Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216380 | XP_013458166.1 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.24e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216380 | sp|Q65WT0|BD31B_ORYSJ | 88.276 | 145 | 17 | 0 | 1 | 145 | 1 | 145 | 2.01e-96 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216380 | A0A072UR78 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 5.92e-103 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1216130 | Msa1216380 | 0.923870 | 1.501038e-89 | -8.615850e-47 |
| Msa1216380 | Msa1302020 | 0.952336 | 3.017739e-110 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216380 | MtrunA17_Chr4g0065671 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.14e-106 | 300 |
| Msa1216380 | MtrunA17_Chr8g0378051 | 96.552 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 1.88e-104 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216380 | AT4G21110.1 | 86.207 | 145 | 20 | 0 | 1 | 145 | 1 | 145 | 6.07e-95 | 270 |
| Msa1216380 | AT4G21110.2 | 86.207 | 145 | 20 | 0 | 1 | 145 | 1 | 145 | 6.07e-95 | 270 |
Find 71 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAATTTCCTTTCTCTTA+TGG | 0.231250 | 8_1:+78096631 | None:intergenic |
| TCAATTAATTCCCAGCCTTC+TGG | 0.234580 | 8_1:+78096889 | None:intergenic |
| TGTCTTCTCATTCTTCTTCT+CGG | 0.300836 | 8_1:-78098217 | Msa1216380:five_prime_UTR |
| TTCTCCTCCCTGAGCTCCTT+GGG | 0.301872 | 8_1:+78095195 | None:intergenic |
| CAAATACATAGCGGCTCTTC+TGG | 0.318337 | 8_1:+78096661 | None:intergenic |
| ACTCGGCTTGTCTTTACTTT+CGG | 0.326256 | 8_1:+78096919 | None:intergenic |
| CTTCTCCTCCCTGAGCTCCT+TGG | 0.345032 | 8_1:+78095194 | None:intergenic |
| TATTAATCTGGAGGGTTTGT+TGG | 0.350816 | 8_1:-78095106 | Msa1216380:three_prime_UTR |
| GGACCTCAATTATATTAATC+TGG | 0.356373 | 8_1:-78095118 | Msa1216380:three_prime_UTR |
| GAGGTAAACTCCGTCGCTTC+CGG | 0.376156 | 8_1:-78098189 | Msa1216380:five_prime_UTR |
| AAAGAAAATGTGAGACTTTG+TGG | 0.382714 | 8_1:-78096704 | Msa1216380:CDS |
| ACCGCAACCTAATTGCAAAA+TGG | 0.383315 | 8_1:-78096569 | Msa1216380:CDS |
| GCAGAGTGCCCAAGGAGCTC+AGG | 0.388903 | 8_1:-78095203 | Msa1216380:CDS |
| CAATTAATTCCCAGCCTTCT+GGG | 0.404207 | 8_1:+78096890 | None:intergenic |
| TATGAATTCTGTTTAGATCA+AGG | 0.408300 | 8_1:-78096600 | Msa1216380:CDS |
| TTGTGCAAGTGGGGATTGAT+TGG | 0.417476 | 8_1:-78095139 | Msa1216380:exon |
| CCTACACTTCGTGAACTTCA+AGG | 0.446024 | 8_1:-78096865 | Msa1216380:CDS |
| AATGTTACAAAACTCAAGTC+AGG | 0.471208 | 8_1:+78094960 | None:intergenic |
| CTCAATTATATTAATCTGGA+GGG | 0.480934 | 8_1:-78095114 | Msa1216380:three_prime_UTR |
| AGCCTTCTGGGTATTTAACT+CGG | 0.490950 | 8_1:+78096902 | None:intergenic |
| GAGTTAAATACCCAGAAGGC+TGG | 0.492946 | 8_1:-78096900 | Msa1216380:CDS |
| CAAGGAGCTCAGGGAGGAGA+AGG | 0.494422 | 8_1:-78095193 | Msa1216380:CDS |
| CCTTTGCTTATTGTCGTCTG+AGG | 0.507480 | 8_1:-78098137 | Msa1216380:five_prime_UTR |
| GTGTGTTCATTGTGGTTGCA+AGG | 0.509966 | 8_1:-78095163 | Msa1216380:CDS |
| GTTGCAAGGGTTGTGCAAGT+GGG | 0.512248 | 8_1:-78095149 | Msa1216380:CDS |
| GGTTGCAAGGGTTGTGCAAG+TGG | 0.514571 | 8_1:-78095150 | Msa1216380:CDS |
| CAACATAGGCGTTCATAACC+AGG | 0.518122 | 8_1:+78095276 | None:intergenic |
| ACTTCACAAGAGCTATGCAT+TGG | 0.521024 | 8_1:-78095026 | Msa1216380:three_prime_UTR |
| CTTCACAAGAGCTATGCATT+GGG | 0.524120 | 8_1:-78095025 | Msa1216380:three_prime_UTR |
| CCTAATTGCAAAATGGAAGA+AGG | 0.526082 | 8_1:-78096562 | Msa1216380:intron |
| CTTTGCTTATTGTCGTCTGA+GGG | 0.527430 | 8_1:-78098136 | Msa1216380:intron |
| AAAGGTGAGCGGTGGGTGGT+TGG | 0.529818 | 8_1:+78098155 | None:intergenic |
| TTATCGTATAAGTTACTCAC+TGG | 0.530571 | 8_1:-78098254 | Msa1216380:five_prime_UTR |
| GTATGCACCTCAAGCAACAT+AGG | 0.540597 | 8_1:+78095262 | None:intergenic |
| CCTCCAGATTAATATAATTG+AGG | 0.542772 | 8_1:+78095115 | None:intergenic |
| AACAATTAATAATAATACAC+AGG | 0.543547 | 8_1:+78094896 | None:intergenic |
| CCTTGAAGTTCACGAAGTGT+AGG | 0.544038 | 8_1:+78096865 | None:intergenic |
| CGCACAACTGCCGGAAGCGA+CGG | 0.544706 | 8_1:+78098179 | None:intergenic |
| CAGAGTGCCCAAGGAGCTCA+GGG | 0.552081 | 8_1:-78095202 | Msa1216380:CDS |
| TGTGTTCATTGTGGTTGCAA+GGG | 0.552779 | 8_1:-78095162 | Msa1216380:CDS |
| TTGCAAGGGTTGTGCAAGTG+GGG | 0.556074 | 8_1:-78095148 | Msa1216380:CDS |
| TGAACTCTACCATAAGAGAA+AGG | 0.559158 | 8_1:-78096640 | Msa1216380:CDS |
| AAGAATGAGAAGACAAGTAG+TGG | 0.559866 | 8_1:+78098225 | None:intergenic |
| AGTTAAATACCCAGAAGGCT+GGG | 0.561161 | 8_1:-78096899 | Msa1216380:CDS |
| CCTCAATTATATTAATCTGG+AGG | 0.565832 | 8_1:-78095115 | Msa1216380:three_prime_UTR |
| CTTCAAGGAAAGATGAGGGA+AGG | 0.566524 | 8_1:-78096850 | Msa1216380:intron |
| GTGGTTGGTCGCACAACTGC+CGG | 0.567423 | 8_1:+78098170 | None:intergenic |
| TTGTGTATGCAGAGTGCCCA+AGG | 0.571684 | 8_1:-78095211 | Msa1216380:CDS |
| GTTATAGAGTGTGTTCATTG+TGG | 0.573951 | 8_1:-78095171 | Msa1216380:CDS |
| ATTCTTCTTCTCGGTTGTCG+AGG | 0.580297 | 8_1:-78098208 | Msa1216380:five_prime_UTR |
| GTGAACTTCAAGGAAAGATG+AGG | 0.592845 | 8_1:-78096855 | Msa1216380:CDS |
| CAATAAGCAAAGGTGAGCGG+TGG | 0.595728 | 8_1:+78098147 | None:intergenic |
| CACTCTGCATACACAAGTGG+TGG | 0.609114 | 8_1:+78095218 | None:intergenic |
| CAGTAGTGATACAACGTAGA+GGG | 0.615913 | 8_1:+78095057 | None:intergenic |
| AATAAGCAAAGGTGAGCGGT+GGG | 0.617144 | 8_1:+78098148 | None:intergenic |
| GCTGAGAATGACCCACATGA+TGG | 0.619377 | 8_1:-78096729 | Msa1216380:CDS |
| AAGCAAAGGTGAGCGGTGGG+TGG | 0.625169 | 8_1:+78098151 | None:intergenic |
| TGAACTTCAAGGAAAGATGA+GGG | 0.638807 | 8_1:-78096854 | Msa1216380:CDS |
| ATGAACGCCTATGTTGCTTG+AGG | 0.642564 | 8_1:-78095269 | Msa1216380:CDS |
| GGGCACTCTGCATACACAAG+TGG | 0.642607 | 8_1:+78095215 | None:intergenic |
| ACAATTAATAATAATACACA+GGG | 0.644248 | 8_1:+78094897 | None:intergenic |
| AGCCGAGTTAAATACCCAGA+AGG | 0.645736 | 8_1:-78096904 | Msa1216380:CDS |
| TTGTATTGACTATTGAGCGA+AGG | 0.655791 | 8_1:+78094861 | None:intergenic |
| CGACAATAAGCAAAGGTGAG+CGG | 0.662024 | 8_1:+78098144 | None:intergenic |
| AATTAATAATAATACACAGG+GGG | 0.674576 | 8_1:+78094899 | None:intergenic |
| GTGGCGAAATTGTGATCGCG+TGG | 0.685360 | 8_1:+78095237 | None:intergenic |
| CCTCAGACGACAATAAGCAA+AGG | 0.685637 | 8_1:+78098137 | None:intergenic |
| ACAGTAGTGATACAACGTAG+AGG | 0.690605 | 8_1:+78095056 | None:intergenic |
| AGTGCCCAAGGAGCTCAGGG+AGG | 0.692740 | 8_1:-78095199 | Msa1216380:CDS |
| GGTAGAGTTCAAATACATAG+CGG | 0.738599 | 8_1:+78096652 | None:intergenic |
| CAATTAATAATAATACACAG+GGG | 0.787794 | 8_1:+78094898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATATATTCCTATA+TGG | + | chr8_1:78097434-78097453 | None:intergenic | 10.0% |
| !! | TTCAAATTATTCAAGAAATT+TGG | + | chr8_1:78095201-78095220 | None:intergenic | 15.0% |
| !! | TTAACACATAAAAACAATTA+GGG | + | chr8_1:78095517-78095536 | None:intergenic | 15.0% |
| !! | ATTAACACATAAAAACAATT+AGG | + | chr8_1:78095518-78095537 | None:intergenic | 15.0% |
| !!! | TAAATAACTACTTTTGTAAA+TGG | - | chr8_1:78095547-78095566 | Msa1216380:intron | 15.0% |
| !! | AAATGAAAATATGACATATA+AGG | + | chr8_1:78096177-78096196 | None:intergenic | 15.0% |
| !! | ACAATTAATAATAATACACA+GGG | + | chr8_1:78098236-78098255 | None:intergenic | 15.0% |
| !! | AACAATTAATAATAATACAC+AGG | + | chr8_1:78098237-78098256 | None:intergenic | 15.0% |
| !!! | CTGTTCTTCAATATTTTTTA+GGG | - | chr8_1:78095029-78095048 | Msa1216380:three_prime_UTR | 20.0% |
| !! | AAGCTTAATTAAAATCACTT+AGG | + | chr8_1:78095059-78095078 | None:intergenic | 20.0% |
| !! | TCTTATCAATTGTATATACT+TGG | + | chr8_1:78095950-78095969 | None:intergenic | 20.0% |
| !! | TAACATAAATGGAACTTTAA+AGG | + | chr8_1:78096129-78096148 | None:intergenic | 20.0% |
| !! | ATATTGTTATATCCTTTATG+TGG | - | chr8_1:78096376-78096395 | Msa1216380:intron | 20.0% |
| !! | AAAACCATTTAAAAACCAAA+AGG | + | chr8_1:78097125-78097144 | None:intergenic | 20.0% |
| !! | AATTAATAATAATACACAGG+GGG | + | chr8_1:78098234-78098253 | None:intergenic | 20.0% |
| !! | CAATTAATAATAATACACAG+GGG | + | chr8_1:78098235-78098254 | None:intergenic | 20.0% |
| ! | CCTAAAAAATATTGAAGAAC+AGG | + | chr8_1:78095031-78095050 | None:intergenic | 25.0% |
| !!! | CCTGTTCTTCAATATTTTTT+AGG | - | chr8_1:78095028-78095047 | Msa1216380:three_prime_UTR | 25.0% |
| !! | GTTTAAAACGTAAAGAGAAA+AGG | + | chr8_1:78095094-78095113 | None:intergenic | 25.0% |
| !! | TTTACGATGCTTATTTCTTA+AGG | - | chr8_1:78095143-78095162 | Msa1216380:CDS | 25.0% |
| ! | ATTCAAGAAATTTGGATACA+CGG | + | chr8_1:78095193-78095212 | None:intergenic | 25.0% |
| ! | AAACCCTTAGTTTATAATGT+TGG | + | chr8_1:78095295-78095314 | None:intergenic | 25.0% |
| !! | TTATAAACTAAGGGTTTGTT+TGG | - | chr8_1:78095298-78095317 | Msa1216380:intron | 25.0% |
| !! | TATAAACTAAGGGTTTGTTT+GGG | - | chr8_1:78095299-78095318 | Msa1216380:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr8_1:78095442-78095461 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | chr8_1:78095490-78095509 | Msa1216380:intron | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr8_1:78095491-78095510 | Msa1216380:intron | 25.0% |
| !! | TTTTATCCAATAATACCAGT+TGG | + | chr8_1:78095850-78095869 | None:intergenic | 25.0% |
| ! | ACTGGTATTATTGGATAAAA+TGG | - | chr8_1:78095850-78095869 | Msa1216380:intron | 25.0% |
| ! | CTGGTATTATTGGATAAAAT+GGG | - | chr8_1:78095851-78095870 | Msa1216380:intron | 25.0% |
| ! | TGGTATTATTGGATAAAATG+GGG | - | chr8_1:78095852-78095871 | Msa1216380:intron | 25.0% |
| ! | TCTATTCTACTTATGTTAAG+AGG | + | chr8_1:78096081-78096100 | None:intergenic | 25.0% |
| ! | ATTCTAGCAAGTAACATAAA+TGG | + | chr8_1:78096140-78096159 | None:intergenic | 25.0% |
| ! | GAATGAAAAAGAATACAGTA+AGG | + | chr8_1:78096332-78096351 | None:intergenic | 25.0% |
| !! | TGGTGTGCAATTTTAAATAT+AGG | + | chr8_1:78096452-78096471 | None:intergenic | 25.0% |
| ! | TAGAAATTTCCTTTCTCTTA+TGG | + | chr8_1:78096502-78096521 | None:intergenic | 25.0% |
| ! | TATGAATTCTGTTTAGATCA+AGG | - | chr8_1:78096530-78096549 | Msa1216380:intron | 25.0% |
| ! | GGAAAGTAAATTTCATTTGA+CGG | - | chr8_1:78096642-78096661 | Msa1216380:CDS | 25.0% |
| ! | GAAAGTAAATTTCATTTGAC+GGG | - | chr8_1:78096643-78096662 | Msa1216380:CDS | 25.0% |
| ! | AACAAGGTGATTAGAATTTA+AGG | + | chr8_1:78096840-78096859 | None:intergenic | 25.0% |
| !! | TAACATTCCTGTCATTTATA+CGG | + | chr8_1:78096999-78097018 | None:intergenic | 25.0% |
| ! | TTCAAGAGACATAATAAACT+CGG | - | chr8_1:78097204-78097223 | Msa1216380:intron | 25.0% |
| ! | TCATTCATTGAATATTCATC+TGG | + | chr8_1:78097333-78097352 | None:intergenic | 25.0% |
| ! | TATTCAATGAATGAACCAAA+TGG | - | chr8_1:78097339-78097358 | Msa1216380:intron | 25.0% |
| !! | TTCACTATTAAACAAGTTGA+AGG | + | chr8_1:78097380-78097399 | None:intergenic | 25.0% |
| !! | TCAACTTGTTTAATAGTGAA+TGG | - | chr8_1:78097380-78097399 | Msa1216380:intron | 25.0% |
| ! | TTTAATAGTGAATGGTTGTT+TGG | - | chr8_1:78097388-78097407 | Msa1216380:intron | 25.0% |
| ! | CAAACAATTACTTTAGCAAA+GGG | + | chr8_1:78097468-78097487 | None:intergenic | 25.0% |
| ! | TCAAACAATTACTTTAGCAA+AGG | + | chr8_1:78097469-78097488 | None:intergenic | 25.0% |
| ! | ACTAAATCTACTCTTACAAT+TGG | - | chr8_1:78097555-78097574 | Msa1216380:intron | 25.0% |
| !!! | AGACAATATTTTTTTCCTAG+AGG | - | chr8_1:78097616-78097635 | Msa1216380:intron | 25.0% |
| ! | ATTAACTGAAGACAATGAAA+AGG | + | chr8_1:78097718-78097737 | None:intergenic | 25.0% |
| ! | ACCGTTGAAAATGAAATATA+TGG | - | chr8_1:78097761-78097780 | Msa1216380:intron | 25.0% |
| !! | GCCATATATTTCATTTTCAA+CGG | + | chr8_1:78097765-78097784 | None:intergenic | 25.0% |
| ! | CTCAATTATATTAATCTGGA+GGG | - | chr8_1:78098016-78098035 | Msa1216380:intron | 25.0% |
| TTATCGTATAAGTTACTCAC+TGG | - | chr8_1:78094876-78094895 | Msa1216380:three_prime_UTR | 30.0% | |
| AAAATATTGAAGAACAGGCA+GGG | + | chr8_1:78095026-78095045 | None:intergenic | 30.0% | |
| AAAAATATTGAAGAACAGGC+AGG | + | chr8_1:78095027-78095046 | None:intergenic | 30.0% | |
| TTTAATTAAGCTTATGCTCG+TGG | - | chr8_1:78095066-78095085 | Msa1216380:three_prime_UTR | 30.0% | |
| ! | GGTTTTTGAATCATCAACAA+TGG | - | chr8_1:78095164-78095183 | Msa1216380:CDS | 30.0% |
| TTTCTTATGATGTCATGTTG+TGG | - | chr8_1:78095239-78095258 | Msa1216380:CDS | 30.0% | |
| TGTGCCAACATTATAAACTA+AGG | - | chr8_1:78095288-78095307 | Msa1216380:intron | 30.0% | |
| GTGCCAACATTATAAACTAA+GGG | - | chr8_1:78095289-78095308 | Msa1216380:intron | 30.0% | |
| !!! | ACTTGATAGCTAGCTTTTAA+GGG | + | chr8_1:78095617-78095636 | None:intergenic | 30.0% |
| AGAATTTACAGTAAAACACC+TGG | - | chr8_1:78095883-78095902 | Msa1216380:intron | 30.0% | |
| AGTTAGGTTAAGTTAGTTAG+CGG | + | chr8_1:78096028-78096047 | None:intergenic | 30.0% | |
| TTAGTTAAGAAGAGTTCACT+TGG | + | chr8_1:78096053-78096072 | None:intergenic | 30.0% | |
| CAAGCTATGAAGTTGTTTAT+AGG | + | chr8_1:78096104-78096123 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTTGCCATCATGT+GGG | + | chr8_1:78096415-78096434 | None:intergenic | 30.0% |
| AAAGAAAATGTGAGACTTTG+TGG | - | chr8_1:78096426-78096445 | Msa1216380:intron | 30.0% | |
| AGAAGTGAGAAATCTATATC+TGG | - | chr8_1:78096689-78096708 | Msa1216380:CDS | 30.0% | |
| GAAGTGAGAAATCTATATCT+GGG | - | chr8_1:78096690-78096709 | Msa1216380:CDS | 30.0% | |
| GTAAAGTAACCTTAAGCATA+TGG | - | chr8_1:78096764-78096783 | Msa1216380:intron | 30.0% | |
| ! | TATGGTTTGTAGCAAAAACA+AGG | + | chr8_1:78096856-78096875 | None:intergenic | 30.0% |
| CAATTTATTCTTGCACTATG+AGG | + | chr8_1:78096955-78096974 | None:intergenic | 30.0% | |
| GTATAAATGACAGGAATGTT+AGG | - | chr8_1:78096998-78097017 | Msa1216380:intron | 30.0% | |
| AATGATCAAGTCCTTTACTT+TGG | + | chr8_1:78097096-78097115 | None:intergenic | 30.0% | |
| ! | TTGATCATTTAGTGACCTTT+TGG | - | chr8_1:78097107-78097126 | Msa1216380:intron | 30.0% |
| !!! | GTGACCTTTTGGTTTTTAAA+TGG | - | chr8_1:78097118-78097137 | Msa1216380:intron | 30.0% |
| ! | GAACAATTTATTTGAGACCT+TGG | + | chr8_1:78097187-78097206 | None:intergenic | 30.0% |
| !! | TTTGGTGTATGTCTTAGTTT+TGG | - | chr8_1:78097406-78097425 | Msa1216380:intron | 30.0% |
| !!! | TTTTTTTCCTAGAGGTTACA+AGG | - | chr8_1:78097624-78097643 | Msa1216380:intron | 30.0% |
| GGACCTCAATTATATTAATC+TGG | - | chr8_1:78098012-78098031 | Msa1216380:intron | 30.0% | |
| CCTCCAGATTAATATAATTG+AGG | + | chr8_1:78098018-78098037 | None:intergenic | 30.0% | |
| CCTCAATTATATTAATCTGG+AGG | - | chr8_1:78098015-78098034 | Msa1216380:intron | 30.0% | |
| AATGTTACAAAACTCAAGTC+AGG | + | chr8_1:78098173-78098192 | None:intergenic | 30.0% | |
| !! | GACTTGAGTTTTGTAACATT+TGG | - | chr8_1:78098173-78098192 | Msa1216380:five_prime_UTR | 30.0% |
| AAGAATGAGAAGACAAGTAG+TGG | + | chr8_1:78094908-78094927 | None:intergenic | 35.0% | |
| TGTCTTCTCATTCTTCTTCT+CGG | - | chr8_1:78094913-78094932 | Msa1216380:three_prime_UTR | 35.0% | |
| !!! | GACTTGATAGCTAGCTTTTA+AGG | + | chr8_1:78095618-78095637 | None:intergenic | 35.0% |
| TCGAAACCAACTGGTATTAT+TGG | - | chr8_1:78095841-78095860 | Msa1216380:intron | 35.0% | |
| ! | TGTATATACTTGGAGCCTTT+TGG | + | chr8_1:78095940-78095959 | None:intergenic | 35.0% |
| CATGTTGCCTATAGATAAGA+GGG | + | chr8_1:78095991-78096010 | None:intergenic | 35.0% | |
| ACATGTTGCCTATAGATAAG+AGG | + | chr8_1:78095992-78096011 | None:intergenic | 35.0% | |
| AAGAGTTCACTTGGTAAGTT+AGG | + | chr8_1:78096044-78096063 | None:intergenic | 35.0% | |
| TGAACTTCAAGGAAAGATGA+GGG | - | chr8_1:78096276-78096295 | Msa1216380:intron | 35.0% | |
| ! | CATTTTCTTTTGCCATCATG+TGG | + | chr8_1:78096416-78096435 | None:intergenic | 35.0% |
| GGTAGAGTTCAAATACATAG+CGG | + | chr8_1:78096481-78096500 | None:intergenic | 35.0% | |
| TGAACTCTACCATAAGAGAA+AGG | - | chr8_1:78096490-78096509 | Msa1216380:intron | 35.0% | |
| !! | TCCATTTTGCAATTAGGTTG+CGG | + | chr8_1:78096565-78096584 | None:intergenic | 35.0% |
| ! | CCTTCTTCCATTTTGCAATT+AGG | + | chr8_1:78096571-78096590 | None:intergenic | 35.0% |
| CCTAATTGCAAAATGGAAGA+AGG | - | chr8_1:78096568-78096587 | Msa1216380:CDS | 35.0% | |
| GAGATAGAATAAGTACGATC+AGG | - | chr8_1:78096665-78096684 | Msa1216380:CDS | 35.0% | |
| ! | GCTTAAGGTTACTTTACCTA+GGG | + | chr8_1:78096761-78096780 | None:intergenic | 35.0% |
| ! | TGCTTAAGGTTACTTTACCT+AGG | + | chr8_1:78096762-78096781 | None:intergenic | 35.0% |
| GAGACATATCCATATGCTTA+AGG | + | chr8_1:78096776-78096795 | None:intergenic | 35.0% | |
| !!! | CCTTCTCGAGCAATTTTTTA+TGG | + | chr8_1:78096874-78096893 | None:intergenic | 35.0% |
| CCATAAAAAATTGCTCGAGA+AGG | - | chr8_1:78096871-78096890 | Msa1216380:CDS | 35.0% | |
| GAGTAAACTCTCCAAAGTAA+AGG | - | chr8_1:78097082-78097101 | Msa1216380:intron | 35.0% | |
| TAAAGTTATGCCTGTGAGTA+AGG | - | chr8_1:78097159-78097178 | Msa1216380:intron | 35.0% | |
| AGTGAACTACAATCAGCTTT+AGG | + | chr8_1:78097236-78097255 | None:intergenic | 35.0% | |
| TAAAGCTGATTGTAGTTCAC+TGG | - | chr8_1:78097235-78097254 | Msa1216380:intron | 35.0% | |
| !!! | TCTTAGTTTTGGCTCCATAT+AGG | - | chr8_1:78097417-78097436 | Msa1216380:intron | 35.0% |
| CATCGTAGTTGCTATCTATA+AGG | - | chr8_1:78097511-78097530 | Msa1216380:intron | 35.0% | |
| GCAGTAAACAACAGTGATAT+TGG | + | chr8_1:78097696-78097715 | None:intergenic | 35.0% | |
| GTTATAGAGTGTGTTCATTG+TGG | - | chr8_1:78097959-78097978 | Msa1216380:intron | 35.0% | |
| TATTAATCTGGAGGGTTTGT+TGG | - | chr8_1:78098024-78098043 | Msa1216380:intron | 35.0% | |
| !!! | AAGTCAGGTTTTGAACTATG+CGG | + | chr8_1:78098158-78098177 | None:intergenic | 35.0% |
| !! | TTGTATTGACTATTGAGCGA+AGG | + | chr8_1:78098272-78098291 | None:intergenic | 35.0% |
| CTTTGCTTATTGTCGTCTGA+GGG | - | chr8_1:78094994-78095013 | Msa1216380:three_prime_UTR | 40.0% | |
| CTTATGATGTCATGTTGTGG+TGG | - | chr8_1:78095242-78095261 | Msa1216380:CDS | 40.0% | |
| ! | AACTAAGGGTTTGTTTGGGT+TGG | - | chr8_1:78095303-78095322 | Msa1216380:intron | 40.0% |
| AAAAACAATTAGGGCCCGTT+TGG | + | chr8_1:78095508-78095527 | None:intergenic | 40.0% | |
| !!! | GATAGCTAGCTTTTAAGGGA+GGG | + | chr8_1:78095613-78095632 | None:intergenic | 40.0% |
| !!! | TGATAGCTAGCTTTTAAGGG+AGG | + | chr8_1:78095614-78095633 | None:intergenic | 40.0% |
| AATTCCACATCAGGCAGTAT+GGG | + | chr8_1:78095664-78095683 | None:intergenic | 40.0% | |
| AAATTCCACATCAGGCAGTA+TGG | + | chr8_1:78095665-78095684 | None:intergenic | 40.0% | |
| TAGAGTCTCTCTAATACTCC+AGG | + | chr8_1:78095904-78095923 | None:intergenic | 40.0% | |
| GATAAGATAGCTCACTCTCT+AGG | - | chr8_1:78095963-78095982 | Msa1216380:intron | 40.0% | |
| ! | ACTCGGCTTGTCTTTACTTT+CGG | + | chr8_1:78096214-78096233 | None:intergenic | 40.0% |
| AGCCTTCTGGGTATTTAACT+CGG | + | chr8_1:78096231-78096250 | None:intergenic | 40.0% | |
| AGTTAAATACCCAGAAGGCT+GGG | - | chr8_1:78096231-78096250 | Msa1216380:intron | 40.0% | |
| CAATTAATTCCCAGCCTTCT+GGG | + | chr8_1:78096243-78096262 | None:intergenic | 40.0% | |
| TCAATTAATTCCCAGCCTTC+TGG | + | chr8_1:78096244-78096263 | None:intergenic | 40.0% | |
| GTGAACTTCAAGGAAAGATG+AGG | - | chr8_1:78096275-78096294 | Msa1216380:intron | 40.0% | |
| ACCGCAACCTAATTGCAAAA+TGG | - | chr8_1:78096561-78096580 | Msa1216380:intron | 40.0% | |
| GTTACACTTTCCTACTCTTG+TGG | + | chr8_1:78096739-78096758 | None:intergenic | 40.0% | |
| CAGTAGGACTGCAAATGATA+CGG | - | chr8_1:78096810-78096829 | Msa1216380:intron | 40.0% | |
| AGTAGGACTGCAAATGATAC+GGG | - | chr8_1:78096811-78096830 | Msa1216380:intron | 40.0% | |
| GCTCTCTGATCATCCTAAAA+AGG | - | chr8_1:78096907-78096926 | Msa1216380:CDS | 40.0% | |
| TCCTAAAAAGGTCATTTCGC+AGG | - | chr8_1:78096919-78096938 | Msa1216380:CDS | 40.0% | |
| CCTAAAAAGGTCATTTCGCA+GGG | - | chr8_1:78096920-78096939 | Msa1216380:CDS | 40.0% | |
| GCTAGATCCGTATAAATGAC+AGG | - | chr8_1:78096989-78097008 | Msa1216380:intron | 40.0% | |
| GACAGGAATGTTAGGAGAAA+TGG | - | chr8_1:78097006-78097025 | Msa1216380:intron | 40.0% | |
| AGGAATGTTAGGAGAAATGG+TGG | - | chr8_1:78097009-78097028 | Msa1216380:intron | 40.0% | |
| TTAGGAGAAATGGTGGTAGA+AGG | - | chr8_1:78097016-78097035 | Msa1216380:intron | 40.0% | |
| ! | CTGATTGTAGTTCACTGGTT+TGG | - | chr8_1:78097240-78097259 | Msa1216380:intron | 40.0% |
| TTACCAAGATTCACGCCATT+TGG | + | chr8_1:78097357-78097376 | None:intergenic | 40.0% | |
| ACAACAACCTTGTAACCTCT+AGG | + | chr8_1:78097634-78097653 | None:intergenic | 40.0% | |
| !! | TTTGTTTCTGAATTGCAGCC+TGG | - | chr8_1:78097836-78097855 | Msa1216380:intron | 40.0% |
| TGTGTTCATTGTGGTTGCAA+GGG | - | chr8_1:78097968-78097987 | Msa1216380:intron | 40.0% | |
| CAGTAGTGATACAACGTAGA+GGG | + | chr8_1:78098076-78098095 | None:intergenic | 40.0% | |
| ACAGTAGTGATACAACGTAG+AGG | + | chr8_1:78098077-78098096 | None:intergenic | 40.0% | |
| ACTTCACAAGAGCTATGCAT+TGG | - | chr8_1:78098104-78098123 | Msa1216380:intron | 40.0% | |
| CTTCACAAGAGCTATGCATT+GGG | - | chr8_1:78098105-78098124 | Msa1216380:intron | 40.0% | |
| ATTCTTCTTCTCGGTTGTCG+AGG | - | chr8_1:78094922-78094941 | Msa1216380:three_prime_UTR | 45.0% | |
| AATAAGCAAAGGTGAGCGGT+GGG | + | chr8_1:78094985-78095004 | None:intergenic | 45.0% | |
| CGACAATAAGCAAAGGTGAG+CGG | + | chr8_1:78094989-78095008 | None:intergenic | 45.0% | |
| CCTCAGACGACAATAAGCAA+AGG | + | chr8_1:78094996-78095015 | None:intergenic | 45.0% | |
| CCTTTGCTTATTGTCGTCTG+AGG | - | chr8_1:78094993-78095012 | Msa1216380:three_prime_UTR | 45.0% | |
| !! | AGGGAGGGTACTTATCAACT+TGG | + | chr8_1:78095598-78095617 | None:intergenic | 45.0% |
| TCACTCTACAACGCTGTACT+TGG | - | chr8_1:78095749-78095768 | Msa1216380:intron | 45.0% | |
| TCCAGTTGATCGAAACCAAC+TGG | - | chr8_1:78095832-78095851 | Msa1216380:intron | 45.0% | |
| ! | ACCAGTTGGTTTCGATCAAC+TGG | + | chr8_1:78095836-78095855 | None:intergenic | 45.0% |
| TAGACTCTCCCAATGCCAAA+AGG | - | chr8_1:78095922-78095941 | Msa1216380:intron | 45.0% | |
| ! | ACTTGGAGCCTTTTGGCATT+GGG | + | chr8_1:78095933-78095952 | None:intergenic | 45.0% |
| ! | TACTTGGAGCCTTTTGGCAT+TGG | + | chr8_1:78095934-78095953 | None:intergenic | 45.0% |
| CTAGGCTCCCTCTTATCTAT+AGG | - | chr8_1:78095981-78096000 | Msa1216380:intron | 45.0% | |
| AGCCGAGTTAAATACCCAGA+AGG | - | chr8_1:78096226-78096245 | Msa1216380:intron | 45.0% | |
| GAGTTAAATACCCAGAAGGC+TGG | - | chr8_1:78096230-78096249 | Msa1216380:intron | 45.0% | |
| CCTTGAAGTTCACGAAGTGT+AGG | + | chr8_1:78096268-78096287 | None:intergenic | 45.0% | |
| CCTACACTTCGTGAACTTCA+AGG | - | chr8_1:78096265-78096284 | Msa1216380:intron | 45.0% | |
| CTTCAAGGAAAGATGAGGGA+AGG | - | chr8_1:78096280-78096299 | Msa1216380:intron | 45.0% | |
| CATTCTCAGCTGCCACATAA+AGG | + | chr8_1:78096391-78096410 | None:intergenic | 45.0% | |
| CAAATACATAGCGGCTCTTC+TGG | + | chr8_1:78096472-78096491 | None:intergenic | 45.0% | |
| TGGTGGTAAAAGGCAAGTGT+TGG | + | chr8_1:78096719-78096738 | None:intergenic | 45.0% | |
| CCTACTCTTGTGGTGGTAAA+AGG | + | chr8_1:78096729-78096748 | None:intergenic | 45.0% | |
| ! | CCTTTTACCACCACAAGAGT+AGG | - | chr8_1:78096726-78096745 | Msa1216380:CDS | 45.0% |
| ACACTTTCCTACTCTTGTGG+TGG | + | chr8_1:78096736-78096755 | None:intergenic | 45.0% | |
| ! | GAGTAGGAAAGTGTAACCCT+AGG | - | chr8_1:78096742-78096761 | Msa1216380:intron | 45.0% |
| TCTCCTACCACATACACAGT+AGG | - | chr8_1:78096794-78096813 | Msa1216380:intron | 45.0% | |
| AGTCCTACTGTGTATGTGGT+AGG | + | chr8_1:78096800-78096819 | None:intergenic | 45.0% | |
| TTGCAGTCCTACTGTGTATG+TGG | + | chr8_1:78096804-78096823 | None:intergenic | 45.0% | |
| ! | CCCTGCGAAATGACCTTTTT+AGG | + | chr8_1:78096923-78096942 | None:intergenic | 45.0% |
| GGATCTAGCTAACAAGCATC+AGG | + | chr8_1:78096978-78096997 | None:intergenic | 45.0% | |
| TTCTGTCTGTGGGCAAATTG+TGG | + | chr8_1:78097300-78097319 | None:intergenic | 45.0% | |
| TGCCCACAGACAGAATTCTA+AGG | - | chr8_1:78097305-78097324 | Msa1216380:intron | 45.0% | |
| GCCCACAGACAGAATTCTAA+GGG | - | chr8_1:78097306-78097325 | Msa1216380:intron | 45.0% | |
| CCCCTTAGAATTCTGTCTGT+GGG | + | chr8_1:78097310-78097329 | None:intergenic | 45.0% | |
| CCCACAGACAGAATTCTAAG+GGG | - | chr8_1:78097307-78097326 | Msa1216380:intron | 45.0% | |
| GAACCAAATGGCGTGAATCT+TGG | - | chr8_1:78097351-78097370 | Msa1216380:intron | 45.0% | |
| CAACATAGGCGTTCATAACC+AGG | + | chr8_1:78097857-78097876 | None:intergenic | 45.0% | |
| ! | ATGAACGCCTATGTTGCTTG+AGG | - | chr8_1:78097861-78097880 | Msa1216380:intron | 45.0% |
| GTATGCACCTCAAGCAACAT+AGG | + | chr8_1:78097871-78097890 | None:intergenic | 45.0% | |
| GTGTGTTCATTGTGGTTGCA+AGG | - | chr8_1:78097967-78097986 | Msa1216380:intron | 45.0% | |
| TTGTGCAAGTGGGGATTGAT+TGG | - | chr8_1:78097991-78098010 | Msa1216380:intron | 45.0% | |
| !!! | TTATTTTGTTTTTTTTTTAT+AGG | - | chr8_1:78096621-78096640 | Msa1216380:CDS | 5.0% |
| CAATAAGCAAAGGTGAGCGG+TGG | + | chr8_1:78094986-78095005 | None:intergenic | 50.0% | |
| ! | TGCTCAATGGAGTGTCTGAG+TGG | + | chr8_1:78095640-78095659 | None:intergenic | 50.0% |
| AGGCAGTATGGGATGCTCAA+TGG | + | chr8_1:78095653-78095672 | None:intergenic | 50.0% | |
| GTGCACGCAAATTCCACATC+AGG | + | chr8_1:78095673-78095692 | None:intergenic | 50.0% | |
| !! | TCATGGACGGTGCTACAGTA+GGG | + | chr8_1:78095709-78095728 | None:intergenic | 50.0% |
| ! | AACGCTGTACTTGGCCTTTC+TGG | - | chr8_1:78095758-78095777 | Msa1216380:intron | 50.0% |
| GAATCAGAGCTGGTTGTTGG+TGG | + | chr8_1:78095814-78095833 | None:intergenic | 50.0% | |
| CTGGAATCAGAGCTGGTTGT+TGG | + | chr8_1:78095817-78095836 | None:intergenic | 50.0% | |
| CGATCAACTGGAATCAGAGC+TGG | + | chr8_1:78095824-78095843 | None:intergenic | 50.0% | |
| GCTGAGAATGACCCACATGA+TGG | - | chr8_1:78096401-78096420 | Msa1216380:intron | 50.0% | |
| !! | TAGGATGATCAGAGAGCACC+AGG | + | chr8_1:78096904-78096923 | None:intergenic | 50.0% |
| GCCCCTTAGAATTCTGTCTG+TGG | + | chr8_1:78097311-78097330 | None:intergenic | 50.0% | |
| CACTCTGCATACACAAGTGG+TGG | + | chr8_1:78097915-78097934 | None:intergenic | 50.0% | |
| ! | TTGTGTATGCAGAGTGCCCA+AGG | - | chr8_1:78097919-78097938 | Msa1216380:intron | 50.0% |
| GTTGCAAGGGTTGTGCAAGT+GGG | - | chr8_1:78097981-78098000 | Msa1216380:intron | 50.0% | |
| TTGCAAGGGTTGTGCAAGTG+GGG | - | chr8_1:78097982-78098001 | Msa1216380:intron | 50.0% | |
| GAGGTAAACTCCGTCGCTTC+CGG | - | chr8_1:78094941-78094960 | Msa1216380:three_prime_UTR | 55.0% | |
| GCATCCCATACTGCCTGATG+TGG | - | chr8_1:78095657-78095676 | Msa1216380:intron | 55.0% | |
| !! | CGGTGCTACAGTAGGGGTTT+GGG | + | chr8_1:78095702-78095721 | None:intergenic | 55.0% |
| !! | ACGGTGCTACAGTAGGGGTT+TGG | + | chr8_1:78095703-78095722 | None:intergenic | 55.0% |
| !! | CATGGACGGTGCTACAGTAG+GGG | + | chr8_1:78095708-78095727 | None:intergenic | 55.0% |
| !! | CTCATGGACGGTGCTACAGT+AGG | + | chr8_1:78095710-78095729 | None:intergenic | 55.0% |
| CGCAAGTCAGCTCTCATGGA+CGG | + | chr8_1:78095722-78095741 | None:intergenic | 55.0% | |
| !! | CGTCCATGAGAGCTGACTTG+CGG | - | chr8_1:78095720-78095739 | Msa1216380:intron | 55.0% |
| TGTCCGCAAGTCAGCTCTCA+TGG | + | chr8_1:78095726-78095745 | None:intergenic | 55.0% | |
| TACGGAGGAGCTGACCAGAA+AGG | + | chr8_1:78095775-78095794 | None:intergenic | 55.0% | |
| ! | TTTCTGGTCAGCTCCTCCGT+AGG | - | chr8_1:78095774-78095793 | Msa1216380:intron | 55.0% |
| !! | GGTTGTTGGTGGCTCGGAAA+GGG | + | chr8_1:78095803-78095822 | None:intergenic | 55.0% |
| !! | TGGTTGTTGGTGGCTCGGAA+AGG | + | chr8_1:78095804-78095823 | None:intergenic | 55.0% |
| !! | AGAGCTGGTTGTTGGTGGCT+CGG | + | chr8_1:78095809-78095828 | None:intergenic | 55.0% |
| ! | GCTCGAGAAGGTATAGCACC+TGG | - | chr8_1:78096883-78096902 | Msa1216380:CDS | 55.0% |
| TGCCTGTGAGTAAGGAGCCA+AGG | - | chr8_1:78097167-78097186 | Msa1216380:intron | 55.0% | |
| GACCTTGGCTCCTTACTCAC+AGG | + | chr8_1:78097172-78097191 | None:intergenic | 55.0% | |
| GTGGCGAAATTGTGATCGCG+TGG | + | chr8_1:78097896-78097915 | None:intergenic | 55.0% | |
| GGGCACTCTGCATACACAAG+TGG | + | chr8_1:78097918-78097937 | None:intergenic | 55.0% | |
| TTCTCCTCCCTGAGCTCCTT+GGG | + | chr8_1:78097938-78097957 | None:intergenic | 55.0% | |
| GGTTGCAAGGGTTGTGCAAG+TGG | - | chr8_1:78097980-78097999 | Msa1216380:intron | 55.0% | |
| ! | GTGGTTGGTCGCACAACTGC+CGG | + | chr8_1:78094963-78094982 | None:intergenic | 60.0% |
| AAAGGTGAGCGGTGGGTGGT+TGG | + | chr8_1:78094978-78094997 | None:intergenic | 60.0% | |
| AAGCAAAGGTGAGCGGTGGG+TGG | + | chr8_1:78094982-78095001 | None:intergenic | 60.0% | |
| TCGGAAAGGGCTACCTACGG+AGG | + | chr8_1:78095790-78095809 | None:intergenic | 60.0% | |
| GGCTCGGAAAGGGCTACCTA+CGG | + | chr8_1:78095793-78095812 | None:intergenic | 60.0% | |
| ! | CAGAGTGCCCAAGGAGCTCA+GGG | - | chr8_1:78097928-78097947 | Msa1216380:intron | 60.0% |
| CTTCTCCTCCCTGAGCTCCT+TGG | + | chr8_1:78097939-78097958 | None:intergenic | 60.0% | |
| CAAGGAGCTCAGGGAGGAGA+AGG | - | chr8_1:78097937-78097956 | Msa1216380:intron | 60.0% | |
| CGCACAACTGCCGGAAGCGA+CGG | + | chr8_1:78094954-78094973 | None:intergenic | 65.0% | |
| ! | GCAGAGTGCCCAAGGAGCTC+AGG | - | chr8_1:78097927-78097946 | Msa1216380:intron | 65.0% |
| AGTGCCCAAGGAGCTCAGGG+AGG | - | chr8_1:78097931-78097950 | Msa1216380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 78094835 | 78098317 | 78094835 | ID=Msa1216380;Name=Msa1216380 |
| chr8_1 | mRNA | 78094835 | 78098317 | 78094835 | ID=Msa1216380-mRNA-1;Parent=Msa1216380;Name=Msa1216380-mRNA-1;_AED=0.08;_eAED=0.08;_QI=187|1|1|1|0.66|0.75|4|308|145 |
| chr8_1 | exon | 78094835 | 78095298 | 78094835 | ID=Msa1216380-mRNA-1:exon:27012;Parent=Msa1216380-mRNA-1 |
| chr8_1 | exon | 78096563 | 78096750 | 78096563 | ID=Msa1216380-mRNA-1:exon:27011;Parent=Msa1216380-mRNA-1 |
| chr8_1 | exon | 78096851 | 78096950 | 78096851 | ID=Msa1216380-mRNA-1:exon:27010;Parent=Msa1216380-mRNA-1 |
| chr8_1 | exon | 78098137 | 78098317 | 78098137 | ID=Msa1216380-mRNA-1:exon:27009;Parent=Msa1216380-mRNA-1 |
| chr8_1 | five_prime_UTR | 78098137 | 78098317 | 78098137 | ID=Msa1216380-mRNA-1:five_prime_utr;Parent=Msa1216380-mRNA-1 |
| chr8_1 | five_prime_UTR | 78096945 | 78096950 | 78096945 | ID=Msa1216380-mRNA-1:five_prime_utr;Parent=Msa1216380-mRNA-1 |
| chr8_1 | CDS | 78096851 | 78096944 | 78096851 | ID=Msa1216380-mRNA-1:cds;Parent=Msa1216380-mRNA-1 |
| chr8_1 | CDS | 78096563 | 78096750 | 78096563 | ID=Msa1216380-mRNA-1:cds;Parent=Msa1216380-mRNA-1 |
| chr8_1 | CDS | 78095143 | 78095298 | 78095143 | ID=Msa1216380-mRNA-1:cds;Parent=Msa1216380-mRNA-1 |
| chr8_1 | three_prime_UTR | 78094835 | 78095142 | 78094835 | ID=Msa1216380-mRNA-1:three_prime_utr;Parent=Msa1216380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
