Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302020 | XP_013458166.1 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.24e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302020 | sp|Q65WT0|BD31B_ORYSJ | 88.276 | 145 | 17 | 0 | 1 | 145 | 1 | 145 | 2.01e-96 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302020 | A0A072UR78 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 5.92e-103 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1132860 | Msa1302020 | 0.805722 | 1.163466e-49 | -8.615850e-47 |
| Msa1216130 | Msa1302020 | 0.869799 | 2.362320e-66 | -8.615850e-47 |
| Msa1216380 | Msa1302020 | 0.952336 | 3.017739e-110 | -8.615850e-47 |
| Msa0580390 | Msa1302020 | 0.804513 | 2.083381e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302020 | MtrunA17_Chr4g0065671 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.14e-106 | 300 |
| Msa1302020 | MtrunA17_Chr8g0378051 | 96.552 | 145 | 5 | 0 | 1 | 145 | 1 | 145 | 1.88e-104 | 294 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1302020 | AT4G21110.1 | 86.207 | 145 | 20 | 0 | 1 | 145 | 1 | 145 | 6.07e-95 | 270 |
| Msa1302020 | AT4G21110.2 | 86.207 | 145 | 20 | 0 | 1 | 145 | 1 | 145 | 6.07e-95 | 270 |
Find 70 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAATTTCCTTTCTCTTA+TGG | 0.231250 | 8_3:+64325744 | None:intergenic |
| TCAATTAATTCCCAGCCTTC+TGG | 0.234580 | 8_3:+64326002 | None:intergenic |
| TGTCTTCTCATTCTTCTTCT+CGG | 0.300836 | 8_3:-64327330 | Msa1302020:five_prime_UTR |
| TTCTCCTCCCTGAGCTCCTT+GGG | 0.301872 | 8_3:+64324307 | None:intergenic |
| CAAATACATAGCGGCTCTTC+TGG | 0.318337 | 8_3:+64325774 | None:intergenic |
| ACTCGGCTTGTCTTTACTTT+CGG | 0.326256 | 8_3:+64326032 | None:intergenic |
| CTTCTCCTCCCTGAGCTCCT+TGG | 0.345032 | 8_3:+64324306 | None:intergenic |
| TATTAATCTGGAGGGTTTGT+TGG | 0.350816 | 8_3:-64324218 | Msa1302020:three_prime_UTR |
| GGACCTCAATTATATTAATC+TGG | 0.356373 | 8_3:-64324230 | Msa1302020:three_prime_UTR |
| GAGGTAAACTCCGTCGCTTC+CGG | 0.376156 | 8_3:-64327302 | Msa1302020:five_prime_UTR |
| AAAGAAAATGTGAGACTTTG+TGG | 0.382714 | 8_3:-64325817 | Msa1302020:CDS |
| ACCGCAACCTAATTGCAAAA+TGG | 0.383315 | 8_3:-64325682 | Msa1302020:CDS |
| GCAGAGTGCCCAAGGAGCTC+AGG | 0.388903 | 8_3:-64324315 | Msa1302020:CDS |
| CAATTAATTCCCAGCCTTCT+GGG | 0.404207 | 8_3:+64326003 | None:intergenic |
| TATGAATTCTGTTTAGATCA+AGG | 0.408300 | 8_3:-64325713 | Msa1302020:CDS |
| TTGTGCAAGTGGGGATTGAT+TGG | 0.417476 | 8_3:-64324251 | Msa1302020:exon |
| CCTACACTTCGTGAACTTCA+AGG | 0.446024 | 8_3:-64325978 | Msa1302020:CDS |
| AATGTTACAAAACTCAAGTC+AGG | 0.471208 | 8_3:+64324072 | None:intergenic |
| CTCAATTATATTAATCTGGA+GGG | 0.480934 | 8_3:-64324226 | Msa1302020:three_prime_UTR |
| AGCCTTCTGGGTATTTAACT+CGG | 0.490950 | 8_3:+64326015 | None:intergenic |
| GAGTTAAATACCCAGAAGGC+TGG | 0.492946 | 8_3:-64326013 | Msa1302020:CDS |
| CAAGGAGCTCAGGGAGGAGA+AGG | 0.494422 | 8_3:-64324305 | Msa1302020:CDS |
| TTATCGTATAAGTTACTCAC+TGG | 0.501554 | 8_3:-64327367 | Msa1302020:five_prime_UTR |
| CCTTTGCTTATTGTCGTCTG+AGG | 0.507480 | 8_3:-64327250 | Msa1302020:five_prime_UTR |
| GTGTGTTCATTGTGGTTGCA+AGG | 0.509966 | 8_3:-64324275 | Msa1302020:CDS |
| GTTGCAAGGGTTGTGCAAGT+GGG | 0.512248 | 8_3:-64324261 | Msa1302020:CDS |
| GGTTGCAAGGGTTGTGCAAG+TGG | 0.514571 | 8_3:-64324262 | Msa1302020:CDS |
| CAACATAGGCGTTCATAACC+AGG | 0.518122 | 8_3:+64324388 | None:intergenic |
| ACTTCACAAGAGCTATGCAT+TGG | 0.521024 | 8_3:-64324138 | Msa1302020:three_prime_UTR |
| CTTCACAAGAGCTATGCATT+GGG | 0.524120 | 8_3:-64324137 | Msa1302020:three_prime_UTR |
| CCTAATTGCAAAATGGAAGA+AGG | 0.526082 | 8_3:-64325675 | Msa1302020:intron |
| CTTTGCTTATTGTCGTCTGA+GGG | 0.527430 | 8_3:-64327249 | Msa1302020:intron |
| AAAGGTGAGCGGTGGGTGGT+TGG | 0.529818 | 8_3:+64327268 | None:intergenic |
| GTATGCACCTCAAGCAACAT+AGG | 0.540597 | 8_3:+64324374 | None:intergenic |
| CCTCCAGATTAATATAATTG+AGG | 0.542772 | 8_3:+64324227 | None:intergenic |
| CCTTGAAGTTCACGAAGTGT+AGG | 0.544038 | 8_3:+64325978 | None:intergenic |
| CGCACAACTGCCGGAAGCGA+CGG | 0.544706 | 8_3:+64327292 | None:intergenic |
| CAGAGTGCCCAAGGAGCTCA+GGG | 0.552081 | 8_3:-64324314 | Msa1302020:CDS |
| TGTGTTCATTGTGGTTGCAA+GGG | 0.552779 | 8_3:-64324274 | Msa1302020:CDS |
| TTGCAAGGGTTGTGCAAGTG+GGG | 0.556074 | 8_3:-64324260 | Msa1302020:CDS |
| TGAACTCTACCATAAGAGAA+AGG | 0.559158 | 8_3:-64325753 | Msa1302020:CDS |
| AAGAATGAGAAGACAAGTAG+TGG | 0.559866 | 8_3:+64327338 | None:intergenic |
| AGTTAAATACCCAGAAGGCT+GGG | 0.561161 | 8_3:-64326012 | Msa1302020:CDS |
| CCTCAATTATATTAATCTGG+AGG | 0.565832 | 8_3:-64324227 | Msa1302020:three_prime_UTR |
| CTTCAAGGAAAGATGAGGGA+AGG | 0.566524 | 8_3:-64325963 | Msa1302020:intron |
| GTGGTTGGTCGCACAACTGC+CGG | 0.567423 | 8_3:+64327283 | None:intergenic |
| TTGTGTATGCAGAGTGCCCA+AGG | 0.571684 | 8_3:-64324323 | Msa1302020:CDS |
| GTTATAGAGTGTGTTCATTG+TGG | 0.573951 | 8_3:-64324283 | Msa1302020:CDS |
| ATTCTTCTTCTCGGTTGTCG+AGG | 0.580297 | 8_3:-64327321 | Msa1302020:five_prime_UTR |
| GTGAACTTCAAGGAAAGATG+AGG | 0.592845 | 8_3:-64325968 | Msa1302020:CDS |
| CAATAAGCAAAGGTGAGCGG+TGG | 0.595728 | 8_3:+64327260 | None:intergenic |
| CACTCTGCATACACAAGTGG+TGG | 0.609114 | 8_3:+64324330 | None:intergenic |
| CAGTAGTGATACAACGTAGA+GGG | 0.615913 | 8_3:+64324169 | None:intergenic |
| AATAAGCAAAGGTGAGCGGT+GGG | 0.617144 | 8_3:+64327261 | None:intergenic |
| GCTGAGAATGACCCACATGA+TGG | 0.619377 | 8_3:-64325842 | Msa1302020:CDS |
| AAGCAAAGGTGAGCGGTGGG+TGG | 0.625169 | 8_3:+64327264 | None:intergenic |
| AATTAATAATAATACACAAG+GGG | 0.637439 | 8_3:+64324011 | None:intergenic |
| ACAATTAATAATAATACACA+AGG | 0.638593 | 8_3:+64324009 | None:intergenic |
| TGAACTTCAAGGAAAGATGA+GGG | 0.638807 | 8_3:-64325967 | Msa1302020:CDS |
| ATGAACGCCTATGTTGCTTG+AGG | 0.642564 | 8_3:-64324381 | Msa1302020:CDS |
| GGGCACTCTGCATACACAAG+TGG | 0.642607 | 8_3:+64324327 | None:intergenic |
| AGCCGAGTTAAATACCCAGA+AGG | 0.645736 | 8_3:-64326017 | Msa1302020:CDS |
| TTGTATTGACTATTGAGCGA+AGG | 0.655791 | 8_3:+64323973 | None:intergenic |
| CGACAATAAGCAAAGGTGAG+CGG | 0.662024 | 8_3:+64327257 | None:intergenic |
| CAATTAATAATAATACACAA+GGG | 0.677423 | 8_3:+64324010 | None:intergenic |
| GTGGCGAAATTGTGATCGCG+TGG | 0.685360 | 8_3:+64324349 | None:intergenic |
| CCTCAGACGACAATAAGCAA+AGG | 0.685637 | 8_3:+64327250 | None:intergenic |
| ACAGTAGTGATACAACGTAG+AGG | 0.690605 | 8_3:+64324168 | None:intergenic |
| AGTGCCCAAGGAGCTCAGGG+AGG | 0.692740 | 8_3:-64324311 | Msa1302020:CDS |
| GGTAGAGTTCAAATACATAG+CGG | 0.738599 | 8_3:+64325765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATATATATTCCTATA+TGG | + | chr8_3:64326542-64326561 | None:intergenic | 10.0% |
| !! | TTCAAATTATTCAAGAAATT+AGG | + | chr8_3:64324308-64324327 | None:intergenic | 15.0% |
| !! | TTAACACATAAAAACAATTA+GGG | + | chr8_3:64324624-64324643 | None:intergenic | 15.0% |
| !! | ATTAACACATAAAAACAATT+AGG | + | chr8_3:64324625-64324644 | None:intergenic | 15.0% |
| !!! | TAAATAACTACTTTTGTAAA+TGG | - | chr8_3:64324654-64324673 | Msa1302020:intron | 15.0% |
| !! | AAATGAAAATATGACATATA+AGG | + | chr8_3:64325284-64325303 | None:intergenic | 15.0% |
| !! | AATTAATAATAATACACAAG+GGG | + | chr8_3:64327342-64327361 | None:intergenic | 15.0% |
| !! | CAATTAATAATAATACACAA+GGG | + | chr8_3:64327343-64327362 | None:intergenic | 15.0% |
| !! | ACAATTAATAATAATACACA+AGG | + | chr8_3:64327344-64327363 | None:intergenic | 15.0% |
| !!! | CTGTTCTTCAATATTTTTTA+GGG | - | chr8_3:64324136-64324155 | Msa1302020:three_prime_UTR | 20.0% |
| !! | AAGCTTAATTAAAATCACTT+AGG | + | chr8_3:64324166-64324185 | None:intergenic | 20.0% |
| !! | TCTTATCAATTGTATATACT+TGG | + | chr8_3:64325057-64325076 | None:intergenic | 20.0% |
| !! | TAACATAAATGGAACTTTAA+AGG | + | chr8_3:64325236-64325255 | None:intergenic | 20.0% |
| !! | ATATTGTTATATCCTTTATG+TGG | - | chr8_3:64325483-64325502 | Msa1302020:intron | 20.0% |
| !! | AAAACCATTTAAAAACCAAA+AGG | + | chr8_3:64326233-64326252 | None:intergenic | 20.0% |
| ! | CCTAAAAAATATTGAAGAAC+AGG | + | chr8_3:64324138-64324157 | None:intergenic | 25.0% |
| !!! | CCTGTTCTTCAATATTTTTT+AGG | - | chr8_3:64324135-64324154 | Msa1302020:three_prime_UTR | 25.0% |
| !! | GTTTAAAACGTAAAGAGAAA+AGG | + | chr8_3:64324201-64324220 | None:intergenic | 25.0% |
| !! | TTTACGATGCTTATTTCTTA+AGG | - | chr8_3:64324250-64324269 | Msa1302020:exon | 25.0% |
| ! | ATTCAAGAAATTAGGATACA+CGG | + | chr8_3:64324300-64324319 | None:intergenic | 25.0% |
| ! | AAACCCTTAGTTTATAATGT+TGG | + | chr8_3:64324402-64324421 | None:intergenic | 25.0% |
| !! | TTATAAACTAAGGGTTTGTT+TGG | - | chr8_3:64324405-64324424 | Msa1302020:intron | 25.0% |
| !! | TATAAACTAAGGGTTTGTTT+GGG | - | chr8_3:64324406-64324425 | Msa1302020:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr8_3:64324549-64324568 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | chr8_3:64324597-64324616 | Msa1302020:intron | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr8_3:64324598-64324617 | Msa1302020:intron | 25.0% |
| !! | TTTTATCCAATAATACCAGT+TGG | + | chr8_3:64324957-64324976 | None:intergenic | 25.0% |
| ! | ACTGGTATTATTGGATAAAA+TGG | - | chr8_3:64324957-64324976 | Msa1302020:intron | 25.0% |
| ! | CTGGTATTATTGGATAAAAT+GGG | - | chr8_3:64324958-64324977 | Msa1302020:intron | 25.0% |
| ! | TGGTATTATTGGATAAAATG+GGG | - | chr8_3:64324959-64324978 | Msa1302020:intron | 25.0% |
| ! | TCTATTCTACTTATGTTAAG+AGG | + | chr8_3:64325188-64325207 | None:intergenic | 25.0% |
| ! | ATTCTAGCAAGTAACATAAA+TGG | + | chr8_3:64325247-64325266 | None:intergenic | 25.0% |
| ! | GAATGAAAAAGAATACAGTA+AGG | + | chr8_3:64325439-64325458 | None:intergenic | 25.0% |
| !! | TGGTGTGCAATTTTAAATAT+AGG | + | chr8_3:64325559-64325578 | None:intergenic | 25.0% |
| ! | TAGAAATTTCCTTTCTCTTA+TGG | + | chr8_3:64325609-64325628 | None:intergenic | 25.0% |
| ! | TATGAATTCTGTTTAGATCA+AGG | - | chr8_3:64325637-64325656 | Msa1302020:intron | 25.0% |
| ! | GGAAAGTAAATTTCATTTGA+CGG | - | chr8_3:64325750-64325769 | Msa1302020:CDS | 25.0% |
| ! | GAAAGTAAATTTCATTTGAC+GGG | - | chr8_3:64325751-64325770 | Msa1302020:CDS | 25.0% |
| ! | AACAAGGTGATTAGAATTTA+AGG | + | chr8_3:64325948-64325967 | None:intergenic | 25.0% |
| !! | TAACATTCCTGTCATTTATA+CGG | + | chr8_3:64326107-64326126 | None:intergenic | 25.0% |
| ! | TTCAAGAGACATAATAAACT+CGG | - | chr8_3:64326312-64326331 | Msa1302020:intron | 25.0% |
| ! | TCATTCATTGAATATTCATC+TGG | + | chr8_3:64326441-64326460 | None:intergenic | 25.0% |
| ! | TATTCAATGAATGAACCAAA+TGG | - | chr8_3:64326447-64326466 | Msa1302020:intron | 25.0% |
| !! | TTCACTATTAAACAAGTTGA+AGG | + | chr8_3:64326488-64326507 | None:intergenic | 25.0% |
| !! | TCAACTTGTTTAATAGTGAA+TGG | - | chr8_3:64326488-64326507 | Msa1302020:intron | 25.0% |
| ! | TTTAATAGTGAATGGTTGTT+TGG | - | chr8_3:64326496-64326515 | Msa1302020:intron | 25.0% |
| ! | CAAACAATTACTTTAGCAAA+GGG | + | chr8_3:64326576-64326595 | None:intergenic | 25.0% |
| ! | TCAAACAATTACTTTAGCAA+AGG | + | chr8_3:64326577-64326596 | None:intergenic | 25.0% |
| ! | ACTAAATCTACTCTTACAAT+TGG | - | chr8_3:64326663-64326682 | Msa1302020:intron | 25.0% |
| !!! | AGACAATATTTTTTTCCTAG+AGG | - | chr8_3:64326724-64326743 | Msa1302020:intron | 25.0% |
| ! | ATTAACTGAAGACAATGAAA+AGG | + | chr8_3:64326826-64326845 | None:intergenic | 25.0% |
| ! | ACCGTTGAAAATGAAATATA+TGG | - | chr8_3:64326869-64326888 | Msa1302020:intron | 25.0% |
| !! | GCCATATATTTCATTTTCAA+CGG | + | chr8_3:64326873-64326892 | None:intergenic | 25.0% |
| ! | CTCAATTATATTAATCTGGA+GGG | - | chr8_3:64327124-64327143 | Msa1302020:intron | 25.0% |
| TTATCGTATAAGTTACTCAC+TGG | - | chr8_3:64323983-64324002 | Msa1302020:three_prime_UTR | 30.0% | |
| AAAATATTGAAGAACAGGCA+GGG | + | chr8_3:64324133-64324152 | None:intergenic | 30.0% | |
| AAAAATATTGAAGAACAGGC+AGG | + | chr8_3:64324134-64324153 | None:intergenic | 30.0% | |
| TTTAATTAAGCTTATGCTCG+TGG | - | chr8_3:64324173-64324192 | Msa1302020:three_prime_UTR | 30.0% | |
| ! | GGTTTTTGAATCATCAACAA+TGG | - | chr8_3:64324271-64324290 | Msa1302020:CDS | 30.0% |
| TTTCTTATGATGTCATGTTG+TGG | - | chr8_3:64324346-64324365 | Msa1302020:CDS | 30.0% | |
| TGTGCCAACATTATAAACTA+AGG | - | chr8_3:64324395-64324414 | Msa1302020:intron | 30.0% | |
| GTGCCAACATTATAAACTAA+GGG | - | chr8_3:64324396-64324415 | Msa1302020:intron | 30.0% | |
| !!! | ACTTGATAGCTAGCTTTTAA+GGG | + | chr8_3:64324724-64324743 | None:intergenic | 30.0% |
| AGAATTTACAGTAAAACACC+TGG | - | chr8_3:64324990-64325009 | Msa1302020:intron | 30.0% | |
| AGTTAGGTTAAGTTAGTTAG+CGG | + | chr8_3:64325135-64325154 | None:intergenic | 30.0% | |
| TTAGTTAAGAAGAGTTCACT+TGG | + | chr8_3:64325160-64325179 | None:intergenic | 30.0% | |
| CAAGCTATGAAGTTGTTTAT+AGG | + | chr8_3:64325211-64325230 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTTGCCATCATGT+GGG | + | chr8_3:64325522-64325541 | None:intergenic | 30.0% |
| AAAGAAAATGTGAGACTTTG+TGG | - | chr8_3:64325533-64325552 | Msa1302020:intron | 30.0% | |
| AGAAGTGAGAAATCTATATC+TGG | - | chr8_3:64325797-64325816 | Msa1302020:CDS | 30.0% | |
| GAAGTGAGAAATCTATATCT+GGG | - | chr8_3:64325798-64325817 | Msa1302020:CDS | 30.0% | |
| GTAAAGTAACCTTAAGCATA+TGG | - | chr8_3:64325872-64325891 | Msa1302020:intron | 30.0% | |
| ! | TATGGTTTGTAGCAAAAACA+AGG | + | chr8_3:64325964-64325983 | None:intergenic | 30.0% |
| CAATTTATTCTTGCACTATG+AGG | + | chr8_3:64326063-64326082 | None:intergenic | 30.0% | |
| GTATAAATGACAGGAATGTT+AGG | - | chr8_3:64326106-64326125 | Msa1302020:intron | 30.0% | |
| AATGATCAAGTCCTTTACTT+TGG | + | chr8_3:64326204-64326223 | None:intergenic | 30.0% | |
| ! | TTGATCATTTAGTGACCTTT+TGG | - | chr8_3:64326215-64326234 | Msa1302020:intron | 30.0% |
| !!! | GTGACCTTTTGGTTTTTAAA+TGG | - | chr8_3:64326226-64326245 | Msa1302020:intron | 30.0% |
| ! | GAACAATTTATTTGAGACCT+TGG | + | chr8_3:64326295-64326314 | None:intergenic | 30.0% |
| !! | TTTGGTGTATGTCTTAGTTT+TGG | - | chr8_3:64326514-64326533 | Msa1302020:intron | 30.0% |
| !!! | TTTTTTTCCTAGAGGTTACA+AGG | - | chr8_3:64326732-64326751 | Msa1302020:intron | 30.0% |
| GGACCTCAATTATATTAATC+TGG | - | chr8_3:64327120-64327139 | Msa1302020:intron | 30.0% | |
| CCTCCAGATTAATATAATTG+AGG | + | chr8_3:64327126-64327145 | None:intergenic | 30.0% | |
| CCTCAATTATATTAATCTGG+AGG | - | chr8_3:64327123-64327142 | Msa1302020:intron | 30.0% | |
| AATGTTACAAAACTCAAGTC+AGG | + | chr8_3:64327281-64327300 | None:intergenic | 30.0% | |
| !! | GACTTGAGTTTTGTAACATT+TGG | - | chr8_3:64327281-64327300 | Msa1302020:five_prime_UTR | 30.0% |
| AAGAATGAGAAGACAAGTAG+TGG | + | chr8_3:64324015-64324034 | None:intergenic | 35.0% | |
| TGTCTTCTCATTCTTCTTCT+CGG | - | chr8_3:64324020-64324039 | Msa1302020:three_prime_UTR | 35.0% | |
| !!! | GACTTGATAGCTAGCTTTTA+AGG | + | chr8_3:64324725-64324744 | None:intergenic | 35.0% |
| TCGAAACCAACTGGTATTAT+TGG | - | chr8_3:64324948-64324967 | Msa1302020:intron | 35.0% | |
| ! | TGTATATACTTGGAGCCTTT+TGG | + | chr8_3:64325047-64325066 | None:intergenic | 35.0% |
| CATGTTGCCTATAGATAAGA+GGG | + | chr8_3:64325098-64325117 | None:intergenic | 35.0% | |
| ACATGTTGCCTATAGATAAG+AGG | + | chr8_3:64325099-64325118 | None:intergenic | 35.0% | |
| AAGAGTTCACTTGGTAAGTT+AGG | + | chr8_3:64325151-64325170 | None:intergenic | 35.0% | |
| TGAACTTCAAGGAAAGATGA+GGG | - | chr8_3:64325383-64325402 | Msa1302020:intron | 35.0% | |
| ! | CATTTTCTTTTGCCATCATG+TGG | + | chr8_3:64325523-64325542 | None:intergenic | 35.0% |
| GGTAGAGTTCAAATACATAG+CGG | + | chr8_3:64325588-64325607 | None:intergenic | 35.0% | |
| TGAACTCTACCATAAGAGAA+AGG | - | chr8_3:64325597-64325616 | Msa1302020:intron | 35.0% | |
| !! | TCCATTTTGCAATTAGGTTG+CGG | + | chr8_3:64325672-64325691 | None:intergenic | 35.0% |
| ! | CCTTCTTCCATTTTGCAATT+AGG | + | chr8_3:64325678-64325697 | None:intergenic | 35.0% |
| CCTAATTGCAAAATGGAAGA+AGG | - | chr8_3:64325675-64325694 | Msa1302020:intron | 35.0% | |
| GAGATAGAATAAGTACGATC+AGG | - | chr8_3:64325773-64325792 | Msa1302020:CDS | 35.0% | |
| ! | GCTTAAGGTTACTTTACCTA+GGG | + | chr8_3:64325869-64325888 | None:intergenic | 35.0% |
| ! | TGCTTAAGGTTACTTTACCT+AGG | + | chr8_3:64325870-64325889 | None:intergenic | 35.0% |
| GAGACATATCCATATGCTTA+AGG | + | chr8_3:64325884-64325903 | None:intergenic | 35.0% | |
| !!! | CCTTCTCGAGCAATTTTTTA+TGG | + | chr8_3:64325982-64326001 | None:intergenic | 35.0% |
| CCATAAAAAATTGCTCGAGA+AGG | - | chr8_3:64325979-64325998 | Msa1302020:CDS | 35.0% | |
| GAGTAAACTCTCCAAAGTAA+AGG | - | chr8_3:64326190-64326209 | Msa1302020:intron | 35.0% | |
| TAAAGTTATGCCTGTGAGTA+AGG | - | chr8_3:64326267-64326286 | Msa1302020:intron | 35.0% | |
| AGTGAACTACAATCAGCTTT+AGG | + | chr8_3:64326344-64326363 | None:intergenic | 35.0% | |
| TAAAGCTGATTGTAGTTCAC+TGG | - | chr8_3:64326343-64326362 | Msa1302020:intron | 35.0% | |
| !!! | TCTTAGTTTTGGCTCCATAT+AGG | - | chr8_3:64326525-64326544 | Msa1302020:intron | 35.0% |
| CATCGTAGTTGCTATCTATA+AGG | - | chr8_3:64326619-64326638 | Msa1302020:intron | 35.0% | |
| GCAGTAAACAACAGTGATAT+TGG | + | chr8_3:64326804-64326823 | None:intergenic | 35.0% | |
| GTTATAGAGTGTGTTCATTG+TGG | - | chr8_3:64327067-64327086 | Msa1302020:intron | 35.0% | |
| TATTAATCTGGAGGGTTTGT+TGG | - | chr8_3:64327132-64327151 | Msa1302020:intron | 35.0% | |
| !!! | AAGTCAGGTTTTGAACTATG+CGG | + | chr8_3:64327266-64327285 | None:intergenic | 35.0% |
| !! | TTGTATTGACTATTGAGCGA+AGG | + | chr8_3:64327380-64327399 | None:intergenic | 35.0% |
| CTTTGCTTATTGTCGTCTGA+GGG | - | chr8_3:64324101-64324120 | Msa1302020:three_prime_UTR | 40.0% | |
| CTTATGATGTCATGTTGTGG+TGG | - | chr8_3:64324349-64324368 | Msa1302020:CDS | 40.0% | |
| ! | AACTAAGGGTTTGTTTGGGT+TGG | - | chr8_3:64324410-64324429 | Msa1302020:intron | 40.0% |
| AAAAACAATTAGGGCCCGTT+TGG | + | chr8_3:64324615-64324634 | None:intergenic | 40.0% | |
| !!! | GATAGCTAGCTTTTAAGGGA+GGG | + | chr8_3:64324720-64324739 | None:intergenic | 40.0% |
| !!! | TGATAGCTAGCTTTTAAGGG+AGG | + | chr8_3:64324721-64324740 | None:intergenic | 40.0% |
| AATTCCACATCAGGCAGTAT+GGG | + | chr8_3:64324771-64324790 | None:intergenic | 40.0% | |
| AAATTCCACATCAGGCAGTA+TGG | + | chr8_3:64324772-64324791 | None:intergenic | 40.0% | |
| TAGAGTCTCTCTAATACTCC+AGG | + | chr8_3:64325011-64325030 | None:intergenic | 40.0% | |
| GATAAGATAGCTCACTCTCT+AGG | - | chr8_3:64325070-64325089 | Msa1302020:intron | 40.0% | |
| ! | ACTCGGCTTGTCTTTACTTT+CGG | + | chr8_3:64325321-64325340 | None:intergenic | 40.0% |
| AGCCTTCTGGGTATTTAACT+CGG | + | chr8_3:64325338-64325357 | None:intergenic | 40.0% | |
| AGTTAAATACCCAGAAGGCT+GGG | - | chr8_3:64325338-64325357 | Msa1302020:intron | 40.0% | |
| CAATTAATTCCCAGCCTTCT+GGG | + | chr8_3:64325350-64325369 | None:intergenic | 40.0% | |
| TCAATTAATTCCCAGCCTTC+TGG | + | chr8_3:64325351-64325370 | None:intergenic | 40.0% | |
| GTGAACTTCAAGGAAAGATG+AGG | - | chr8_3:64325382-64325401 | Msa1302020:intron | 40.0% | |
| ACCGCAACCTAATTGCAAAA+TGG | - | chr8_3:64325668-64325687 | Msa1302020:intron | 40.0% | |
| GTTACACTTTCCTACTCTTG+TGG | + | chr8_3:64325847-64325866 | None:intergenic | 40.0% | |
| CAGTAGGACTGCAAATGATA+CGG | - | chr8_3:64325918-64325937 | Msa1302020:intron | 40.0% | |
| AGTAGGACTGCAAATGATAC+GGG | - | chr8_3:64325919-64325938 | Msa1302020:intron | 40.0% | |
| GCTCTCTGATCATCCTAAAA+AGG | - | chr8_3:64326015-64326034 | Msa1302020:CDS | 40.0% | |
| TCCTAAAAAGGTCATTTCGC+AGG | - | chr8_3:64326027-64326046 | Msa1302020:CDS | 40.0% | |
| CCTAAAAAGGTCATTTCGCA+GGG | - | chr8_3:64326028-64326047 | Msa1302020:CDS | 40.0% | |
| GCTAGATCCGTATAAATGAC+AGG | - | chr8_3:64326097-64326116 | Msa1302020:intron | 40.0% | |
| GACAGGAATGTTAGGAGAAA+TGG | - | chr8_3:64326114-64326133 | Msa1302020:intron | 40.0% | |
| AGGAATGTTAGGAGAAATGG+TGG | - | chr8_3:64326117-64326136 | Msa1302020:intron | 40.0% | |
| TTAGGAGAAATGGTGGTAGA+AGG | - | chr8_3:64326124-64326143 | Msa1302020:intron | 40.0% | |
| ! | CTGATTGTAGTTCACTGGTT+TGG | - | chr8_3:64326348-64326367 | Msa1302020:intron | 40.0% |
| TTACCAAGATTCACGCCATT+TGG | + | chr8_3:64326465-64326484 | None:intergenic | 40.0% | |
| ACAACAACCTTGTAACCTCT+AGG | + | chr8_3:64326742-64326761 | None:intergenic | 40.0% | |
| !! | TTTGTTTCTGAATTGCAGCC+TGG | - | chr8_3:64326944-64326963 | Msa1302020:intron | 40.0% |
| TGTGTTCATTGTGGTTGCAA+GGG | - | chr8_3:64327076-64327095 | Msa1302020:intron | 40.0% | |
| CAGTAGTGATACAACGTAGA+GGG | + | chr8_3:64327184-64327203 | None:intergenic | 40.0% | |
| ACAGTAGTGATACAACGTAG+AGG | + | chr8_3:64327185-64327204 | None:intergenic | 40.0% | |
| ACTTCACAAGAGCTATGCAT+TGG | - | chr8_3:64327212-64327231 | Msa1302020:intron | 40.0% | |
| CTTCACAAGAGCTATGCATT+GGG | - | chr8_3:64327213-64327232 | Msa1302020:intron | 40.0% | |
| ATTCTTCTTCTCGGTTGTCG+AGG | - | chr8_3:64324029-64324048 | Msa1302020:three_prime_UTR | 45.0% | |
| AATAAGCAAAGGTGAGCGGT+GGG | + | chr8_3:64324092-64324111 | None:intergenic | 45.0% | |
| CGACAATAAGCAAAGGTGAG+CGG | + | chr8_3:64324096-64324115 | None:intergenic | 45.0% | |
| CCTCAGACGACAATAAGCAA+AGG | + | chr8_3:64324103-64324122 | None:intergenic | 45.0% | |
| CCTTTGCTTATTGTCGTCTG+AGG | - | chr8_3:64324100-64324119 | Msa1302020:three_prime_UTR | 45.0% | |
| !! | AGGGAGGGTACTTATCAACT+TGG | + | chr8_3:64324705-64324724 | None:intergenic | 45.0% |
| TCACTCTACAACGCTGTACT+TGG | - | chr8_3:64324856-64324875 | Msa1302020:intron | 45.0% | |
| TCCAGTTGATCGAAACCAAC+TGG | - | chr8_3:64324939-64324958 | Msa1302020:intron | 45.0% | |
| ! | ACCAGTTGGTTTCGATCAAC+TGG | + | chr8_3:64324943-64324962 | None:intergenic | 45.0% |
| TAGACTCTCCCAATGCCAAA+AGG | - | chr8_3:64325029-64325048 | Msa1302020:intron | 45.0% | |
| ! | ACTTGGAGCCTTTTGGCATT+GGG | + | chr8_3:64325040-64325059 | None:intergenic | 45.0% |
| ! | TACTTGGAGCCTTTTGGCAT+TGG | + | chr8_3:64325041-64325060 | None:intergenic | 45.0% |
| CTAGGCTCCCTCTTATCTAT+AGG | - | chr8_3:64325088-64325107 | Msa1302020:intron | 45.0% | |
| AGCCGAGTTAAATACCCAGA+AGG | - | chr8_3:64325333-64325352 | Msa1302020:intron | 45.0% | |
| GAGTTAAATACCCAGAAGGC+TGG | - | chr8_3:64325337-64325356 | Msa1302020:intron | 45.0% | |
| CCTTGAAGTTCACGAAGTGT+AGG | + | chr8_3:64325375-64325394 | None:intergenic | 45.0% | |
| CCTACACTTCGTGAACTTCA+AGG | - | chr8_3:64325372-64325391 | Msa1302020:intron | 45.0% | |
| CTTCAAGGAAAGATGAGGGA+AGG | - | chr8_3:64325387-64325406 | Msa1302020:intron | 45.0% | |
| CATTCTCAGCTGCCACATAA+AGG | + | chr8_3:64325498-64325517 | None:intergenic | 45.0% | |
| CAAATACATAGCGGCTCTTC+TGG | + | chr8_3:64325579-64325598 | None:intergenic | 45.0% | |
| TGGTGGTAAAAGGCAAGTGT+TGG | + | chr8_3:64325827-64325846 | None:intergenic | 45.0% | |
| CCTACTCTTGTGGTGGTAAA+AGG | + | chr8_3:64325837-64325856 | None:intergenic | 45.0% | |
| ! | CCTTTTACCACCACAAGAGT+AGG | - | chr8_3:64325834-64325853 | Msa1302020:CDS | 45.0% |
| ACACTTTCCTACTCTTGTGG+TGG | + | chr8_3:64325844-64325863 | None:intergenic | 45.0% | |
| ! | GAGTAGGAAAGTGTAACCCT+AGG | - | chr8_3:64325850-64325869 | Msa1302020:intron | 45.0% |
| TCTCCTACCACATACACAGT+AGG | - | chr8_3:64325902-64325921 | Msa1302020:intron | 45.0% | |
| AGTCCTACTGTGTATGTGGT+AGG | + | chr8_3:64325908-64325927 | None:intergenic | 45.0% | |
| TTGCAGTCCTACTGTGTATG+TGG | + | chr8_3:64325912-64325931 | None:intergenic | 45.0% | |
| ! | CCCTGCGAAATGACCTTTTT+AGG | + | chr8_3:64326031-64326050 | None:intergenic | 45.0% |
| GGATCTAGCTAACAAGCATC+AGG | + | chr8_3:64326086-64326105 | None:intergenic | 45.0% | |
| TTCTGTCTGTGGGCAAATTG+TGG | + | chr8_3:64326408-64326427 | None:intergenic | 45.0% | |
| TGCCCACAGACAGAATTCTA+AGG | - | chr8_3:64326413-64326432 | Msa1302020:intron | 45.0% | |
| GCCCACAGACAGAATTCTAA+GGG | - | chr8_3:64326414-64326433 | Msa1302020:intron | 45.0% | |
| CCCCTTAGAATTCTGTCTGT+GGG | + | chr8_3:64326418-64326437 | None:intergenic | 45.0% | |
| CCCACAGACAGAATTCTAAG+GGG | - | chr8_3:64326415-64326434 | Msa1302020:intron | 45.0% | |
| GAACCAAATGGCGTGAATCT+TGG | - | chr8_3:64326459-64326478 | Msa1302020:intron | 45.0% | |
| CAACATAGGCGTTCATAACC+AGG | + | chr8_3:64326965-64326984 | None:intergenic | 45.0% | |
| ! | ATGAACGCCTATGTTGCTTG+AGG | - | chr8_3:64326969-64326988 | Msa1302020:intron | 45.0% |
| GTATGCACCTCAAGCAACAT+AGG | + | chr8_3:64326979-64326998 | None:intergenic | 45.0% | |
| GTGTGTTCATTGTGGTTGCA+AGG | - | chr8_3:64327075-64327094 | Msa1302020:intron | 45.0% | |
| TTGTGCAAGTGGGGATTGAT+TGG | - | chr8_3:64327099-64327118 | Msa1302020:intron | 45.0% | |
| !!! | TATTTTGTTTTTTTTTTTAT+AGG | - | chr8_3:64325729-64325748 | Msa1302020:CDS | 5.0% |
| CAATAAGCAAAGGTGAGCGG+TGG | + | chr8_3:64324093-64324112 | None:intergenic | 50.0% | |
| ! | TGCTCAATGGAGTGTCTGAG+TGG | + | chr8_3:64324747-64324766 | None:intergenic | 50.0% |
| AGGCAGTATGGGATGCTCAA+TGG | + | chr8_3:64324760-64324779 | None:intergenic | 50.0% | |
| GTGCACGCAAATTCCACATC+AGG | + | chr8_3:64324780-64324799 | None:intergenic | 50.0% | |
| !! | TCATGGACGGTGCTACAGTA+GGG | + | chr8_3:64324816-64324835 | None:intergenic | 50.0% |
| ! | AACGCTGTACTTGGCCTTTC+TGG | - | chr8_3:64324865-64324884 | Msa1302020:intron | 50.0% |
| GAATCAGAGCTGGTTGTTGG+TGG | + | chr8_3:64324921-64324940 | None:intergenic | 50.0% | |
| CTGGAATCAGAGCTGGTTGT+TGG | + | chr8_3:64324924-64324943 | None:intergenic | 50.0% | |
| CGATCAACTGGAATCAGAGC+TGG | + | chr8_3:64324931-64324950 | None:intergenic | 50.0% | |
| GCTGAGAATGACCCACATGA+TGG | - | chr8_3:64325508-64325527 | Msa1302020:intron | 50.0% | |
| !! | TAGGATGATCAGAGAGCACC+AGG | + | chr8_3:64326012-64326031 | None:intergenic | 50.0% |
| GCCCCTTAGAATTCTGTCTG+TGG | + | chr8_3:64326419-64326438 | None:intergenic | 50.0% | |
| CACTCTGCATACACAAGTGG+TGG | + | chr8_3:64327023-64327042 | None:intergenic | 50.0% | |
| ! | TTGTGTATGCAGAGTGCCCA+AGG | - | chr8_3:64327027-64327046 | Msa1302020:intron | 50.0% |
| GTTGCAAGGGTTGTGCAAGT+GGG | - | chr8_3:64327089-64327108 | Msa1302020:intron | 50.0% | |
| TTGCAAGGGTTGTGCAAGTG+GGG | - | chr8_3:64327090-64327109 | Msa1302020:intron | 50.0% | |
| GAGGTAAACTCCGTCGCTTC+CGG | - | chr8_3:64324048-64324067 | Msa1302020:three_prime_UTR | 55.0% | |
| GCATCCCATACTGCCTGATG+TGG | - | chr8_3:64324764-64324783 | Msa1302020:intron | 55.0% | |
| !! | CGGTGCTACAGTAGGGGTTT+GGG | + | chr8_3:64324809-64324828 | None:intergenic | 55.0% |
| !! | ACGGTGCTACAGTAGGGGTT+TGG | + | chr8_3:64324810-64324829 | None:intergenic | 55.0% |
| !! | CATGGACGGTGCTACAGTAG+GGG | + | chr8_3:64324815-64324834 | None:intergenic | 55.0% |
| !! | CTCATGGACGGTGCTACAGT+AGG | + | chr8_3:64324817-64324836 | None:intergenic | 55.0% |
| CGCAAGTCAGCTCTCATGGA+CGG | + | chr8_3:64324829-64324848 | None:intergenic | 55.0% | |
| !! | CGTCCATGAGAGCTGACTTG+CGG | - | chr8_3:64324827-64324846 | Msa1302020:intron | 55.0% |
| TGTCCGCAAGTCAGCTCTCA+TGG | + | chr8_3:64324833-64324852 | None:intergenic | 55.0% | |
| TACGGAGGAGCTGACCAGAA+AGG | + | chr8_3:64324882-64324901 | None:intergenic | 55.0% | |
| ! | TTTCTGGTCAGCTCCTCCGT+AGG | - | chr8_3:64324881-64324900 | Msa1302020:intron | 55.0% |
| !! | GGTTGTTGGTGGCTCGGAAA+GGG | + | chr8_3:64324910-64324929 | None:intergenic | 55.0% |
| !! | TGGTTGTTGGTGGCTCGGAA+AGG | + | chr8_3:64324911-64324930 | None:intergenic | 55.0% |
| !! | AGAGCTGGTTGTTGGTGGCT+CGG | + | chr8_3:64324916-64324935 | None:intergenic | 55.0% |
| ! | GCTCGAGAAGGTATAGCACC+TGG | - | chr8_3:64325991-64326010 | Msa1302020:CDS | 55.0% |
| TGCCTGTGAGTAAGGAGCCA+AGG | - | chr8_3:64326275-64326294 | Msa1302020:intron | 55.0% | |
| GACCTTGGCTCCTTACTCAC+AGG | + | chr8_3:64326280-64326299 | None:intergenic | 55.0% | |
| GTGGCGAAATTGTGATCGCG+TGG | + | chr8_3:64327004-64327023 | None:intergenic | 55.0% | |
| GGGCACTCTGCATACACAAG+TGG | + | chr8_3:64327026-64327045 | None:intergenic | 55.0% | |
| TTCTCCTCCCTGAGCTCCTT+GGG | + | chr8_3:64327046-64327065 | None:intergenic | 55.0% | |
| GGTTGCAAGGGTTGTGCAAG+TGG | - | chr8_3:64327088-64327107 | Msa1302020:intron | 55.0% | |
| ! | GTGGTTGGTCGCACAACTGC+CGG | + | chr8_3:64324070-64324089 | None:intergenic | 60.0% |
| AAAGGTGAGCGGTGGGTGGT+TGG | + | chr8_3:64324085-64324104 | None:intergenic | 60.0% | |
| AAGCAAAGGTGAGCGGTGGG+TGG | + | chr8_3:64324089-64324108 | None:intergenic | 60.0% | |
| TCGGAAAGGGCTACCTACGG+AGG | + | chr8_3:64324897-64324916 | None:intergenic | 60.0% | |
| GGCTCGGAAAGGGCTACCTA+CGG | + | chr8_3:64324900-64324919 | None:intergenic | 60.0% | |
| ! | CAGAGTGCCCAAGGAGCTCA+GGG | - | chr8_3:64327036-64327055 | Msa1302020:intron | 60.0% |
| CTTCTCCTCCCTGAGCTCCT+TGG | + | chr8_3:64327047-64327066 | None:intergenic | 60.0% | |
| CAAGGAGCTCAGGGAGGAGA+AGG | - | chr8_3:64327045-64327064 | Msa1302020:intron | 60.0% | |
| CGCACAACTGCCGGAAGCGA+CGG | + | chr8_3:64324061-64324080 | None:intergenic | 65.0% | |
| ! | GCAGAGTGCCCAAGGAGCTC+AGG | - | chr8_3:64327035-64327054 | Msa1302020:intron | 65.0% |
| AGTGCCCAAGGAGCTCAGGG+AGG | - | chr8_3:64327039-64327058 | Msa1302020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 64323947 | 64327425 | 64323947 | ID=Msa1302020;Name=Msa1302020 |
| chr8_3 | mRNA | 64323947 | 64327425 | 64323947 | ID=Msa1302020-mRNA-1;Parent=Msa1302020;Name=Msa1302020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=182|1|1|1|0.66|0.75|4|308|145 |
| chr8_3 | exon | 64323947 | 64324410 | 64323947 | ID=Msa1302020-mRNA-1:exon:19416;Parent=Msa1302020-mRNA-1 |
| chr8_3 | exon | 64325676 | 64325863 | 64325676 | ID=Msa1302020-mRNA-1:exon:19415;Parent=Msa1302020-mRNA-1 |
| chr8_3 | exon | 64325964 | 64326063 | 64325964 | ID=Msa1302020-mRNA-1:exon:19414;Parent=Msa1302020-mRNA-1 |
| chr8_3 | exon | 64327250 | 64327425 | 64327250 | ID=Msa1302020-mRNA-1:exon:19413;Parent=Msa1302020-mRNA-1 |
| chr8_3 | five_prime_UTR | 64327250 | 64327425 | 64327250 | ID=Msa1302020-mRNA-1:five_prime_utr;Parent=Msa1302020-mRNA-1 |
| chr8_3 | five_prime_UTR | 64326058 | 64326063 | 64326058 | ID=Msa1302020-mRNA-1:five_prime_utr;Parent=Msa1302020-mRNA-1 |
| chr8_3 | CDS | 64325964 | 64326057 | 64325964 | ID=Msa1302020-mRNA-1:cds;Parent=Msa1302020-mRNA-1 |
| chr8_3 | CDS | 64325676 | 64325863 | 64325676 | ID=Msa1302020-mRNA-1:cds;Parent=Msa1302020-mRNA-1 |
| chr8_3 | CDS | 64324255 | 64324410 | 64324255 | ID=Msa1302020-mRNA-1:cds;Parent=Msa1302020-mRNA-1 |
| chr8_3 | three_prime_UTR | 64323947 | 64324254 | 64323947 | ID=Msa1302020-mRNA-1:three_prime_utr;Parent=Msa1302020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
