Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213560 | A0A396IGM7 | 56.667 | 90 | 18 | 4 | 157 | 245 | 2 | 71 | 7.73e-19 | 88.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1213560 | Msa1331410 | 0.957542 | 2.110726e-115 | -8.615850e-47 |
| Msa1213560 | Msa1436000 | 0.955533 | 2.434572e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1213560 | MtrunA17_Chr4g0062151 | 56.667 | 90 | 18 | 4 | 157 | 245 | 2 | 71 | 1.49e-22 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 37 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTCTCAACGCGTTTC+TGG | 0.125137 | 8_1:+73703296 | Msa1213560:CDS |
| CCCTTTGTGAACCGTGATTT+TGG | 0.137323 | 8_1:-73704624 | None:intergenic |
| AAAATGGGGTTGTCCCAATT+TGG | 0.174546 | 8_1:-73703232 | None:intergenic |
| CATCTTAAGGCAAGTTCTTC+TGG | 0.193097 | 8_1:+73705963 | Msa1213560:CDS |
| TTGTCAATCTACAAAATTCT+AGG | 0.197709 | 8_1:+73703253 | Msa1213560:CDS |
| ACAAATCGTGTAGCCCAAAT+TGG | 0.206257 | 8_1:+73703218 | None:intergenic |
| AAATGGGGTTGTCCCAATTT+GGG | 0.361283 | 8_1:-73703231 | None:intergenic |
| TTGATGTTGAAGAAGCAAAA+AGG | 0.364210 | 8_1:+73705327 | Msa1213560:CDS |
| CTTCTTGCTAAGCAGCAAAA+AGG | 0.384348 | 8_1:+73704849 | Msa1213560:CDS |
| CAATCACACGTATGAGGAAT+AGG | 0.388822 | 8_1:-73705930 | None:intergenic |
| CTGCTTAGCAAGAAGCGGTT+TGG | 0.389010 | 8_1:-73704841 | None:intergenic |
| TGAATCTCACAAAGCACAAA+TGG | 0.402874 | 8_1:+73704248 | Msa1213560:CDS |
| TGCTAAGAAACAAGAAGTAA+AGG | 0.469325 | 8_1:+73704695 | Msa1213560:CDS |
| GCTAAGAAACAAGAAGTAAA+GGG | 0.470345 | 8_1:+73704696 | Msa1213560:CDS |
| TTGCTACAAGATGCATCTTA+AGG | 0.483577 | 8_1:+73705950 | Msa1213560:CDS |
| TGTCAATCTACAAAATTCTA+GGG | 0.486128 | 8_1:+73703254 | Msa1213560:CDS |
| ATGAGGAATAGGTATCCATT+TGG | 0.489970 | 8_1:-73705919 | None:intergenic |
| CAAATCGTGTAGCCCAAATT+GGG | 0.499013 | 8_1:+73703219 | None:intergenic |
| AAAGGAGAAGGAAGAGTTGG+AGG | 0.503994 | 8_1:+73706114 | Msa1213560:CDS |
| AGATGTCGAGCGGGCCTAGA+CGG | 0.510961 | 8_1:-73703418 | None:intergenic |
| TAACAGAAAAGTATGCCAAA+TGG | 0.512901 | 8_1:+73705904 | Msa1213560:intron |
| TCTACAAAATTCTAGGGTTG+CGG | 0.519052 | 8_1:+73703260 | Msa1213560:CDS |
| TTGTAGCAATCACACGTATG+AGG | 0.521163 | 8_1:-73705936 | None:intergenic |
| GCTCGACATCTTTCTTCGCA+AGG | 0.521379 | 8_1:+73703430 | Msa1213560:CDS |
| CGAGAATGCTTCAAAGGAGA+AGG | 0.534249 | 8_1:+73706102 | Msa1213560:CDS |
| TTCAAAGGAGAAGGAAGAGT+TGG | 0.536101 | 8_1:+73706111 | Msa1213560:CDS |
| GAATCTCACAAAGCACAAAT+GGG | 0.540471 | 8_1:+73704249 | Msa1213560:CDS |
| CCAAAATCACGGTTCACAAA+GGG | 0.540981 | 8_1:+73704624 | Msa1213560:CDS |
| AGAAACGCGTTGAGAGAGAA+AGG | 0.555662 | 8_1:-73703294 | None:intergenic |
| GTTTCTCGAGAATGCTTCAA+AGG | 0.559657 | 8_1:+73706096 | Msa1213560:intron |
| GCCAAAATCACGGTTCACAA+AGG | 0.562559 | 8_1:+73704623 | Msa1213560:CDS |
| GCAAGACACAGTGTCAAAGA+AGG | 0.570099 | 8_1:-73704732 | None:intergenic |
| TGCGAAGAAAGATGTCGAGC+GGG | 0.578508 | 8_1:-73703427 | None:intergenic |
| TTACTAAGAAGCCAAAATCA+CGG | 0.661021 | 8_1:+73704613 | Msa1213560:CDS |
| CAAAGGGAAACATTCGTGTG+TGG | 0.661671 | 8_1:+73704640 | Msa1213560:CDS |
| GGCTGATATTGATAGTGATG+TGG | 0.669563 | 8_1:+73706135 | Msa1213560:CDS |
| TTGCGAAGAAAGATGTCGAG+CGG | 0.685698 | 8_1:-73703428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAATAAA+AGG | - | chr8_1:73704129-73704148 | None:intergenic | 0.0% |
| !!! | TATTATTATTATTATTATTT+TGG | + | chr8_1:73704182-73704201 | Msa1213560:intron | 0.0% |
| !! | AAAATAATAGAGAATGAAAT+GGG | - | chr8_1:73705117-73705136 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGATTGACAAAAT+GGG | - | chr8_1:73703250-73703269 | None:intergenic | 20.0% |
| !!! | AATTTTGTAGATTGACAAAA+TGG | - | chr8_1:73703251-73703270 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCATTTCTTCTT+CGG | + | chr8_1:73703326-73703345 | Msa1213560:intron | 20.0% |
| !! | TGAAAAAAAAAATGCGAATA+AGG | - | chr8_1:73703381-73703400 | None:intergenic | 20.0% |
| !!! | GCATTTTTTTTTTCATTTTC+AGG | + | chr8_1:73703386-73703405 | Msa1213560:intron | 20.0% |
| !! | ACTATCAATATAAATAAGTG+TGG | - | chr8_1:73703549-73703568 | None:intergenic | 20.0% |
| !! | ATTTGTTCTGTAATTTATGT+TGG | + | chr8_1:73703572-73703591 | Msa1213560:intron | 20.0% |
| !! | TTTGTTCTGTAATTTATGTT+GGG | + | chr8_1:73703573-73703592 | Msa1213560:intron | 20.0% |
| !! | TAATTTATGTTGGGATATTA+GGG | + | chr8_1:73703582-73703601 | Msa1213560:intron | 20.0% |
| !!! | ATTTGTTCTGTAGTTTATTT+TGG | + | chr8_1:73703704-73703723 | Msa1213560:intron | 20.0% |
| !!! | TTTGTTCTGTAGTTTATTTT+GGG | + | chr8_1:73703705-73703724 | Msa1213560:intron | 20.0% |
| !!! | TAGTTTATTTTGGGATATTA+GGG | + | chr8_1:73703714-73703733 | Msa1213560:intron | 20.0% |
| !! | ACAATCAAATAAAATAAGTG+TGG | - | chr8_1:73704067-73704086 | None:intergenic | 20.0% |
| !! | TTCTGTTCTATAATTTATCT+TGG | + | chr8_1:73704086-73704105 | Msa1213560:intron | 20.0% |
| !! | TCTGTTCTATAATTTATCTT+GGG | + | chr8_1:73704087-73704106 | Msa1213560:intron | 20.0% |
| !! | TGAAAGTTAAAAAAAAGGAA+AGG | - | chr8_1:73704495-73704514 | None:intergenic | 20.0% |
| !! | ATGGTTGAAAGTTAAAAAAA+AGG | - | chr8_1:73704500-73704519 | None:intergenic | 20.0% |
| !! | AAAATAATTGTATCTTCACA+TGG | - | chr8_1:73705000-73705019 | None:intergenic | 20.0% |
| !! | CAAAATAATAGAGAATGAAA+TGG | - | chr8_1:73705118-73705137 | None:intergenic | 20.0% |
| !!! | TTTCATTCTCTATTATTTTG+TGG | + | chr8_1:73705118-73705137 | Msa1213560:intron | 20.0% |
| !! | TTGATCAAATAAGAAATGAA+GGG | - | chr8_1:73705209-73705228 | None:intergenic | 20.0% |
| !! | TTTGATCAAATAAGAAATGA+AGG | - | chr8_1:73705210-73705229 | None:intergenic | 20.0% |
| !! | TTATAAAACGGCTTATAATT+TGG | + | chr8_1:73705718-73705737 | Msa1213560:intron | 20.0% |
| !! | TATAAAACGGCTTATAATTT+GGG | + | chr8_1:73705719-73705738 | Msa1213560:intron | 20.0% |
| !! | CTTAAAAAAAGAAAAAGATG+AGG | - | chr8_1:73705830-73705849 | None:intergenic | 20.0% |
| !! | AAATCTTAACTATGTTTATG+AGG | + | chr8_1:73705986-73706005 | Msa1213560:intron | 20.0% |
| !! | TTTTGTAGATTGACAAAATG+GGG | - | chr8_1:73703249-73703268 | None:intergenic | 25.0% |
| ! | TTGTCAATCTACAAAATTCT+AGG | + | chr8_1:73703253-73703272 | Msa1213560:CDS | 25.0% |
| ! | TGTCAATCTACAAAATTCTA+GGG | + | chr8_1:73703254-73703273 | Msa1213560:CDS | 25.0% |
| !!! | TATTTTGGCTTCTTTTTTAG+AGG | + | chr8_1:73703479-73703498 | Msa1213560:intron | 25.0% |
| ! | GTAATTTATGTTGGGATATT+AGG | + | chr8_1:73703581-73703600 | Msa1213560:intron | 25.0% |
| ! | AAAAAAAAGTCCCAATTCAA+AGG | - | chr8_1:73703615-73703634 | None:intergenic | 25.0% |
| !!! | GTAGTTTATTTTGGGATATT+AGG | + | chr8_1:73703713-73703732 | Msa1213560:intron | 25.0% |
| ! | AAAAAACAGTCACAATTCTA+AGG | - | chr8_1:73703747-73703766 | None:intergenic | 25.0% |
| ! | ACAATCAACAAAAATAAGTG+TGG | - | chr8_1:73703821-73703840 | None:intergenic | 25.0% |
| ! | TTCTGTTCTGTAATTTATCT+TGG | + | chr8_1:73703840-73703859 | Msa1213560:intron | 25.0% |
| ! | TCTGTTCTGTAATTTATCTT+GGG | + | chr8_1:73703841-73703860 | Msa1213560:intron | 25.0% |
| ! | TTCTGTTCTGTAATTTATCT+TGG | + | chr8_1:73703840-73703859 | Msa1213560:intron | 25.0% |
| ! | TCTGTTCTGTAATTTATCTT+GGG | + | chr8_1:73703841-73703860 | Msa1213560:intron | 25.0% |
| ! | AAAAAACAGTCACAATTTAG+AGG | - | chr8_1:73703994-73704013 | None:intergenic | 25.0% |
| !!! | CACATTGTTTTAAAGTCAAA+AGG | - | chr8_1:73704311-73704330 | None:intergenic | 25.0% |
| ! | TTGTTAATATGCACATAAGT+TGG | + | chr8_1:73704370-73704389 | Msa1213560:intron | 25.0% |
| ! | TTGCTAAGAAACAAAAAGTA+GGG | + | chr8_1:73704790-73704809 | Msa1213560:CDS | 25.0% |
| !!! | AGTTTTATTGAATGCTGTAA+TGG | + | chr8_1:73704880-73704899 | Msa1213560:intron | 25.0% |
| ! | TTTGCAGTTAAACAAAAAGT+AGG | + | chr8_1:73704918-73704937 | Msa1213560:intron | 25.0% |
| ! | TTGCAGTTAAACAAAAAGTA+GGG | + | chr8_1:73704919-73704938 | Msa1213560:intron | 25.0% |
| !! | AACTTGCATTTTCATAAAAC+AGG | - | chr8_1:73705029-73705048 | None:intergenic | 25.0% |
| !! | AGGTTGCATTTTTATAAAAC+CGG | - | chr8_1:73705496-73705515 | None:intergenic | 25.0% |
| ! | GAGTTAATATGCATATAAGT+TGG | + | chr8_1:73705523-73705542 | Msa1213560:intron | 25.0% |
| ! | GCTTCATTGGTATTATAAAA+CGG | + | chr8_1:73705706-73705725 | Msa1213560:intron | 25.0% |
| !! | TCTCAAAACGACTTATATTT+TGG | + | chr8_1:73705753-73705772 | Msa1213560:intron | 25.0% |
| !!! | GATGTCTTCTATTTTGTTTT+TGG | + | chr8_1:73705796-73705815 | Msa1213560:intron | 25.0% |
| ! | AAGGGTGAGATAATTTAATA+TGG | - | chr8_1:73705859-73705878 | None:intergenic | 25.0% |
| ! | TCAAAAAATAAGAAGCGAAA+GGG | - | chr8_1:73705877-73705896 | None:intergenic | 25.0% |
| ! | TTCAAAAAATAAGAAGCGAA+AGG | - | chr8_1:73705878-73705897 | None:intergenic | 25.0% |
| ! | TATTTCAAAAGCAATGCTAA+AGG | - | chr8_1:73706012-73706031 | None:intergenic | 25.0% |
| ! | ATTCGAATCTTCTCGTATTT+TGG | + | chr8_1:73703464-73703483 | Msa1213560:intron | 30.0% |
| CTGTTCTGTAATTTATCTTG+GGG | + | chr8_1:73703842-73703861 | Msa1213560:intron | 30.0% | |
| CAAAAACAGTCGCAATTTAA+AGG | - | chr8_1:73703883-73703902 | None:intergenic | 30.0% | |
| CTGTTCTGTAATTTATCTTG+GGG | + | chr8_1:73703842-73703861 | Msa1213560:intron | 30.0% | |
| !!! | TGAAGTTGAGTGTCTTTTTT+GGG | + | chr8_1:73704027-73704046 | Msa1213560:intron | 30.0% |
| ATAACATAACAGATGTGAAG+AGG | - | chr8_1:73704287-73704306 | None:intergenic | 30.0% | |
| TTCCCTATTATATCCTATTC+CGG | + | chr8_1:73704425-73704444 | Msa1213560:intron | 30.0% | |
| AAGGAAAGGCTTAAAAGATA+AGG | - | chr8_1:73704481-73704500 | None:intergenic | 30.0% | |
| !!! | AGTGTGAGGTTATTTTAACA+TGG | - | chr8_1:73704519-73704538 | None:intergenic | 30.0% |
| ! | AGATGAAAAATGAAAGTGTG+AGG | - | chr8_1:73704533-73704552 | None:intergenic | 30.0% |
| TTACTAAGAAGCCAAAATCA+CGG | + | chr8_1:73704613-73704632 | Msa1213560:CDS | 30.0% | |
| !!! | ACTTCATTCTTGTTTTTTGC+AGG | - | chr8_1:73704675-73704694 | None:intergenic | 30.0% |
| TGCTAAGAAACAAGAAGTAA+AGG | + | chr8_1:73704695-73704714 | Msa1213560:CDS | 30.0% | |
| GCTAAGAAACAAGAAGTAAA+GGG | + | chr8_1:73704696-73704715 | Msa1213560:CDS | 30.0% | |
| GTTGCTAAGAAACAAAAAGT+AGG | + | chr8_1:73704789-73704808 | Msa1213560:CDS | 30.0% | |
| TGCTAAGAAACAAAAAGTAG+GGG | + | chr8_1:73704791-73704810 | Msa1213560:CDS | 30.0% | |
| TGCAGTTAAACAAAAAGTAG+GGG | + | chr8_1:73704920-73704939 | Msa1213560:intron | 30.0% | |
| !!! | GAAGGGTGGTTATTTTAATA+TGG | - | chr8_1:73705192-73705211 | None:intergenic | 30.0% |
| ATCAAATAAGAAATGAAGGG+TGG | - | chr8_1:73705206-73705225 | None:intergenic | 30.0% | |
| TTGATGTTGAAGAAGCAAAA+AGG | + | chr8_1:73705327-73705346 | Msa1213560:CDS | 30.0% | |
| TCTAAATCATAACAGATGGA+TGG | - | chr8_1:73705432-73705451 | None:intergenic | 30.0% | |
| TCAGTCTAAATCATAACAGA+TGG | - | chr8_1:73705436-73705455 | None:intergenic | 30.0% | |
| ! | GAAAGAATTTTGTCTTCACA+TGG | - | chr8_1:73705467-73705486 | None:intergenic | 30.0% |
| ACAAAATTCTTTCTGCATTC+CGG | + | chr8_1:73705474-73705493 | Msa1213560:intron | 30.0% | |
| TGCATATTAACTCAATCAAG+AGG | - | chr8_1:73705516-73705535 | None:intergenic | 30.0% | |
| !! | GTTTATCTTGTTATTGTTGC+TGG | + | chr8_1:73705550-73705569 | Msa1213560:intron | 30.0% |
| AAACGACTTATCATTTGGAA+TGG | - | chr8_1:73705609-73705628 | None:intergenic | 30.0% | |
| CATCAAAACGACTTATCATT+TGG | - | chr8_1:73705614-73705633 | None:intergenic | 30.0% | |
| !! | CAAATGATAAGTCGTTTTGA+TGG | + | chr8_1:73705612-73705631 | Msa1213560:intron | 30.0% |
| ! | TACCAATGAAGCATTAATGA+AGG | - | chr8_1:73705698-73705717 | None:intergenic | 30.0% |
| !!! | CGACTTATATTTTGGTATTG+AGG | + | chr8_1:73705761-73705780 | Msa1213560:intron | 30.0% |
| ! | TAACAGAAAAGTATGCCAAA+TGG | + | chr8_1:73705904-73705923 | Msa1213560:intron | 30.0% |
| ! | TGGTTTGGAAATTGGTATTA+TGG | - | chr8_1:73706073-73706092 | None:intergenic | 30.0% |
| !! | TCTACAAAATTCTAGGGTTG+CGG | + | chr8_1:73703260-73703279 | Msa1213560:CDS | 35.0% |
| GGAATCAATGTAAAAACCAG+CGG | - | chr8_1:73703360-73703379 | None:intergenic | 35.0% | |
| AGGGTTTCAAACCTTTGAAT+TGG | + | chr8_1:73703601-73703620 | Msa1213560:intron | 35.0% | |
| GGGTTTCAAACCTTTGAATT+GGG | + | chr8_1:73703602-73703621 | Msa1213560:intron | 35.0% | |
| !!! | GTGAAGTTGAGTGTCTTTTT+TGG | + | chr8_1:73703646-73703665 | Msa1213560:intron | 35.0% |
| TGAATCTCACAAAGCACAAA+TGG | + | chr8_1:73704248-73704267 | Msa1213560:CDS | 35.0% | |
| GAATCTCACAAAGCACAAAT+GGG | + | chr8_1:73704249-73704268 | Msa1213560:CDS | 35.0% | |
| ! | AGTTTGCATTTTCGTACAAC+AGG | - | chr8_1:73704341-73704360 | None:intergenic | 35.0% |
| GACCGGAATAGGATATAATA+GGG | - | chr8_1:73704430-73704449 | None:intergenic | 35.0% | |
| AGACCGGAATAGGATATAAT+AGG | - | chr8_1:73704431-73704450 | None:intergenic | 35.0% | |
| CAACAAACAGAATAGAAGAC+CGG | - | chr8_1:73704447-73704466 | None:intergenic | 35.0% | |
| GCTAAGAAACAAAAAGTAGG+GGG | + | chr8_1:73704792-73704811 | Msa1213560:CDS | 35.0% | |
| GCAGTTAAACAAAAAGTAGG+GGG | + | chr8_1:73704921-73704940 | Msa1213560:intron | 35.0% | |
| TTTATCTTGCCATTGTTGCT+AGG | + | chr8_1:73705077-73705096 | Msa1213560:intron | 35.0% | |
| AATGGAGGGAGCAATTAAAT+GGG | - | chr8_1:73705591-73705610 | None:intergenic | 35.0% | |
| ! | GACTTATCATTTGGAATGGA+GGG | - | chr8_1:73705605-73705624 | None:intergenic | 35.0% |
| GTCCTTCATTAATGCTTCAT+TGG | + | chr8_1:73705693-73705712 | Msa1213560:intron | 35.0% | |
| ATGAGGAATAGGTATCCATT+TGG | - | chr8_1:73705922-73705941 | None:intergenic | 35.0% | |
| TTGCTACAAGATGCATCTTA+AGG | + | chr8_1:73705950-73705969 | Msa1213560:CDS | 35.0% | |
| !! | GAAACTGTTGGTTTGGAAAT+TGG | - | chr8_1:73706081-73706100 | None:intergenic | 35.0% |
| AAATGGGGTTGTCCCAATTT+GGG | - | chr8_1:73703234-73703253 | None:intergenic | 40.0% | |
| AAAATGGGGTTGTCCCAATT+TGG | - | chr8_1:73703235-73703254 | None:intergenic | 40.0% | |
| ACAGAATAGAAGACCGGAAT+AGG | - | chr8_1:73704441-73704460 | None:intergenic | 40.0% | |
| CCAAAATCACGGTTCACAAA+GGG | + | chr8_1:73704624-73704643 | Msa1213560:CDS | 40.0% | |
| !! | TTTTGCTGCTTAGCAAGAAG+CGG | - | chr8_1:73704849-73704868 | None:intergenic | 40.0% |
| CTTCTTGCTAAGCAGCAAAA+AGG | + | chr8_1:73704849-73704868 | Msa1213560:CDS | 40.0% | |
| !! | CACATGGTATTGATGTCAAC+AGG | - | chr8_1:73704984-73705003 | None:intergenic | 40.0% |
| ! | GCAAAAAGTAAGAAGCGTAG+AGG | + | chr8_1:73705293-73705312 | Msa1213560:CDS | 40.0% |
| ! | CAGCATCGAGTAAACTTACT+TGG | - | chr8_1:73705354-73705373 | None:intergenic | 40.0% |
| GAATGGAGGGAGCAATTAAA+TGG | - | chr8_1:73705592-73705611 | None:intergenic | 40.0% | |
| ! | CGACTTATCATTTGGAATGG+AGG | - | chr8_1:73705606-73705625 | None:intergenic | 40.0% |
| CAATCACACGTATGAGGAAT+AGG | - | chr8_1:73705933-73705952 | None:intergenic | 40.0% | |
| TTGTAGCAATCACACGTATG+AGG | - | chr8_1:73705939-73705958 | None:intergenic | 40.0% | |
| CATCTTAAGGCAAGTTCTTC+TGG | + | chr8_1:73705963-73705982 | Msa1213560:CDS | 40.0% | |
| ! | TTCTCGAGAAACTGTTGGTT+TGG | - | chr8_1:73706088-73706107 | None:intergenic | 40.0% |
| AAGCATTCTCGAGAAACTGT+TGG | - | chr8_1:73706093-73706112 | None:intergenic | 40.0% | |
| GTTTCTCGAGAATGCTTCAA+AGG | + | chr8_1:73706096-73706115 | Msa1213560:intron | 40.0% | |
| TTCAAAGGAGAAGGAAGAGT+TGG | + | chr8_1:73706111-73706130 | Msa1213560:CDS | 40.0% | |
| !! | GGCTGATATTGATAGTGATG+TGG | + | chr8_1:73706135-73706154 | Msa1213560:CDS | 40.0% |
| AGAAACGCGTTGAGAGAGAA+AGG | - | chr8_1:73703297-73703316 | None:intergenic | 45.0% | |
| TTTCTCTCTCAACGCGTTTC+TGG | + | chr8_1:73703296-73703315 | Msa1213560:CDS | 45.0% | |
| TTGCGAAGAAAGATGTCGAG+CGG | - | chr8_1:73703431-73703450 | None:intergenic | 45.0% | |
| GCCAAAATCACGGTTCACAA+AGG | + | chr8_1:73704623-73704642 | Msa1213560:CDS | 45.0% | |
| ! | CCCTTTGTGAACCGTGATTT+TGG | - | chr8_1:73704627-73704646 | None:intergenic | 45.0% |
| CAAAGGGAAACATTCGTGTG+TGG | + | chr8_1:73704640-73704659 | Msa1213560:CDS | 45.0% | |
| GCAAGACACAGTGTCAAAGA+AGG | - | chr8_1:73704735-73704754 | None:intergenic | 45.0% | |
| TTGCCATTGTTGCTAGGCTT+GGG | + | chr8_1:73705083-73705102 | Msa1213560:intron | 45.0% | |
| TTTCCCAAGCCTAGCAACAA+TGG | - | chr8_1:73705089-73705108 | None:intergenic | 45.0% | |
| CGAGAATGCTTCAAAGGAGA+AGG | + | chr8_1:73706102-73706121 | Msa1213560:CDS | 45.0% | |
| AAAGGAGAAGGAAGAGTTGG+AGG | + | chr8_1:73706114-73706133 | Msa1213560:CDS | 45.0% | |
| ! | TTCTTCGGTTTTCTTGCCGC+TGG | + | chr8_1:73703341-73703360 | Msa1213560:intron | 50.0% |
| ! | TCAGGCGTTTTTCTCCGTCT+AGG | + | chr8_1:73703404-73703423 | Msa1213560:intron | 50.0% |
| TGCGAAGAAAGATGTCGAGC+GGG | - | chr8_1:73703430-73703449 | None:intergenic | 50.0% | |
| GCTCGACATCTTTCTTCGCA+AGG | + | chr8_1:73703430-73703449 | Msa1213560:CDS | 50.0% | |
| CTGCTTAGCAAGAAGCGGTT+TGG | - | chr8_1:73704844-73704863 | None:intergenic | 50.0% | |
| CTTGCCATTGTTGCTAGGCT+TGG | + | chr8_1:73705082-73705101 | Msa1213560:intron | 50.0% | |
| AGATGTCGAGCGGGCCTAGA+CGG | - | chr8_1:73703421-73703440 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 73703229 | 73706162 | 73703229 | ID=Msa1213560;Name=Msa1213560 |
| chr8_1 | mRNA | 73703229 | 73706162 | 73703229 | ID=Msa1213560-mRNA-1;Parent=Msa1213560;Name=Msa1213560-mRNA-1;_AED=0.22;_eAED=0.32;_QI=0|0.5|0.14|1|0.66|0.42|7|0|245 |
| chr8_1 | exon | 73703229 | 73703317 | 73703229 | ID=Msa1213560-mRNA-1:exon:25176;Parent=Msa1213560-mRNA-1 |
| chr8_1 | exon | 73703408 | 73703451 | 73703408 | ID=Msa1213560-mRNA-1:exon:25177;Parent=Msa1213560-mRNA-1 |
| chr8_1 | exon | 73704241 | 73704270 | 73704241 | ID=Msa1213560-mRNA-1:exon:25178;Parent=Msa1213560-mRNA-1 |
| chr8_1 | exon | 73704571 | 73704876 | 73704571 | ID=Msa1213560-mRNA-1:exon:25179;Parent=Msa1213560-mRNA-1 |
| chr8_1 | exon | 73705241 | 73705354 | 73705241 | ID=Msa1213560-mRNA-1:exon:25180;Parent=Msa1213560-mRNA-1 |
| chr8_1 | exon | 73705910 | 73705998 | 73705910 | ID=Msa1213560-mRNA-1:exon:25181;Parent=Msa1213560-mRNA-1 |
| chr8_1 | exon | 73706097 | 73706162 | 73706097 | ID=Msa1213560-mRNA-1:exon:25182;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73703229 | 73703317 | 73703229 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73703408 | 73703451 | 73703408 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73704241 | 73704270 | 73704241 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73704571 | 73704876 | 73704571 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73705241 | 73705354 | 73705241 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73705910 | 73705998 | 73705910 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| chr8_1 | CDS | 73706097 | 73706162 | 73706097 | ID=Msa1213560-mRNA-1:cds;Parent=Msa1213560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
