530:CDS | 30.0% |
| ! | TTCAAGTTTAGTTACGTGTT+TGG | - | chr8_1:72465463-72465482 | None:intergenic | 30.0% |
| TAAACTTGAATGAGTAACCT+TGG | + | chr8_1:72465473-72465492 | Msa1212530:exon | 30.0% | |
| ATTGAAACAGAGAAAAGGCA+AGG | + | chr8_1:72463478-72463497 | Msa1212530:intron | 35.0% | |
| TTGAAACAGAGAAAAGGCAA+GGG | + | chr8_1:72463479-72463498 | Msa1212530:intron | 35.0% | |
| ! | GCTTTGTTCTCTAATTTCAG+TGG | - | chr8_1:72463521-72463540 | None:intergenic | 35.0% |
| AGGGGAATAAGAAGGAAAAA+GGG | - | chr8_1:72464135-72464154 | None:intergenic | 35.0% | |
| AAGGGGAATAAGAAGGAAAA+AGG | - | chr8_1:72464136-72464155 | None:intergenic | 35.0% | |
| ! | TTTTTCCTTCTTATTCCCCT+TGG | + | chr8_1:72464135-72464154 | Msa1212530:intron | 35.0% |
| AAAGCTTATTCACAAGGAAC+AGG | + | chr8_1:72464369-72464388 | Msa1212530:CDS | 35.0% | |
| !! | TTGGTTTTCCTCATATGTAC+TGG | + | chr8_1:72464416-72464435 | Msa1212530:CDS | 35.0% |
| ATCCATATAAGCAGTAGAAC+AGG | - | chr8_1:72464442-72464461 | None:intergenic | 35.0% | |
| TGTTCTACTGCTTATATGGA+TGG | + | chr8_1:72464441-72464460 | Msa1212530:CDS | 35.0% | |
| GTTCTACTGCTTATATGGAT+GGG | + | chr8_1:72464442-72464461 | Msa1212530:CDS | 35.0% | |
| TGGGAATGATATTTCAGTTG+TGG | + | chr8_1:72464556-72464575 | Msa1212530:CDS | 35.0% | |
| AACCAAAAACTGTGGCAAAA+AGG | - | chr8_1:72464594-72464613 | None:intergenic | 35.0% | |
| !!! | TCTGATTTTTAGCTTTGCAC+GGG | + | chr8_1:72464622-72464641 | Msa1212530:CDS | 35.0% |
| ATGATACAGTCTGCACAAAT+AGG | - | chr8_1:72464661-72464680 | None:intergenic | 35.0% | |
| ATCATTTGTGGCCTTCAATA+AGG | + | chr8_1:72464676-72464695 | Msa1212530:CDS | 35.0% | |
| CACACACACACATATACATA+TGG | + | chr8_1:72465055-72465074 | Msa1212530:intron | 35.0% | |
| CACACATATACATATGGCAA+CGG | + | chr8_1:72465061-72465080 | Msa1212530:intron | 35.0% | |
| TTACCGCACAATACTTTGTT+TGG | + | chr8_1:72465175-72465194 | Msa1212530:CDS | 35.0% | |
| !! | GAACCAAACAAAGTATTGTG+CGG | - | chr8_1:72465181-72465200 | None:intergenic | 35.0% |
| AAAATGAAGCTTAAATGGGG+TGG | + | chr8_1:72465234-72465253 | Msa1212530:CDS | 35.0% | |
| ! | GATTGTCTTGCATTCTTTTG+TGG | + | chr8_1:72465256-72465275 | Msa1212530:CDS | 35.0% |
| ! | TCTTGCATTCTTTTGTGGAT+CGG | + | chr8_1:72465261-72465280 | Msa1212530:CDS | 35.0% |
| ! | TCAAACCCATTGGTTATTGT+GGG | + | chr8_1:72465287-72465306 | Msa1212530:CDS | 35.0% |
| ! | TTTTACCCTTGAACTCAAGA+AGG | - | chr8_1:72465317-72465336 | None:intergenic | 35.0% |
| ! | TTTAGTTACGTGTTTGGAGT+GGG | - | chr8_1:72465457-72465476 | None:intergenic | 35.0% |
| CCAAAATTGAAGCATGTCAA+GGG | - | chr8_1:72465545-72465564 | None:intergenic | 35.0% | |
| TCCAAAATTGAAGCATGTCA+AGG | - | chr8_1:72465546-72465565 | None:intergenic | 35.0% | |
| ! | TGACATGCTTCAATTTTGGA+AGG | + | chr8_1:72465546-72465565 | Msa1212530:three_prime_UTR | 35.0% |
| TTTGGAAGGTTAACAATGCA+TGG | + | chr8_1:72465560-72465579 | Msa1212530:three_prime_UTR | 35.0% | |
| GACTACAACAACTGTTATCT+TGG | + | chr8_1:72465587-72465606 | Msa1212530:three_prime_UTR | 35.0% | |
| AACTGTTATCTTGGTGAAAC+TGG | + | chr8_1:72465596-72465615 | Msa1212530:three_prime_UTR | 35.0% | |
| TTGCTGCAGAATTATGCAGT+TGG | + | chr8_1:72463397-72463416 | Msa1212530:CDS | 40.0% | |
| TGCTGCAGAATTATGCAGTT+GGG | + | chr8_1:72463398-72463417 | Msa1212530:CDS | 40.0% | |
| TTGGTTGACACAGCAAAGAA+AGG | + | chr8_1:72464031-72464050 | Msa1212530:intron | 40.0% | |
| GGGAATAAGAAGGAAAAAGG+GGG | - | chr8_1:72464133-72464152 | None:intergenic | 40.0% | |
| GGGGAATAAGAAGGAAAAAG+GGG | - | chr8_1:72464134-72464153 | None:intergenic | 40.0% | |
| ACACATTACCTGCAAACCAA+GGG | - | chr8_1:72464154-72464173 | None:intergenic | 40.0% | |
| AACACATTACCTGCAAACCA+AGG | - | chr8_1:72464155-72464174 | None:intergenic | 40.0% | |
| !! | ATGGACTTGTTGTCCATTTC+AGG | + | chr8_1:72464192-72464211 | Msa1212530:CDS | 40.0% |
| GGATCAAGAACCAGGATTAT+AGG | - | chr8_1:72464242-72464261 | None:intergenic | 40.0% | |
| !! | GAACTGGAGTACTTTTCAGA+AGG | + | chr8_1:72464298-72464317 | Msa1212530:CDS | 40.0% |
| AACAAGCAATTCCTGTCTTC+GGG | - | chr8_1:72464329-72464348 | None:intergenic | 40.0% | |
| GAACAAGCAATTCCTGTCTT+CGG | - | chr8_1:72464330-72464349 | None:intergenic | 40.0% | |
| ACAAGGAACAGGATGATGTT+TGG | + | chr8_1:72464380-72464399 | Msa1212530:CDS | 40.0% | |
| ATCTTACTCGTACAGATCCA+AGG | + | chr8_1:72464492-72464511 | Msa1212530:CDS | 40.0% | |
| ! | CTCCTTTTTGCCACAGTTTT+TGG | + | chr8_1:72464589-72464608 | Msa1212530:CDS | 40.0% |
| ACAAGCTGAACCAAAAACTG+TGG | - | chr8_1:72464602-72464621 | None:intergenic | 40.0% | |
| GTCTGCACAAATAGGCAAAA+TGG | - | chr8_1:72464653-72464672 | None:intergenic | 40.0% | |
| TGTGCAGACTGTATCATTTG+TGG | + | chr8_1:72464664-72464683 | Msa1212530:CDS | 40.0% | |
| ATAAACAGAGATCAGATGCG+TGG | - | chr8_1:72465144-72465163 | None:intergenic | 40.0% | |
| CTGATCTCTGTTTATCTTGC+AGG | + | chr8_1:72465149-72465168 | Msa1212530:intron | 40.0% | |
| TATTGCCTCTAATACTCCCA+TGG | + | chr8_1:72465208-72465227 | Msa1212530:CDS | 40.0% | |
| !! | TTACTCCATGGGAGTATTAG+AGG | - | chr8_1:72465216-72465235 | None:intergenic | 40.0% |
| ! | CTCAAACCCATTGGTTATTG+TGG | + | chr8_1:72465286-72465305 | Msa1212530:CDS | 40.0% |
| ! | CAAACCCATTGGTTATTGTG+GGG | + | chr8_1:72465288-72465307 | Msa1212530:CDS | 40.0% |
| CATGGCAAGGATGAATATGT+TGG | - | chr8_1:72465385-72465404 | None:intergenic | 40.0% | |
| GTTGACGAATAATCATGGCA+AGG | - | chr8_1:72465398-72465417 | None:intergenic | 40.0% | |
| GTTTAGTTACGTGTTTGGAG+TGG | - | chr8_1:72465458-72465477 | None:intergenic | 40.0% | |
| TGAAACTCATTCACAGACCA+AGG | - | chr8_1:72465493-72465512 | None:intergenic | 40.0% | |
| ! | CCCTTGACATGCTTCAATTT+TGG | + | chr8_1:72465542-72465561 | Msa1212530:three_prime_UTR | 40.0% |
| GCTGCAGAATTATGCAGTTG+GGG | + | chr8_1:72463399-72463418 | Msa1212530:CDS | 45.0% | |
| GCAAACCAAGGGGAATAAGA+AGG | - | chr8_1:72464143-72464162 | None:intergenic | 45.0% | |
| !! | TCTTATTCCCCTTGGTTTGC+AGG | + | chr8_1:72464143-72464162 | Msa1212530:intron | 45.0% |
| CACATTACCTGCAAACCAAG+GGG | - | chr8_1:72464153-72464172 | None:intergenic | 45.0% | |
| AGAAGTTCGGATCAAGAACC+AGG | - | chr8_1:72464250-72464269 | None:intergenic | 45.0% | |
| TGACCAGATGGGAAGAAGTT+CGG | - | chr8_1:72464263-72464282 | None:intergenic | 45.0% | |
| !! | GAAAAGTACTCCAGTTCCGT+AGG | - | chr8_1:72464295-72464314 | None:intergenic | 45.0% |
| GAACAGGATGATGTTTGGAC+TGG | + | chr8_1:72464385-72464404 | Msa1212530:CDS | 45.0% | |
| !! | ATGATGTTTGGACTGGTCTC+AGG | + | chr8_1:72464392-72464411 | Msa1212530:CDS | 45.0% |
| AGAACAGGCCAGTACATATG+AGG | - | chr8_1:72464427-72464446 | None:intergenic | 45.0% | |
| GGCCTGTTCTACTGCTTATA+TGG | + | chr8_1:72464437-72464456 | Msa1212530:CDS | 45.0% | |
| TGGATGGGAATTCCTACATG+AGG | + | chr8_1:72464457-72464476 | Msa1212530:CDS | 45.0% | |
| TAGATGGAGAAGTTGTGCCT+TGG | - | chr8_1:72464512-72464531 | None:intergenic | 45.0% | |
| GTAGCCCCACAATAACCAAT+GGG | - | chr8_1:72465295-72465314 | None:intergenic | 45.0% | |
| GGCTACCTTCTTGAGTTCAA+GGG | + | chr8_1:72465309-72465328 | Msa1212530:CDS | 45.0% | |
| GGCGATACATAGCAATGGTA+AGG | - | chr8_1:72465524-72465543 | None:intergenic | 45.0% | |
| TCAAGGGCGATACATAGCAA+TGG | - | chr8_1:72465529-72465548 | None:intergenic | 45.0% | |
| GCAGAATTATGCAGTTGGGG+TGG | + | chr8_1:72463402-72463421 | Msa1212530:CDS | 50.0% | |
| ATGCAGTTGGGGTGGTTAGA+AGG | + | chr8_1:72463410-72463429 | Msa1212530:intron | 50.0% | |
| GTTGGGGTGGTTAGAAGGAA+AGG | + | chr8_1:72463415-72463434 | Msa1212530:intron | 50.0% | |
| GATCCGAACTTCTTCCCATC+TGG | + | chr8_1:72464257-72464276 | Msa1212530:CDS | 50.0% | |
| AGTACTCCAGTTCCGTAGGA+CGG | - | chr8_1:72464291-72464310 | None:intergenic | 50.0% | |
| !! | GTTTGGACTGGTCTCAGGAT+TGG | + | chr8_1:72464397-72464416 | Msa1212530:CDS | 50.0% |
| GATACAGTAGCGCCTCATGT+AGG | - | chr8_1:72464472-72464491 | None:intergenic | 50.0% | |
| GGTAGCCCCACAATAACCAA+TGG | - | chr8_1:72465296-72465315 | None:intergenic | 50.0% | |
| GGGCTACCTTCTTGAGTTCA+AGG | + | chr8_1:72465308-72465327 | Msa1212530:CDS | 50.0% | |
| ! | GGACGGGTTTCTGACCAGAT+GGG | - | chr8_1:72464274-72464293 | None:intergenic | 55.0% |
| ! | AGGACGGGTTTCTGACCAGA+TGG | - | chr8_1:72464275-72464294 | None:intergenic | 55.0% |
| CTGGTCAGAAACCCGTCCTA+CGG | + | chr8_1:72464276-72464295 | Msa1212530:CDS | 55.0% | |
| AGAAACCCGTCCTACGGAAC+TGG | + | chr8_1:72464282-72464301 | Msa1212530:CDS | 55.0% | |
| GTACTCCAGTTCCGTAGGAC+GGG | - | chr8_1:72464290-72464309 | None:intergenic | 55.0% | |
| AGAAGGAGAGACCCGAAGAC+AGG | + | chr8_1:72464315-72464334 | Msa1212530:CDS | 55.0% | |
| GGATCGGAGCTCAAACCCAT+TGG | + | chr8_1:72465277-72465296 | Msa1212530:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 72463393 | 72465856 | 72463393 | ID=Msa1212530;Name=Msa1212530 |
| chr8_1 | mRNA | 72463393 | 72465856 | 72463393 | ID=Msa1212530-mRNA-1;Parent=Msa1212530;Name=Msa1212530-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.33|0.66|1|1|3|371|292 |
| chr8_1 | exon | 72463393 | 72463423 | 72463393 | ID=Msa1212530-mRNA-1:exon:24431;Parent=Msa1212530-mRNA-1 |
| chr8_1 | exon | 72464165 | 72464697 | 72464165 | ID=Msa1212530-mRNA-1:exon:24432;Parent=Msa1212530-mRNA-1 |
| chr8_1 | exon | 72465171 | 72465856 | 72465171 | ID=Msa1212530-mRNA-1:exon:24433;Parent=Msa1212530-mRNA-1 |
| chr8_1 | CDS | 72463393 | 72463423 | 72463393 | ID=Msa1212530-mRNA-1:cds;Parent=Msa1212530-mRNA-1 |
| chr8_1 | CDS | 72464165 | 72464697 | 72464165 | ID=Msa1212530-mRNA-1:cds;Parent=Msa1212530-mRNA-1 |
| chr8_1 | CDS | 72465171 | 72465485 | 72465171 | ID=Msa1212530-mRNA-1:cds;Parent=Msa1212530-mRNA-1 |
| chr8_1 | three_prime_UTR | 72465486 | 72465856 | 72465486 | ID=Msa1212530-mRNA-1:three_prime_utr;Parent=Msa1212530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
