AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374550 MtrunA17_Chr5g0427051 96.283 269 7 2 1 267 1 268 0.0 533
Msa1374550 MtrunA17_Chr3g0133181 58.885 287 77 7 1 263 1 270 8.00e-93 275
Msa1374550 MtrunA17_Chr5g0412501 52.294 218 74 7 58 267 77 272 1.84e-56 182
Msa1374550 MtrunA17_Chr4g0076821 41.700 247 94 6 58 266 112 346 6.80e-51 170
Msa1374550 MtrunA17_Chr1g0188441 41.509 212 92 5 56 266 6 186 7.34e-48 157
Msa1374550 MtrunA17_Chr2g0315941 40.724 221 97 5 59 266 68 267 1.09e-46 157
Msa1374550 MtrunA17_Chr7g0217231 40.724 221 98 6 56 266 85 282 1.35e-44 153
Msa1374550 MtrunA17_Chr8g0367691 42.326 215 103 7 58 266 68 267 1.11e-43 149
Msa1374550 MtrunA17_Chr5g0404271 39.545 220 106 6 55 266 95 295 1.67e-43 149
Msa1374550 MtrunA17_Chr6g0453231 42.857 210 102 5 59 266 91 284 9.81e-41 143
Msa1374550 MtrunA17_Chr3g0092371 57.534 73 24 2 57 129 18 83 1.51e-20 83.6
Msa1374550 MtrunA17_Chr8g0357741 55.405 74 32 1 193 266 24 96 3.62e-20 82.8
Msa1374550 MtrunA17_Chr7g0243651 90.244 41 4 0 57 97 1 41 9.35e-20 80.9
Msa1374550 MtrunA17_Chr6g0479901 53.333 60 27 1 204 262 101 160 1.59e-16 75.5
Msa1374550 MtrunA17_Chr6g0479901 56.000 50 21 1 59 107 19 68 1.42e-11 61.6
Msa1374550 MtrunA17_Chr4g0060731 60.000 55 19 1 55 109 21 72 8.05e-16 70.5
Msa1374550 MtrunA17_Chr6g0453221 56.604 53 19 1 55 107 17 65 7.27e-13 62.8
Msa1374550 MtrunA17_Chr2g0278381 100.000 29 0 0 69 97 19 47 7.67e-13 63.2
Msa1374550 MtrunA17_Chr8g0361671 54.545 55 23 1 56 108 61 115 1.07e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374550 AT4G24660.1 48.289 263 88 7 7 267 4 220 3.63e-65 203
Msa1374550 AT4G24660.2 47.893 261 84 8 7 263 4 216 3.86e-62 196
Msa1374550 AT2G02540.2 38.868 265 123 7 18 266 43 284 8.53e-58 187
Msa1374550 AT2G02540.1 38.868 265 123 7 18 266 43 284 8.53e-58 187
Msa1374550 AT1G14440.1 40.566 212 105 3 57 266 88 280 7.80e-52 172
Msa1374550 AT1G14440.2 40.566 212 105 3 57 266 88 280 7.80e-52 172
Msa1374550 AT5G65410.1 43.439 221 90 3 50 267 66 254 1.16e-49 165
Msa1374550 AT2G18350.1 41.981 212 90 4 57 266 80 260 2.50e-47 159
Msa1374550 AT1G75240.1 40.693 231 118 2 56 267 73 303 7.03e-47 159
Msa1374550 AT3G50890.1 40.566 212 94 3 58 265 59 242 1.66e-43 148
Msa1374550 AT1G69600.1 40.376 213 95 5 57 263 29 215 5.62e-38 134
Msa1374550 AT5G15210.1 36.986 219 92 5 54 260 51 235 2.18e-37 133
Msa1374550 AT5G39760.1 36.667 210 128 2 59 266 56 262 9.89e-36 130
Msa1374550 AT3G28920.1 36.916 214 116 4 57 263 50 251 2.97e-35 129
Msa1374550 AT5G60480.1 38.164 207 89 7 56 260 34 203 1.12e-30 114
Msa1374550 AT1G74660.2 69.355 62 19 0 54 115 34 95 5.76e-25 95.9
Msa1374550 AT1G74660.1 66.667 69 21 1 54 122 34 100 5.77e-25 95.9
Msa1374550 AT3G28917.1 64.789 71 22 2 54 123 28 96 3.92e-24 93.6
Msa1374550 AT1G18835.1 63.793 58 18 1 57 114 24 78 5.41e-19 79.7
Msa1374550 AT5G42780.1 57.692 52 18 2 59 109 64 112 7.37e-11 61.2
Msa1374550 AT5G42780.1 36.232 69 44 0 195 263 170 238 7.37e-11 61.2

Find 78 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACTGGTGTTTGTGTTTC+TGG 0.083748 tig0019521:+19624 Msa1374550:intergenic
GCTCTCCCTGCTGCTGCTTC+CGG 0.319955 tig0019521:-19171 Msa1374550:CDS
GGTGGTGGTGGTAGCGGTGG+TGG 0.325308 tig0019521:-19090 Msa1374550:CDS
CCTGCTGCTGCTTCCGGTGG+TGG 0.355404 tig0019521:-19165 Msa1374550:CDS
TCTCCTTGCGGTGGAAGTTC+CGG 0.388446 tig0019521:+19367 Msa1374550:intergenic
GTGGAGGTGGTGGCTGTGAC+CGG 0.391995 tig0019521:+19316 Msa1374550:intergenic
TTCGGTGGCCACGCTGTTGA+CGG 0.414354 tig0019521:-19462 Msa1374550:CDS
AGAGAAATGTTCTTAAAGTC+TGG 0.416953 tig0019521:-18927 Msa1374550:CDS
CCACCACCGGAAGCAGCAGC+AGG 0.427582 tig0019521:+19165 Msa1374550:intergenic
AAGAATCACGCCGTTAGCTT+CGG 0.428386 tig0019521:-19480 Msa1374550:CDS
TTTATCGCTGCCGGTGAAGA+AGG 0.429195 tig0019521:-19429 Msa1374550:CDS
GGTGGTGGTAGCGGTGGTGG+TGG 0.439608 tig0019521:-19087 Msa1374550:CDS
AGTAGCGGTGGAGGTGGTGG+TGG 0.442408 tig0019521:-19105 Msa1374550:CDS
AAACTCACCGTCGGAGTTGA+CGG 0.443498 tig0019521:-19561 Msa1374550:CDS
AGCAGTAGCGGTGGAGGTGG+TGG 0.444551 tig0019521:-19108 Msa1374550:CDS
CACAATAACAAGAACACTCT+TGG 0.453033 tig0019521:-18901 Msa1374550:CDS
GGAGGAGCACGGTGGTAGTA+AGG 0.453304 tig0019521:+19258 Msa1374550:intergenic
CGTGATTCTTCTGACATTCT+CGG 0.457636 tig0019521:+19493 Msa1374550:intergenic
GGAACAGAAAGAGAAGTTGC+TGG 0.466315 tig0019521:-19031 Msa1374550:CDS
TGATATTGCGGCGGTGGAGG+TGG 0.468130 tig0019521:+19303 Msa1374550:intergenic
TATTGCGGCGGTGGAGGTGG+TGG 0.476996 tig0019521:+19306 Msa1374550:intergenic
AGCGGTGGAGGTGGTGGTGG+TGG 0.477596 tig0019521:-19102 Msa1374550:CDS
TGATGATATTGCGGCGGTGG+AGG 0.478021 tig0019521:+19300 Msa1374550:intergenic
GTAGCGGTGGTGGTGGATCA+AGG 0.485672 tig0019521:-19080 Msa1374550:CDS
CCACCTCCACCGCTACTGCT+AGG 0.486199 tig0019521:+19111 Msa1374550:intergenic
AAACGGTTAGTTCATGTAAC+CGG 0.491216 tig0019521:-19335 Msa1374550:CDS
AACGGTCTGTGATGTGCCAC+CGG 0.497928 tig0019521:+19195 Msa1374550:intergenic
ATGATGATGGTGAAGGTAAC+CGG 0.500422 tig0019521:+19227 Msa1374550:intergenic
CAAGGAGATCGATGGTGAAA+CGG 0.502038 tig0019521:-19352 Msa1374550:CDS
AGAGGAACAAGAAGAGGAGA+TGG 0.506205 tig0019521:-19652 Msa1374550:CDS
TTCAAGTGTTCCTTCTTCAC+CGG 0.506613 tig0019521:+19419 Msa1374550:intergenic
CGTGCTCCTCCTTCCACAGC+CGG 0.511664 tig0019521:-19246 Msa1374550:CDS
TTCTCTGCTCATTCCACCAC+CGG 0.513977 tig0019521:+19152 Msa1374550:intergenic
CACCTCCACCGCTACTGCTA+GGG 0.520409 tig0019521:+19112 Msa1374550:intergenic
AACCCTAGCAGTAGCGGTGG+AGG 0.520715 tig0019521:-19114 Msa1374550:CDS
ATGGTGAAGGTAACCGGCTG+TGG 0.521317 tig0019521:+19233 Msa1374550:intergenic
CTCCCTGCTGCTGCTTCCGG+TGG 0.523308 tig0019521:-19168 Msa1374550:CDS
TGGTGATGATATTGCGGCGG+TGG 0.524405 tig0019521:+19297 Msa1374550:intergenic
GCAGCAGCAGGGAGAGCCAA+CGG 0.524507 tig0019521:+19177 Msa1374550:intergenic
GCGCCGCTTGTAACTGTCAC+CGG 0.526555 tig0019521:-19386 Msa1374550:CDS
CCATCATCATCTTGCAACTC+CGG 0.527038 tig0019521:-19214 Msa1374550:CDS
CCTAGCAGTAGCGGTGGAGG+TGG 0.532726 tig0019521:-19111 Msa1374550:CDS
AATCACGCCGTTAGCTTCGG+TGG 0.536570 tig0019521:-19477 Msa1374550:CDS
TTTCCTTCCGTCAACTCCGA+CGG 0.536586 tig0019521:+19554 Msa1374550:intergenic
GAGTCATAACTCGTTGGCAC+TGG 0.537593 tig0019521:+19609 Msa1374550:intergenic
GTCGGAGTTGACGGAAGGAA+AGG 0.556014 tig0019521:-19552 Msa1374550:CDS
CACCATCGATCTCCTTGCGG+TGG 0.556188 tig0019521:+19358 Msa1374550:intergenic
CCAACGAGTTATGACTCACT+TGG 0.564895 tig0019521:-19603 Msa1374550:CDS
TGTTGCGAGTTTATCGCTGC+CGG 0.567002 tig0019521:-19438 Msa1374550:CDS
TGAAGGTAACCGGCTGTGGA+AGG 0.577589 tig0019521:+19237 Msa1374550:intergenic
AATGGAATTTGATGAACAAG+AGG 0.584250 tig0019521:-19670 Msa1374550:CDS
ATCTCAAACCCTAGCAGTAG+CGG 0.586840 tig0019521:-19120 Msa1374550:CDS
GTTGACGGAAGGAAAGGTAA+TGG 0.591283 tig0019521:-19546 Msa1374550:CDS
TGAACAAGAGGAACAAGAAG+AGG 0.593455 tig0019521:-19658 Msa1374550:CDS
CACCACCGGAAGCAGCAGCA+GGG 0.602778 tig0019521:+19166 Msa1374550:intergenic
CCGGAGTTGCAAGATGATGA+TGG 0.603279 tig0019521:+19214 Msa1374550:intergenic
CCAAGTGAGTCATAACTCGT+TGG 0.607193 tig0019521:+19603 Msa1374550:intergenic
AGGTAACCGGCTGTGGAAGG+AGG 0.612370 tig0019521:+19240 Msa1374550:intergenic
GGTGGCACATCACAGACCGT+TGG 0.612785 tig0019521:-19193 Msa1374550:CDS
ATTCAGAACAAAATTCACTC+AGG 0.624697 tig0019521:-19052 Msa1374550:CDS
TCACCGGAACTTCCACCGCA+AGG 0.633282 tig0019521:-19370 Msa1374550:CDS
TCAAACCCTAGCAGTAGCGG+TGG 0.634884 tig0019521:-19117 Msa1374550:CDS
TCACCGTCGGAGTTGACGGA+AGG 0.639683 tig0019521:-19557 Msa1374550:CDS
TTCCACCGCAAGGAGATCGA+TGG 0.642395 tig0019521:-19360 Msa1374550:CDS
TCATCATCTTGCAACTCCGG+TGG 0.648426 tig0019521:-19211 Msa1374550:CDS
TTGCTGTGGTGATGATATTG+CGG 0.650383 tig0019521:+19291 Msa1374550:intergenic
GGAAGGAAAGGTAATGGCAA+CGG 0.663047 tig0019521:-19540 Msa1374550:CDS
TTTCACCATCGATCTCCTTG+CGG 0.669478 tig0019521:+19355 Msa1374550:intergenic
CGGCTGTGGAAGGAGGAGCA+CGG 0.673027 tig0019521:+19247 Msa1374550:intergenic
TTGCAAGATGATGATGGTGA+AGG 0.675327 tig0019521:+19220 Msa1374550:intergenic
AGCGTGGCCACCGAAGCTAA+CGG 0.680090 tig0019521:+19470 Msa1374550:intergenic
TCACGTTCAAAACTCACCGT+CGG 0.687077 tig0019521:-19570 Msa1374550:CDS
CGCAACAACCGTCAACAGCG+TGG 0.700015 tig0019521:+19454 Msa1374550:intergenic
CTGTGGTGATGATATTGCGG+CGG 0.702018 tig0019521:+19294 Msa1374550:intergenic
AGGAAAGGTAATGGCAACGG+CGG 0.721415 tig0019521:-19537 Msa1374550:CDS
AAGGCGAGAATTGATTGCTG+TGG 0.722344 tig0019521:+19277 Msa1374540:intergenic
GTTCCGGTGACAGTTACAAG+CGG 0.723013 tig0019521:+19383 Msa1374540:intergenic
CTGTGGAAGGAGGAGCACGG+TGG 0.754237 tig0019521:+19250 Msa1374540:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATTCAGAACAAAATTCACTC+AGG - tig0019521:19505-19524 Msa1374550:CDS 30.0%
AGAGAAATGTTCTTAAAGTC+TGG - tig0019521:19630-19649 Msa1374550:CDS 30.0%
ATTCAGAACAAAATTCACTC+AGG - tig0019521:19505-19524 Msa1374550:CDS 30.0%
AGAGAAATGTTCTTAAAGTC+TGG - tig0019521:19630-19649 Msa1374550:CDS 30.0%
! AAACGGTTAGTTCATGTAAC+CGG - tig0019521:19222-19241 Msa1374550:CDS 35.0%
CACAATAACAAGAACACTCT+TGG - tig0019521:19656-19675 Msa1374550:CDS 35.0%
! AAACGGTTAGTTCATGTAAC+CGG - tig0019521:19222-19241 Msa1374550:CDS 35.0%
CACAATAACAAGAACACTCT+TGG - tig0019521:19656-19675 Msa1374550:CDS 35.0%
TGAACAAGAGGAACAAGAAG+AGG - tig0019521:18899-18918 Msa1374550:CDS 40.0%
CGTGATTCTTCTGACATTCT+CGG + tig0019521:19067-19086 Msa1374550:intergenic 40.0%
TTCAAGTGTTCCTTCTTCAC+CGG + tig0019521:19141-19160 Msa1374550:intergenic 40.0%
! TTGCTGTGGTGATGATATTG+CGG + tig0019521:19269-19288 Msa1374550:intergenic 40.0%
!! ATGATGATGGTGAAGGTAAC+CGG + tig0019521:19333-19352 Msa1374550:intergenic 40.0%
!! TTGCAAGATGATGATGGTGA+AGG + tig0019521:19340-19359 Msa1374550:intergenic 40.0%
! CTTTTGCTGAAGAACATGGT+TGG - tig0019521:19549-19568 Msa1374550:CDS 40.0%
TGAACAAGAGGAACAAGAAG+AGG - tig0019521:18899-18918 Msa1374550:CDS 40.0%
CGTGATTCTTCTGACATTCT+CGG + tig0019521:19067-19086 Msa1374550:intergenic 40.0%
TTCAAGTGTTCCTTCTTCAC+CGG + tig0019521:19141-19160 Msa1374550:intergenic 40.0%
! TTGCTGTGGTGATGATATTG+CGG + tig0019521:19269-19288 Msa1374550:intergenic 40.0%
!! ATGATGATGGTGAAGGTAAC+CGG + tig0019521:19333-19352 Msa1374550:intergenic 40.0%
!! TTGCAAGATGATGATGGTGA+AGG + tig0019521:19340-19359 Msa1374550:intergenic 40.0%
! CTTTTGCTGAAGAACATGGT+TGG - tig0019521:19549-19568 Msa1374550:CDS 40.0%
AGAGGAACAAGAAGAGGAGA+TGG - tig0019521:18905-18924 Msa1374550:CDS 45.0%
CCAAGTGAGTCATAACTCGT+TGG + tig0019521:18957-18976 Msa1374550:intergenic 45.0%
CCAACGAGTTATGACTCACT+TGG - tig0019521:18954-18973 Msa1374550:CDS 45.0%
TCACGTTCAAAACTCACCGT+CGG - tig0019521:18987-19006 Msa1374550:CDS 45.0%
GTTGACGGAAGGAAAGGTAA+TGG - tig0019521:19011-19030 Msa1374550:CDS 45.0%
! GGAAGGAAAGGTAATGGCAA+CGG - tig0019521:19017-19036 Msa1374550:CDS 45.0%
! AAGAATCACGCCGTTAGCTT+CGG - tig0019521:19077-19096 Msa1374550:CDS 45.0%
TTTCACCATCGATCTCCTTG+CGG + tig0019521:19205-19224 Msa1374550:intergenic 45.0%
CAAGGAGATCGATGGTGAAA+CGG - tig0019521:19205-19224 Msa1374550:CDS 45.0%
AAGGCGAGAATTGATTGCTG+TGG + tig0019521:19283-19302 Msa1374550:intergenic 45.0%
CCATCATCATCTTGCAACTC+CGG - tig0019521:19343-19362 Msa1374550:CDS 45.0%
ATCTCAAACCCTAGCAGTAG+CGG - tig0019521:19437-19456 Msa1374550:CDS 45.0%
GGAACAGAAAGAGAAGTTGC+TGG - tig0019521:19526-19545 Msa1374550:CDS 45.0%
!! CTGGCTTTTGCTGAAGAACA+TGG - tig0019521:19545-19564 Msa1374550:CDS 45.0%
AGAGGAACAAGAAGAGGAGA+TGG - tig0019521:18905-18924 Msa1374550:CDS 45.0%
CCAAGTGAGTCATAACTCGT+TGG + tig0019521:18957-18976 Msa1374550:intergenic 45.0%
CCAACGAGTTATGACTCACT+TGG - tig0019521:18954-18973 Msa1374550:CDS 45.0%
TCACGTTCAAAACTCACCGT+CGG - tig0019521:18987-19006 Msa1374550:CDS 45.0%
GTTGACGGAAGGAAAGGTAA+TGG - tig0019521:19011-19030 Msa1374550:CDS 45.0%
! GGAAGGAAAGGTAATGGCAA+CGG - tig0019521:19017-19036 Msa1374550:CDS 45.0%
! AAGAATCACGCCGTTAGCTT+CGG - tig0019521:19077-19096 Msa1374550:CDS 45.0%
TTTCACCATCGATCTCCTTG+CGG + tig0019521:19205-19224 Msa1374550:intergenic 45.0%
CAAGGAGATCGATGGTGAAA+CGG - tig0019521:19205-19224 Msa1374550:CDS 45.0%
AAGGCGAGAATTGATTGCTG+TGG + tig0019521:19283-19302 Msa1374550:intergenic 45.0%
CCATCATCATCTTGCAACTC+CGG - tig0019521:19343-19362 Msa1374550:CDS 45.0%
ATCTCAAACCCTAGCAGTAG+CGG - tig0019521:19437-19456 Msa1374550:CDS 45.0%
GGAACAGAAAGAGAAGTTGC+TGG - tig0019521:19526-19545 Msa1374550:CDS 45.0%
!! CTGGCTTTTGCTGAAGAACA+TGG - tig0019521:19545-19564 Msa1374550:CDS 45.0%
!! GGCACTGGTGTTTGTGTTTC+TGG + tig0019521:18936-18955 Msa1374550:intergenic 50.0%
GAGTCATAACTCGTTGGCAC+TGG + tig0019521:18951-18970 Msa1374550:intergenic 50.0%
AAACTCACCGTCGGAGTTGA+CGG - tig0019521:18996-19015 Msa1374550:CDS 50.0%
TTTCCTTCCGTCAACTCCGA+CGG + tig0019521:19006-19025 Msa1374550:intergenic 50.0%
! AGGAAAGGTAATGGCAACGG+CGG - tig0019521:19020-19039 Msa1374550:CDS 50.0%
!!! CAACGGCGGTTTTGTTTCGA+CGG - tig0019521:19034-19053 Msa1374550:CDS 50.0%
TGTTGCGAGTTTATCGCTGC+CGG - tig0019521:19119-19138 Msa1374550:CDS 50.0%
TTTATCGCTGCCGGTGAAGA+AGG - tig0019521:19128-19147 Msa1374550:CDS 50.0%
GTTCCGGTGACAGTTACAAG+CGG + tig0019521:19177-19196 Msa1374550:intergenic 50.0%
! CTGTGGTGATGATATTGCGG+CGG + tig0019521:19266-19285 Msa1374550:intergenic 50.0%
CCGGAGTTGCAAGATGATGA+TGG + tig0019521:19346-19365 Msa1374550:intergenic 50.0%
TCATCATCTTGCAACTCCGG+TGG - tig0019521:19346-19365 Msa1374550:CDS 50.0%
TTCTCTGCTCATTCCACCAC+CGG + tig0019521:19408-19427 Msa1374550:intergenic 50.0%
!! GGCACTGGTGTTTGTGTTTC+TGG + tig0019521:18936-18955 Msa1374550:intergenic 50.0%
GAGTCATAACTCGTTGGCAC+TGG + tig0019521:18951-18970 Msa1374550:intergenic 50.0%
AAACTCACCGTCGGAGTTGA+CGG - tig0019521:18996-19015 Msa1374550:CDS 50.0%
TTTCCTTCCGTCAACTCCGA+CGG + tig0019521:19006-19025 Msa1374550:intergenic 50.0%
! AGGAAAGGTAATGGCAACGG+CGG - tig0019521:19020-19039 Msa1374550:CDS 50.0%
!!! CAACGGCGGTTTTGTTTCGA+CGG - tig0019521:19034-19053 Msa1374550:CDS 50.0%
TGTTGCGAGTTTATCGCTGC+CGG - tig0019521:19119-19138 Msa1374550:CDS 50.0%
TTTATCGCTGCCGGTGAAGA+AGG - tig0019521:19128-19147 Msa1374550:CDS 50.0%
GTTCCGGTGACAGTTACAAG+CGG + tig0019521:19177-19196 Msa1374550:intergenic 50.0%
! CTGTGGTGATGATATTGCGG+CGG + tig0019521:19266-19285 Msa1374550:intergenic 50.0%
CCGGAGTTGCAAGATGATGA+TGG + tig0019521:19346-19365 Msa1374550:intergenic 50.0%
TCATCATCTTGCAACTCCGG+TGG - tig0019521:19346-19365 Msa1374550:CDS 50.0%
TTCTCTGCTCATTCCACCAC+CGG + tig0019521:19408-19427 Msa1374550:intergenic 50.0%
GTCGGAGTTGACGGAAGGAA+AGG - tig0019521:19005-19024 Msa1374550:CDS 55.0%
!!! GCGGTTTTGTTTCGACGGTG+AGG - tig0019521:19039-19058 Msa1374550:CDS 55.0%
! AATCACGCCGTTAGCTTCGG+TGG - tig0019521:19080-19099 Msa1374550:CDS 55.0%
TCTCCTTGCGGTGGAAGTTC+CGG + tig0019521:19193-19212 Msa1374550:intergenic 55.0%
TTCCACCGCAAGGAGATCGA+TGG - tig0019521:19197-19216 Msa1374550:CDS 55.0%
TGATGATATTGCGGCGGTGG+AGG + tig0019521:19260-19279 Msa1374550:intergenic 55.0%
! TGGTGATGATATTGCGGCGG+TGG + tig0019521:19263-19282 Msa1374550:intergenic 55.0%
TGAAGGTAACCGGCTGTGGA+AGG + tig0019521:19323-19342 Msa1374550:intergenic 55.0%
ATGGTGAAGGTAACCGGCTG+TGG + tig0019521:19327-19346 Msa1374550:intergenic 55.0%
AACGGTCTGTGATGTGCCAC+CGG + tig0019521:19365-19384 Msa1374550:intergenic 55.0%
TCAAACCCTAGCAGTAGCGG+TGG - tig0019521:19440-19459 Msa1374550:CDS 55.0%
GTCGGAGTTGACGGAAGGAA+AGG - tig0019521:19005-19024 Msa1374550:CDS 55.0%
!!! GCGGTTTTGTTTCGACGGTG+AGG - tig0019521:19039-19058 Msa1374550:CDS 55.0%
! AATCACGCCGTTAGCTTCGG+TGG - tig0019521:19080-19099 Msa1374550:CDS 55.0%
TCTCCTTGCGGTGGAAGTTC+CGG + tig0019521:19193-19212 Msa1374550:intergenic 55.0%
TTCCACCGCAAGGAGATCGA+TGG - tig0019521:19197-19216 Msa1374550:CDS 55.0%
TGATGATATTGCGGCGGTGG+AGG + tig0019521:19260-19279 Msa1374550:intergenic 55.0%
! TGGTGATGATATTGCGGCGG+TGG + tig0019521:19263-19282 Msa1374550:intergenic 55.0%
TGAAGGTAACCGGCTGTGGA+AGG + tig0019521:19323-19342 Msa1374550:intergenic 55.0%
ATGGTGAAGGTAACCGGCTG+TGG + tig0019521:19327-19346 Msa1374550:intergenic 55.0%
AACGGTCTGTGATGTGCCAC+CGG + tig0019521:19365-19384 Msa1374550:intergenic 55.0%
TCAAACCCTAGCAGTAGCGG+TGG - tig0019521:19440-19459 Msa1374550:CDS 55.0%
TCACCGTCGGAGTTGACGGA+AGG - tig0019521:19000-19019 Msa1374550:CDS 60.0%
AGCGTGGCCACCGAAGCTAA+CGG + tig0019521:19090-19109 Msa1374550:intergenic 60.0%
TTCGGTGGCCACGCTGTTGA+CGG - tig0019521:19095-19114 Msa1374550:CDS 60.0%
CGCAACAACCGTCAACAGCG+TGG + tig0019521:19106-19125 Msa1374550:intergenic 60.0%
GCGCCGCTTGTAACTGTCAC+CGG - tig0019521:19171-19190 Msa1374550:CDS 60.0%
TCACCGGAACTTCCACCGCA+AGG - tig0019521:19187-19206 Msa1374550:CDS 60.0%
CACCATCGATCTCCTTGCGG+TGG + tig0019521:19202-19221 Msa1374550:intergenic 60.0%
TGATATTGCGGCGGTGGAGG+TGG + tig0019521:19257-19276 Msa1374550:intergenic 60.0%
! GGAGGAGCACGGTGGTAGTA+AGG + tig0019521:19302-19321 Msa1374550:intergenic 60.0%
AGGTAACCGGCTGTGGAAGG+AGG + tig0019521:19320-19339 Msa1374550:intergenic 60.0%
GGTGGCACATCACAGACCGT+TGG - tig0019521:19364-19383 Msa1374550:CDS 60.0%
AACCCTAGCAGTAGCGGTGG+AGG - tig0019521:19443-19462 Msa1374550:CDS 60.0%
CACCTCCACCGCTACTGCTA+GGG + tig0019521:19448-19467 Msa1374550:intergenic 60.0%
!! GTAGCGGTGGTGGTGGATCA+AGG - tig0019521:19477-19496 Msa1374550:CDS 60.0%
TCACCGTCGGAGTTGACGGA+AGG - tig0019521:19000-19019 Msa1374550:CDS 60.0%
AGCGTGGCCACCGAAGCTAA+CGG + tig0019521:19090-19109 Msa1374550:intergenic 60.0%
TTCGGTGGCCACGCTGTTGA+CGG - tig0019521:19095-19114 Msa1374550:CDS 60.0%
CGCAACAACCGTCAACAGCG+TGG + tig0019521:19106-19125 Msa1374550:intergenic 60.0%
GCGCCGCTTGTAACTGTCAC+CGG - tig0019521:19171-19190 Msa1374550:CDS 60.0%
TCACCGGAACTTCCACCGCA+AGG - tig0019521:19187-19206 Msa1374550:CDS 60.0%
CACCATCGATCTCCTTGCGG+TGG + tig0019521:19202-19221 Msa1374550:intergenic 60.0%
TGATATTGCGGCGGTGGAGG+TGG + tig0019521:19257-19276 Msa1374550:intergenic 60.0%
! GGAGGAGCACGGTGGTAGTA+AGG + tig0019521:19302-19321 Msa1374550:intergenic 60.0%
AGGTAACCGGCTGTGGAAGG+AGG + tig0019521:19320-19339 Msa1374550:intergenic 60.0%
GGTGGCACATCACAGACCGT+TGG - tig0019521:19364-19383 Msa1374550:CDS 60.0%
AACCCTAGCAGTAGCGGTGG+AGG - tig0019521:19443-19462 Msa1374550:CDS 60.0%
CACCTCCACCGCTACTGCTA+GGG + tig0019521:19448-19467 Msa1374550:intergenic 60.0%
!! GTAGCGGTGGTGGTGGATCA+AGG - tig0019521:19477-19496 Msa1374550:CDS 60.0%
! GTGGAGGTGGTGGCTGTGAC+CGG + tig0019521:19244-19263 Msa1374550:intergenic 65.0%
TATTGCGGCGGTGGAGGTGG+TGG + tig0019521:19254-19273 Msa1374550:intergenic 65.0%
! CTGTGGAAGGAGGAGCACGG+TGG + tig0019521:19310-19329 Msa1374550:intergenic 65.0%
CGGCTGTGGAAGGAGGAGCA+CGG + tig0019521:19313-19332 Msa1374550:intergenic 65.0%
CGTGCTCCTCCTTCCACAGC+CGG - tig0019521:19311-19330 Msa1374550:CDS 65.0%
GCAGCAGCAGGGAGAGCCAA+CGG + tig0019521:19383-19402 Msa1374550:intergenic 65.0%
! GCTCTCCCTGCTGCTGCTTC+CGG - tig0019521:19386-19405 Msa1374550:CDS 65.0%
CACCACCGGAAGCAGCAGCA+GGG + tig0019521:19394-19413 Msa1374550:intergenic 65.0%
CCACCTCCACCGCTACTGCT+AGG + tig0019521:19449-19468 Msa1374550:intergenic 65.0%
CCTAGCAGTAGCGGTGGAGG+TGG - tig0019521:19446-19465 Msa1374550:CDS 65.0%
AGCAGTAGCGGTGGAGGTGG+TGG - tig0019521:19449-19468 Msa1374550:CDS 65.0%
! AGTAGCGGTGGAGGTGGTGG+TGG - tig0019521:19452-19471 Msa1374550:CDS 65.0%
!! GGAGGTGGTGGTGGTGGTAG+CGG - tig0019521:19461-19480 Msa1374550:CDS 65.0%
! GTGGAGGTGGTGGCTGTGAC+CGG + tig0019521:19244-19263 Msa1374550:intergenic 65.0%
TATTGCGGCGGTGGAGGTGG+TGG + tig0019521:19254-19273 Msa1374550:intergenic 65.0%
! CTGTGGAAGGAGGAGCACGG+TGG + tig0019521:19310-19329 Msa1374550:intergenic 65.0%
CGGCTGTGGAAGGAGGAGCA+CGG + tig0019521:19313-19332 Msa1374550:intergenic 65.0%
CGTGCTCCTCCTTCCACAGC+CGG - tig0019521:19311-19330 Msa1374550:CDS 65.0%
GCAGCAGCAGGGAGAGCCAA+CGG + tig0019521:19383-19402 Msa1374550:intergenic 65.0%
! GCTCTCCCTGCTGCTGCTTC+CGG - tig0019521:19386-19405 Msa1374550:CDS 65.0%
CACCACCGGAAGCAGCAGCA+GGG + tig0019521:19394-19413 Msa1374550:intergenic 65.0%
CCACCTCCACCGCTACTGCT+AGG + tig0019521:19449-19468 Msa1374550:intergenic 65.0%
CCTAGCAGTAGCGGTGGAGG+TGG - tig0019521:19446-19465 Msa1374550:CDS 65.0%
AGCAGTAGCGGTGGAGGTGG+TGG - tig0019521:19449-19468 Msa1374550:CDS 65.0%
! AGTAGCGGTGGAGGTGGTGG+TGG - tig0019521:19452-19471 Msa1374550:CDS 65.0%
!! GGAGGTGGTGGTGGTGGTAG+CGG - tig0019521:19461-19480 Msa1374550:CDS 65.0%
! CTCCCTGCTGCTGCTTCCGG+TGG - tig0019521:19389-19408 Msa1374550:CDS 70.0%
CCACCACCGGAAGCAGCAGC+AGG + tig0019521:19395-19414 Msa1374550:intergenic 70.0%
! CCTGCTGCTGCTTCCGGTGG+TGG - tig0019521:19392-19411 Msa1374550:CDS 70.0%
!! AGCGGTGGAGGTGGTGGTGG+TGG - tig0019521:19455-19474 Msa1374550:CDS 70.0%
!! GGTGGTGGTGGTGGTAGCGG+TGG - tig0019521:19464-19483 Msa1374550:CDS 70.0%
!! GGTGGTGGTGGTAGCGGTGG+TGG - tig0019521:19467-19486 Msa1374550:CDS 70.0%
!! GGTGGTGGTAGCGGTGGTGG+TGG - tig0019521:19470-19489 Msa1374550:CDS 70.0%
! CTCCCTGCTGCTGCTTCCGG+TGG - tig0019521:19389-19408 Msa1374550:CDS 70.0%
CCACCACCGGAAGCAGCAGC+AGG + tig0019521:19395-19414 Msa1374550:intergenic 70.0%
! CCTGCTGCTGCTTCCGGTGG+TGG - tig0019521:19392-19411 Msa1374550:CDS 70.0%
!! AGCGGTGGAGGTGGTGGTGG+TGG - tig0019521:19455-19474 Msa1374550:CDS 70.0%
!! GGTGGTGGTGGTGGTAGCGG+TGG - tig0019521:19464-19483 Msa1374550:CDS 70.0%
!! GGTGGTGGTGGTAGCGGTGG+TGG - tig0019521:19467-19486 Msa1374550:CDS 70.0%
!! GGTGGTGGTAGCGGTGGTGG+TGG - tig0019521:19470-19489 Msa1374550:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0019521 gene 18888 19691 18888 ID=Msa1374550;Name=Msa1374550
tig0019521 mRNA 18888 19691 18888 ID=Msa1374550-mRNA-1;Parent=Msa1374550;Name=Msa1374550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|267
tig0019521 exon 18888 19691 18888 ID=Msa1374550-mRNA-1:exon:3966;Parent=Msa1374550-mRNA-1
tig0019521 CDS 18888 19691 18888 ID=Msa1374550-mRNA-1:cds;Parent=Msa1374550-mRNA-1
Gene Sequence

>Msa1374550

ATGGAATTTGATGAACAAGAGGAACAAGAAGAGGAGATGGAGATTCCAGAAACACAAACACCAGTGCCAACGAGTTATGACTCACTTGGAAACTCAGCTTCACGTTCAAAACTCACCGTCGGAGTTGACGGAAGGAAAGGTAATGGCAACGGCGGTTTTGTTTCGACGGTGAGGTACCGAGAATGTCAGAAGAATCACGCCGTTAGCTTCGGTGGCCACGCTGTTGACGGTTGTTGCGAGTTTATCGCTGCCGGTGAAGAAGGAACACTTGAAGCTGTTATTTGCGCCGCTTGTAACTGTCACCGGAACTTCCACCGCAAGGAGATCGATGGTGAAACGGTTAGTTCATGTAACCGGTCACAGCCACCACCTCCACCGCCGCAATATCATCACCACAGCAATCAATTCTCGCCTTACTACCACCGTGCTCCTCCTTCCACAGCCGGTTACCTTCACCATCATCATCTTGCAACTCCGGTGGCACATCACAGACCGTTGGCTCTCCCTGCTGCTGCTTCCGGTGGTGGAATGAGCAGAGAAGATGATGATATCTCAAACCCTAGCAGTAGCGGTGGAGGTGGTGGTGGTGGTAGCGGTGGTGGTGGATCAAGGAAGAGATTCAGAACAAAATTCACTCAGGAACAGAAAGAGAAGTTGCTGGCTTTTGCTGAAGAACATGGTTGGAGAATTCAAAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAGAATTGTATCAAGAGAAATGTTCTTAAAGTCTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA

Protein sequence

>Msa1374550

MEFDEQEEQEEEMEIPETQTPVPTSYDSLGNSASRSKLTVGVDGRKGNGNGGFVSTVRYRECQKNHAVSFGGHAVDGCCEFIAAGEEGTLEAVICAACNCHRNFHRKEIDGETVSSCNRSQPPPPPPQYHHHSNQFSPYYHRAPPSTAGYLHHHHLATPVAHHRPLALPAAASGGGMSREDDDISNPSSSGGGGGGGSGGGGSRKRFRTKFTQEQKEKLLAFAEEHGWRIQKQDEAAIEQFCAENCIKRNVLKVWMHNNKNTLGKKP*