AlfalfaGEDB | Msa1213110

M. sativa cultivar zhongmu-4 / Msa1213110

KEGG: -
GO: -
PFAM: PF03110.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1213110	sp\|Q94JW8\|SPL6_ARATH	64.286	126	32	3	75	197	83	198	8.87e-44	162

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1213110	A0A072V1P8	96.383	470	17	0	1	470	1	470	0.0	939

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1213110	TF	SBP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0344570	Msa1213110	0.800094	1.693303e-48	-8.615850e-47
Msa0392490	Msa1213110	0.812611	3.885286e-51	-8.615850e-47
Msa0487570	Msa1213110	0.803706	3.066591e-49	-8.615850e-47
Msa0487630	Msa1213110	0.818557	1.842007e-52	-8.615850e-47
Msa1213110	Msa1213220	0.981928	8.473571e-154	-8.615850e-47
Msa1213110	Msa1260370	0.881265	2.770072e-70	-8.615850e-47
Msa1213110	Msa1300180	0.916706	1.290043e-85	-8.615850e-47
Msa1213110	Msa1374550	0.806000	1.017424e-49	-8.615850e-47
Msa1213110	Msa1421550	0.805853	1.092154e-49	-8.615850e-47

Showing 1 to 9 of 9 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1213110	MtrunA17_Chr4g0061651	96.383	470	17	0	1	470	1	470	0.0	939
Msa1213110	MtrunA17_Chr2g0308321	62.272	493	147	11	12	470	52	539	9.93e-173	496
Msa1213110	MtrunA17_Chr5g0420051	49.315	219	88	8	56	264	111	316	3.24e-51	179
Msa1213110	MtrunA17_Chr3g0132091	54.348	138	42	4	75	198	18	148	2.42e-38	142
Msa1213110	MtrunA17_Chr7g0224821	35.331	317	179	8	75	382	26	325	6.09e-38	142
Msa1213110	MtrunA17_Chr8g0386271	38.194	288	132	11	75	339	45	309	8.32e-37	139
Msa1213110	MtrunA17_Chr7g0231911	75.676	74	18	0	123	196	149	222	5.53e-34	130
Msa1213110	MtrunA17_Chr3g0122411	50.769	130	57	2	72	198	115	240	6.54e-34	132
Msa1213110	MtrunA17_Chr7g0258471	69.136	81	25	0	117	197	136	216	1.95e-33	130
Msa1213110	MtrunA17_Chr8g0334671	73.684	76	20	0	123	198	187	262	3.50e-33	128

Showing 1 to 10 of 23 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1213110	AT1G69170.1	64.286	126	32	3	75	197	83	198	9.01e-45	162
Msa1213110	AT5G50570.1	46.067	178	84	4	123	288	101	278	2.54e-37	140
Msa1213110	AT5G50570.2	46.067	178	84	4	123	288	101	278	2.54e-37	140
Msa1213110	AT5G50670.1	46.067	178	84	4	123	288	101	278	2.54e-37	140
Msa1213110	AT5G50670.2	46.067	178	84	4	123	288	101	278	2.54e-37	140
Msa1213110	AT1G27370.6	68.966	87	27	0	123	209	176	262	2.34e-36	137
Msa1213110	AT1G27370.1	68.966	87	27	0	123	209	176	262	6.29e-36	137
Msa1213110	AT1G27370.5	68.966	87	27	0	123	209	176	262	6.29e-36	137
Msa1213110	AT1G27370.3	68.966	87	27	0	123	209	176	262	6.29e-36	137
Msa1213110	AT1G27370.2	68.966	87	27	0	123	209	176	262	6.29e-36	137

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Find 132 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGCTGCTGGTGGCT+TGG	0.511710	8_1:+73155907	None:intergenic
AAAAGTAAACAAGTTTATGT+TGG	0.539447	8_1:+73157994	None:intergenic
AAAATGATGATGAAGGTGTC+AGG	0.533491	8_1:+73158174	None:intergenic
AAAATGTGATATTAATGTTG+TGG	0.538101	8_1:-73154840	Msa1213110:three_prime_UTR
AAACCACTTTGGAAGACCTC+TGG	0.529651	8_1:+73155878	None:intergenic
AAAGCCATTGATGAATAGAT+AGG	0.447792	8_1:+73158268	None:intergenic
AAATGTGATATTAATGTTGT+GGG	0.489206	8_1:-73154839	Msa1213110:three_prime_UTR
AACACGAGGAGAGTGGAAAT+TGG	0.352976	8_1:+73158357	None:intergenic
AACATGTTAGGCTATATCAA+TGG	0.570957	8_1:-73155005	Msa1213110:three_prime_UTR
AACTTGCACTCACGCTGATT+CGG	0.412286	8_1:-73155105	Msa1213110:three_prime_UTR

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAATAGATAGGAAAATGGAA+AGG	+	chr8_1:73154890-73154909	None:intergenic	30.0%
AAAGCCATTGATGAATAGAT+AGG	+	chr8_1:73154902-73154921	None:intergenic	30.0%
TATTGGAGTGAAGAATAAGA+AGG	+	chr8_1:73154930-73154949	None:intergenic	30.0%
ACTGCATATTGTCAAGTTTA+TGG	-	chr8_1:73155780-73155799	Msa1213110:CDS	30.0%
TCAAGTTTATGGATGTAACA+AGG	-	chr8_1:73155791-73155810	Msa1213110:CDS	30.0%
ATTCCATTCACAATGACTAT+AGG	+	chr8_1:73155879-73155898	None:intergenic	30.0%
ATTTCTAACTAGCTGGAATT+TGG	-	chr8_1:73156012-73156031	Msa1213110:intron	30.0%
AGGCTAAAAATCAATTGTAG+AGG	+	chr8_1:73156046-73156065	None:intergenic	30.0%
TGACTAAAGAGGTTAATGTT+TGG	+	chr8_1:73156106-73156125	None:intergenic	30.0%
TCATGTTCTAGTATTCCAAT+AGG	+	chr8_1:73156239-73156258	None:intergenic	30.0%

Showing 1 to 10 of 231 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	73154795	73158394	73154795	ID=Msa1213110;Name=Msa1213110
chr8_1	mRNA	73154795	73158394	73154795	ID=Msa1213110-mRNA-1;Parent=Msa1213110;Name=Msa1213110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=628\|1\|1\|1\|1\|1\|3\|380\|470
chr8_1	exon	73154795	73155947	73154795	ID=Msa1213110-mRNA-1:exon:24814;Parent=Msa1213110-mRNA-1
chr8_1	exon	73156429	73156562	73156429	ID=Msa1213110-mRNA-1:exon:24813;Parent=Msa1213110-mRNA-1
chr8_1	exon	73157261	73158394	73157261	ID=Msa1213110-mRNA-1:exon:24812;Parent=Msa1213110-mRNA-1
chr8_1	five_prime_UTR	73157767	73158394	73157767	ID=Msa1213110-mRNA-1:five_prime_utr;Parent=Msa1213110-mRNA-1
chr8_1	CDS	73157261	73157766	73157261	ID=Msa1213110-mRNA-1:cds;Parent=Msa1213110-mRNA-1
chr8_1	CDS	73156429	73156562	73156429	ID=Msa1213110-mRNA-1:cds;Parent=Msa1213110-mRNA-1
chr8_1	CDS	73155175	73155947	73155175	ID=Msa1213110-mRNA-1:cds;Parent=Msa1213110-mRNA-1
chr8_1	three_prime_UTR	73154795	73155174	73154795	ID=Msa1213110-mRNA-1:three_prime_utr;Parent=Msa1213110-mRNA-1

Gene Sequence

>Msa1213110

ATGGAATCTTGGAGTTATATTTCTGAAGAAAAAGGTTCTGAAGAATTAGGCTTTTGTGAAATGTTTGGGAAACAATATTCAGATGATTTCAATTTCATTGGAAGTGTTCCAAGCAAGAAACTTGATGGTAAATTTGATGACCCAAGTGAGTTTTCTGTAAAAGGGGACACAAATTTCAAGCTTTCAAATTCCGTGGTGGAATCCAATGGTTGGGATTCTCTCATTGATTTGAAGCTAGGAAGATTTGATGATCATGGCAATGCTTCAATTGATGCGGCATTTTCCAAAGGAGCAGCACCTATTTTGTCTTCTTGTGAGTCTTCAACACCTCCCAAGAGAGTGAGAGTGCACTCAATGACTGCATATTGTCAAGTTTATGGATGTAACAAGGATCTTAGTTCTTGTAAGGACTACCATAAGAGGCATAAAGTTTGTGAGGTTCACTCCAAGACTCCTATAGTCATTGTGAATGGAATTGAGCAGAGGTTTTGTCAACAATGTAGCAGGTTTCATTTGCTGTCTGAGTTTGATGATGGTAAGCGCAGTTGCCGTAAACGACTTGCAGGCCATAATGAGCGTCGAAGAAAACCACAAGGCGTTCACTCTACAAATTCTGGGAGACTGTTTCAGCCATTTGGTGATATCAGATTCCAGGGAACCAAGCCACCAGCAGCATCTTTTCTCTATCCAGAGGTCTTCCAAAGTGGTTTCTGGAGACCTATGAAAGCAGAACATGAAGCTGGCTTTAGGCATTTTTCTTCTGTGCCTGTCACCAATGGACATCTTCAATCAAGATCTCCGTTTCCTTCGTACAACGAAAAACAATTTCCCTTTCTTCATGAAAATGTTGCCACATCCACTACAGGCAGTAAGTTCAGTGAAAACAATAGCCATTATGCTCATGCCATTGGCTACACCTCCTTAGGAAGCGAAGACTTCAATGTTTTTCATACCGCACCAAGCATTCAAGGATTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCAATAACACTTCAAGCCAGTCCTTGGAAATTCCCTTTGATAACCCTTTGGTTATTCCAAGCAGCCATAGCCATGTCTACAGCATAAGATCACAAGCGACTTCCTCAAGCCGAGTGTCTGATAGACTTTTATCCGAATTAAATCCTACAGATGGAAGTCATCTCAGTCCTATATTGGTACCAGACAATAATGATATCGTGAACTTTGAAATGGAAGACGGGATCTTCCATGATTCAGATTTTGTGAATGTGAAAGACTGCCTTTCTTGTGAAGATGATGCAACCATCGATTTACTACAACTGTCGTCGCAGCTTCAACGAGTTGAGCATCATAGACAATCATTGCAGGTGAAGAAAGAGTTTGATTCTTCTTGCACTCTCCGAATTACTTAA

Protein sequence

>Msa1213110

MESWSYISEEKGSEELGFCEMFGKQYSDDFNFIGSVPSKKLDGKFDDPSEFSVKGDTNFKLSNSVVESNGWDSLIDLKLGRFDDHGNASIDAAFSKGAAPILSSCESSTPPKRVRVHSMTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTPIVIVNGIEQRFCQQCSRFHLLSEFDDGKRSCRKRLAGHNERRRKPQGVHSTNSGRLFQPFGDIRFQGTKPPAASFLYPEVFQSGFWRPMKAEHEAGFRHFSSVPVTNGHLQSRSPFPSYNEKQFPFLHENVATSTTGSKFSENNSHYAHAIGYTSLGSEDFNVFHTAPSIQGLSGISDSCALSLLSSQSNNTSSQSLEIPFDNPLVIPSSHSHVYSIRSQATSSSRVSDRLLSELNPTDGSHLSPILVPDNNDIVNFEMEDGIFHDSDFVNVKDCLSCEDDATIDLLQLSSQLQRVEHHRQSLQVKKEFDSSCTLRIT*