Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331410 | RHN63793.1 | 56.667 | 90 | 18 | 4 | 147 | 235 | 2 | 71 | 1.92e-18 | 88.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331410 | A0A396IGM7 | 56.667 | 90 | 18 | 4 | 147 | 235 | 2 | 71 | 9.15e-19 | 88.2 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1331410 | Msa1436000 | 0.990960 | 3.487866e-185 | -8.615850e-47 |
| Msa1213560 | Msa1331410 | 0.957542 | 2.110726e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1331410 | MtrunA17_Chr4g0062151 | 56.667 | 90 | 18 | 4 | 147 | 235 | 2 | 71 | 1.76e-22 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTCTCAACGCGTTTC+TGG | 0.125137 | 8_4:+50913304 | Msa1331410:CDS |
| CCCTTTGTGAACCGTGATTT+TGG | 0.137323 | 8_4:-50914632 | None:intergenic |
| AAAATGGGGTTGTCCCAATT+TGG | 0.174546 | 8_4:-50913240 | None:intergenic |
| CATCTTAAGGCAAGTTCTTC+TGG | 0.193097 | 8_4:+50915971 | Msa1331410:CDS |
| TTGTCAATCTACAAAATTCT+AGG | 0.197709 | 8_4:+50913261 | Msa1331410:CDS |
| ACAAATCGTGTAGCCCAAAT+TGG | 0.206257 | 8_4:+50913226 | None:intergenic |
| AAATGGGGTTGTCCCAATTT+GGG | 0.361283 | 8_4:-50913239 | None:intergenic |
| TTGATGTTGAAGAAGCAAAA+AGG | 0.364210 | 8_4:+50915335 | Msa1331410:CDS |
| CTTCTTGCTAAGCAGCAAAA+AGG | 0.384348 | 8_4:+50914857 | Msa1331410:CDS |
| CAATCACACGTATGAGGAAT+AGG | 0.388822 | 8_4:-50915938 | None:intergenic |
| CTGCTTAGCAAGAAGCGGTT+TGG | 0.389010 | 8_4:-50914849 | None:intergenic |
| TGCTAAGAAACAAGAAGTAA+AGG | 0.469325 | 8_4:+50914703 | Msa1331410:CDS |
| GCTAAGAAACAAGAAGTAAA+GGG | 0.470345 | 8_4:+50914704 | Msa1331410:CDS |
| TTGCTACAAGATGCATCTTA+AGG | 0.483577 | 8_4:+50915958 | Msa1331410:CDS |
| TGTCAATCTACAAAATTCTA+GGG | 0.486128 | 8_4:+50913262 | Msa1331410:CDS |
| ATGAGGAATAGGTATCCATT+TGG | 0.489970 | 8_4:-50915927 | None:intergenic |
| CAAATCGTGTAGCCCAAATT+GGG | 0.499013 | 8_4:+50913227 | None:intergenic |
| AAAGGAGAAGGAAGAGTTGG+AGG | 0.503994 | 8_4:+50916122 | Msa1331410:CDS |
| AGATGTCGAGCGGGCCTAGA+CGG | 0.510961 | 8_4:-50913426 | None:intergenic |
| TAACAGAAAAGTATGCCAAA+TGG | 0.512901 | 8_4:+50915912 | Msa1331410:intron |
| TCTACAAAATTCTAGGGTTG+CGG | 0.519052 | 8_4:+50913268 | Msa1331410:CDS |
| TTGTAGCAATCACACGTATG+AGG | 0.521163 | 8_4:-50915944 | None:intergenic |
| GCTCGACATCTTTCTTCGCA+AGG | 0.521379 | 8_4:+50913438 | Msa1331410:CDS |
| CGAGAATGCTTCAAAGGAGA+AGG | 0.534249 | 8_4:+50916110 | Msa1331410:CDS |
| TTCAAAGGAGAAGGAAGAGT+TGG | 0.536101 | 8_4:+50916119 | Msa1331410:CDS |
| CCAAAATCACGGTTCACAAA+GGG | 0.540981 | 8_4:+50914632 | Msa1331410:CDS |
| AGAAACGCGTTGAGAGAGAA+AGG | 0.555662 | 8_4:-50913302 | None:intergenic |
| GTTTCTCGAGAATGCTTCAA+AGG | 0.559657 | 8_4:+50916104 | Msa1331410:intron |
| GCCAAAATCACGGTTCACAA+AGG | 0.562559 | 8_4:+50914631 | Msa1331410:CDS |
| GCAAGACACAGTGTCAAAGA+AGG | 0.570099 | 8_4:-50914740 | None:intergenic |
| TGCGAAGAAAGATGTCGAGC+GGG | 0.578508 | 8_4:-50913435 | None:intergenic |
| TTACTAAGAAGCCAAAATCA+CGG | 0.661021 | 8_4:+50914621 | Msa1331410:CDS |
| CAAAGGGAAACATTCGTGTG+TGG | 0.661671 | 8_4:+50914648 | Msa1331410:CDS |
| GGCTGATATTGATAGTGATG+TGG | 0.669563 | 8_4:+50916143 | Msa1331410:CDS |
| TTGCGAAGAAAGATGTCGAG+CGG | 0.685698 | 8_4:-50913436 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATAATAAA+AGG | - | chr8_4:50914137-50914156 | None:intergenic | 0.0% |
| !!! | TATTATTATTATTATTATTT+TGG | + | chr8_4:50914190-50914209 | Msa1331410:intron | 0.0% |
| !! | AAAATAATAGAGAATGAAAT+GGG | - | chr8_4:50915125-50915144 | None:intergenic | 15.0% |
| !!! | ATTTTGTAGATTGACAAAAT+GGG | - | chr8_4:50913258-50913277 | None:intergenic | 20.0% |
| !!! | AATTTTGTAGATTGACAAAA+TGG | - | chr8_4:50913259-50913278 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCATTTCTTCTT+CGG | + | chr8_4:50913334-50913353 | Msa1331410:intron | 20.0% |
| !! | TGAAAAAAAAAATGCGAATA+AGG | - | chr8_4:50913389-50913408 | None:intergenic | 20.0% |
| !!! | GCATTTTTTTTTTCATTTTC+AGG | + | chr8_4:50913394-50913413 | Msa1331410:intron | 20.0% |
| !! | ACTATCAATATAAATAAGTG+TGG | - | chr8_4:50913557-50913576 | None:intergenic | 20.0% |
| !! | ATTTGTTCTGTAATTTATGT+TGG | + | chr8_4:50913580-50913599 | Msa1331410:intron | 20.0% |
| !! | TTTGTTCTGTAATTTATGTT+GGG | + | chr8_4:50913581-50913600 | Msa1331410:intron | 20.0% |
| !! | TAATTTATGTTGGGATATTA+GGG | + | chr8_4:50913590-50913609 | Msa1331410:intron | 20.0% |
| !!! | ATTTGTTCTGTAGTTTATTT+TGG | + | chr8_4:50913712-50913731 | Msa1331410:intron | 20.0% |
| !!! | TTTGTTCTGTAGTTTATTTT+GGG | + | chr8_4:50913713-50913732 | Msa1331410:intron | 20.0% |
| !!! | TAGTTTATTTTGGGATATTA+GGG | + | chr8_4:50913722-50913741 | Msa1331410:intron | 20.0% |
| !! | ACAATCAAATAAAATAAGTG+TGG | - | chr8_4:50914075-50914094 | None:intergenic | 20.0% |
| !! | TTCTGTTCTATAATTTATCT+TGG | + | chr8_4:50914094-50914113 | Msa1331410:intron | 20.0% |
| !! | TCTGTTCTATAATTTATCTT+GGG | + | chr8_4:50914095-50914114 | Msa1331410:intron | 20.0% |
| !! | TGAAAGTTAAAAAAAAGGAA+AGG | - | chr8_4:50914503-50914522 | None:intergenic | 20.0% |
| !! | ATGGTTGAAAGTTAAAAAAA+AGG | - | chr8_4:50914508-50914527 | None:intergenic | 20.0% |
| !! | AAAATAATTGTATCTTCACA+TGG | - | chr8_4:50915008-50915027 | None:intergenic | 20.0% |
| !! | CAAAATAATAGAGAATGAAA+TGG | - | chr8_4:50915126-50915145 | None:intergenic | 20.0% |
| !!! | TTTCATTCTCTATTATTTTG+TGG | + | chr8_4:50915126-50915145 | Msa1331410:intron | 20.0% |
| !! | TTGATCAAATAAGAAATGAA+GGG | - | chr8_4:50915217-50915236 | None:intergenic | 20.0% |
| !! | TTTGATCAAATAAGAAATGA+AGG | - | chr8_4:50915218-50915237 | None:intergenic | 20.0% |
| !! | TTATAAAACGGCTTATAATT+TGG | + | chr8_4:50915726-50915745 | Msa1331410:intron | 20.0% |
| !! | TATAAAACGGCTTATAATTT+GGG | + | chr8_4:50915727-50915746 | Msa1331410:intron | 20.0% |
| !! | CTTAAAAAAAGAAAAAGATG+AGG | - | chr8_4:50915838-50915857 | None:intergenic | 20.0% |
| !! | AAATCTTAACTATGTTTATG+AGG | + | chr8_4:50915994-50916013 | Msa1331410:intron | 20.0% |
| !! | TTTTGTAGATTGACAAAATG+GGG | - | chr8_4:50913257-50913276 | None:intergenic | 25.0% |
| ! | TTGTCAATCTACAAAATTCT+AGG | + | chr8_4:50913261-50913280 | Msa1331410:CDS | 25.0% |
| ! | TGTCAATCTACAAAATTCTA+GGG | + | chr8_4:50913262-50913281 | Msa1331410:CDS | 25.0% |
| !!! | TATTTTGGCTTCTTTTTTAG+AGG | + | chr8_4:50913487-50913506 | Msa1331410:intron | 25.0% |
| ! | GTAATTTATGTTGGGATATT+AGG | + | chr8_4:50913589-50913608 | Msa1331410:intron | 25.0% |
| ! | AAAAAAAAGTCCCAATTCAA+AGG | - | chr8_4:50913623-50913642 | None:intergenic | 25.0% |
| !!! | GTAGTTTATTTTGGGATATT+AGG | + | chr8_4:50913721-50913740 | Msa1331410:intron | 25.0% |
| ! | AAAAAACAGTCACAATTCTA+AGG | - | chr8_4:50913755-50913774 | None:intergenic | 25.0% |
| ! | ACAATCAACAAAAATAAGTG+TGG | - | chr8_4:50913829-50913848 | None:intergenic | 25.0% |
| ! | TTCTGTTCTGTAATTTATCT+TGG | + | chr8_4:50913848-50913867 | Msa1331410:intron | 25.0% |
| ! | TCTGTTCTGTAATTTATCTT+GGG | + | chr8_4:50913849-50913868 | Msa1331410:intron | 25.0% |
| ! | TTCTGTTCTGTAATTTATCT+TGG | + | chr8_4:50913848-50913867 | Msa1331410:intron | 25.0% |
| ! | TCTGTTCTGTAATTTATCTT+GGG | + | chr8_4:50913849-50913868 | Msa1331410:intron | 25.0% |
| ! | AAAAAACAGTCACAATTTAG+AGG | - | chr8_4:50914002-50914021 | None:intergenic | 25.0% |
| !!! | CACATTGTTTTAAAGTCAAA+AGG | - | chr8_4:50914319-50914338 | None:intergenic | 25.0% |
| ! | TTGTTAATATGCACATAAGT+TGG | + | chr8_4:50914378-50914397 | Msa1331410:intron | 25.0% |
| ! | TTGCTAAGAAACAAAAAGTA+GGG | + | chr8_4:50914798-50914817 | Msa1331410:CDS | 25.0% |
| !!! | AGTTTTATTGAATGCTGTAA+TGG | + | chr8_4:50914888-50914907 | Msa1331410:intron | 25.0% |
| ! | TTTGCAGTTAAACAAAAAGT+AGG | + | chr8_4:50914926-50914945 | Msa1331410:intron | 25.0% |
| ! | TTGCAGTTAAACAAAAAGTA+GGG | + | chr8_4:50914927-50914946 | Msa1331410:intron | 25.0% |
| !! | AACTTGCATTTTCATAAAAC+AGG | - | chr8_4:50915037-50915056 | None:intergenic | 25.0% |
| !! | AGGTTGCATTTTTATAAAAC+CGG | - | chr8_4:50915504-50915523 | None:intergenic | 25.0% |
| ! | GAGTTAATATGCATATAAGT+TGG | + | chr8_4:50915531-50915550 | Msa1331410:intron | 25.0% |
| ! | GCTTCATTGGTATTATAAAA+CGG | + | chr8_4:50915714-50915733 | Msa1331410:intron | 25.0% |
| !! | TCTCAAAACGACTTATATTT+TGG | + | chr8_4:50915761-50915780 | Msa1331410:intron | 25.0% |
| !!! | GATGTCTTCTATTTTGTTTT+TGG | + | chr8_4:50915804-50915823 | Msa1331410:intron | 25.0% |
| ! | AAGGGTGAGATAATTTAATA+TGG | - | chr8_4:50915867-50915886 | None:intergenic | 25.0% |
| ! | TCAAAAAATAAGAAGCGAAA+GGG | - | chr8_4:50915885-50915904 | None:intergenic | 25.0% |
| ! | TTCAAAAAATAAGAAGCGAA+AGG | - | chr8_4:50915886-50915905 | None:intergenic | 25.0% |
| ! | TATTTCAAAAGCAATGCTAA+AGG | - | chr8_4:50916020-50916039 | None:intergenic | 25.0% |
| ! | ATTCGAATCTTCTCGTATTT+TGG | + | chr8_4:50913472-50913491 | Msa1331410:intron | 30.0% |
| CTGTTCTGTAATTTATCTTG+GGG | + | chr8_4:50913850-50913869 | Msa1331410:intron | 30.0% | |
| CAAAAACAGTCGCAATTTAA+AGG | - | chr8_4:50913891-50913910 | None:intergenic | 30.0% | |
| CTGTTCTGTAATTTATCTTG+GGG | + | chr8_4:50913850-50913869 | Msa1331410:intron | 30.0% | |
| !!! | TGAAGTTGAGTGTCTTTTTT+GGG | + | chr8_4:50914035-50914054 | Msa1331410:intron | 30.0% |
| ATAACATAACAGATGTGAAG+AGG | - | chr8_4:50914295-50914314 | None:intergenic | 30.0% | |
| TTCCCTATTATATCCTATTC+CGG | + | chr8_4:50914433-50914452 | Msa1331410:intron | 30.0% | |
| AAGGAAAGGCTTAAAAGATA+AGG | - | chr8_4:50914489-50914508 | None:intergenic | 30.0% | |
| !!! | AGTGTGAGGTTATTTTAACA+TGG | - | chr8_4:50914527-50914546 | None:intergenic | 30.0% |
| ! | AGATGAAAAATGAAAGTGTG+AGG | - | chr8_4:50914541-50914560 | None:intergenic | 30.0% |
| TTACTAAGAAGCCAAAATCA+CGG | + | chr8_4:50914621-50914640 | Msa1331410:CDS | 30.0% | |
| !!! | ACTTCATTCTTGTTTTTTGC+AGG | - | chr8_4:50914683-50914702 | None:intergenic | 30.0% |
| TGCTAAGAAACAAGAAGTAA+AGG | + | chr8_4:50914703-50914722 | Msa1331410:CDS | 30.0% | |
| GCTAAGAAACAAGAAGTAAA+GGG | + | chr8_4:50914704-50914723 | Msa1331410:CDS | 30.0% | |
| GTTGCTAAGAAACAAAAAGT+AGG | + | chr8_4:50914797-50914816 | Msa1331410:CDS | 30.0% | |
| TGCTAAGAAACAAAAAGTAG+GGG | + | chr8_4:50914799-50914818 | Msa1331410:CDS | 30.0% | |
| TGCAGTTAAACAAAAAGTAG+GGG | + | chr8_4:50914928-50914947 | Msa1331410:intron | 30.0% | |
| !!! | GAAGGGTGGTTATTTTAATA+TGG | - | chr8_4:50915200-50915219 | None:intergenic | 30.0% |
| ATCAAATAAGAAATGAAGGG+TGG | - | chr8_4:50915214-50915233 | None:intergenic | 30.0% | |
| TTGATGTTGAAGAAGCAAAA+AGG | + | chr8_4:50915335-50915354 | Msa1331410:CDS | 30.0% | |
| TCTAAATCATAACAGATGGA+TGG | - | chr8_4:50915440-50915459 | None:intergenic | 30.0% | |
| TCAGTCTAAATCATAACAGA+TGG | - | chr8_4:50915444-50915463 | None:intergenic | 30.0% | |
| ! | GAAAGAATTTTGTCTTCACA+TGG | - | chr8_4:50915475-50915494 | None:intergenic | 30.0% |
| ACAAAATTCTTTCTGCATTC+CGG | + | chr8_4:50915482-50915501 | Msa1331410:intron | 30.0% | |
| TGCATATTAACTCAATCAAG+AGG | - | chr8_4:50915524-50915543 | None:intergenic | 30.0% | |
| !! | GTTTATCTTGTTATTGTTGC+TGG | + | chr8_4:50915558-50915577 | Msa1331410:intron | 30.0% |
| AAACGACTTATCATTTGGAA+TGG | - | chr8_4:50915617-50915636 | None:intergenic | 30.0% | |
| CATCAAAACGACTTATCATT+TGG | - | chr8_4:50915622-50915641 | None:intergenic | 30.0% | |
| !! | CAAATGATAAGTCGTTTTGA+TGG | + | chr8_4:50915620-50915639 | Msa1331410:intron | 30.0% |
| ! | TACCAATGAAGCATTAATGA+AGG | - | chr8_4:50915706-50915725 | None:intergenic | 30.0% |
| !!! | CGACTTATATTTTGGTATTG+AGG | + | chr8_4:50915769-50915788 | Msa1331410:intron | 30.0% |
| ! | TAACAGAAAAGTATGCCAAA+TGG | + | chr8_4:50915912-50915931 | Msa1331410:intron | 30.0% |
| ! | TGGTTTGGAAATTGGTATTA+TGG | - | chr8_4:50916081-50916100 | None:intergenic | 30.0% |
| !! | TCTACAAAATTCTAGGGTTG+CGG | + | chr8_4:50913268-50913287 | Msa1331410:CDS | 35.0% |
| GGAATCAATGTAAAAACCAG+CGG | - | chr8_4:50913368-50913387 | None:intergenic | 35.0% | |
| AGGGTTTCAAACCTTTGAAT+TGG | + | chr8_4:50913609-50913628 | Msa1331410:intron | 35.0% | |
| GGGTTTCAAACCTTTGAATT+GGG | + | chr8_4:50913610-50913629 | Msa1331410:intron | 35.0% | |
| !!! | GTGAAGTTGAGTGTCTTTTT+TGG | + | chr8_4:50913654-50913673 | Msa1331410:intron | 35.0% |
| TGAATCTCACAAAGCACAAA+TGG | + | chr8_4:50914256-50914275 | Msa1331410:intron | 35.0% | |
| GAATCTCACAAAGCACAAAT+GGG | + | chr8_4:50914257-50914276 | Msa1331410:intron | 35.0% | |
| ! | AGTTTGCATTTTCGTACAAC+AGG | - | chr8_4:50914349-50914368 | None:intergenic | 35.0% |
| GACCGGAATAGGATATAATA+GGG | - | chr8_4:50914438-50914457 | None:intergenic | 35.0% | |
| AGACCGGAATAGGATATAAT+AGG | - | chr8_4:50914439-50914458 | None:intergenic | 35.0% | |
| CAACAAACAGAATAGAAGAC+CGG | - | chr8_4:50914455-50914474 | None:intergenic | 35.0% | |
| GCTAAGAAACAAAAAGTAGG+GGG | + | chr8_4:50914800-50914819 | Msa1331410:CDS | 35.0% | |
| GCAGTTAAACAAAAAGTAGG+GGG | + | chr8_4:50914929-50914948 | Msa1331410:intron | 35.0% | |
| TTTATCTTGCCATTGTTGCT+AGG | + | chr8_4:50915085-50915104 | Msa1331410:intron | 35.0% | |
| AATGGAGGGAGCAATTAAAT+GGG | - | chr8_4:50915599-50915618 | None:intergenic | 35.0% | |
| ! | GACTTATCATTTGGAATGGA+GGG | - | chr8_4:50915613-50915632 | None:intergenic | 35.0% |
| GTCCTTCATTAATGCTTCAT+TGG | + | chr8_4:50915701-50915720 | Msa1331410:intron | 35.0% | |
| ATGAGGAATAGGTATCCATT+TGG | - | chr8_4:50915930-50915949 | None:intergenic | 35.0% | |
| TTGCTACAAGATGCATCTTA+AGG | + | chr8_4:50915958-50915977 | Msa1331410:CDS | 35.0% | |
| !! | GAAACTGTTGGTTTGGAAAT+TGG | - | chr8_4:50916089-50916108 | None:intergenic | 35.0% |
| AAATGGGGTTGTCCCAATTT+GGG | - | chr8_4:50913242-50913261 | None:intergenic | 40.0% | |
| AAAATGGGGTTGTCCCAATT+TGG | - | chr8_4:50913243-50913262 | None:intergenic | 40.0% | |
| ACAGAATAGAAGACCGGAAT+AGG | - | chr8_4:50914449-50914468 | None:intergenic | 40.0% | |
| CCAAAATCACGGTTCACAAA+GGG | + | chr8_4:50914632-50914651 | Msa1331410:CDS | 40.0% | |
| !! | TTTTGCTGCTTAGCAAGAAG+CGG | - | chr8_4:50914857-50914876 | None:intergenic | 40.0% |
| CTTCTTGCTAAGCAGCAAAA+AGG | + | chr8_4:50914857-50914876 | Msa1331410:CDS | 40.0% | |
| !! | CACATGGTATTGATGTCAAC+AGG | - | chr8_4:50914992-50915011 | None:intergenic | 40.0% |
| ! | GCAAAAAGTAAGAAGCGTAG+AGG | + | chr8_4:50915301-50915320 | Msa1331410:CDS | 40.0% |
| ! | CAGCATCGAGTAAACTTACT+TGG | - | chr8_4:50915362-50915381 | None:intergenic | 40.0% |
| GAATGGAGGGAGCAATTAAA+TGG | - | chr8_4:50915600-50915619 | None:intergenic | 40.0% | |
| ! | CGACTTATCATTTGGAATGG+AGG | - | chr8_4:50915614-50915633 | None:intergenic | 40.0% |
| CAATCACACGTATGAGGAAT+AGG | - | chr8_4:50915941-50915960 | None:intergenic | 40.0% | |
| TTGTAGCAATCACACGTATG+AGG | - | chr8_4:50915947-50915966 | None:intergenic | 40.0% | |
| CATCTTAAGGCAAGTTCTTC+TGG | + | chr8_4:50915971-50915990 | Msa1331410:CDS | 40.0% | |
| ! | TTCTCGAGAAACTGTTGGTT+TGG | - | chr8_4:50916096-50916115 | None:intergenic | 40.0% |
| AAGCATTCTCGAGAAACTGT+TGG | - | chr8_4:50916101-50916120 | None:intergenic | 40.0% | |
| GTTTCTCGAGAATGCTTCAA+AGG | + | chr8_4:50916104-50916123 | Msa1331410:intron | 40.0% | |
| TTCAAAGGAGAAGGAAGAGT+TGG | + | chr8_4:50916119-50916138 | Msa1331410:CDS | 40.0% | |
| !! | GGCTGATATTGATAGTGATG+TGG | + | chr8_4:50916143-50916162 | Msa1331410:CDS | 40.0% |
| AGAAACGCGTTGAGAGAGAA+AGG | - | chr8_4:50913305-50913324 | None:intergenic | 45.0% | |
| TTTCTCTCTCAACGCGTTTC+TGG | + | chr8_4:50913304-50913323 | Msa1331410:CDS | 45.0% | |
| TTGCGAAGAAAGATGTCGAG+CGG | - | chr8_4:50913439-50913458 | None:intergenic | 45.0% | |
| GCCAAAATCACGGTTCACAA+AGG | + | chr8_4:50914631-50914650 | Msa1331410:CDS | 45.0% | |
| ! | CCCTTTGTGAACCGTGATTT+TGG | - | chr8_4:50914635-50914654 | None:intergenic | 45.0% |
| CAAAGGGAAACATTCGTGTG+TGG | + | chr8_4:50914648-50914667 | Msa1331410:CDS | 45.0% | |
| GCAAGACACAGTGTCAAAGA+AGG | - | chr8_4:50914743-50914762 | None:intergenic | 45.0% | |
| TTGCCATTGTTGCTAGGCTT+GGG | + | chr8_4:50915091-50915110 | Msa1331410:intron | 45.0% | |
| TTTCCCAAGCCTAGCAACAA+TGG | - | chr8_4:50915097-50915116 | None:intergenic | 45.0% | |
| CGAGAATGCTTCAAAGGAGA+AGG | + | chr8_4:50916110-50916129 | Msa1331410:CDS | 45.0% | |
| AAAGGAGAAGGAAGAGTTGG+AGG | + | chr8_4:50916122-50916141 | Msa1331410:CDS | 45.0% | |
| ! | TTCTTCGGTTTTCTTGCCGC+TGG | + | chr8_4:50913349-50913368 | Msa1331410:intron | 50.0% |
| ! | TCAGGCGTTTTTCTCCGTCT+AGG | + | chr8_4:50913412-50913431 | Msa1331410:intron | 50.0% |
| TGCGAAGAAAGATGTCGAGC+GGG | - | chr8_4:50913438-50913457 | None:intergenic | 50.0% | |
| GCTCGACATCTTTCTTCGCA+AGG | + | chr8_4:50913438-50913457 | Msa1331410:CDS | 50.0% | |
| CTGCTTAGCAAGAAGCGGTT+TGG | - | chr8_4:50914852-50914871 | None:intergenic | 50.0% | |
| CTTGCCATTGTTGCTAGGCT+TGG | + | chr8_4:50915090-50915109 | Msa1331410:intron | 50.0% | |
| AGATGTCGAGCGGGCCTAGA+CGG | - | chr8_4:50913429-50913448 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 50913237 | 50916170 | 50913237 | ID=Msa1331410;Name=Msa1331410 |
| chr8_4 | mRNA | 50913237 | 50916170 | 50913237 | ID=Msa1331410-mRNA-1;Parent=Msa1331410;Name=Msa1331410-mRNA-1;_AED=0.23;_eAED=0.33;_QI=0|0.6|0.16|1|0.6|0.66|6|0|235 |
| chr8_4 | exon | 50913237 | 50913325 | 50913237 | ID=Msa1331410-mRNA-1:exon:14958;Parent=Msa1331410-mRNA-1 |
| chr8_4 | exon | 50913416 | 50913459 | 50913416 | ID=Msa1331410-mRNA-1:exon:14959;Parent=Msa1331410-mRNA-1 |
| chr8_4 | exon | 50914579 | 50914884 | 50914579 | ID=Msa1331410-mRNA-1:exon:14960;Parent=Msa1331410-mRNA-1 |
| chr8_4 | exon | 50915249 | 50915362 | 50915249 | ID=Msa1331410-mRNA-1:exon:14961;Parent=Msa1331410-mRNA-1 |
| chr8_4 | exon | 50915918 | 50916006 | 50915918 | ID=Msa1331410-mRNA-1:exon:14962;Parent=Msa1331410-mRNA-1 |
| chr8_4 | exon | 50916105 | 50916170 | 50916105 | ID=Msa1331410-mRNA-1:exon:14963;Parent=Msa1331410-mRNA-1 |
| chr8_4 | CDS | 50913237 | 50913325 | 50913237 | ID=Msa1331410-mRNA-1:cds;Parent=Msa1331410-mRNA-1 |
| chr8_4 | CDS | 50913416 | 50913459 | 50913416 | ID=Msa1331410-mRNA-1:cds;Parent=Msa1331410-mRNA-1 |
| chr8_4 | CDS | 50914579 | 50914884 | 50914579 | ID=Msa1331410-mRNA-1:cds;Parent=Msa1331410-mRNA-1 |
| chr8_4 | CDS | 50915249 | 50915362 | 50915249 | ID=Msa1331410-mRNA-1:cds;Parent=Msa1331410-mRNA-1 |
| chr8_4 | CDS | 50915918 | 50916006 | 50915918 | ID=Msa1331410-mRNA-1:cds;Parent=Msa1331410-mRNA-1 |
| chr8_4 | CDS | 50916105 | 50916170 | 50916105 | ID=Msa1331410-mRNA-1:cds;Parent=Msa1331410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
