Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214580 | XP_003609300.1 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 5.10e-88 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214580 | sp|Q9SN73|BSD2_ARATH | 67.816 | 87 | 27 | 1 | 47 | 133 | 51 | 136 | 3.25e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1214560 | Msa1214580 | 0.894916 | 1.571111e-75 | -8.615850e-47 |
| Msa1214580 | Msa1262290 | 0.883456 | 4.418032e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214580 | MtrunA17_Chr4g0063651 | 97.744 | 133 | 3 | 0 | 1 | 133 | 1 | 133 | 4.69e-92 | 262 |
| Msa1214580 | MtrunA17_Chr3g0137861 | 55.446 | 101 | 35 | 2 | 33 | 133 | 50 | 140 | 2.45e-33 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1214580 | AT3G47650.1 | 67.816 | 87 | 27 | 1 | 47 | 133 | 51 | 136 | 3.30e-39 | 129 |
Find 36 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGGAAACTTTCAGTCTT+TGG | 0.264657 | 8_1:+75291466 | Msa1214580:CDS |
| TATTTGTTTCAGAGGTAAAA+AGG | 0.273917 | 8_1:+75293448 | Msa1214580:intron |
| TTCAGACAAACTTCCTTCAT+TGG | 0.329261 | 8_1:-75291437 | None:intergenic |
| CTTTCAGTCTTTGGTAGTTA+AGG | 0.334458 | 8_1:+75291475 | Msa1214580:CDS |
| GAAGATTTCAAGGAACAAAT+AGG | 0.342243 | 8_1:-75291270 | None:intergenic |
| CACTTCAGACCAAGCTATAA+TGG | 0.354403 | 8_1:+75291227 | Msa1214580:exon |
| AGGAGCTGTTATTGGTAATT+CGG | 0.357554 | 8_1:+75291397 | Msa1214580:intron |
| CCTTCATTGGAAAAGCCTTT+CGG | 0.366502 | 8_1:-75291424 | None:intergenic |
| TTTGATGATTAGAAGAAGAT+TGG | 0.375947 | 8_1:+75293527 | Msa1214580:exon |
| GTGAAGGAGTGAAGTGTTAT+CGG | 0.387571 | 8_1:-75291192 | None:intergenic |
| TGTACACAATGCCAAGGTTC+GGG | 0.406664 | 8_1:+75293239 | Msa1214580:CDS |
| AATACAATACATAAATGAAT+AGG | 0.429157 | 8_1:-75293645 | None:intergenic |
| GCGGACTATGCTGGCTATGC+AGG | 0.434740 | 8_1:+75293303 | Msa1214580:CDS |
| AGGTGTGTTTGAAGATTTCA+AGG | 0.444748 | 8_1:-75291280 | None:intergenic |
| ATGTACACAATGCCAAGGTT+CGG | 0.448034 | 8_1:+75293238 | Msa1214580:CDS |
| AATTTGATAGATCACTTCAA+TGG | 0.456646 | 8_1:+75293266 | Msa1214580:CDS |
| TTAAAGCTGGCGGACTATGC+TGG | 0.465239 | 8_1:+75293294 | Msa1214580:CDS |
| TGTGCTGATTGTACTGGAAA+TGG | 0.465789 | 8_1:+75292398 | Msa1214580:CDS |
| ATAGTCCGCCAGCTTTAAAT+CGG | 0.469493 | 8_1:-75293289 | None:intergenic |
| TAGCTGTGAACAATGAGAAA+AGG | 0.477810 | 8_1:+75293576 | Msa1214580:three_prime_UTR |
| CCATGGAACAATTATAAACT+CGG | 0.501325 | 8_1:-75293681 | None:intergenic |
| TTCAATGGCCGATTTAAAGC+TGG | 0.506652 | 8_1:+75293281 | Msa1214580:CDS |
| TGTGGAAGCTGTAATGGAGC+TGG | 0.511885 | 8_1:+75293479 | Msa1214580:CDS |
| ATTGTTTGTGCTGATTGTAC+TGG | 0.511973 | 8_1:+75292392 | Msa1214580:CDS |
| GTTTGTCTGAATTCTAAAGA+TGG | 0.512722 | 8_1:+75291449 | Msa1214580:CDS |
| CCGAGTTTATAATTGTTCCA+TGG | 0.515502 | 8_1:+75293681 | Msa1214580:three_prime_UTR |
| TGGTAATTCGGTTGTCCGAA+AGG | 0.519727 | 8_1:+75291409 | Msa1214580:CDS |
| TCAAATTAACTCCCGAACCT+TGG | 0.522835 | 8_1:-75293250 | None:intergenic |
| AAGATTGCGCCATTATAGCT+TGG | 0.538410 | 8_1:-75291236 | None:intergenic |
| ACTAACAACATAGGAACAAG+TGG | 0.571786 | 8_1:-75293609 | None:intergenic |
| AGTAGAATTACACTCATCCA+TGG | 0.595035 | 8_1:-75293698 | None:intergenic |
| GCTACAGAAGATAGTAGCAA+AGG | 0.599716 | 8_1:+75292350 | Msa1214580:CDS |
| TTGAAATCTTCAAACACACC+TGG | 0.600375 | 8_1:+75291282 | Msa1214580:CDS |
| AGTGAAGTGAAGTGAAGTGA+AGG | 0.625482 | 8_1:-75291208 | None:intergenic |
| AATGGCCGATTTAAAGCTGG+CGG | 0.631372 | 8_1:+75293284 | Msa1214580:CDS |
| ATAGAATGTACACAATGCCA+AGG | 0.643179 | 8_1:+75293233 | Msa1214580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAAAAATTTACTATTTA+AGG | - | chr8_1:75292094-75292113 | None:intergenic | 10.0% |
| !!! | AAGTATCTTATTTGTAAATT+GGG | - | chr8_1:75291519-75291538 | None:intergenic | 15.0% |
| !!! | AAAGTATCTTATTTGTAAAT+TGG | - | chr8_1:75291520-75291539 | None:intergenic | 15.0% |
| !! | TTATAAAAATATCTGCAAAA+GGG | - | chr8_1:75291841-75291860 | None:intergenic | 15.0% |
| !! | ATTATAAAAATATCTGCAAA+AGG | - | chr8_1:75291842-75291861 | None:intergenic | 15.0% |
| !! | TTATTGAAGAAAAATTAAAC+TGG | - | chr8_1:75291990-75292009 | None:intergenic | 15.0% |
| !! | ATCAAAATATCTTAAATGTA+AGG | + | chr8_1:75292030-75292049 | Msa1214580:intron | 15.0% |
| !! | TCAAAATATCTTAAATGTAA+GGG | + | chr8_1:75292031-75292050 | Msa1214580:intron | 15.0% |
| !! | AATAGTAAAAACTAATTACA+GGG | - | chr8_1:75292232-75292251 | None:intergenic | 15.0% |
| !!! | AATTGATTTTGATTTAATAC+AGG | + | chr8_1:75292328-75292347 | Msa1214580:intron | 15.0% |
| !!! | GATTTTTTAAGCATATTTTA+CGG | + | chr8_1:75292739-75292758 | Msa1214580:intron | 15.0% |
| !! | AATACAATACATAAATGAAT+AGG | - | chr8_1:75293648-75293667 | None:intergenic | 15.0% |
| !!! | GAATTTGTTTCACTTTTAAT+AGG | + | chr8_1:75291377-75291396 | Msa1214580:intron | 20.0% |
| !!! | TCATTTTCTCAAATTATCAT+AGG | + | chr8_1:75291678-75291697 | Msa1214580:intron | 20.0% |
| !! | TTTGGATATCTATTGTTTAA+TGG | + | chr8_1:75291771-75291790 | Msa1214580:intron | 20.0% |
| !! | TGAAATGAAAAAGAGAAATT+TGG | + | chr8_1:75291861-75291880 | Msa1214580:intron | 20.0% |
| !! | TCAAATATGAAAGAATGAAA+TGG | - | chr8_1:75291910-75291929 | None:intergenic | 20.0% |
| !!! | ATATTTGAAACAGTGAATTA+TGG | + | chr8_1:75291922-75291941 | Msa1214580:intron | 20.0% |
| !! | TTTCTTCAATAATAGATAGT+AGG | + | chr8_1:75291998-75292017 | Msa1214580:intron | 20.0% |
| !! | AAGGAATAATTTCTAAGTTT+AGG | + | chr8_1:75292166-75292185 | Msa1214580:intron | 20.0% |
| !! | ATAGTAAAAACTAATTACAG+GGG | - | chr8_1:75292231-75292250 | None:intergenic | 20.0% |
| !! | CAATAGTAAAAACTAATTAC+AGG | - | chr8_1:75292233-75292252 | None:intergenic | 20.0% |
| !! | ATGTTCGAATATATTGTTTA+AGG | - | chr8_1:75292583-75292602 | None:intergenic | 20.0% |
| !!! | TTGTTCTTAATTATGACTTT+TGG | - | chr8_1:75293057-75293076 | None:intergenic | 20.0% |
| !! | AAAAGTCATAATTAAGAACA+AGG | + | chr8_1:75293056-75293075 | Msa1214580:intron | 20.0% |
| !!! | TCTACTATATTTTGTTTGAT+TGG | + | chr8_1:75293715-75293734 | Msa1214580:three_prime_UTR | 20.0% |
| ! | ACATAAAAGTTAATAGTACC+AGG | - | chr8_1:75291303-75291322 | None:intergenic | 25.0% |
| ! | TTGAATATAATGACATGTGT+CGG | - | chr8_1:75291653-75291672 | None:intergenic | 25.0% |
| !!! | TGTAATAGTTGGTTTTTTGA+AGG | + | chr8_1:75292147-75292166 | Msa1214580:intron | 25.0% |
| !!! | GAAGAGAAGTATTGAAATAA+CGG | + | chr8_1:75292270-75292289 | Msa1214580:intron | 25.0% |
| !!! | CGATTTCAACTTCTTTTTTA+TGG | + | chr8_1:75292434-75292453 | Msa1214580:intron | 25.0% |
| ! | AGAAAAATCTCCAAACTATT+GGG | - | chr8_1:75292678-75292697 | None:intergenic | 25.0% |
| !! | TGCTTTTGTTACCAATTATT+TGG | + | chr8_1:75292766-75292785 | Msa1214580:intron | 25.0% |
| ! | TGAAGAAAAGTTGAAGAAAA+AGG | - | chr8_1:75292940-75292959 | None:intergenic | 25.0% |
| ! | GAAAAATGAGTATAAAGTGT+TGG | - | chr8_1:75293000-75293019 | None:intergenic | 25.0% |
| ! | AATTTGATAGATCACTTCAA+TGG | + | chr8_1:75293266-75293285 | Msa1214580:CDS | 25.0% |
| ! | AATATACATACATGTTGCAA+AGG | - | chr8_1:75293432-75293451 | None:intergenic | 25.0% |
| ! | TGTATGTATATTTGTTTCAG+AGG | + | chr8_1:75293440-75293459 | Msa1214580:intron | 25.0% |
| ! | TATTTGTTTCAGAGGTAAAA+AGG | + | chr8_1:75293448-75293467 | Msa1214580:intron | 25.0% |
| !! | TTTGATGATTAGAAGAAGAT+TGG | + | chr8_1:75293527-75293546 | Msa1214580:exon | 25.0% |
| ! | ACAAAAAAGACTAACAACAT+AGG | - | chr8_1:75293621-75293640 | None:intergenic | 25.0% |
| GAAGATTTCAAGGAACAAAT+AGG | - | chr8_1:75291273-75291292 | None:intergenic | 30.0% | |
| ! | CTTTTAATAGGAGCTGTTAT+TGG | + | chr8_1:75291389-75291408 | Msa1214580:intron | 30.0% |
| ! | GTTTGTCTGAATTCTAAAGA+TGG | + | chr8_1:75291449-75291468 | Msa1214580:CDS | 30.0% |
| TAGTTGAGTTCTTCTATGAA+AGG | + | chr8_1:75291743-75291762 | Msa1214580:intron | 30.0% | |
| ATCTATTGTTTAATGGTCAG+TGG | + | chr8_1:75291778-75291797 | Msa1214580:intron | 30.0% | |
| GAAAGAATGAAATGGAATCA+AGG | - | chr8_1:75291902-75291921 | None:intergenic | 30.0% | |
| GTGTATTCATTTCATTGCAT+TGG | + | chr8_1:75292120-75292139 | Msa1214580:intron | 30.0% | |
| GCATTGGAAATTGTAATAGT+TGG | + | chr8_1:75292136-75292155 | Msa1214580:intron | 30.0% | |
| ! | TAGTTTTTACTATTGTGTCG+TGG | + | chr8_1:75292238-75292257 | Msa1214580:intron | 30.0% |
| ATTGAAATAACGGTTAGAGT+TGG | + | chr8_1:75292280-75292299 | Msa1214580:intron | 30.0% | |
| AATGGCGCTCATTAATTTAA+AGG | - | chr8_1:75292503-75292522 | None:intergenic | 30.0% | |
| ATGAAACAGACTGCTATAAA+TGG | - | chr8_1:75292521-75292540 | None:intergenic | 30.0% | |
| GAGAAAAATCTCCAAACTAT+TGG | - | chr8_1:75292679-75292698 | None:intergenic | 30.0% | |
| !! | ATTGTTGTTGATGATTCTCT+AGG | + | chr8_1:75292717-75292736 | Msa1214580:intron | 30.0% |
| ! | TGTTACCAATTATTTGGAGT+TGG | + | chr8_1:75292772-75292791 | Msa1214580:intron | 30.0% |
| ! | GTTACCAATTATTTGGAGTT+GGG | + | chr8_1:75292773-75292792 | Msa1214580:intron | 30.0% |
| ! | TTACCAATTATTTGGAGTTG+GGG | + | chr8_1:75292774-75292793 | Msa1214580:intron | 30.0% |
| AAGGATTTGAATCCATAAGA+CGG | - | chr8_1:75292891-75292910 | None:intergenic | 30.0% | |
| ! | CTTCAACTTTTCTTCATGTT+TGG | + | chr8_1:75292944-75292963 | Msa1214580:intron | 30.0% |
| !! | AAATGAGTATAAAGTGTTGG+AGG | - | chr8_1:75292997-75293016 | None:intergenic | 30.0% |
| CTACCTACATATTATGAATC+AGG | + | chr8_1:75293142-75293161 | Msa1214580:intron | 30.0% | |
| GATCCTGATTCATAATATGT+AGG | - | chr8_1:75293148-75293167 | None:intergenic | 30.0% | |
| ! | ATAACTTTTTGCTCAATTCC+AGG | + | chr8_1:75293206-75293225 | Msa1214580:intron | 30.0% |
| ATGCTCATACAAGATAACAA+AGG | - | chr8_1:75293351-75293370 | None:intergenic | 30.0% | |
| ! | GGTAAAAAGGATATTTTGTG+TGG | + | chr8_1:75293461-75293480 | Msa1214580:CDS | 30.0% |
| CCATGGAACAATTATAAACT+CGG | - | chr8_1:75293684-75293703 | None:intergenic | 30.0% | |
| AGGTGTGTTTGAAGATTTCA+AGG | - | chr8_1:75291283-75291302 | None:intergenic | 35.0% | |
| TTGAAATCTTCAAACACACC+TGG | + | chr8_1:75291282-75291301 | Msa1214580:CDS | 35.0% | |
| ! | AGGAGCTGTTATTGGTAATT+CGG | + | chr8_1:75291397-75291416 | Msa1214580:intron | 35.0% |
| TTCAGACAAACTTCCTTCAT+TGG | - | chr8_1:75291440-75291459 | None:intergenic | 35.0% | |
| AGATGGAAACTTTCAGTCTT+TGG | + | chr8_1:75291466-75291485 | Msa1214580:CDS | 35.0% | |
| ! | CTTTCAGTCTTTGGTAGTTA+AGG | + | chr8_1:75291475-75291494 | Msa1214580:CDS | 35.0% |
| TCTCTCATGTAAACAAATGC+TGG | + | chr8_1:75291548-75291567 | Msa1214580:intron | 35.0% | |
| CTTCTATGAAAGGCTATGTT+TGG | + | chr8_1:75291753-75291772 | Msa1214580:intron | 35.0% | |
| AGAATGAAATGGAATCAAGG+AGG | - | chr8_1:75291899-75291918 | None:intergenic | 35.0% | |
| TATTGTGTCGTGGTTAACAA+TGG | + | chr8_1:75292248-75292267 | Msa1214580:intron | 35.0% | |
| !! | ATTGTTTGTGCTGATTGTAC+TGG | + | chr8_1:75292392-75292411 | Msa1214580:CDS | 35.0% |
| CAAACTATTGGGTTATCTCA+CGG | - | chr8_1:75292667-75292686 | None:intergenic | 35.0% | |
| TAAGTACGAGGAAAAAGAGA+AGG | - | chr8_1:75292916-75292935 | None:intergenic | 35.0% | |
| GAAGAAAAAGGATAAGTACG+AGG | - | chr8_1:75292928-75292947 | None:intergenic | 35.0% | |
| ! | ACTTTTCTTCATGTTTGGCT+AGG | + | chr8_1:75292949-75292968 | Msa1214580:intron | 35.0% |
| AATCTTTCATGGAAACGGTT+TGG | - | chr8_1:75293113-75293132 | None:intergenic | 35.0% | |
| ACCGTTTCCATGAAAGATTT+AGG | + | chr8_1:75293114-75293133 | Msa1214580:intron | 35.0% | |
| GCCTAAATCTTTCATGGAAA+CGG | - | chr8_1:75293118-75293137 | None:intergenic | 35.0% | |
| ATCATAAAGATTGCTTCGAC+TGG | + | chr8_1:75293179-75293198 | Msa1214580:intron | 35.0% | |
| TCATAAAGATTGCTTCGACT+GGG | + | chr8_1:75293180-75293199 | Msa1214580:intron | 35.0% | |
| ATAGAATGTACACAATGCCA+AGG | + | chr8_1:75293233-75293252 | Msa1214580:CDS | 35.0% | |
| ! | ATTTTGTGTGGAAGCTGTAA+TGG | + | chr8_1:75293473-75293492 | Msa1214580:CDS | 35.0% |
| !!! | TGTAATGGAGCTGGTTTTAT+TGG | + | chr8_1:75293488-75293507 | Msa1214580:CDS | 35.0% |
| TAGCTGTGAACAATGAGAAA+AGG | + | chr8_1:75293576-75293595 | Msa1214580:three_prime_UTR | 35.0% | |
| ACTAACAACATAGGAACAAG+TGG | - | chr8_1:75293612-75293631 | None:intergenic | 35.0% | |
| CCGAGTTTATAATTGTTCCA+TGG | + | chr8_1:75293681-75293700 | Msa1214580:three_prime_UTR | 35.0% | |
| AGTAGAATTACACTCATCCA+TGG | - | chr8_1:75293701-75293720 | None:intergenic | 35.0% | |
| ! | GTGAAGGAGTGAAGTGTTAT+CGG | - | chr8_1:75291195-75291214 | None:intergenic | 40.0% |
| AGTGAAGTGAAGTGAAGTGA+AGG | - | chr8_1:75291211-75291230 | None:intergenic | 40.0% | |
| CACTTCAGACCAAGCTATAA+TGG | + | chr8_1:75291227-75291246 | Msa1214580:exon | 40.0% | |
| AAGATTGCGCCATTATAGCT+TGG | - | chr8_1:75291239-75291258 | None:intergenic | 40.0% | |
| CCTTCATTGGAAAAGCCTTT+CGG | - | chr8_1:75291427-75291446 | None:intergenic | 40.0% | |
| AACCTTGATTGAAGACGTGT+CGG | + | chr8_1:75291597-75291616 | Msa1214580:intron | 40.0% | |
| !! | ACTAATCTATGAAGCACTGC+AGG | - | chr8_1:75291727-75291746 | None:intergenic | 40.0% |
| ! | AAATGGAATCAAGGAGGCAT+AGG | - | chr8_1:75291893-75291912 | None:intergenic | 40.0% |
| !! | CAAAGGCTCTGGAATATACT+AGG | - | chr8_1:75291950-75291969 | None:intergenic | 40.0% |
| CTAGTATATTCCAGAGCCTT+TGG | + | chr8_1:75291948-75291967 | Msa1214580:intron | 40.0% | |
| ! | CTACTGTACTGATCTACCAA+AGG | - | chr8_1:75291967-75291986 | None:intergenic | 40.0% |
| TCTTACTAAAGAGTTTCCCC+CGG | - | chr8_1:75292208-75292227 | None:intergenic | 40.0% | |
| GCTACAGAAGATAGTAGCAA+AGG | + | chr8_1:75292350-75292369 | Msa1214580:CDS | 40.0% | |
| !! | TGTGCTGATTGTACTGGAAA+TGG | + | chr8_1:75292398-75292417 | Msa1214580:CDS | 40.0% |
| !! | TTCGAACATCATGCTGATTC+CGG | + | chr8_1:75292594-75292613 | Msa1214580:intron | 40.0% |
| CGTGAGATAACCCAATAGTT+TGG | + | chr8_1:75292665-75292684 | Msa1214580:intron | 40.0% | |
| ! | GAGCGGATGTTTATAATGGA+AGG | - | chr8_1:75292845-75292864 | None:intergenic | 40.0% |
| TGGTGAGCGGATGTTTATAA+TGG | - | chr8_1:75292849-75292868 | None:intergenic | 40.0% | |
| ! | GTTGATGCATTGACATCTAC+TGG | - | chr8_1:75292869-75292888 | None:intergenic | 40.0% |
| TCAATGCATCAACCGTCTTA+TGG | + | chr8_1:75292876-75292895 | Msa1214580:intron | 40.0% | |
| AGCTTCGCCTAAATCTTTCA+TGG | - | chr8_1:75293124-75293143 | None:intergenic | 40.0% | |
| TGTGTACATTCTATTGCACC+TGG | - | chr8_1:75293227-75293246 | None:intergenic | 40.0% | |
| ATGTACACAATGCCAAGGTT+CGG | + | chr8_1:75293238-75293257 | Msa1214580:CDS | 40.0% | |
| TCAAATTAACTCCCGAACCT+TGG | - | chr8_1:75293253-75293272 | None:intergenic | 40.0% | |
| ! | TTCAATGGCCGATTTAAAGC+TGG | + | chr8_1:75293281-75293300 | Msa1214580:CDS | 40.0% |
| !! | ATAGTCCGCCAGCTTTAAAT+CGG | - | chr8_1:75293292-75293311 | None:intergenic | 40.0% |
| GTGTAACTGTGCTATGTTGT+TGG | + | chr8_1:75293371-75293390 | Msa1214580:intron | 40.0% | |
| !!! | AATGGAGCTGGTTTTATTGG+TGG | + | chr8_1:75293491-75293510 | Msa1214580:CDS | 40.0% |
| TGGTAATTCGGTTGTCCGAA+AGG | + | chr8_1:75291409-75291428 | Msa1214580:CDS | 45.0% | |
| ! | CCGAAAGGCTTTTCCAATGA+AGG | + | chr8_1:75291424-75291443 | Msa1214580:CDS | 45.0% |
| GACACGTCTTCAATCAAGGT+TGG | - | chr8_1:75291598-75291617 | None:intergenic | 45.0% | |
| TACTGATCTACCAAAGGCTC+TGG | - | chr8_1:75291961-75291980 | None:intergenic | 45.0% | |
| ! | AGGATCCTTAAAGAGTGCAC+CGG | + | chr8_1:75292186-75292205 | Msa1214580:intron | 45.0% |
| CAAAGACACTATGTTCTCGC+CGG | - | chr8_1:75292616-75292635 | None:intergenic | 45.0% | |
| GCTCCCCAACTCCAAATAAT+TGG | - | chr8_1:75292780-75292799 | None:intergenic | 45.0% | |
| CATTGACATCTACTGGTGAG+CGG | - | chr8_1:75292862-75292881 | None:intergenic | 45.0% | |
| CGAGGAAAAAGAGAAGGACA+AGG | - | chr8_1:75292910-75292929 | None:intergenic | 45.0% | |
| TGTACACAATGCCAAGGTTC+GGG | + | chr8_1:75293239-75293258 | Msa1214580:CDS | 45.0% | |
| ! | AATGGCCGATTTAAAGCTGG+CGG | + | chr8_1:75293284-75293303 | Msa1214580:CDS | 45.0% |
| CACCGACACGTCTTCAATCA+AGG | - | chr8_1:75291602-75291621 | None:intergenic | 50.0% | |
| GAAATGCTAATGAGTGCCCC+CGG | + | chr8_1:75292053-75292072 | Msa1214580:intron | 50.0% | |
| AAATGCTAATGAGTGCCCCC+GGG | + | chr8_1:75292054-75292073 | Msa1214580:intron | 50.0% | |
| !! | AAGGTCCTTAAAGAGTGCCC+CGG | - | chr8_1:75292075-75292094 | None:intergenic | 50.0% |
| ! | GGATCCTTAAAGAGTGCACC+GGG | + | chr8_1:75292187-75292206 | Msa1214580:intron | 50.0% |
| ! | GATCCTTAAAGAGTGCACCG+GGG | + | chr8_1:75292188-75292207 | Msa1214580:intron | 50.0% |
| ! | ATCCTTAAAGAGTGCACCGG+GGG | + | chr8_1:75292189-75292208 | Msa1214580:intron | 50.0% |
| !! | TTAAAGCTGGCGGACTATGC+TGG | + | chr8_1:75293294-75293313 | Msa1214580:CDS | 50.0% |
| ! | TGTGGAAGCTGTAATGGAGC+TGG | + | chr8_1:75293479-75293498 | Msa1214580:CDS | 50.0% |
| !! | GTGTCGGTGTTGACATGTGC+TGG | + | chr8_1:75291613-75291632 | Msa1214580:intron | 55.0% |
| AATGCTAATGAGTGCCCCCG+GGG | + | chr8_1:75292055-75292074 | Msa1214580:intron | 55.0% | |
| !! | AGGTCCTTAAAGAGTGCCCC+GGG | - | chr8_1:75292074-75292093 | None:intergenic | 55.0% |
| TTCCCCCGGTGCACTCTTTA+AGG | - | chr8_1:75292194-75292213 | None:intergenic | 55.0% | |
| !! | GTCCTTAAAGAGTGCCCCGG+GGG | - | chr8_1:75292072-75292091 | None:intergenic | 60.0% |
| !! | GGTCCTTAAAGAGTGCCCCG+GGG | - | chr8_1:75292073-75292092 | None:intergenic | 60.0% |
| ! | GCGGACTATGCTGGCTATGC+AGG | + | chr8_1:75293303-75293322 | Msa1214580:CDS | 60.0% |
| ! | TGCCCCCGGGGCACTCTTTA+AGG | + | chr8_1:75292067-75292086 | Msa1214580:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 75291163 | 75293772 | 75291163 | ID=Msa1214580;Name=Msa1214580 |
| chr8_1 | mRNA | 75291163 | 75293772 | 75291163 | ID=Msa1214580-mRNA-1;Parent=Msa1214580;Name=Msa1214580-mRNA-1;_AED=0.31;_eAED=0.31;_QI=83|1|1|1|1|1|5|234|133 |
| chr8_1 | exon | 75291163 | 75291303 | 75291163 | ID=Msa1214580-mRNA-1:exon:25865;Parent=Msa1214580-mRNA-1 |
| chr8_1 | exon | 75291399 | 75291496 | 75291399 | ID=Msa1214580-mRNA-1:exon:25866;Parent=Msa1214580-mRNA-1 |
| chr8_1 | exon | 75292350 | 75292419 | 75292350 | ID=Msa1214580-mRNA-1:exon:25867;Parent=Msa1214580-mRNA-1 |
| chr8_1 | exon | 75293228 | 75293324 | 75293228 | ID=Msa1214580-mRNA-1:exon:25868;Parent=Msa1214580-mRNA-1 |
| chr8_1 | exon | 75293460 | 75293772 | 75293460 | ID=Msa1214580-mRNA-1:exon:25869;Parent=Msa1214580-mRNA-1 |
| chr8_1 | five_prime_UTR | 75291163 | 75291245 | 75291163 | ID=Msa1214580-mRNA-1:five_prime_utr;Parent=Msa1214580-mRNA-1 |
| chr8_1 | CDS | 75291246 | 75291303 | 75291246 | ID=Msa1214580-mRNA-1:cds;Parent=Msa1214580-mRNA-1 |
| chr8_1 | CDS | 75291399 | 75291496 | 75291399 | ID=Msa1214580-mRNA-1:cds;Parent=Msa1214580-mRNA-1 |
| chr8_1 | CDS | 75292350 | 75292419 | 75292350 | ID=Msa1214580-mRNA-1:cds;Parent=Msa1214580-mRNA-1 |
| chr8_1 | CDS | 75293228 | 75293324 | 75293228 | ID=Msa1214580-mRNA-1:cds;Parent=Msa1214580-mRNA-1 |
| chr8_1 | CDS | 75293460 | 75293538 | 75293460 | ID=Msa1214580-mRNA-1:cds;Parent=Msa1214580-mRNA-1 |
| chr8_1 | three_prime_UTR | 75293539 | 75293772 | 75293539 | ID=Msa1214580-mRNA-1:three_prime_utr;Parent=Msa1214580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
