AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254620 MtrunA17_Chr8g0371661 99.459 185 1 0 1 185 1 185 2.05e-135 385
Msa1254620 MtrunA17_Chr5g0405681 87.568 185 23 0 1 185 1 185 3.62e-118 342
Msa1254620 MtrunA17_Chr8g0371921 88.372 43 5 0 184 226 323 365 1.58e-16 77.4
Msa1254620 MtrunA17_Chr8g0371931 88.372 43 5 0 184 226 323 365 2.31e-16 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254620 AT4G38630.1 77.957 186 40 1 1 185 1 186 6.09e-107 313

Find 60 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGCTACACTTATCATTA+TGG 0.241037 8_2:+52707748 Msa1254620:intron
TCTTCCTCAGGTCTAGAAAT+AGG 0.241655 8_2:+52709192 Msa1254620:intron
GTCTACCCCTACCAGTGATT+TGG 0.242788 8_2:+52708075 Msa1254620:CDS
CTCTGTCGGATGTACTTATA+AGG 0.280586 8_2:+52709617 Msa1254620:CDS
AAGAATCTCATTCAATGGTT+TGG 0.305842 8_2:-52710374 None:intergenic
AAACCTAGCTGCTGCCATTC+AGG 0.316711 8_2:+52709224 Msa1254620:CDS
TCTACCCCTACCAGTGATTT+GGG 0.334303 8_2:+52708076 Msa1254620:CDS
CAGTGATTTGGGCAAAATCT+TGG 0.352937 8_2:+52708087 Msa1254620:CDS
AGAATCTCATTCAATGGTTT+GGG 0.358688 8_2:-52710373 None:intergenic
CAAAACTCGAACTCCCTTCC+CGG 0.405445 8_2:-52708053 None:intergenic
AGTACATCCGACAGAGCATT+TGG 0.417933 8_2:-52709610 None:intergenic
TGCCATTCAGGTGGCACAGT+TGG 0.425490 8_2:+52709236 Msa1254620:CDS
AGTGATTTGGGCAAAATCTT+GGG 0.427099 8_2:+52708088 Msa1254620:CDS
AAGAAAATGTTGGAGATGAT+TGG 0.430493 8_2:+52709445 Msa1254620:CDS
GACACTGTTAGTCTTATTTG+CGG 0.431330 8_2:+52707830 Msa1254620:CDS
TAAGCAAGAATCTCATTCAA+TGG 0.462100 8_2:-52710379 None:intergenic
AGATCAGAGAATTGAATTGA+AGG 0.473612 8_2:-52707544 None:intergenic
TGAGGGGAAGACAGAGAAGC+TGG 0.484092 8_2:+52709525 Msa1254620:CDS
GCACTTGACATTGTCAACTT+TGG 0.484613 8_2:+52709493 Msa1254620:CDS
TATTTGCGGTGCTAAAACTC+AGG 0.487975 8_2:+52707844 Msa1254620:CDS
TCGAACTCCCTTCCCGGCCA+TGG 0.492622 8_2:-52708047 None:intergenic
TCTAATCCTGAAAATACTGT+TGG 0.499375 8_2:+52708016 Msa1254620:CDS
ACCTGGTCCAAATGCTCTGT+CGG 0.502391 8_2:+52709603 Msa1254620:CDS
GTTACCTCGAGCACCATTGT+TGG 0.511678 8_2:-52707623 None:intergenic
CAAGCATGAGAAGAAAATGT+TGG 0.513604 8_2:+52709435 Msa1254620:CDS
AGCCAACTGTGCCACCTGAA+TGG 0.521804 8_2:-52709238 None:intergenic
GTTATGACCATGGCCGGGAA+GGG 0.531594 8_2:+52708040 Msa1254620:CDS
AAAATCTTGGGTTGTATGCA+TGG 0.533026 8_2:+52708100 Msa1254620:CDS
GCAAGGACCTTGAGATTGCT+AGG 0.538193 8_2:+52710290 Msa1254620:CDS
TTTCTTCAACTTTCCAACAA+TGG 0.539759 8_2:+52707610 Msa1254620:exon
ATTGAAGGTGCTTGCGAAGG+AGG 0.539968 8_2:-52707529 None:intergenic
CACATGGTTCATGTTCCACC+TGG 0.545946 8_2:+52709586 Msa1254620:CDS
CACAGTTGGCTCTTAAGCAT+CGG 0.549170 8_2:+52709250 Msa1254620:CDS
GTTGGAGTTATGACCATGGC+CGG 0.550710 8_2:+52708034 Msa1254620:CDS
AGAATAAGAAGCAGCAGCAA+AGG 0.554704 8_2:+52709274 Msa1254620:CDS
CCACCTGAATGGCAGCAGCT+AGG 0.557823 8_2:-52709227 None:intergenic
TTTGCCCAAATCACTGGTAG+GGG 0.564614 8_2:-52708080 None:intergenic
CATTATTGTTTACAGCTGCA+AGG 0.566431 8_2:-52709555 None:intergenic
TAGGATGAAGAAGCTGGCTA+AGG 0.570928 8_2:+52710309 Msa1254620:CDS
AGTTATGACCATGGCCGGGA+AGG 0.571550 8_2:+52708039 Msa1254620:CDS
TGAATTGAAGGTGCTTGCGA+AGG 0.573228 8_2:-52707532 None:intergenic
CAACTTTGGAGAAGAAGATG+AGG 0.586931 8_2:+52709507 Msa1254620:CDS
GATTGCTAGGATGAAGAAGC+TGG 0.588175 8_2:+52710303 Msa1254620:CDS
CTTTCCAACAATGGTGCTCG+AGG 0.591593 8_2:+52707619 Msa1254620:exon
AACTTTGGAGAAGAAGATGA+GGG 0.598180 8_2:+52709508 Msa1254620:CDS
TTGGAGTTATGACCATGGCC+GGG 0.605725 8_2:+52708035 Msa1254620:CDS
AACTCTGAACATATGCGTAA+CGG 0.612049 8_2:+52707773 Msa1254620:CDS
TCCGACAGAGCATTTGGACC+AGG 0.615302 8_2:-52709604 None:intergenic
AGAACTTAGGGACCTACAGA+AGG 0.616594 8_2:+52710339 Msa1254620:CDS
TCTTCATCCTAGCAATCTCA+AGG 0.621342 8_2:-52710297 None:intergenic
CAATAATGATAGTAGCCACA+TGG 0.640045 8_2:+52709570 Msa1254620:CDS
GTATAGGAGGAAAATGAGCA+AGG 0.641286 8_2:+52710273 Msa1254620:intron
CCTAGCTGCTGCCATTCAGG+TGG 0.642995 8_2:+52709227 Msa1254620:CDS
GATTGAGCTTGAAATCGAGA+AGG 0.652006 8_2:-52707806 None:intergenic
GCAAATAAGACTAACAGTGT+CGG 0.657951 8_2:-52707828 None:intergenic
GACAGAGCATTTGGACCAGG+TGG 0.676689 8_2:-52709601 None:intergenic
TACTGTTGGAGTTATGACCA+TGG 0.686072 8_2:+52708030 Msa1254620:CDS
TCCTCAGGTCTAGAAATAGG+CGG 0.696316 8_2:+52709195 Msa1254620:intron
ACTTTGGAGAAGAAGATGAG+GGG 0.698383 8_2:+52709509 Msa1254620:CDS
CAGGTGGAACATGAACCATG+TGG 0.807488 8_2:-52709585 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTAATCTTTGATTTTAAT+AGG + chr8_2:52707730-52707749 Msa1254620:intron 15.0%
!!! TGGTTTTTATGTTTAATTTT+AGG + chr8_2:52707943-52707962 Msa1254620:intron 15.0%
!!! TTATGTTTAATTTTAGGTTT+AGG + chr8_2:52707949-52707968 Msa1254620:intron 15.0%
!!! TATGTTTAATTTTAGGTTTA+GGG + chr8_2:52707950-52707969 Msa1254620:intron 15.0%
!! AAGAAAAAAAAAAAACACTT+GGG - chr8_2:52708509-52708528 None:intergenic 15.0%
!! AAAGAAAAAAAAAAAACACT+TGG - chr8_2:52708510-52708529 None:intergenic 15.0%
!! AAAGGCTATATATATATATA+AGG - chr8_2:52710001-52710020 None:intergenic 15.0%
!! TTATATATATATATAGCCTT+TGG + chr8_2:52710000-52710019 Msa1254620:intron 15.0%
!! AGATTAGAGGAAAATAAAAT+CGG - chr8_2:52707653-52707672 None:intergenic 20.0%
!!! TTGATTCTAAGCAATTTTTT+AGG + chr8_2:52707893-52707912 Msa1254620:intron 20.0%
!!! TGATTCTAAGCAATTTTTTA+GGG + chr8_2:52707894-52707913 Msa1254620:intron 20.0%
!!! TTTTTTTCCTCTTAAATCTT+TGG + chr8_2:52708128-52708147 Msa1254620:intron 20.0%
!!! CTTTATTTTATCTTTCGATA+TGG - chr8_2:52708313-52708332 None:intergenic 20.0%
!! AGAAAAAAAAAAAACACTTG+GGG - chr8_2:52708508-52708527 None:intergenic 20.0%
!! AAATGAATAAATAACACTTG+GGG - chr8_2:52708631-52708650 None:intergenic 20.0%
!! CAAATGAATAAATAACACTT+GGG - chr8_2:52708632-52708651 None:intergenic 20.0%
!! ACAAATGAATAAATAACACT+TGG - chr8_2:52708633-52708652 None:intergenic 20.0%
!! TAAGTAAATTCTATGTGAAT+TGG + chr8_2:52708674-52708693 Msa1254620:intron 20.0%
!!! TCTTTTTCTAAATTTGTACA+CGG + chr8_2:52709671-52709690 Msa1254620:intron 20.0%
!! ATGAAAGATTTGACATTTAA+AGG - chr8_2:52709922-52709941 None:intergenic 20.0%
!! ATATATATATATAAGGTGGA+TGG - chr8_2:52709994-52710013 None:intergenic 20.0%
!! NNNNNNNNNNATACTAGAGG+GGG - chr8_2:52710124-52710143 None:intergenic 20.0%
!! NNNNNNNNNGAAATCTGTGA+TGG + chr8_2:52710225-52710244 Msa1254620:intron 20.0%
! TAGAATCAAGAATTAAGCAT+TGG - chr8_2:52707882-52707901 None:intergenic 25.0%
! TATATATTGCATTTCAGACT+TGG + chr8_2:52707923-52707942 Msa1254620:intron 25.0%
!!! GCTTATTTTTTAAGTTCTCT+AGG - chr8_2:52708378-52708397 None:intergenic 25.0%
! CATTTGTACAATTAAGTACA+AGG + chr8_2:52708646-52708665 Msa1254620:intron 25.0%
!! TCTATGTGAATTGGATTTTT+AGG + chr8_2:52708683-52708702 Msa1254620:intron 25.0%
!! ATTGACTTATTTGAGCTTAT+CGG + chr8_2:52708748-52708767 Msa1254620:intron 25.0%
!! ATTGTTTTCATAAGCTATCA+TGG - chr8_2:52708866-52708885 None:intergenic 25.0%
!! ATTGAGTTGTTTATCCAAAT+AGG + chr8_2:52708933-52708952 Msa1254620:intron 25.0%
! TAAAATGATAAGAAGCCAAA+AGG - chr8_2:52708973-52708992 None:intergenic 25.0%
!! TCTTATCATTTTAGATGCAT+CGG + chr8_2:52708980-52708999 Msa1254620:intron 25.0%
! AGAAATATTACACTTTCATC+TGG + chr8_2:52709053-52709072 Msa1254620:intron 25.0%
! GAAATATTACACTTTCATCT+GGG + chr8_2:52709054-52709073 Msa1254620:intron 25.0%
! AAATATTACACTTTCATCTG+GGG + chr8_2:52709055-52709074 Msa1254620:intron 25.0%
!!! TTTATTCATTTTTCTTCCTC+AGG + chr8_2:52709180-52709199 Msa1254620:intron 25.0%
!! AAAGCACCAAATTAGATTAT+GGG - chr8_2:52709402-52709421 None:intergenic 25.0%
!! TAAAGCACCAAATTAGATTA+TGG - chr8_2:52709403-52709422 None:intergenic 25.0%
! AAAAGAGTTAGAAGAGAAAT+AGG - chr8_2:52709793-52709812 None:intergenic 25.0%
!! ATTTCTCTTCTAACTCTTTT+TGG + chr8_2:52709793-52709812 Msa1254620:intron 25.0%
! GGCTATATATATATATAAGG+TGG - chr8_2:52709998-52710017 None:intergenic 25.0%
! NNNNNNNNNATACTAGAGGG+GGG - chr8_2:52710123-52710142 None:intergenic 25.0%
!!! TTACTTTTGCTGAAATGTAT+AGG + chr8_2:52710257-52710276 Msa1254620:intron 25.0%
! TAAGGAAGAAAAAGAACTTA+GGG + chr8_2:52710327-52710346 Msa1254620:CDS 25.0%
AGATCAGAGAATTGAATTGA+AGG - chr8_2:52707547-52707566 None:intergenic 30.0%
TTTCTTCAACTTTCCAACAA+TGG + chr8_2:52707610-52707629 Msa1254620:exon 30.0%
ATTGAATCGATGAAGATTAG+AGG - chr8_2:52707666-52707685 None:intergenic 30.0%
ATAGGCTACACTTATCATTA+TGG + chr8_2:52707748-52707767 Msa1254620:intron 30.0%
!! TCAAGAATTAAGCATTGGAT+TGG - chr8_2:52707877-52707896 None:intergenic 30.0%
TCTAATCCTGAAAATACTGT+TGG + chr8_2:52708016-52708035 Msa1254620:CDS 30.0%
! ATAACTCCAACAGTATTTTC+AGG - chr8_2:52708025-52708044 None:intergenic 30.0%
CTAGTAGATAAGCTCAAATA+AGG + chr8_2:52708592-52708611 Msa1254620:intron 30.0%
!!! TGAATTGGATTTTTAGGTTG+TGG + chr8_2:52708689-52708708 Msa1254620:intron 30.0%
AAAGAAACTATGGTCCTATT+TGG - chr8_2:52708950-52708969 None:intergenic 30.0%
GAAACAAGTTTACATCGTAT+TGG + chr8_2:52709136-52709155 Msa1254620:intron 30.0%
AAGAAAATGTTGGAGATGAT+TGG + chr8_2:52709445-52709464 Msa1254620:CDS 30.0%
GATGTACTTATAAGGTTTGT+GGG + chr8_2:52709625-52709644 Msa1254620:intron 30.0%
!!! CTTCTAAAATTTTACCGAAC+AGG - chr8_2:52709720-52709739 None:intergenic 30.0%
! TTTGACATTTAAAGGAGTAC+TGG - chr8_2:52709914-52709933 None:intergenic 30.0%
CTAAGGAAGAAAAAGAACTT+AGG + chr8_2:52710326-52710345 Msa1254620:CDS 30.0%
AGAATCTCATTCAATGGTTT+GGG - chr8_2:52710376-52710395 None:intergenic 30.0%
AAGAATCTCATTCAATGGTT+TGG - chr8_2:52710377-52710396 None:intergenic 30.0%
TAAGCAAGAATCTCATTCAA+TGG - chr8_2:52710382-52710401 None:intergenic 30.0%
AGAGGAAAATAAAATCGGAG+AGG - chr8_2:52707648-52707667 None:intergenic 35.0%
CACTGCAATTCGATCAATTA+GGG + chr8_2:52707691-52707710 Msa1254620:intron 35.0%
AACTCTGAACATATGCGTAA+CGG + chr8_2:52707773-52707792 Msa1254620:CDS 35.0%
GCAAATAAGACTAACAGTGT+CGG - chr8_2:52707831-52707850 None:intergenic 35.0%
!! GACACTGTTAGTCTTATTTG+CGG + chr8_2:52707830-52707849 Msa1254620:CDS 35.0%
! AGTGATTTGGGCAAAATCTT+GGG + chr8_2:52708088-52708107 Msa1254620:CDS 35.0%
! AAAATCTTGGGTTGTATGCA+TGG + chr8_2:52708100-52708119 Msa1254620:CDS 35.0%
!! GAGAGTACCAAAGATTTAAG+AGG - chr8_2:52708138-52708157 None:intergenic 35.0%
ATAAGTGCTCTATGCTATGT+TGG + chr8_2:52708162-52708181 Msa1254620:intron 35.0%
AGGAAATCTGGTTACAATGT+AGG + chr8_2:52708185-52708204 Msa1254620:intron 35.0%
AATCTGGTTACAATGTAGGA+TGG + chr8_2:52708189-52708208 Msa1254620:intron 35.0%
GCTATAAGCTGCAAATTATG+CGG - chr8_2:52708249-52708268 None:intergenic 35.0%
CTCAAATAAGCCAATCCAAA+TGG + chr8_2:52708481-52708500 Msa1254620:intron 35.0%
! GACCATAGTTTCTTTCCTTT+TGG + chr8_2:52708955-52708974 Msa1254620:intron 35.0%
AGCCAAAAGGAAAGAAACTA+TGG - chr8_2:52708960-52708979 None:intergenic 35.0%
! CAAAGGATTGTTGTCTTTTG+TGG + chr8_2:52709291-52709310 Msa1254620:CDS 35.0%
ACCAAATTAGATTATGGGAG+GGG - chr8_2:52709397-52709416 None:intergenic 35.0%
CACCAAATTAGATTATGGGA+GGG - chr8_2:52709398-52709417 None:intergenic 35.0%
! ATTTTCTTCTCATGCTTGAC+AGG - chr8_2:52709433-52709452 None:intergenic 35.0%
CAAGCATGAGAAGAAAATGT+TGG + chr8_2:52709435-52709454 Msa1254620:CDS 35.0%
! AACTTTGGAGAAGAAGATGA+GGG + chr8_2:52709508-52709527 Msa1254620:CDS 35.0%
CATTATTGTTTACAGCTGCA+AGG - chr8_2:52709558-52709577 None:intergenic 35.0%
CAATAATGATAGTAGCCACA+TGG + chr8_2:52709570-52709589 Msa1254620:CDS 35.0%
GGATGTACTTATAAGGTTTG+TGG + chr8_2:52709624-52709643 Msa1254620:intron 35.0%
CAGGAAATCCCAATTCAAAT+GGG - chr8_2:52709701-52709720 None:intergenic 35.0%
ACAGGAAATCCCAATTCAAA+TGG - chr8_2:52709702-52709721 None:intergenic 35.0%
TTGAATTGGGATTTCCTGTT+CGG + chr8_2:52709703-52709722 Msa1254620:intron 35.0%
GAAGAATTCATGGCTATTTG+GGG - chr8_2:52709892-52709911 None:intergenic 35.0%
GGAAGAATTCATGGCTATTT+GGG - chr8_2:52709893-52709912 None:intergenic 35.0%
TGGAAGAATTCATGGCTATT+TGG - chr8_2:52709894-52709913 None:intergenic 35.0%
AATGTAGCAAACAACTCCAA+AGG - chr8_2:52710019-52710038 None:intergenic 35.0%
! TGATTTTTACATCCGAGTCT+TGG + chr8_2:52710040-52710059 Msa1254620:intron 35.0%
! GATTTTTACATCCGAGTCTT+GGG + chr8_2:52710041-52710060 Msa1254620:intron 35.0%
! CTTTTGCTGAAATGTATAGG+AGG + chr8_2:52710260-52710279 Msa1254620:intron 35.0%
AATTGATCGAATTGCAGTGG+AGG - chr8_2:52707690-52707709 None:intergenic 40.0%
CCTAATTGATCGAATTGCAG+TGG - chr8_2:52707693-52707712 None:intergenic 40.0%
CCACTGCAATTCGATCAATT+AGG + chr8_2:52707690-52707709 Msa1254620:intron 40.0%
GATTGAGCTTGAAATCGAGA+AGG - chr8_2:52707809-52707828 None:intergenic 40.0%
! TATTTGCGGTGCTAAAACTC+AGG + chr8_2:52707844-52707863 Msa1254620:CDS 40.0%
TACTGTTGGAGTTATGACCA+TGG + chr8_2:52708030-52708049 Msa1254620:CDS 40.0%
! TTTTGCCCAAATCACTGGTA+GGG - chr8_2:52708084-52708103 None:intergenic 40.0%
! ATTTTGCCCAAATCACTGGT+AGG - chr8_2:52708085-52708104 None:intergenic 40.0%
! CAAGATTTTGCCCAAATCAC+TGG - chr8_2:52708089-52708108 None:intergenic 40.0%
! CAGTGATTTGGGCAAAATCT+TGG + chr8_2:52708087-52708106 Msa1254620:CDS 40.0%
ATGCTATGTTGGAGGAAATC+TGG + chr8_2:52708173-52708192 Msa1254620:intron 40.0%
TGGTTACAATGTAGGATGGT+GGG + chr8_2:52708193-52708212 Msa1254620:intron 40.0%
AATTATGCGGTTGTCGAAAC+AGG - chr8_2:52708236-52708255 None:intergenic 40.0%
AAGCACTTGTGAGACTGTTT+GGG - chr8_2:52708446-52708465 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr8_2:52708447-52708466 None:intergenic 40.0%
AACAGTCTCACAAGTGCTTA+TGG + chr8_2:52708447-52708466 Msa1254620:intron 40.0%
AAAAACACTTGGGGTCCATT+TGG - chr8_2:52708499-52708518 None:intergenic 40.0%
!! AAGCACTTGTGAGAGTGTTT+GGG - chr8_2:52708569-52708588 None:intergenic 40.0%
!! TAAGCACTTGTGAGAGTGTT+TGG - chr8_2:52708570-52708589 None:intergenic 40.0%
TCAAATAAGGCAATCCAAGC+AGG + chr8_2:52708605-52708624 Msa1254620:intron 40.0%
! TTAGGTTGTGGAAGTTTGTC+AGG + chr8_2:52708701-52708720 Msa1254620:intron 40.0%
TTTGTCAGGTTCTGCTATCT+AGG + chr8_2:52708715-52708734 Msa1254620:intron 40.0%
TTGTCAGGTTCTGCTATCTA+GGG + chr8_2:52708716-52708735 Msa1254620:intron 40.0%
! TCTGCTATCTAGGGTCTATT+TGG + chr8_2:52708725-52708744 Msa1254620:intron 40.0%
ACTTATTTGAGCTTATCGGC+TGG + chr8_2:52708752-52708771 Msa1254620:intron 40.0%
GGTATAAGCACTTGTGAGAT+AGG + chr8_2:52708773-52708792 Msa1254620:intron 40.0%
ATTACACTTTCATCTGGGGA+TGG + chr8_2:52709059-52709078 Msa1254620:intron 40.0%
TCTTCCTCAGGTCTAGAAAT+AGG + chr8_2:52709192-52709211 Msa1254620:intron 40.0%
AGAATAAGAAGCAGCAGCAA+AGG + chr8_2:52709274-52709293 Msa1254620:CDS 40.0%
! GGATTGTTGTCTTTTGTGGA+AGG + chr8_2:52709295-52709314 Msa1254620:CDS 40.0%
TCCCCTCCCATAATCTAATT+TGG + chr8_2:52709393-52709412 Msa1254620:intron 40.0%
GCACCAAATTAGATTATGGG+AGG - chr8_2:52709399-52709418 None:intergenic 40.0%
GCACTTGACATTGTCAACTT+TGG + chr8_2:52709493-52709512 Msa1254620:CDS 40.0%
! CAACTTTGGAGAAGAAGATG+AGG + chr8_2:52709507-52709526 Msa1254620:CDS 40.0%
! ACTTTGGAGAAGAAGATGAG+GGG + chr8_2:52709509-52709528 Msa1254620:CDS 40.0%
CTCTGTCGGATGTACTTATA+AGG + chr8_2:52709617-52709636 Msa1254620:CDS 40.0%
ACGGCATTCCCATTTGAATT+GGG + chr8_2:52709690-52709709 Msa1254620:intron 40.0%
AGAGTTGAGTAGAAACAGCA+GGG - chr8_2:52709769-52709788 None:intergenic 40.0%
!! AGGAGTACTGGAAGAATTCA+TGG - chr8_2:52709902-52709921 None:intergenic 40.0%
CCTAGAGATGAAAACAACCA+TGG - chr8_2:52710074-52710093 None:intergenic 40.0%
!! CCATGGTTGTTTTCATCTCT+AGG + chr8_2:52710071-52710090 Msa1254620:intron 40.0%
!! GGTTGTTTTCATCTCTAGGT+TGG + chr8_2:52710075-52710094 Msa1254620:intron 40.0%
GTATAGGAGGAAAATGAGCA+AGG + chr8_2:52710273-52710292 Msa1254620:intron 40.0%
TCTTCATCCTAGCAATCTCA+AGG - chr8_2:52710300-52710319 None:intergenic 40.0%
!! TGAATTGAAGGTGCTTGCGA+AGG - chr8_2:52707535-52707554 None:intergenic 45.0%
TCTACCCCTACCAGTGATTT+GGG + chr8_2:52708076-52708095 Msa1254620:CDS 45.0%
TTTGCCCAAATCACTGGTAG+GGG - chr8_2:52708083-52708102 None:intergenic 45.0%
AGTGCTCTATGCTATGTTGG+AGG + chr8_2:52708165-52708184 Msa1254620:intron 45.0%
CTGGTTACAATGTAGGATGG+TGG + chr8_2:52708192-52708211 Msa1254620:intron 45.0%
TCCTCAGGTCTAGAAATAGG+CGG + chr8_2:52709195-52709214 Msa1254620:intron 45.0%
! CACAGTTGGCTCTTAAGCAT+CGG + chr8_2:52709250-52709269 Msa1254620:CDS 45.0%
! AGTACATCCGACAGAGCATT+TGG - chr8_2:52709613-52709632 None:intergenic 45.0%
CACGGCATTCCCATTTGAAT+TGG + chr8_2:52709689-52709708 Msa1254620:intron 45.0%
CAGAGTTGAGTAGAAACAGC+AGG - chr8_2:52709770-52709789 None:intergenic 45.0%
ATCAACCCAGTTAGCACTAC+TGG + chr8_2:52709945-52709964 Msa1254620:intron 45.0%
ATGGCTAAACACCCAAGACT+CGG - chr8_2:52710055-52710074 None:intergenic 45.0%
CTAGAGGGGGGAAAAACAAA+CGG - chr8_2:52710111-52710130 None:intergenic 45.0%
GATTGCTAGGATGAAGAAGC+TGG + chr8_2:52710303-52710322 Msa1254620:CDS 45.0%
TAGGATGAAGAAGCTGGCTA+AGG + chr8_2:52710309-52710328 Msa1254620:CDS 45.0%
AGAACTTAGGGACCTACAGA+AGG + chr8_2:52710339-52710358 Msa1254620:CDS 45.0%
! GCTCAAGTTTTGCCTTCTGT+AGG - chr8_2:52710354-52710373 None:intergenic 45.0%
!! ATTGAAGGTGCTTGCGAAGG+AGG - chr8_2:52707532-52707551 None:intergenic 50.0%
CTTTCCAACAATGGTGCTCG+AGG + chr8_2:52707619-52707638 Msa1254620:exon 50.0%
GTTACCTCGAGCACCATTGT+TGG - chr8_2:52707626-52707645 None:intergenic 50.0%
GTTGGAGTTATGACCATGGC+CGG + chr8_2:52708034-52708053 Msa1254620:CDS 50.0%
TTGGAGTTATGACCATGGCC+GGG + chr8_2:52708035-52708054 Msa1254620:CDS 50.0%
CAAAACTCGAACTCCCTTCC+CGG - chr8_2:52708056-52708075 None:intergenic 50.0%
GTCTACCCCTACCAGTGATT+TGG + chr8_2:52708075-52708094 Msa1254620:CDS 50.0%
CACTTGGGGTCCATTTGGAT+TGG - chr8_2:52708494-52708513 None:intergenic 50.0%
AATAACACTTGGGGCCTGCT+TGG - chr8_2:52708622-52708641 None:intergenic 50.0%
! TGCATCGGCAGCTATGTGTA+TGG + chr8_2:52708995-52709014 Msa1254620:intron 50.0%
!! ACCGCCTATTTCTAGACCTG+AGG - chr8_2:52709199-52709218 None:intergenic 50.0%
AAACCTAGCTGCTGCCATTC+AGG + chr8_2:52709224-52709243 Msa1254620:CDS 50.0%
CAGGTGGAACATGAACCATG+TGG - chr8_2:52709588-52709607 None:intergenic 50.0%
CACATGGTTCATGTTCCACC+TGG + chr8_2:52709586-52709605 Msa1254620:CDS 50.0%
ACCTGGTCCAAATGCTCTGT+CGG + chr8_2:52709603-52709622 Msa1254620:CDS 50.0%
GCATGCCAGTAGTGCTAACT+GGG - chr8_2:52709953-52709972 None:intergenic 50.0%
AGCATGCCAGTAGTGCTAAC+TGG - chr8_2:52709954-52709973 None:intergenic 50.0%
GAGTCTTGGGTGTTTAGCCA+TGG + chr8_2:52710054-52710073 Msa1254620:intron 50.0%
GGGGAAAAACAAACGGAGCA+AGG - chr8_2:52710104-52710123 None:intergenic 50.0%
GCAAGGACCTTGAGATTGCT+AGG + chr8_2:52710290-52710309 Msa1254620:CDS 50.0%
AGTTATGACCATGGCCGGGA+AGG + chr8_2:52708039-52708058 Msa1254620:CDS 55.0%
GTTATGACCATGGCCGGGAA+GGG + chr8_2:52708040-52708059 Msa1254620:CDS 55.0%
TGGCAAGTGCCACACTGTCA+TGG + chr8_2:52709015-52709034 Msa1254620:intron 55.0%
GGCAAGTGCCACACTGTCAT+GGG + chr8_2:52709016-52709035 Msa1254620:intron 55.0%
GCAAGTGCCACACTGTCATG+GGG + chr8_2:52709017-52709036 Msa1254620:intron 55.0%
CATCCATCCCCATGACAGTG+TGG - chr8_2:52709027-52709046 None:intergenic 55.0%
CACACTGTCATGGGGATGGA+TGG + chr8_2:52709025-52709044 Msa1254620:intron 55.0%
TGCCATTCAGGTGGCACAGT+TGG + chr8_2:52709236-52709255 Msa1254620:CDS 55.0%
AGCCAACTGTGCCACCTGAA+TGG - chr8_2:52709241-52709260 None:intergenic 55.0%
TGAGGGGAAGACAGAGAAGC+TGG + chr8_2:52709525-52709544 Msa1254620:CDS 55.0%
! GACAGAGCATTTGGACCAGG+TGG - chr8_2:52709604-52709623 None:intergenic 55.0%
! TCCGACAGAGCATTTGGACC+AGG - chr8_2:52709607-52709626 None:intergenic 55.0%
GTGCCACACTGTCATGGGGA+TGG + chr8_2:52709021-52709040 Msa1254620:intron 60.0%
CCACCTGAATGGCAGCAGCT+AGG - chr8_2:52709230-52709249 None:intergenic 60.0%
CCTAGCTGCTGCCATTCAGG+TGG + chr8_2:52709227-52709246 Msa1254620:CDS 60.0%
TCGAACTCCCTTCCCGGCCA+TGG - chr8_2:52708050-52708069 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 52707485 52710402 52707485 ID=Msa1254620;Name=Msa1254620
chr8_2 mRNA 52707485 52710402 52707485 ID=Msa1254620-mRNA-1;Parent=Msa1254620;Name=Msa1254620-mRNA-1;_AED=0.08;_eAED=0.08;_QI=144|0.8|0.83|0.83|1|1|6|0|226
chr8_2 exon 52707485 52707640 52707485 ID=Msa1254620-mRNA-1:exon:16237;Parent=Msa1254620-mRNA-1
chr8_2 exon 52707752 52707865 52707752 ID=Msa1254620-mRNA-1:exon:16238;Parent=Msa1254620-mRNA-1
chr8_2 exon 52708016 52708121 52708016 ID=Msa1254620-mRNA-1:exon:16239;Parent=Msa1254620-mRNA-1
chr8_2 exon 52709202 52709316 52709202 ID=Msa1254620-mRNA-1:exon:16240;Parent=Msa1254620-mRNA-1
chr8_2 exon 52709429 52709638 52709429 ID=Msa1254620-mRNA-1:exon:16241;Parent=Msa1254620-mRNA-1
chr8_2 exon 52710279 52710402 52710279 ID=Msa1254620-mRNA-1:exon:16242;Parent=Msa1254620-mRNA-1
chr8_2 five_prime_UTR 52707485 52707628 52707485 ID=Msa1254620-mRNA-1:five_prime_utr;Parent=Msa1254620-mRNA-1
chr8_2 CDS 52707629 52707640 52707629 ID=Msa1254620-mRNA-1:cds;Parent=Msa1254620-mRNA-1
chr8_2 CDS 52707752 52707865 52707752 ID=Msa1254620-mRNA-1:cds;Parent=Msa1254620-mRNA-1
chr8_2 CDS 52708016 52708121 52708016 ID=Msa1254620-mRNA-1:cds;Parent=Msa1254620-mRNA-1
chr8_2 CDS 52709202 52709316 52709202 ID=Msa1254620-mRNA-1:cds;Parent=Msa1254620-mRNA-1
chr8_2 CDS 52709429 52709638 52709429 ID=Msa1254620-mRNA-1:cds;Parent=Msa1254620-mRNA-1
chr8_2 CDS 52710279 52710402 52710279 ID=Msa1254620-mRNA-1:cds;Parent=Msa1254620-mRNA-1
Gene Sequence

>Msa1254620

ATGGTGCTCGAGGCTACACTTATCATTATGGATAACTCTGAACATATGCGTAACGGTGATTACTCTCCTTCTCGATTTCAAGCTCAATCCGACACTGTTAGTCTTATTTGCGGTGCTAAAACTCAGTCTAATCCTGAAAATACTGTTGGAGTTATGACCATGGCCGGGAAGGGAGTTCGAGTTTTGTCTACCCCTACCAGTGATTTGGGCAAAATCTTGGGTTGTATGCATGGTCTAGAAATAGGCGGTGAGATAAACCTAGCTGCTGCCATTCAGGTGGCACAGTTGGCTCTTAAGCATCGGCAGAATAAGAAGCAGCAGCAAAGGATTGTTGTCTTTTGTGGAAGTCCTGTCAAGCATGAGAAGAAAATGTTGGAGATGATTGGAAGAAAGTTGAAAAAGAATAGTGTTGCACTTGACATTGTCAACTTTGGAGAAGAAGATGAGGGGAAGACAGAGAAGCTGGAAGCACTCCTTGCAGCTGTAAACAATAATGATAGTAGCCACATGGTTCATGTTCCACCTGGTCCAAATGCTCTGTCGGATGTACTTATAAGGAGGAAAATGAGCAAGGACCTTGAGATTGCTAGGATGAAGAAGCTGGCTAAGGAAGAAAAAGAACTTAGGGACCTACAGAAGGCAAAACTTGAGCCCAAACCATTGAATGAGATTCTTGCTTAG

Protein sequence

>Msa1254620

MVLEATLIIMDNSEHMRNGDYSPSRFQAQSDTVSLICGAKTQSNPENTVGVMTMAGKGVRVLSTPTSDLGKILGCMHGLEIGGEINLAAAIQVAQLALKHRQNKKQQQRIVVFCGSPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLAAVNNNDSSHMVHVPPGPNALSDVLIRRKMSKDLEIARMKKLAKEEKELRDLQKAKLEPKPLNEILA*