Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216130 | XP_013458166.1 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.24e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216130 | sp|Q65WT0|BD31B_ORYSJ | 88.276 | 145 | 17 | 0 | 1 | 145 | 1 | 145 | 2.01e-96 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1216130 | Msa1216380 | 0.923870 | 1.501038e-89 | -8.615850e-47 |
| Msa1216130 | Msa1302020 | 0.869799 | 2.362320e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216130 | MtrunA17_Chr4g0065671 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.14e-106 | 300 |
| Msa1216130 | MtrunA17_Chr8g0378051 | 96.552 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 1.88e-104 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216130 | AT4G21110.1 | 86.207 | 145 | 20 | 0 | 1 | 145 | 1 | 145 | 6.07e-95 | 270 |
| Msa1216130 | AT4G21110.2 | 86.207 | 145 | 20 | 0 | 1 | 145 | 1 | 145 | 6.07e-95 | 270 |
Find 68 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAATTTCCTTTCTCTTA+TGG | 0.231250 | 8_1:+77730246 | None:intergenic |
| TCAATTAATTCCCAGCCTTC+TGG | 0.234580 | 8_1:+77730504 | None:intergenic |
| ACTCGGCTTGTCTTTACTTT+TGG | 0.267712 | 8_1:+77730534 | None:intergenic |
| TGTCTTCTCATTCTTCTTCT+CGG | 0.300836 | 8_1:-77731840 | Msa1216130:five_prime_UTR |
| TTCTCCTCCCTGAGCTCCTT+GGG | 0.301872 | 8_1:+77728812 | None:intergenic |
| CAAATACATAGCGGCTCTTC+TGG | 0.318337 | 8_1:+77730276 | None:intergenic |
| CTTCTCCTCCCTGAGCTCCT+TGG | 0.345032 | 8_1:+77728811 | None:intergenic |
| TATTAATCTGGAGGGTTTGT+TGG | 0.350816 | 8_1:-77728723 | Msa1216130:three_prime_UTR |
| GGACCTCAATTATATTAATC+TGG | 0.356373 | 8_1:-77728735 | Msa1216130:three_prime_UTR |
| GAGGTAAACTCCGTCGCTTC+CGG | 0.376156 | 8_1:-77731812 | Msa1216130:five_prime_UTR |
| AAAGAAAATGTGAGACTTTG+TGG | 0.382714 | 8_1:-77730319 | Msa1216130:CDS |
| ACCGCAACCTAATTGCAAAA+TGG | 0.383315 | 8_1:-77730184 | Msa1216130:CDS |
| GCAGAGTGCCCAAGGAGCTC+AGG | 0.388903 | 8_1:-77728820 | Msa1216130:CDS |
| CAATTAATTCCCAGCCTTCT+GGG | 0.404207 | 8_1:+77730505 | None:intergenic |
| TATGAATTCTGTTTAGATCA+AGG | 0.408300 | 8_1:-77730215 | Msa1216130:CDS |
| TTGTGCAAGTGGGGATTGAT+TGG | 0.417476 | 8_1:-77728756 | Msa1216130:exon |
| CCTACACTTCGTGAACTTCA+AGG | 0.446024 | 8_1:-77730480 | Msa1216130:CDS |
| AATGTTACAAAACTCAAGTC+AGG | 0.471208 | 8_1:+77728577 | None:intergenic |
| CTCAATTATATTAATCTGGA+GGG | 0.480934 | 8_1:-77728731 | Msa1216130:three_prime_UTR |
| AGCCTTCTGGGTATTTAACT+CGG | 0.490950 | 8_1:+77730517 | None:intergenic |
| GAGTTAAATACCCAGAAGGC+TGG | 0.492946 | 8_1:-77730515 | Msa1216130:CDS |
| CAAGGAGCTCAGGGAGGAGA+AGG | 0.494422 | 8_1:-77728810 | Msa1216130:CDS |
| CCTTTGCTTATTGTCGTCTG+AGG | 0.507480 | 8_1:-77731764 | Msa1216130:five_prime_UTR |
| GTGTGTTCATTGTGGTTGCA+AGG | 0.509966 | 8_1:-77728780 | Msa1216130:CDS |
| GTTGCAAGGGTTGTGCAAGT+GGG | 0.512248 | 8_1:-77728766 | Msa1216130:CDS |
| GGTTGCAAGGGTTGTGCAAG+TGG | 0.514571 | 8_1:-77728767 | Msa1216130:CDS |
| CAACATAGGCGTTCATAACC+AGG | 0.518122 | 8_1:+77728893 | None:intergenic |
| ACTTCACAAGAGCTATGCAT+TGG | 0.521024 | 8_1:-77728643 | Msa1216130:three_prime_UTR |
| CTTCACAAGAGCTATGCATT+GGG | 0.524120 | 8_1:-77728642 | Msa1216130:three_prime_UTR |
| CCTAATTGCAAAATGGAAGA+AGG | 0.526082 | 8_1:-77730177 | Msa1216130:intron |
| CTTTGCTTATTGTCGTCTGA+GGG | 0.527430 | 8_1:-77731763 | Msa1216130:intron |
| TTATCGTATAAGTTACTCAC+TGG | 0.530571 | 8_1:-77731877 | Msa1216130:five_prime_UTR |
| GTATGCACCTCAAGCAACAT+AGG | 0.540597 | 8_1:+77728879 | None:intergenic |
| CCTCCAGATTAATATAATTG+AGG | 0.542772 | 8_1:+77728732 | None:intergenic |
| CCTTGAAGTTCACGAAGTGT+AGG | 0.544038 | 8_1:+77730480 | None:intergenic |
| CGCACAACTGCCGGAAGCGA+CGG | 0.544706 | 8_1:+77731802 | None:intergenic |
| CAGAGTGCCCAAGGAGCTCA+GGG | 0.552081 | 8_1:-77728819 | Msa1216130:CDS |
| TGTGTTCATTGTGGTTGCAA+GGG | 0.552779 | 8_1:-77728779 | Msa1216130:CDS |
| GTGGTTGGTCGCACAACTGC+CGG | 0.555253 | 8_1:+77731793 | None:intergenic |
| TTGCAAGGGTTGTGCAAGTG+GGG | 0.556074 | 8_1:-77728765 | Msa1216130:CDS |
| TGAACTCTACCATAAGAGAA+AGG | 0.559158 | 8_1:-77730255 | Msa1216130:CDS |
| AAGAATGAGAAGACAAGTAG+TGG | 0.559866 | 8_1:+77731848 | None:intergenic |
| AGTTAAATACCCAGAAGGCT+GGG | 0.561161 | 8_1:-77730514 | Msa1216130:CDS |
| AAGCAAAGGTGAGCGGTGGT+TGG | 0.563572 | 8_1:+77731778 | None:intergenic |
| CCTCAATTATATTAATCTGG+AGG | 0.565832 | 8_1:-77728732 | Msa1216130:three_prime_UTR |
| CTTCAAGGAAAGATGAGGGA+AGG | 0.566524 | 8_1:-77730465 | Msa1216130:intron |
| TTGTGTATGCAGAGTGCCCA+AGG | 0.571684 | 8_1:-77728828 | Msa1216130:CDS |
| GTTATAGAGTGTGTTCATTG+TGG | 0.573951 | 8_1:-77728788 | Msa1216130:CDS |
| ATTCTTCTTCTCGGTTGTCG+AGG | 0.580297 | 8_1:-77731831 | Msa1216130:five_prime_UTR |
| GTGAACTTCAAGGAAAGATG+AGG | 0.592845 | 8_1:-77730470 | Msa1216130:CDS |
| CACTCTGCATACACAAGTGG+TGG | 0.609114 | 8_1:+77728835 | None:intergenic |
| CAGTAGTGATACAACGTAGA+GGG | 0.615913 | 8_1:+77728674 | None:intergenic |
| GCTGAGAATGACCCACATGA+TGG | 0.619377 | 8_1:-77730344 | Msa1216130:CDS |
| AATTAATAATAATACACAAG+GGG | 0.637439 | 8_1:+77728516 | None:intergenic |
| ACAATTAATAATAATACACA+AGG | 0.638593 | 8_1:+77728514 | None:intergenic |
| TGAACTTCAAGGAAAGATGA+GGG | 0.638807 | 8_1:-77730469 | Msa1216130:CDS |
| ATGAACGCCTATGTTGCTTG+AGG | 0.642564 | 8_1:-77728886 | Msa1216130:CDS |
| GGGCACTCTGCATACACAAG+TGG | 0.642607 | 8_1:+77728832 | None:intergenic |
| AGCCGAGTTAAATACCCAGA+AGG | 0.645736 | 8_1:-77730519 | Msa1216130:CDS |
| TTGTATTGACTATTGAGCGA+AGG | 0.655791 | 8_1:+77728478 | None:intergenic |
| CGACAATAAGCAAAGGTGAG+CGG | 0.662024 | 8_1:+77731771 | None:intergenic |
| CAATAAGCAAAGGTGAGCGG+TGG | 0.673579 | 8_1:+77731774 | None:intergenic |
| CAATTAATAATAATACACAA+GGG | 0.677423 | 8_1:+77728515 | None:intergenic |
| GTGGCGAAATTGTGATCGCG+TGG | 0.685360 | 8_1:+77728854 | None:intergenic |
| CCTCAGACGACAATAAGCAA+AGG | 0.685637 | 8_1:+77731764 | None:intergenic |
| ACAGTAGTGATACAACGTAG+AGG | 0.690605 | 8_1:+77728673 | None:intergenic |
| AGTGCCCAAGGAGCTCAGGG+AGG | 0.692740 | 8_1:-77728816 | Msa1216130:CDS |
| GGTAGAGTTCAAATACATAG+CGG | 0.738599 | 8_1:+77730267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAACTAATTTTGTAAA+TGG | - | chr8_1:77729170-77729189 | Msa1216130:intron | 10.0% |
| !!! | ATTTTATATATATTCCTATA+TGG | + | chr8_1:77731057-77731076 | None:intergenic | 10.0% |
| !! | TTCAAATTATTCAAGAAATT+TGG | + | chr8_1:77728814-77728833 | None:intergenic | 15.0% |
| !! | TTAACACATAAAAACAATTA+GGG | + | chr8_1:77729140-77729159 | None:intergenic | 15.0% |
| !! | ATTAACACATAAAAACAATT+AGG | + | chr8_1:77729141-77729160 | None:intergenic | 15.0% |
| !! | AAATGAAAATATGACATATA+AGG | + | chr8_1:77729802-77729821 | None:intergenic | 15.0% |
| !!! | TAACATTTTTGTCATTTATA+CGG | + | chr8_1:77730622-77730641 | None:intergenic | 15.0% |
| !! | AATTAATAATAATACACAAG+GGG | + | chr8_1:77731857-77731876 | None:intergenic | 15.0% |
| !! | CAATTAATAATAATACACAA+GGG | + | chr8_1:77731858-77731877 | None:intergenic | 15.0% |
| !! | ACAATTAATAATAATACACA+AGG | + | chr8_1:77731859-77731878 | None:intergenic | 15.0% |
| !!! | CTGTTCTTCAATATTTTTTA+GGG | - | chr8_1:77728642-77728661 | Msa1216130:three_prime_UTR | 20.0% |
| !! | AAGCTTAATTAAAATCACTT+AGG | + | chr8_1:77728672-77728691 | None:intergenic | 20.0% |
| !! | TATTATTCATAAGCTTATCA+AGG | + | chr8_1:77729065-77729084 | None:intergenic | 20.0% |
| !! | TCTTATCAATTGTATATACT+TGG | + | chr8_1:77729575-77729594 | None:intergenic | 20.0% |
| !! | TAACATAAATGGAACTTTAA+AGG | + | chr8_1:77729754-77729773 | None:intergenic | 20.0% |
| !! | ATATTGTTATATCCTTTATG+TGG | - | chr8_1:77730001-77730020 | Msa1216130:intron | 20.0% |
| !! | GTATAAATGACAAAAATGTT+AGG | - | chr8_1:77730621-77730640 | Msa1216130:intron | 20.0% |
| !! | AAAACCATTAAAAAACCAAA+AGG | + | chr8_1:77730748-77730767 | None:intergenic | 20.0% |
| ! | CCTAAAAAATATTGAAGAAC+AGG | + | chr8_1:77728644-77728663 | None:intergenic | 25.0% |
| !!! | CCTGTTCTTCAATATTTTTT+AGG | - | chr8_1:77728641-77728660 | Msa1216130:three_prime_UTR | 25.0% |
| !! | GTTTAAAACGTAAAGAGAAA+AGG | + | chr8_1:77728707-77728726 | None:intergenic | 25.0% |
| !! | TTTACGATGCTTATTTCTTA+AGG | - | chr8_1:77728756-77728775 | Msa1216130:exon | 25.0% |
| ! | ATTCAAGAAATTTGGATACA+CGG | + | chr8_1:77728806-77728825 | None:intergenic | 25.0% |
| ! | TTTCTTATGATATCATGTTG+TGG | - | chr8_1:77728852-77728871 | Msa1216130:CDS | 25.0% |
| ! | AAACCCTTAGTTTATAATGT+TGG | + | chr8_1:77728917-77728936 | None:intergenic | 25.0% |
| !! | TTATAAACTAAGGGTTTGTT+TGG | - | chr8_1:77728920-77728939 | Msa1216130:intron | 25.0% |
| !! | TATAAACTAAGGGTTTGTTT+GGG | - | chr8_1:77728921-77728940 | Msa1216130:intron | 25.0% |
| !! | TTTTATCCAATAATACCAGT+TGG | + | chr8_1:77729475-77729494 | None:intergenic | 25.0% |
| ! | ACTGGTATTATTGGATAAAA+TGG | - | chr8_1:77729475-77729494 | Msa1216130:intron | 25.0% |
| ! | CTGGTATTATTGGATAAAAT+GGG | - | chr8_1:77729476-77729495 | Msa1216130:intron | 25.0% |
| ! | TGGTATTATTGGATAAAATG+GGG | - | chr8_1:77729477-77729496 | Msa1216130:intron | 25.0% |
| ! | TCTATTCTACTTATGTTAAG+AGG | + | chr8_1:77729706-77729725 | None:intergenic | 25.0% |
| ! | ATTCTAGCAAGTAACATAAA+TGG | + | chr8_1:77729765-77729784 | None:intergenic | 25.0% |
| ! | GAATGAAAAAGAATACAGTA+AGG | + | chr8_1:77729957-77729976 | None:intergenic | 25.0% |
| !! | TGGTGTGCAATTTTAAATAT+AGG | + | chr8_1:77730077-77730096 | None:intergenic | 25.0% |
| ! | TAGAAATTTCCTTTCTCTTA+TGG | + | chr8_1:77730127-77730146 | None:intergenic | 25.0% |
| ! | TATGAATTCTGTTTAGATCA+AGG | - | chr8_1:77730155-77730174 | Msa1216130:intron | 25.0% |
| ! | GGAAAGTAAATTTCATTTGA+CGG | - | chr8_1:77730265-77730284 | Msa1216130:CDS | 25.0% |
| ! | GAAAGTAAATTTCATTTGAC+GGG | - | chr8_1:77730266-77730285 | Msa1216130:CDS | 25.0% |
| ! | AACAAGGTGATTAGAATTTA+AGG | + | chr8_1:77730463-77730482 | None:intergenic | 25.0% |
| ! | TCATTCATTGAATATTCATC+TGG | + | chr8_1:77730956-77730975 | None:intergenic | 25.0% |
| ! | TATTCAATGAATGAACCAAA+TGG | - | chr8_1:77730962-77730981 | Msa1216130:intron | 25.0% |
| !! | TTCACTATTAAACAAGTTGA+AGG | + | chr8_1:77731003-77731022 | None:intergenic | 25.0% |
| !! | TCAACTTGTTTAATAGTGAA+TGG | - | chr8_1:77731003-77731022 | Msa1216130:intron | 25.0% |
| ! | TTTAATAGTGAATGGTTGTT+TGG | - | chr8_1:77731011-77731030 | Msa1216130:intron | 25.0% |
| ! | CAAACAATTACTTTAGCAAA+GGG | + | chr8_1:77731091-77731110 | None:intergenic | 25.0% |
| ! | TCAAACAATTACTTTAGCAA+AGG | + | chr8_1:77731092-77731111 | None:intergenic | 25.0% |
| ! | ACTAAATCTACTCTTACAAT+TGG | - | chr8_1:77731178-77731197 | Msa1216130:intron | 25.0% |
| !!! | AGACAATATTTTTTTCCTAG+AGG | - | chr8_1:77731239-77731258 | Msa1216130:intron | 25.0% |
| ! | ATTAACTGAAGACAATGAAA+AGG | + | chr8_1:77731341-77731360 | None:intergenic | 25.0% |
| ! | ACCGTTGAAAATGAAATATA+TGG | - | chr8_1:77731384-77731403 | Msa1216130:intron | 25.0% |
| !! | GCCATATATTTCATTTTCAA+CGG | + | chr8_1:77731388-77731407 | None:intergenic | 25.0% |
| ! | CTCAATTATATTAATCTGGA+GGG | - | chr8_1:77731639-77731658 | Msa1216130:intron | 25.0% |
| TTATCGTATAAGTTACTCAC+TGG | - | chr8_1:77728493-77728512 | Msa1216130:three_prime_UTR | 30.0% | |
| AAAATATTGAAGAACAGGCA+GGG | + | chr8_1:77728639-77728658 | None:intergenic | 30.0% | |
| AAAAATATTGAAGAACAGGC+AGG | + | chr8_1:77728640-77728659 | None:intergenic | 30.0% | |
| TTTAATTAAGCTTATGCTCG+TGG | - | chr8_1:77728679-77728698 | Msa1216130:three_prime_UTR | 30.0% | |
| ! | GGTTTTTGAATCAACAACAA+TGG | - | chr8_1:77728777-77728796 | Msa1216130:CDS | 30.0% |
| TGTGCCAACATTATAAACTA+AGG | - | chr8_1:77728910-77728929 | Msa1216130:intron | 30.0% | |
| GTGCCAACATTATAAACTAA+GGG | - | chr8_1:77728911-77728930 | Msa1216130:intron | 30.0% | |
| CAGAAATAAGTCAATCCAAA+CGG | - | chr8_1:77729113-77729132 | Msa1216130:intron | 30.0% | |
| AGAAATAAGTCAATCCAAAC+GGG | - | chr8_1:77729114-77729133 | Msa1216130:intron | 30.0% | |
| !!! | ACTTGATAGCTAGCTTTTAA+GGG | + | chr8_1:77729242-77729261 | None:intergenic | 30.0% |
| AGAATTTACAGTAAAACACC+TGG | - | chr8_1:77729508-77729527 | Msa1216130:intron | 30.0% | |
| AGTTAGGTTAAGTTAGTTAG+TGG | + | chr8_1:77729653-77729672 | None:intergenic | 30.0% | |
| TTAGTTAAGAAGAGTTCACT+TGG | + | chr8_1:77729678-77729697 | None:intergenic | 30.0% | |
| CAAGCTATGAAGTTGTTTAT+AGG | + | chr8_1:77729729-77729748 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTTGCCATCATGT+GGG | + | chr8_1:77730040-77730059 | None:intergenic | 30.0% |
| AAAGAAAATGTGAGACTTTG+TGG | - | chr8_1:77730051-77730070 | Msa1216130:intron | 30.0% | |
| GAGATAGAATAAGTATGATC+AGG | - | chr8_1:77730288-77730307 | Msa1216130:CDS | 30.0% | |
| AGAAGTGAGAAATCTATATC+TGG | - | chr8_1:77730312-77730331 | Msa1216130:CDS | 30.0% | |
| GAAGTGAGAAATCTATATCT+GGG | - | chr8_1:77730313-77730332 | Msa1216130:CDS | 30.0% | |
| ! | TATGGTTTGTAGCAAAAACA+AGG | + | chr8_1:77730479-77730498 | None:intergenic | 30.0% |
| CAATTTATTCTTGCACTATG+AGG | + | chr8_1:77730578-77730597 | None:intergenic | 30.0% | |
| GACAAAAATGTTAGGAGAAA+TGG | - | chr8_1:77730629-77730648 | Msa1216130:intron | 30.0% | |
| AAAAATGTTAGGAGAAATGG+TGG | - | chr8_1:77730632-77730651 | Msa1216130:intron | 30.0% | |
| AATGATCAAGTCCTTTACTT+TGG | + | chr8_1:77730719-77730738 | None:intergenic | 30.0% | |
| ! | TTGATCATTTAGTGACCTTT+TGG | - | chr8_1:77730730-77730749 | Msa1216130:intron | 30.0% |
| !!! | GTGACCTTTTGGTTTTTTAA+TGG | - | chr8_1:77730741-77730760 | Msa1216130:intron | 30.0% |
| ! | GAACAATTTATTTGAGACCT+TGG | + | chr8_1:77730810-77730829 | None:intergenic | 30.0% |
| !! | TTTGGTGTATGTCTTAGTTT+TGG | - | chr8_1:77731029-77731048 | Msa1216130:intron | 30.0% |
| !!! | TTTTTTTCCTAGAGGTTACA+AGG | - | chr8_1:77731247-77731266 | Msa1216130:intron | 30.0% |
| GGACCTCAATTATATTAATC+TGG | - | chr8_1:77731635-77731654 | Msa1216130:intron | 30.0% | |
| CCTCCAGATTAATATAATTG+AGG | + | chr8_1:77731641-77731660 | None:intergenic | 30.0% | |
| CCTCAATTATATTAATCTGG+AGG | - | chr8_1:77731638-77731657 | Msa1216130:intron | 30.0% | |
| AATGTTACAAAACTCAAGTC+AGG | + | chr8_1:77731796-77731815 | None:intergenic | 30.0% | |
| !! | GACTTGAGTTTTGTAACATT+TGG | - | chr8_1:77731796-77731815 | Msa1216130:five_prime_UTR | 30.0% |
| AAGAATGAGAAGACAAGTAG+TGG | + | chr8_1:77728525-77728544 | None:intergenic | 35.0% | |
| TGTCTTCTCATTCTTCTTCT+CGG | - | chr8_1:77728530-77728549 | Msa1216130:three_prime_UTR | 35.0% | |
| CTTATGATATCATGTTGTGG+TGG | - | chr8_1:77728855-77728874 | Msa1216130:CDS | 35.0% | |
| !!! | GACTTGATAGCTAGCTTTTA+AGG | + | chr8_1:77729243-77729262 | None:intergenic | 35.0% |
| TCGAAACCAACTGGTATTAT+TGG | - | chr8_1:77729466-77729485 | Msa1216130:intron | 35.0% | |
| ! | TGTATATACTTGGAGCCTTT+TGG | + | chr8_1:77729565-77729584 | None:intergenic | 35.0% |
| CATGTTGCCTATAGATAAGA+GGG | + | chr8_1:77729616-77729635 | None:intergenic | 35.0% | |
| ACATGTTGCCTATAGATAAG+AGG | + | chr8_1:77729617-77729636 | None:intergenic | 35.0% | |
| AAGAGTTCACTTGGTAAGTT+AGG | + | chr8_1:77729669-77729688 | None:intergenic | 35.0% | |
| TGAACTTCAAGGAAAGATGA+GGG | - | chr8_1:77729901-77729920 | Msa1216130:intron | 35.0% | |
| ! | CATTTTCTTTTGCCATCATG+TGG | + | chr8_1:77730041-77730060 | None:intergenic | 35.0% |
| GGTAGAGTTCAAATACATAG+CGG | + | chr8_1:77730106-77730125 | None:intergenic | 35.0% | |
| TGAACTCTACCATAAGAGAA+AGG | - | chr8_1:77730115-77730134 | Msa1216130:intron | 35.0% | |
| !! | TCCATTTTGCAATTAGGTTG+CGG | + | chr8_1:77730190-77730209 | None:intergenic | 35.0% |
| ! | CCTTCTTCCATTTTGCAATT+AGG | + | chr8_1:77730196-77730215 | None:intergenic | 35.0% |
| CCTAATTGCAAAATGGAAGA+AGG | - | chr8_1:77730193-77730212 | Msa1216130:CDS | 35.0% | |
| GTGAAGTAACCTTAAGCATA+TGG | - | chr8_1:77730387-77730406 | Msa1216130:intron | 35.0% | |
| GAGACATATCCATATGCTTA+AGG | + | chr8_1:77730399-77730418 | None:intergenic | 35.0% | |
| !!! | CCTTCTCGAGCAATTTTTTA+TGG | + | chr8_1:77730497-77730516 | None:intergenic | 35.0% |
| CCATAAAAAATTGCTCGAGA+AGG | - | chr8_1:77730494-77730513 | Msa1216130:CDS | 35.0% | |
| GAGTAAACTCTCCAAAGTAA+AGG | - | chr8_1:77730705-77730724 | Msa1216130:intron | 35.0% | |
| TAAAGTTATGCGTGTGAGTA+AGG | - | chr8_1:77730782-77730801 | Msa1216130:intron | 35.0% | |
| AGTGAACTACAATCAGCTTT+AGG | + | chr8_1:77730859-77730878 | None:intergenic | 35.0% | |
| TAAAGCTGATTGTAGTTCAC+TGG | - | chr8_1:77730858-77730877 | Msa1216130:intron | 35.0% | |
| !!! | TCTTAGTTTTGGCTCCATAT+AGG | - | chr8_1:77731040-77731059 | Msa1216130:intron | 35.0% |
| CATCGTAGTTGCTATCTATA+AGG | - | chr8_1:77731134-77731153 | Msa1216130:intron | 35.0% | |
| GCAGTAAACAACAGTGATAT+TGG | + | chr8_1:77731319-77731338 | None:intergenic | 35.0% | |
| GTTATAGAGTGTGTTCATTG+TGG | - | chr8_1:77731582-77731601 | Msa1216130:intron | 35.0% | |
| TATTAATCTGGAGGGTTTGT+TGG | - | chr8_1:77731647-77731666 | Msa1216130:intron | 35.0% | |
| !!! | AAGTCAGGTTTTGAACTATG+CGG | + | chr8_1:77731781-77731800 | None:intergenic | 35.0% |
| !! | TTGTATTGACTATTGAGCGA+AGG | + | chr8_1:77731895-77731914 | None:intergenic | 35.0% |
| CTTTGCTTATTGTCGTCTGA+GGG | - | chr8_1:77728607-77728626 | Msa1216130:three_prime_UTR | 40.0% | |
| ! | AACTAAGGGTTTGTTTGGGT+TGG | - | chr8_1:77728925-77728944 | Msa1216130:intron | 40.0% |
| AAAAACAATTAGGGCCCGTT+TGG | + | chr8_1:77729131-77729150 | None:intergenic | 40.0% | |
| !!! | GATAGCTAGCTTTTAAGGGA+GGG | + | chr8_1:77729238-77729257 | None:intergenic | 40.0% |
| !!! | TGATAGCTAGCTTTTAAGGG+AGG | + | chr8_1:77729239-77729258 | None:intergenic | 40.0% |
| AATTCCACATCAGGCAGTAT+GGG | + | chr8_1:77729289-77729308 | None:intergenic | 40.0% | |
| AAATTCCACATCAGGCAGTA+TGG | + | chr8_1:77729290-77729309 | None:intergenic | 40.0% | |
| TAGAGTCTCTCTAATACTCC+AGG | + | chr8_1:77729529-77729548 | None:intergenic | 40.0% | |
| GATAAGATAGCTCACTCTCT+AGG | - | chr8_1:77729588-77729607 | Msa1216130:intron | 40.0% | |
| !! | ACTCGGCTTGTCTTTACTTT+TGG | + | chr8_1:77729839-77729858 | None:intergenic | 40.0% |
| AGCCTTCTGGGTATTTAACT+CGG | + | chr8_1:77729856-77729875 | None:intergenic | 40.0% | |
| AGTTAAATACCCAGAAGGCT+GGG | - | chr8_1:77729856-77729875 | Msa1216130:intron | 40.0% | |
| CAATTAATTCCCAGCCTTCT+GGG | + | chr8_1:77729868-77729887 | None:intergenic | 40.0% | |
| TCAATTAATTCCCAGCCTTC+TGG | + | chr8_1:77729869-77729888 | None:intergenic | 40.0% | |
| GTGAACTTCAAGGAAAGATG+AGG | - | chr8_1:77729900-77729919 | Msa1216130:intron | 40.0% | |
| ACCGCAACCTAATTGCAAAA+TGG | - | chr8_1:77730186-77730205 | Msa1216130:CDS | 40.0% | |
| GTTACACTTTCCTACTCTTG+TGG | + | chr8_1:77730362-77730381 | None:intergenic | 40.0% | |
| GCTTAAGGTTACTTCACCTA+GGG | + | chr8_1:77730384-77730403 | None:intergenic | 40.0% | |
| TGCTTAAGGTTACTTCACCT+AGG | + | chr8_1:77730385-77730404 | None:intergenic | 40.0% | |
| AGTAGGACTGCAAATGATAC+AGG | - | chr8_1:77730434-77730453 | Msa1216130:intron | 40.0% | |
| GCTCTCTGATCATCCTAAAA+AGG | - | chr8_1:77730530-77730549 | Msa1216130:CDS | 40.0% | |
| TCCTAAAAAGGTCATTTCGC+AGG | - | chr8_1:77730542-77730561 | Msa1216130:exon | 40.0% | |
| CCTAAAAAGGTCATTTCGCA+GGG | - | chr8_1:77730543-77730562 | Msa1216130:exon | 40.0% | |
| TTAGGAGAAATGGTGGTAGA+AGG | - | chr8_1:77730639-77730658 | Msa1216130:intron | 40.0% | |
| ! | CTGATTGTAGTTCACTGGTT+TGG | - | chr8_1:77730863-77730882 | Msa1216130:intron | 40.0% |
| TTACCAAGATTCACGCCATT+TGG | + | chr8_1:77730980-77730999 | None:intergenic | 40.0% | |
| ACAACAACCTTGTAACCTCT+AGG | + | chr8_1:77731257-77731276 | None:intergenic | 40.0% | |
| !! | TTTGTTTCTGAATTGCAGCC+TGG | - | chr8_1:77731459-77731478 | Msa1216130:intron | 40.0% |
| TGTGTTCATTGTGGTTGCAA+GGG | - | chr8_1:77731591-77731610 | Msa1216130:intron | 40.0% | |
| CAGTAGTGATACAACGTAGA+GGG | + | chr8_1:77731699-77731718 | None:intergenic | 40.0% | |
| ACAGTAGTGATACAACGTAG+AGG | + | chr8_1:77731700-77731719 | None:intergenic | 40.0% | |
| ACTTCACAAGAGCTATGCAT+TGG | - | chr8_1:77731727-77731746 | Msa1216130:intron | 40.0% | |
| CTTCACAAGAGCTATGCATT+GGG | - | chr8_1:77731728-77731747 | Msa1216130:intron | 40.0% | |
| ATTCTTCTTCTCGGTTGTCG+AGG | - | chr8_1:77728539-77728558 | Msa1216130:three_prime_UTR | 45.0% | |
| CGACAATAAGCAAAGGTGAG+CGG | + | chr8_1:77728602-77728621 | None:intergenic | 45.0% | |
| CCTCAGACGACAATAAGCAA+AGG | + | chr8_1:77728609-77728628 | None:intergenic | 45.0% | |
| CCTTTGCTTATTGTCGTCTG+AGG | - | chr8_1:77728606-77728625 | Msa1216130:three_prime_UTR | 45.0% | |
| !! | AGGGAGGGTACTTATCAAGT+TGG | + | chr8_1:77729223-77729242 | None:intergenic | 45.0% |
| TCACTCTACAACGCTGTACT+TGG | - | chr8_1:77729374-77729393 | Msa1216130:intron | 45.0% | |
| TCCAGTTGATCGAAACCAAC+TGG | - | chr8_1:77729457-77729476 | Msa1216130:intron | 45.0% | |
| ! | ACCAGTTGGTTTCGATCAAC+TGG | + | chr8_1:77729461-77729480 | None:intergenic | 45.0% |
| TAGACTCTCCCAATGCCAAA+AGG | - | chr8_1:77729547-77729566 | Msa1216130:intron | 45.0% | |
| ! | ACTTGGAGCCTTTTGGCATT+GGG | + | chr8_1:77729558-77729577 | None:intergenic | 45.0% |
| ! | TACTTGGAGCCTTTTGGCAT+TGG | + | chr8_1:77729559-77729578 | None:intergenic | 45.0% |
| CTAGGCTCCCTCTTATCTAT+AGG | - | chr8_1:77729606-77729625 | Msa1216130:intron | 45.0% | |
| AGCCGAGTTAAATACCCAGA+AGG | - | chr8_1:77729851-77729870 | Msa1216130:intron | 45.0% | |
| GAGTTAAATACCCAGAAGGC+TGG | - | chr8_1:77729855-77729874 | Msa1216130:intron | 45.0% | |
| CCTTGAAGTTCACGAAGTGT+AGG | + | chr8_1:77729893-77729912 | None:intergenic | 45.0% | |
| CCTACACTTCGTGAACTTCA+AGG | - | chr8_1:77729890-77729909 | Msa1216130:intron | 45.0% | |
| CTTCAAGGAAAGATGAGGGA+AGG | - | chr8_1:77729905-77729924 | Msa1216130:intron | 45.0% | |
| CATTCTCAGCTGCCACATAA+AGG | + | chr8_1:77730016-77730035 | None:intergenic | 45.0% | |
| CAAATACATAGCGGCTCTTC+TGG | + | chr8_1:77730097-77730116 | None:intergenic | 45.0% | |
| TGGTGGTAAAAGGCAAGTGT+TGG | + | chr8_1:77730342-77730361 | None:intergenic | 45.0% | |
| CCTACTCTTGTGGTGGTAAA+AGG | + | chr8_1:77730352-77730371 | None:intergenic | 45.0% | |
| ! | CCTTTTACCACCACAAGAGT+AGG | - | chr8_1:77730349-77730368 | Msa1216130:intron | 45.0% |
| ACACTTTCCTACTCTTGTGG+TGG | + | chr8_1:77730359-77730378 | None:intergenic | 45.0% | |
| ! | GAGTAGGAAAGTGTAACCCT+AGG | - | chr8_1:77730365-77730384 | Msa1216130:intron | 45.0% |
| TCTCCTACCACATACACAGT+AGG | - | chr8_1:77730417-77730436 | Msa1216130:intron | 45.0% | |
| AGTCCTACTGTGTATGTGGT+AGG | + | chr8_1:77730423-77730442 | None:intergenic | 45.0% | |
| TTGCAGTCCTACTGTGTATG+TGG | + | chr8_1:77730427-77730446 | None:intergenic | 45.0% | |
| ! | CCCTGCGAAATGACCTTTTT+AGG | + | chr8_1:77730546-77730565 | None:intergenic | 45.0% |
| GGATCTAGCTAACAAGCATC+AGG | + | chr8_1:77730601-77730620 | None:intergenic | 45.0% | |
| TTCTGTCTGTGGGCAAATTG+TGG | + | chr8_1:77730923-77730942 | None:intergenic | 45.0% | |
| TGCCCACAGACAGAATTCTA+AGG | - | chr8_1:77730928-77730947 | Msa1216130:intron | 45.0% | |
| GCCCACAGACAGAATTCTAA+GGG | - | chr8_1:77730929-77730948 | Msa1216130:intron | 45.0% | |
| CCCCTTAGAATTCTGTCTGT+GGG | + | chr8_1:77730933-77730952 | None:intergenic | 45.0% | |
| CCCACAGACAGAATTCTAAG+GGG | - | chr8_1:77730930-77730949 | Msa1216130:intron | 45.0% | |
| GAACCAAATGGCGTGAATCT+TGG | - | chr8_1:77730974-77730993 | Msa1216130:intron | 45.0% | |
| CAACATAGGCGTTCATAACC+AGG | + | chr8_1:77731480-77731499 | None:intergenic | 45.0% | |
| ! | ATGAACGCCTATGTTGCTTG+AGG | - | chr8_1:77731484-77731503 | Msa1216130:intron | 45.0% |
| GTATGCACCTCAAGCAACAT+AGG | + | chr8_1:77731494-77731513 | None:intergenic | 45.0% | |
| GTGTGTTCATTGTGGTTGCA+AGG | - | chr8_1:77731590-77731609 | Msa1216130:intron | 45.0% | |
| TTGTGCAAGTGGGGATTGAT+TGG | - | chr8_1:77731614-77731633 | Msa1216130:intron | 45.0% | |
| !!! | ATTTATTTTGTTTTTTTTAT+AGG | - | chr8_1:77730244-77730263 | Msa1216130:CDS | 5.0% |
| CAATAAGCAAAGGTGAGCGG+TGG | + | chr8_1:77728599-77728618 | None:intergenic | 50.0% | |
| ! | TGCTCAATGGAGTGTCTGAG+TGG | + | chr8_1:77729265-77729284 | None:intergenic | 50.0% |
| AGGCAGTATGGGATGCTCAA+TGG | + | chr8_1:77729278-77729297 | None:intergenic | 50.0% | |
| GTGCACGCAAATTCCACATC+AGG | + | chr8_1:77729298-77729317 | None:intergenic | 50.0% | |
| !! | TCATGGACGGTGCTACAGTA+GGG | + | chr8_1:77729334-77729353 | None:intergenic | 50.0% |
| ! | AACGCTGTACTTGGCCTTTC+TGG | - | chr8_1:77729383-77729402 | Msa1216130:intron | 50.0% |
| GAATCAGAGCTGGTTGTTGG+TGG | + | chr8_1:77729439-77729458 | None:intergenic | 50.0% | |
| CTGGAATCAGAGCTGGTTGT+TGG | + | chr8_1:77729442-77729461 | None:intergenic | 50.0% | |
| CGATCAACTGGAATCAGAGC+TGG | + | chr8_1:77729449-77729468 | None:intergenic | 50.0% | |
| GCTGAGAATGACCCACATGA+TGG | - | chr8_1:77730026-77730045 | Msa1216130:intron | 50.0% | |
| !! | TAGGATGATCAGAGAGCACC+AGG | + | chr8_1:77730527-77730546 | None:intergenic | 50.0% |
| GCCCCTTAGAATTCTGTCTG+TGG | + | chr8_1:77730934-77730953 | None:intergenic | 50.0% | |
| CACTCTGCATACACAAGTGG+TGG | + | chr8_1:77731538-77731557 | None:intergenic | 50.0% | |
| ! | TTGTGTATGCAGAGTGCCCA+AGG | - | chr8_1:77731542-77731561 | Msa1216130:intron | 50.0% |
| GTTGCAAGGGTTGTGCAAGT+GGG | - | chr8_1:77731604-77731623 | Msa1216130:intron | 50.0% | |
| TTGCAAGGGTTGTGCAAGTG+GGG | - | chr8_1:77731605-77731624 | Msa1216130:intron | 50.0% | |
| GAGGTAAACTCCGTCGCTTC+CGG | - | chr8_1:77728558-77728577 | Msa1216130:three_prime_UTR | 55.0% | |
| AAGCAAAGGTGAGCGGTGGT+TGG | + | chr8_1:77728595-77728614 | None:intergenic | 55.0% | |
| GCATCCCATACTGCCTGATG+TGG | - | chr8_1:77729282-77729301 | Msa1216130:intron | 55.0% | |
| !! | CGGTGCTACAGTAGGGGTTT+GGG | + | chr8_1:77729327-77729346 | None:intergenic | 55.0% |
| !! | ACGGTGCTACAGTAGGGGTT+TGG | + | chr8_1:77729328-77729347 | None:intergenic | 55.0% |
| !! | CATGGACGGTGCTACAGTAG+GGG | + | chr8_1:77729333-77729352 | None:intergenic | 55.0% |
| !! | CTCATGGACGGTGCTACAGT+AGG | + | chr8_1:77729335-77729354 | None:intergenic | 55.0% |
| CGCAAGTCAGCTCTCATGGA+CGG | + | chr8_1:77729347-77729366 | None:intergenic | 55.0% | |
| !! | CGTCCATGAGAGCTGACTTG+CGG | - | chr8_1:77729345-77729364 | Msa1216130:intron | 55.0% |
| TGTCCGCAAGTCAGCTCTCA+TGG | + | chr8_1:77729351-77729370 | None:intergenic | 55.0% | |
| TACGGAGGAGCTGACCAGAA+AGG | + | chr8_1:77729400-77729419 | None:intergenic | 55.0% | |
| ! | TTTCTGGTCAGCTCCTCCGT+AGG | - | chr8_1:77729399-77729418 | Msa1216130:intron | 55.0% |
| !! | GGTTGTTGGTGGCTCGGAAA+GGG | + | chr8_1:77729428-77729447 | None:intergenic | 55.0% |
| !! | TGGTTGTTGGTGGCTCGGAA+AGG | + | chr8_1:77729429-77729448 | None:intergenic | 55.0% |
| !! | AGAGCTGGTTGTTGGTGGCT+CGG | + | chr8_1:77729434-77729453 | None:intergenic | 55.0% |
| !! | GCTCGAGAAGGTATTGCACC+TGG | - | chr8_1:77730506-77730525 | Msa1216130:CDS | 55.0% |
| TGCGTGTGAGTAAGGAGCCA+AGG | - | chr8_1:77730790-77730809 | Msa1216130:intron | 55.0% | |
| GTGGCGAAATTGTGATCGCG+TGG | + | chr8_1:77731519-77731538 | None:intergenic | 55.0% | |
| GGGCACTCTGCATACACAAG+TGG | + | chr8_1:77731541-77731560 | None:intergenic | 55.0% | |
| TTCTCCTCCCTGAGCTCCTT+GGG | + | chr8_1:77731561-77731580 | None:intergenic | 55.0% | |
| GGTTGCAAGGGTTGTGCAAG+TGG | - | chr8_1:77731603-77731622 | Msa1216130:intron | 55.0% | |
| ! | GTGGTTGGTCGCACAACTGC+CGG | + | chr8_1:77728580-77728599 | None:intergenic | 60.0% |
| TCGGAAAGGGCTACCTACGG+AGG | + | chr8_1:77729415-77729434 | None:intergenic | 60.0% | |
| GGCTCGGAAAGGGCTACCTA+CGG | + | chr8_1:77729418-77729437 | None:intergenic | 60.0% | |
| ! | CAGAGTGCCCAAGGAGCTCA+GGG | - | chr8_1:77731551-77731570 | Msa1216130:intron | 60.0% |
| CTTCTCCTCCCTGAGCTCCT+TGG | + | chr8_1:77731562-77731581 | None:intergenic | 60.0% | |
| CAAGGAGCTCAGGGAGGAGA+AGG | - | chr8_1:77731560-77731579 | Msa1216130:intron | 60.0% | |
| CGCACAACTGCCGGAAGCGA+CGG | + | chr8_1:77728571-77728590 | None:intergenic | 65.0% | |
| ! | GCAGAGTGCCCAAGGAGCTC+AGG | - | chr8_1:77731550-77731569 | Msa1216130:intron | 65.0% |
| AGTGCCCAAGGAGCTCAGGG+AGG | - | chr8_1:77731554-77731573 | Msa1216130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 77728452 | 77731940 | 77728452 | ID=Msa1216130;Name=Msa1216130 |
| chr8_1 | mRNA | 77728452 | 77731940 | 77728452 | ID=Msa1216130-mRNA-1;Parent=Msa1216130;Name=Msa1216130-mRNA-1;_AED=0.08;_eAED=0.08;_QI=183|1|1|1|0.66|0.75|4|308|145 |
| chr8_1 | exon | 77728452 | 77728915 | 77728452 | ID=Msa1216130-mRNA-1:exon:26861;Parent=Msa1216130-mRNA-1 |
| chr8_1 | exon | 77730178 | 77730365 | 77730178 | ID=Msa1216130-mRNA-1:exon:26860;Parent=Msa1216130-mRNA-1 |
| chr8_1 | exon | 77730466 | 77730565 | 77730466 | ID=Msa1216130-mRNA-1:exon:26859;Parent=Msa1216130-mRNA-1 |
| chr8_1 | exon | 77731764 | 77731940 | 77731764 | ID=Msa1216130-mRNA-1:exon:26858;Parent=Msa1216130-mRNA-1 |
| chr8_1 | five_prime_UTR | 77731764 | 77731940 | 77731764 | ID=Msa1216130-mRNA-1:five_prime_utr;Parent=Msa1216130-mRNA-1 |
| chr8_1 | five_prime_UTR | 77730560 | 77730565 | 77730560 | ID=Msa1216130-mRNA-1:five_prime_utr;Parent=Msa1216130-mRNA-1 |
| chr8_1 | CDS | 77730466 | 77730559 | 77730466 | ID=Msa1216130-mRNA-1:cds;Parent=Msa1216130-mRNA-1 |
| chr8_1 | CDS | 77730178 | 77730365 | 77730178 | ID=Msa1216130-mRNA-1:cds;Parent=Msa1216130-mRNA-1 |
| chr8_1 | CDS | 77728760 | 77728915 | 77728760 | ID=Msa1216130-mRNA-1:cds;Parent=Msa1216130-mRNA-1 |
| chr8_1 | three_prime_UTR | 77728452 | 77728759 | 77728452 | ID=Msa1216130-mRNA-1:three_prime_utr;Parent=Msa1216130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
