Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436000 | RHN63793.1 | 56.667 | 90 | 18 | 4 | 147 | 235 | 2 | 71 | 1.92e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436000 | A0A396IGM7 | 56.667 | 90 | 18 | 4 | 147 | 235 | 2 | 71 | 9.15e-19 | 88.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1227740 | Msa1436000 | 0.801382 | 9.244712e-49 | -8.615850e-47 |
| Msa1331410 | Msa1436000 | 0.990960 | 3.487866e-185 | -8.615850e-47 |
| Msa1101580 | Msa1436000 | 0.805707 | 1.172096e-49 | -8.615850e-47 |
| Msa1213560 | Msa1436000 | 0.955533 | 2.434572e-113 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436000 | MtrunA17_Chr4g0062151 | 56.667 | 90 | 18 | 4 | 147 | 235 | 2 | 71 | 1.76e-22 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTCTCAACGCGTTTC+TGG | 0.125137 | tig0027833:+15730 | Msa1436000:CDS |
| CCCTTTGTGAACCGTGATTT+TGG | 0.137323 | tig0027833:-17058 | None:intergenic |
| AAAATGGGGTTGTCCCAATT+TGG | 0.174546 | tig0027833:-15666 | None:intergenic |
| CATCTTAAGGCAAGTTCTTC+TGG | 0.193097 | tig0027833:+18395 | Msa1436000:CDS |
| TTGTCAATCTACAAAATTCT+AGG | 0.197709 | tig0027833:+15687 | Msa1436000:CDS |
| ACAAATCGTGTAGCCCAAAT+TGG | 0.206257 | tig0027833:+15652 | None:intergenic |
| AAATGGGGTTGTCCCAATTT+GGG | 0.361283 | tig0027833:-15665 | None:intergenic |
| TTGATGTTGAAGAAGCAAAA+AGG | 0.364210 | tig0027833:+17759 | Msa1436000:CDS |
| CTTCTTGCTAAGCAGCAAAA+AGG | 0.384348 | tig0027833:+17283 | Msa1436000:CDS |
| CAATCACACGTATGAGGAAT+AGG | 0.388822 | tig0027833:-18362 | None:intergenic |
| CTGCTTAGCAAGAAGCGGTT+TGG | 0.389010 | tig0027833:-17275 | None:intergenic |
| TGCTAAGAAACAAGAAGTAA+AGG | 0.469325 | tig0027833:+17129 | Msa1436000:CDS |
| GCTAAGAAACAAGAAGTAAA+GGG | 0.470345 | tig0027833:+17130 | Msa1436000:CDS |
| TTGCTACAAGATGCATCTTA+AGG | 0.483577 | tig0027833:+18382 | Msa1436000:CDS |
| TGTCAATCTACAAAATTCTA+GGG | 0.486128 | tig0027833:+15688 | Msa1436000:CDS |
| ATGAGGAATAGGTATCCATT+TGG | 0.489970 | tig0027833:-18351 | None:intergenic |
| CAAATCGTGTAGCCCAAATT+GGG | 0.499013 | tig0027833:+15653 | None:intergenic |
| AAAGGAGAAGGAAGAGTTGG+AGG | 0.503994 | tig0027833:+18546 | Msa1436000:CDS |
| AGATGTCGAGCGGGCCTAGA+CGG | 0.510961 | tig0027833:-15853 | None:intergenic |
| TAACAGAAAAGTATGCCAAA+TGG | 0.512901 | tig0027833:+18336 | Msa1436000:intron |
| TCTACAAAATTCTAGGGTTG+CGG | 0.519052 | tig0027833:+15694 | Msa1436000:CDS |
| TTGTAGCAATCACACGTATG+AGG | 0.521163 | tig0027833:-18368 | None:intergenic |
| GCTCGACATCTTTCTTCGCA+AGG | 0.521379 | tig0027833:+15865 | Msa1436000:CDS |
| CGAGAATGCTTCAAAGGAGA+AGG | 0.534249 | tig0027833:+18534 | Msa1436000:CDS |
| TTCAAAGGAGAAGGAAGAGT+TGG | 0.536101 | tig0027833:+18543 | Msa1436000:CDS |
| CCAAAATCACGGTTCACAAA+GGG | 0.540981 | tig0027833:+17058 | Msa1436000:CDS |
| AGAAACGCGTTGAGAGAGAA+AGG | 0.555662 | tig0027833:-15728 | None:intergenic |
| GTTTCTCGAGAATGCTTCAA+AGG | 0.559657 | tig0027833:+18528 | Msa1436000:intron |
| GCCAAAATCACGGTTCACAA+AGG | 0.562559 | tig0027833:+17057 | Msa1436000:CDS |
| GCAAGACACAGTGTCAAAGA+AGG | 0.570099 | tig0027833:-17166 | None:intergenic |
| TGCGAAGAAAGATGTCGAGC+GGG | 0.578508 | tig0027833:-15862 | None:intergenic |
| TTACTAAGAAGCCAAAATCA+CGG | 0.661021 | tig0027833:+17047 | Msa1436000:CDS |
| CAAAGGGAAACATTCGTGTG+TGG | 0.661671 | tig0027833:+17074 | Msa1436000:CDS |
| GGCTGATATTGATAGTGATG+TGG | 0.669563 | tig0027833:+18567 | Msa1436000:CDS |
| TTGCGAAGAAAGATGTCGAG+CGG | 0.685698 | tig0027833:-15863 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAA+AGG | - | tig0027833:16564-16583 | None:intergenic | 0.0% |
| !!! | TATTATTATTATTATTATTT+TGG | + | tig0027833:16616-16635 | Msa1436000:intron | 0.0% |
| !! | AAAATAATAGAGAATGAAAT+GGG | - | tig0027833:17551-17570 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGATTGACAAAAT+GGG | - | tig0027833:15684-15703 | None:intergenic | 20.0% |
| !!! | AATTTTGTAGATTGACAAAA+TGG | - | tig0027833:15685-15704 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCATTTCTTCTT+CGG | + | tig0027833:15761-15780 | Msa1436000:intron | 20.0% |
| !! | TGAAAAAAAAAATGCGAATA+AGG | - | tig0027833:15816-15835 | None:intergenic | 20.0% |
| !!! | GCATTTTTTTTTTCATTTTC+AGG | + | tig0027833:15821-15840 | Msa1436000:intron | 20.0% |
| !! | ACTATCAATATAAATAAGTG+TGG | - | tig0027833:15984-16003 | None:intergenic | 20.0% |
| !! | ATTTGTTCTGTAATTTATGT+TGG | + | tig0027833:16007-16026 | Msa1436000:intron | 20.0% |
| !! | TTTGTTCTGTAATTTATGTT+GGG | + | tig0027833:16008-16027 | Msa1436000:intron | 20.0% |
| !! | TAATTTATGTTGGGATATTA+GGG | + | tig0027833:16017-16036 | Msa1436000:intron | 20.0% |
| !!! | ATTTGTTCTGTAGTTTATTT+TGG | + | tig0027833:16139-16158 | Msa1436000:intron | 20.0% |
| !!! | TTTGTTCTGTAGTTTATTTT+GGG | + | tig0027833:16140-16159 | Msa1436000:intron | 20.0% |
| !!! | TAGTTTATTTTGGGATATTA+GGG | + | tig0027833:16149-16168 | Msa1436000:intron | 20.0% |
| !! | ACAATCAAATAAAATAAGTG+TGG | - | tig0027833:16502-16521 | None:intergenic | 20.0% |
| !! | TTCTGTTCTATAATTTATCT+TGG | + | tig0027833:16521-16540 | Msa1436000:intron | 20.0% |
| !! | TCTGTTCTATAATTTATCTT+GGG | + | tig0027833:16522-16541 | Msa1436000:intron | 20.0% |
| !! | TGAAAGTTAAAAAAAAGGAA+AGG | - | tig0027833:16929-16948 | None:intergenic | 20.0% |
| !! | ATGGTTGAAAGTTAAAAAAA+AGG | - | tig0027833:16934-16953 | None:intergenic | 20.0% |
| !! | AAAATAATTGTATCTTCACA+TGG | - | tig0027833:17434-17453 | None:intergenic | 20.0% |
| !! | CAAAATAATAGAGAATGAAA+TGG | - | tig0027833:17552-17571 | None:intergenic | 20.0% |
| !!! | TTTCATTCTCTATTATTTTG+TGG | + | tig0027833:17552-17571 | Msa1436000:intron | 20.0% |
| !! | TTGATCAAATAAGAAATGAA+GGG | - | tig0027833:17641-17660 | None:intergenic | 20.0% |
| !! | TTTGATCAAATAAGAAATGA+AGG | - | tig0027833:17642-17661 | None:intergenic | 20.0% |
| !! | TTATAAAACGGCTTATAATT+TGG | + | tig0027833:18150-18169 | Msa1436000:intron | 20.0% |
| !! | TATAAAACGGCTTATAATTT+GGG | + | tig0027833:18151-18170 | Msa1436000:intron | 20.0% |
| !! | CTTAAAAAAAGAAAAAGATG+AGG | - | tig0027833:18262-18281 | None:intergenic | 20.0% |
| !! | AAATCTTAACTATGTTTATG+AGG | + | tig0027833:18418-18437 | Msa1436000:intron | 20.0% |
| !! | TTTTGTAGATTGACAAAATG+GGG | - | tig0027833:15683-15702 | None:intergenic | 25.0% |
| ! | TTGTCAATCTACAAAATTCT+AGG | + | tig0027833:15687-15706 | Msa1436000:CDS | 25.0% |
| ! | TGTCAATCTACAAAATTCTA+GGG | + | tig0027833:15688-15707 | Msa1436000:CDS | 25.0% |
| !!! | TATTTTGGCTTCTTTTTTAG+AGG | + | tig0027833:15914-15933 | Msa1436000:intron | 25.0% |
| ! | GTAATTTATGTTGGGATATT+AGG | + | tig0027833:16016-16035 | Msa1436000:intron | 25.0% |
| ! | AAAAAAAAGTCCCAATTCAA+AGG | - | tig0027833:16050-16069 | None:intergenic | 25.0% |
| !!! | GTAGTTTATTTTGGGATATT+AGG | + | tig0027833:16148-16167 | Msa1436000:intron | 25.0% |
| ! | AAAAAACAGTCACAATTCTA+AGG | - | tig0027833:16182-16201 | None:intergenic | 25.0% |
| ! | ACAATCAACAAAAATAAGTG+TGG | - | tig0027833:16256-16275 | None:intergenic | 25.0% |
| ! | TTCTGTTCTGTAATTTATCT+TGG | + | tig0027833:16275-16294 | Msa1436000:intron | 25.0% |
| ! | TCTGTTCTGTAATTTATCTT+GGG | + | tig0027833:16276-16295 | Msa1436000:intron | 25.0% |
| ! | TTCTGTTCTGTAATTTATCT+TGG | + | tig0027833:16275-16294 | Msa1436000:intron | 25.0% |
| ! | TCTGTTCTGTAATTTATCTT+GGG | + | tig0027833:16276-16295 | Msa1436000:intron | 25.0% |
| ! | AAAAAACAGTCACAATTTAG+AGG | - | tig0027833:16429-16448 | None:intergenic | 25.0% |
| !!! | CACATTGTTTTAAAGTCAAA+AGG | - | tig0027833:16745-16764 | None:intergenic | 25.0% |
| ! | TTGTTAATATGCACATAAGT+TGG | + | tig0027833:16804-16823 | Msa1436000:intron | 25.0% |
| ! | TTGCTAAGAAACAAAAAGTA+GGG | + | tig0027833:17224-17243 | Msa1436000:CDS | 25.0% |
| !!! | AGTTTTATTGAATGCTGTAA+TGG | + | tig0027833:17314-17333 | Msa1436000:intron | 25.0% |
| ! | TTTGCAGTTAAACAAAAAGT+AGG | + | tig0027833:17352-17371 | Msa1436000:intron | 25.0% |
| ! | TTGCAGTTAAACAAAAAGTA+GGG | + | tig0027833:17353-17372 | Msa1436000:intron | 25.0% |
| !! | AACTTGCATTTTCATAAAAC+AGG | - | tig0027833:17463-17482 | None:intergenic | 25.0% |
| !! | AGGTTGCATTTTTATAAAAC+CGG | - | tig0027833:17928-17947 | None:intergenic | 25.0% |
| ! | GAGTTAATATGCATATAAGT+TGG | + | tig0027833:17955-17974 | Msa1436000:intron | 25.0% |
| ! | GCTTCATTGGTATTATAAAA+CGG | + | tig0027833:18138-18157 | Msa1436000:intron | 25.0% |
| !! | TCTCAAAACGACTTATATTT+TGG | + | tig0027833:18185-18204 | Msa1436000:intron | 25.0% |
| !!! | GATGTCTTCTATTTTGTTTT+TGG | + | tig0027833:18228-18247 | Msa1436000:intron | 25.0% |
| ! | AAGGGTGAGATAATTTAATA+TGG | - | tig0027833:18291-18310 | None:intergenic | 25.0% |
| ! | TCAAAAAATAAGAAGCGAAA+GGG | - | tig0027833:18309-18328 | None:intergenic | 25.0% |
| ! | TTCAAAAAATAAGAAGCGAA+AGG | - | tig0027833:18310-18329 | None:intergenic | 25.0% |
| ! | TATTTCAAAAGCAATGCTAA+AGG | - | tig0027833:18444-18463 | None:intergenic | 25.0% |
| ! | ATTCGAATCTTCTCGTATTT+TGG | + | tig0027833:15899-15918 | Msa1436000:intron | 30.0% |
| CTGTTCTGTAATTTATCTTG+GGG | + | tig0027833:16277-16296 | Msa1436000:intron | 30.0% | |
| CAAAAACAGTCGCAATTTAA+AGG | - | tig0027833:16318-16337 | None:intergenic | 30.0% | |
| CTGTTCTGTAATTTATCTTG+GGG | + | tig0027833:16277-16296 | Msa1436000:intron | 30.0% | |
| !!! | TGAAGTTGAGTGTCTTTTTT+GGG | + | tig0027833:16462-16481 | Msa1436000:intron | 30.0% |
| ATAACATAACAGATGTGAAG+AGG | - | tig0027833:16721-16740 | None:intergenic | 30.0% | |
| TTCCCTATTATATCCTATTC+CGG | + | tig0027833:16859-16878 | Msa1436000:intron | 30.0% | |
| AAGGAAAGGCTTAAAAGATA+AGG | - | tig0027833:16915-16934 | None:intergenic | 30.0% | |
| !!! | AGTGTGAGGTTATTTTAACA+TGG | - | tig0027833:16953-16972 | None:intergenic | 30.0% |
| ! | AGATGAAAAATGAAAGTGTG+AGG | - | tig0027833:16967-16986 | None:intergenic | 30.0% |
| TTACTAAGAAGCCAAAATCA+CGG | + | tig0027833:17047-17066 | Msa1436000:CDS | 30.0% | |
| !!! | ACTTCATTCTTGTTTTTTGC+AGG | - | tig0027833:17109-17128 | None:intergenic | 30.0% |
| TGCTAAGAAACAAGAAGTAA+AGG | + | tig0027833:17129-17148 | Msa1436000:CDS | 30.0% | |
| GCTAAGAAACAAGAAGTAAA+GGG | + | tig0027833:17130-17149 | Msa1436000:CDS | 30.0% | |
| GTTGCTAAGAAACAAAAAGT+AGG | + | tig0027833:17223-17242 | Msa1436000:CDS | 30.0% | |
| TGCTAAGAAACAAAAAGTAG+GGG | + | tig0027833:17225-17244 | Msa1436000:CDS | 30.0% | |
| TGCAGTTAAACAAAAAGTAG+GGG | + | tig0027833:17354-17373 | Msa1436000:intron | 30.0% | |
| !!! | GAAGGGTGGTTATTTTAATA+TGG | - | tig0027833:17624-17643 | None:intergenic | 30.0% |
| ATCAAATAAGAAATGAAGGG+TGG | - | tig0027833:17638-17657 | None:intergenic | 30.0% | |
| TTGATGTTGAAGAAGCAAAA+AGG | + | tig0027833:17759-17778 | Msa1436000:CDS | 30.0% | |
| TCTAAATCATAACAGATGGA+TGG | - | tig0027833:17864-17883 | None:intergenic | 30.0% | |
| TCAGTCTAAATCATAACAGA+TGG | - | tig0027833:17868-17887 | None:intergenic | 30.0% | |
| ! | GAAAGAATTTTGTCTTCACA+TGG | - | tig0027833:17899-17918 | None:intergenic | 30.0% |
| ACAAAATTCTTTCTGCATTC+CGG | + | tig0027833:17906-17925 | Msa1436000:intron | 30.0% | |
| TGCATATTAACTCAATCAAG+AGG | - | tig0027833:17948-17967 | None:intergenic | 30.0% | |
| !! | GTTTATCTTGTTATTGTTGC+TGG | + | tig0027833:17982-18001 | Msa1436000:intron | 30.0% |
| AAACGACTTATCATTTGGAA+TGG | - | tig0027833:18041-18060 | None:intergenic | 30.0% | |
| CATCAAAACGACTTATCATT+TGG | - | tig0027833:18046-18065 | None:intergenic | 30.0% | |
| !! | CAAATGATAAGTCGTTTTGA+TGG | + | tig0027833:18044-18063 | Msa1436000:intron | 30.0% |
| ! | TACCAATGAAGCATTAATGA+AGG | - | tig0027833:18130-18149 | None:intergenic | 30.0% |
| !!! | CGACTTATATTTTGGTATTG+AGG | + | tig0027833:18193-18212 | Msa1436000:intron | 30.0% |
| ! | TAACAGAAAAGTATGCCAAA+TGG | + | tig0027833:18336-18355 | Msa1436000:intron | 30.0% |
| ! | TGGTTTGGAAATTGGTATTA+TGG | - | tig0027833:18505-18524 | None:intergenic | 30.0% |
| !! | TCTACAAAATTCTAGGGTTG+CGG | + | tig0027833:15694-15713 | Msa1436000:CDS | 35.0% |
| GGAATCAATGTAAAAACCAG+CGG | - | tig0027833:15795-15814 | None:intergenic | 35.0% | |
| AGGGTTTCAAACCTTTGAAT+TGG | + | tig0027833:16036-16055 | Msa1436000:intron | 35.0% | |
| GGGTTTCAAACCTTTGAATT+GGG | + | tig0027833:16037-16056 | Msa1436000:intron | 35.0% | |
| !!! | GTGAAGTTGAGTGTCTTTTT+TGG | + | tig0027833:16081-16100 | Msa1436000:intron | 35.0% |
| TGAATCTCACAAAGCACAAA+TGG | + | tig0027833:16682-16701 | Msa1436000:intron | 35.0% | |
| GAATCTCACAAAGCACAAAT+GGG | + | tig0027833:16683-16702 | Msa1436000:intron | 35.0% | |
| ! | AGTTTGCATTTTCGTACAAC+AGG | - | tig0027833:16775-16794 | None:intergenic | 35.0% |
| GACCGGAATAGGATATAATA+GGG | - | tig0027833:16864-16883 | None:intergenic | 35.0% | |
| AGACCGGAATAGGATATAAT+AGG | - | tig0027833:16865-16884 | None:intergenic | 35.0% | |
| CAACAAACAGAATAGAAGAC+CGG | - | tig0027833:16881-16900 | None:intergenic | 35.0% | |
| GCTAAGAAACAAAAAGTAGG+GGG | + | tig0027833:17226-17245 | Msa1436000:CDS | 35.0% | |
| GCAGTTAAACAAAAAGTAGG+GGG | + | tig0027833:17355-17374 | Msa1436000:intron | 35.0% | |
| TTTATCTTGCCATTGTTGCT+AGG | + | tig0027833:17511-17530 | Msa1436000:intron | 35.0% | |
| AATGGAGGGAGCAATTAAAT+GGG | - | tig0027833:18023-18042 | None:intergenic | 35.0% | |
| ! | GACTTATCATTTGGAATGGA+GGG | - | tig0027833:18037-18056 | None:intergenic | 35.0% |
| GTCCTTCATTAATGCTTCAT+TGG | + | tig0027833:18125-18144 | Msa1436000:intron | 35.0% | |
| ATGAGGAATAGGTATCCATT+TGG | - | tig0027833:18354-18373 | None:intergenic | 35.0% | |
| TTGCTACAAGATGCATCTTA+AGG | + | tig0027833:18382-18401 | Msa1436000:CDS | 35.0% | |
| !! | GAAACTGTTGGTTTGGAAAT+TGG | - | tig0027833:18513-18532 | None:intergenic | 35.0% |
| AAATGGGGTTGTCCCAATTT+GGG | - | tig0027833:15668-15687 | None:intergenic | 40.0% | |
| AAAATGGGGTTGTCCCAATT+TGG | - | tig0027833:15669-15688 | None:intergenic | 40.0% | |
| ACAGAATAGAAGACCGGAAT+AGG | - | tig0027833:16875-16894 | None:intergenic | 40.0% | |
| CCAAAATCACGGTTCACAAA+GGG | + | tig0027833:17058-17077 | Msa1436000:CDS | 40.0% | |
| !! | TTTTGCTGCTTAGCAAGAAG+CGG | - | tig0027833:17283-17302 | None:intergenic | 40.0% |
| CTTCTTGCTAAGCAGCAAAA+AGG | + | tig0027833:17283-17302 | Msa1436000:CDS | 40.0% | |
| !! | CACATGGTATTGATGTCAAC+AGG | - | tig0027833:17418-17437 | None:intergenic | 40.0% |
| ! | GCAAAAAGTAAGAAGCGTAG+AGG | + | tig0027833:17725-17744 | Msa1436000:CDS | 40.0% |
| ! | CAGCATCGAGTAAACTTACT+TGG | - | tig0027833:17786-17805 | None:intergenic | 40.0% |
| GAATGGAGGGAGCAATTAAA+TGG | - | tig0027833:18024-18043 | None:intergenic | 40.0% | |
| ! | CGACTTATCATTTGGAATGG+AGG | - | tig0027833:18038-18057 | None:intergenic | 40.0% |
| CAATCACACGTATGAGGAAT+AGG | - | tig0027833:18365-18384 | None:intergenic | 40.0% | |
| TTGTAGCAATCACACGTATG+AGG | - | tig0027833:18371-18390 | None:intergenic | 40.0% | |
| CATCTTAAGGCAAGTTCTTC+TGG | + | tig0027833:18395-18414 | Msa1436000:CDS | 40.0% | |
| ! | TTCTCGAGAAACTGTTGGTT+TGG | - | tig0027833:18520-18539 | None:intergenic | 40.0% |
| AAGCATTCTCGAGAAACTGT+TGG | - | tig0027833:18525-18544 | None:intergenic | 40.0% | |
| GTTTCTCGAGAATGCTTCAA+AGG | + | tig0027833:18528-18547 | Msa1436000:intron | 40.0% | |
| TTCAAAGGAGAAGGAAGAGT+TGG | + | tig0027833:18543-18562 | Msa1436000:CDS | 40.0% | |
| !! | GGCTGATATTGATAGTGATG+TGG | + | tig0027833:18567-18586 | Msa1436000:CDS | 40.0% |
| AGAAACGCGTTGAGAGAGAA+AGG | - | tig0027833:15731-15750 | None:intergenic | 45.0% | |
| TTTCTCTCTCAACGCGTTTC+TGG | + | tig0027833:15730-15749 | Msa1436000:CDS | 45.0% | |
| TTGCGAAGAAAGATGTCGAG+CGG | - | tig0027833:15866-15885 | None:intergenic | 45.0% | |
| GCCAAAATCACGGTTCACAA+AGG | + | tig0027833:17057-17076 | Msa1436000:CDS | 45.0% | |
| ! | CCCTTTGTGAACCGTGATTT+TGG | - | tig0027833:17061-17080 | None:intergenic | 45.0% |
| CAAAGGGAAACATTCGTGTG+TGG | + | tig0027833:17074-17093 | Msa1436000:CDS | 45.0% | |
| GCAAGACACAGTGTCAAAGA+AGG | - | tig0027833:17169-17188 | None:intergenic | 45.0% | |
| TTGCCATTGTTGCTAGGCTT+GGG | + | tig0027833:17517-17536 | Msa1436000:intron | 45.0% | |
| TTTCCCAAGCCTAGCAACAA+TGG | - | tig0027833:17523-17542 | None:intergenic | 45.0% | |
| CGAGAATGCTTCAAAGGAGA+AGG | + | tig0027833:18534-18553 | Msa1436000:CDS | 45.0% | |
| AAAGGAGAAGGAAGAGTTGG+AGG | + | tig0027833:18546-18565 | Msa1436000:CDS | 45.0% | |
| ! | TTCTTCGGTTTTCTTGCCGC+TGG | + | tig0027833:15776-15795 | Msa1436000:intron | 50.0% |
| ! | TCAGGCGTTTTTCTCCGTCT+AGG | + | tig0027833:15839-15858 | Msa1436000:intron | 50.0% |
| TGCGAAGAAAGATGTCGAGC+GGG | - | tig0027833:15865-15884 | None:intergenic | 50.0% | |
| GCTCGACATCTTTCTTCGCA+AGG | + | tig0027833:15865-15884 | Msa1436000:CDS | 50.0% | |
| CTGCTTAGCAAGAAGCGGTT+TGG | - | tig0027833:17278-17297 | None:intergenic | 50.0% | |
| CTTGCCATTGTTGCTAGGCT+TGG | + | tig0027833:17516-17535 | Msa1436000:intron | 50.0% | |
| AGATGTCGAGCGGGCCTAGA+CGG | - | tig0027833:15856-15875 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027833 | gene | 15663 | 18594 | 15663 | ID=Msa1436000;Name=Msa1436000 |
| tig0027833 | mRNA | 15663 | 18594 | 15663 | ID=Msa1436000-mRNA-1;Parent=Msa1436000;Name=Msa1436000-mRNA-1;_AED=0.23;_eAED=0.33;_QI=0|0.6|0.16|1|0.6|0.66|6|0|235 |
| tig0027833 | exon | 15663 | 15751 | 15663 | ID=Msa1436000-mRNA-1:exon:10021;Parent=Msa1436000-mRNA-1 |
| tig0027833 | exon | 15843 | 15886 | 15843 | ID=Msa1436000-mRNA-1:exon:10022;Parent=Msa1436000-mRNA-1 |
| tig0027833 | exon | 17005 | 17310 | 17005 | ID=Msa1436000-mRNA-1:exon:10023;Parent=Msa1436000-mRNA-1 |
| tig0027833 | exon | 17673 | 17786 | 17673 | ID=Msa1436000-mRNA-1:exon:10024;Parent=Msa1436000-mRNA-1 |
| tig0027833 | exon | 18342 | 18430 | 18342 | ID=Msa1436000-mRNA-1:exon:10025;Parent=Msa1436000-mRNA-1 |
| tig0027833 | exon | 18529 | 18594 | 18529 | ID=Msa1436000-mRNA-1:exon:10026;Parent=Msa1436000-mRNA-1 |
| tig0027833 | CDS | 15663 | 15751 | 15663 | ID=Msa1436000-mRNA-1:cds;Parent=Msa1436000-mRNA-1 |
| tig0027833 | CDS | 15843 | 15886 | 15843 | ID=Msa1436000-mRNA-1:cds;Parent=Msa1436000-mRNA-1 |
| tig0027833 | CDS | 17005 | 17310 | 17005 | ID=Msa1436000-mRNA-1:cds;Parent=Msa1436000-mRNA-1 |
| tig0027833 | CDS | 17673 | 17786 | 17673 | ID=Msa1436000-mRNA-1:cds;Parent=Msa1436000-mRNA-1 |
| tig0027833 | CDS | 18342 | 18430 | 18342 | ID=Msa1436000-mRNA-1:cds;Parent=Msa1436000-mRNA-1 |
| tig0027833 | CDS | 18529 | 18594 | 18529 | ID=Msa1436000-mRNA-1:cds;Parent=Msa1436000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
