Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232550 | XP_003593271.1 | 92.179 | 179 | 13 | 1 | 1 | 178 | 1 | 179 | 2.71e-107 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232550 | Q2HVA3 | 92.179 | 179 | 13 | 1 | 1 | 178 | 1 | 179 | 1.29e-107 | 316 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0232550 | 0.800444 | 1.437354e-48 | -8.615850e-47 |
| Msa0027580 | Msa0232550 | 0.804217 | 2.401238e-49 | -8.615850e-47 |
| Msa0036370 | Msa0232550 | 0.809838 | 1.552127e-50 | -8.615850e-47 |
| Msa0061970 | Msa0232550 | 0.816691 | 4.853226e-52 | -8.615850e-47 |
| Msa0072170 | Msa0232550 | 0.826546 | 2.556176e-54 | -8.615850e-47 |
| Msa0075340 | Msa0232550 | 0.805983 | 1.025567e-49 | -8.615850e-47 |
| Msa0076780 | Msa0232550 | 0.814463 | 1.521342e-51 | -8.615850e-47 |
| Msa0077010 | Msa0232550 | 0.810482 | 1.127734e-50 | -8.615850e-47 |
| Msa0120540 | Msa0232550 | 0.818802 | 1.620786e-52 | -8.615850e-47 |
| Msa0121820 | Msa0232550 | 0.800869 | 1.177379e-48 | -8.615850e-47 |
| Msa0126840 | Msa0232550 | 0.838748 | 2.391690e-57 | -8.615850e-47 |
| Msa0126880 | Msa0232550 | 0.818791 | 1.630422e-52 | -8.615850e-47 |
| Msa0127040 | Msa0232550 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0166750 | Msa0232550 | 0.838662 | 2.516735e-57 | -8.615850e-47 |
| Msa0171940 | Msa0232550 | 0.810842 | 9.426165e-51 | -8.615850e-47 |
| Msa0190120 | Msa0232550 | 0.823946 | 1.053496e-53 | -8.615850e-47 |
| Msa0232550 | Msa0271890 | 0.802745 | 4.848785e-49 | -8.615850e-47 |
| Msa0232550 | Msa0296920 | 0.807175 | 5.747904e-50 | -8.615850e-47 |
| Msa0232550 | Msa0315850 | 0.804576 | 2.021318e-49 | -8.615850e-47 |
| Msa0232550 | Msa0376690 | 0.801229 | 9.937627e-49 | -8.615850e-47 |
| Msa0232550 | Msa0387910 | 0.829470 | 5.057570e-55 | -8.615850e-47 |
| Msa0232550 | Msa0419520 | 0.825774 | 3.901512e-54 | -8.615850e-47 |
| Msa0232550 | Msa0421260 | 0.834449 | 2.977494e-56 | -8.615850e-47 |
| Msa0232550 | Msa0458060 | 0.800929 | 1.144376e-48 | -8.615850e-47 |
| Msa0232550 | Msa0465550 | 0.805168 | 1.520335e-49 | -8.615850e-47 |
| Msa0232550 | Msa0479330 | 0.808512 | 2.986232e-50 | -8.615850e-47 |
| Msa0232550 | Msa0505380 | 0.802493 | 5.466845e-49 | -8.615850e-47 |
| Msa0232550 | Msa0511490 | 0.814161 | 1.773851e-51 | -8.615850e-47 |
| Msa0232550 | Msa0581130 | 0.810939 | 8.983924e-51 | -8.615850e-47 |
| Msa0232550 | Msa0602370 | 0.813855 | 2.072240e-51 | -8.615850e-47 |
| Msa0232550 | Msa0603570 | 0.832783 | 7.761505e-56 | -8.615850e-47 |
| Msa0232550 | Msa0607510 | 0.802051 | 6.738954e-49 | -8.615850e-47 |
| Msa0232550 | Msa0609000 | 0.812865 | 3.419271e-51 | -8.615850e-47 |
| Msa0232550 | Msa0610390 | 0.809647 | 1.706405e-50 | -8.615850e-47 |
| Msa0232550 | Msa0618930 | 0.829690 | 4.469739e-55 | -8.615850e-47 |
| Msa0232550 | Msa0626940 | 0.830102 | 3.548059e-55 | -8.615850e-47 |
| Msa0232550 | Msa0631350 | 0.808016 | 3.810152e-50 | -8.615850e-47 |
| Msa0232550 | Msa0669720 | 0.816786 | 4.621804e-52 | -8.615850e-47 |
| Msa0232550 | Msa0669760 | 0.827387 | 1.608972e-54 | -8.615850e-47 |
| Msa0232550 | Msa0839200 | 0.811221 | 7.802835e-51 | -8.615850e-47 |
| Msa0232550 | Msa0882730 | 0.805716 | 1.167014e-49 | -8.615850e-47 |
| Msa0232550 | Msa0913240 | 0.844947 | 5.513091e-59 | -8.615850e-47 |
| Msa0232550 | Msa0921870 | 0.813143 | 2.971105e-51 | -8.615850e-47 |
| Msa0232550 | Msa0933290 | 0.800908 | 1.155611e-48 | -8.615850e-47 |
| Msa0232550 | Msa1025940 | 0.810313 | 1.226372e-50 | -8.615850e-47 |
| Msa0232550 | Msa1126850 | 0.809305 | 2.020167e-50 | -8.615850e-47 |
| Msa0232550 | Msa1165780 | 0.817055 | 4.021043e-52 | -8.615850e-47 |
| Msa0232550 | Msa1165960 | 0.812070 | 5.101360e-51 | -8.615850e-47 |
| Msa0232550 | Msa1176980 | 0.840952 | 6.377048e-58 | -8.615850e-47 |
| Msa0232550 | Msa1179980 | 0.808571 | 2.901122e-50 | -8.615850e-47 |
| Msa0232550 | Msa1216210 | 0.800356 | 1.497472e-48 | -8.615850e-47 |
| Msa0232550 | Msa1226610 | 0.810433 | 1.155273e-50 | -8.615850e-47 |
| Msa0232550 | Msa1270620 | 0.813652 | 2.296656e-51 | -8.615850e-47 |
| Msa0232550 | Msa1270690 | 0.808634 | 2.812140e-50 | -8.615850e-47 |
| Msa0232550 | Msa1306990 | 0.813360 | 2.662863e-51 | -8.615850e-47 |
| Msa0232550 | Msa1331250 | 0.801607 | 8.314930e-49 | -8.615850e-47 |
| Msa0232550 | Msa1343290 | 0.817889 | 2.609293e-52 | -8.615850e-47 |
| Msa0232550 | Msa1351540 | 0.806611 | 7.564077e-50 | -8.615850e-47 |
| Msa0232550 | Msa1358430 | 0.800418 | 1.455038e-48 | -8.615850e-47 |
| Msa0232550 | Msa1459960 | 0.804983 | 1.661944e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232550 | MtrunA17_Chr2g0279631 | 92.179 | 179 | 13 | 1 | 1 | 178 | 1 | 179 | 2.49e-111 | 316 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232550 | AT4G33625.1 | 67.213 | 183 | 56 | 1 | 4 | 186 | 5 | 183 | 1.45e-88 | 259 |
| Msa0232550 | AT4G33625.2 | 66.484 | 182 | 57 | 1 | 4 | 185 | 5 | 182 | 7.02e-86 | 252 |
| Msa0232550 | AT4G33625.3 | 67.114 | 149 | 45 | 1 | 4 | 152 | 5 | 149 | 8.89e-69 | 207 |
Find 47 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGATTCATGTGAAAATTT+TGG | 0.061793 | 2_2:+4841348 | Msa0232550:three_prime_UTR |
| TAAATATCTAAAGGCGATAT+TGG | 0.249737 | 2_2:+4841309 | Msa0232550:three_prime_UTR |
| CATATGAAATGACTGGTAAA+TGG | 0.254498 | 2_2:-4841383 | None:intergenic |
| GTAACCAACACTAACATAAA+AGG | 0.301548 | 2_2:-4841238 | None:intergenic |
| AAATATCTAAAGGCGATATT+GGG | 0.318111 | 2_2:+4841310 | Msa0232550:three_prime_UTR |
| CTCTAGTGATCTCTTGCTTC+TGG | 0.322823 | 2_2:-4840505 | None:intergenic |
| CTCGAACTCGTACGTAGAAC+TGG | 0.363873 | 2_2:-4838766 | None:intergenic |
| TTCTCGAGTATTGGGCAGGC+AGG | 0.377149 | 2_2:+4839201 | Msa0232550:CDS |
| ATATGAAATGACTGGTAAAT+GGG | 0.396007 | 2_2:-4841382 | None:intergenic |
| AGAGCTTTCCCTGGCTATAG+TGG | 0.408839 | 2_2:+4839835 | Msa0232550:CDS |
| TAGAGAATGAACAAACGATA+TGG | 0.408890 | 2_2:-4841260 | None:intergenic |
| TGGCGTAGTTTACGTTATCT+TGG | 0.420109 | 2_2:+4839915 | Msa0232550:CDS |
| TGCTATTTGCTTCTTTCTTG+TGG | 0.467457 | 2_2:+4839895 | Msa0232550:CDS |
| CTAACATAAAAGGCATTCAT+AGG | 0.469430 | 2_2:-4841228 | None:intergenic |
| GCTGAAATTGTCTAATTACT+TGG | 0.480632 | 2_2:+4841172 | Msa0232550:three_prime_UTR |
| TTTCGCTCCCCACTATAGCC+AGG | 0.487874 | 2_2:-4839844 | None:intergenic |
| AACAGCAGAGAGAACGTTAA+CGG | 0.491540 | 2_2:-4838887 | None:intergenic |
| TGGTTCTCGTTGAGACTGAA+TGG | 0.505524 | 2_2:+4839077 | Msa0232550:CDS |
| CTCGAGTATTGGGCAGGCAG+GGG | 0.509030 | 2_2:+4839203 | Msa0232550:CDS |
| CACTAGAGAGCAAGCAGCCA+AGG | 0.516229 | 2_2:+4840520 | Msa0232550:CDS |
| TCTCGAGTATTGGGCAGGCA+GGG | 0.517138 | 2_2:+4839202 | Msa0232550:CDS |
| TATTCTGTGTAAATATCTAA+AGG | 0.522284 | 2_2:+4841300 | Msa0232550:three_prime_UTR |
| TTGAAGGGAGTCCTTTGCGT+TGG | 0.532783 | 2_2:+4840464 | Msa0232550:intron |
| ATAAAAGGCATTCATAGGCC+AGG | 0.534215 | 2_2:-4841223 | None:intergenic |
| GAGCTTTCCCTGGCTATAGT+GGG | 0.535147 | 2_2:+4839836 | Msa0232550:CDS |
| TGAAACATCTACAAACTATG+AGG | 0.542229 | 2_2:-4838828 | None:intergenic |
| ACACATCACCTCAAGATCCT+TGG | 0.543552 | 2_2:-4840537 | None:intergenic |
| CAGGTTCTCGAGTATTGGGC+AGG | 0.543908 | 2_2:+4839197 | Msa0232550:intron |
| GCAAGCAGCCAAGGATCTTG+AGG | 0.546149 | 2_2:+4840529 | Msa0232550:CDS |
| ATTGTCTAATTACTTGGTGA+AGG | 0.551948 | 2_2:+4841178 | Msa0232550:three_prime_UTR |
| ACTATAGCCAGGGAAAGCTC+TGG | 0.578804 | 2_2:-4839833 | None:intergenic |
| TTCGCTCCCCACTATAGCCA+GGG | 0.578838 | 2_2:-4839843 | None:intergenic |
| GTGATGACCAGAGCTTTCCC+TGG | 0.579648 | 2_2:+4839826 | Msa0232550:CDS |
| GCAACTGCTTGTGACAGAGT+AGG | 0.591341 | 2_2:+4841128 | Msa0232550:CDS |
| CATCTACAAACTATGAGGAA+AGG | 0.595696 | 2_2:-4838823 | None:intergenic |
| AGAGACAACTAAAGGAAACC+TGG | 0.599545 | 2_2:+4841205 | Msa0232550:three_prime_UTR |
| AAGGCTGAAGAGACAACTAA+AGG | 0.604215 | 2_2:+4841197 | Msa0232550:three_prime_UTR |
| GCAGAGAATAGCAGCTAAAG+CGG | 0.612889 | 2_2:-4838860 | None:intergenic |
| AATATCTAAAGGCGATATTG+GGG | 0.616863 | 2_2:+4841311 | Msa0232550:three_prime_UTR |
| AGCTTTCCCTGGCTATAGTG+GGG | 0.618131 | 2_2:+4839837 | Msa0232550:CDS |
| TCTAAAGGCGATATTGGGGA+TGG | 0.622408 | 2_2:+4841315 | Msa0232550:three_prime_UTR |
| TGACTGGTAAATGGGGAACA+CGG | 0.635021 | 2_2:-4841374 | None:intergenic |
| AGACGTGAAGATGCCTAGAG+AGG | 0.640729 | 2_2:+4838720 | Msa0232550:exon |
| TATGAAATGACTGGTAAATG+GGG | 0.646116 | 2_2:-4841381 | None:intergenic |
| ACGAGTTCGAGCAGTAGCAC+AGG | 0.654238 | 2_2:+4838778 | Msa0232550:CDS |
| AGAGAGGAAGATGAAAAGAA+CGG | 0.670921 | 2_2:+4838736 | Msa0232550:CDS |
| GAGGAAGATGAAAAGAACGG+TGG | 0.735337 | 2_2:+4838739 | Msa0232550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATACTTTAGAAATTAAAT+TGG | + | chr2_2:4839476-4839495 | Msa0232550:intron | 10.0% |
| !!! | AAATCTAAAACAAAAAACAA+TGG | - | chr2_2:4839012-4839031 | None:intergenic | 15.0% |
| !!! | TTCATAATCATGTTTTTTAA+TGG | + | chr2_2:4839287-4839306 | Msa0232550:intron | 15.0% |
| !! | TAGGAGATTAAATTAAATTA+AGG | + | chr2_2:4839512-4839531 | Msa0232550:intron | 15.0% |
| !! | AGGAGATTAAATTAAATTAA+GGG | + | chr2_2:4839513-4839532 | Msa0232550:intron | 15.0% |
| !! | CTATCATATAGTATTATTTA+AGG | - | chr2_2:4839633-4839652 | None:intergenic | 15.0% |
| !!! | TATTGATTTTTCACATTATT+GGG | + | chr2_2:4840123-4840142 | Msa0232550:intron | 15.0% |
| !! | ATTATTAGTTAAAGAAATGA+AGG | + | chr2_2:4840803-4840822 | Msa0232550:intron | 15.0% |
| !!! | ACTTTTTTAGTAAAAGTTTA+TGG | - | chr2_2:4841053-4841072 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTAGATTTTCGA+TGG | + | chr2_2:4839016-4839035 | Msa0232550:intron | 20.0% |
| !!! | ATTAATTTTCTTGCATTTTC+AGG | + | chr2_2:4839178-4839197 | Msa0232550:intron | 20.0% |
| !! | CTAGTAATATTATCAAACAA+GGG | - | chr2_2:4840009-4840028 | None:intergenic | 20.0% |
| !! | TCTAGTAATATTATCAAACA+AGG | - | chr2_2:4840010-4840029 | None:intergenic | 20.0% |
| !!! | TCATATTTTGACTAACATTT+TGG | - | chr2_2:4840035-4840054 | None:intergenic | 20.0% |
| !!! | CTATTGATTTTTCACATTAT+TGG | + | chr2_2:4840122-4840141 | Msa0232550:intron | 20.0% |
| !!! | ATTTCTAAAGTATTAAAGTG+AGG | - | chr2_2:4840162-4840181 | None:intergenic | 20.0% |
| !! | CAACAAATTAACTAAATTTG+CGG | - | chr2_2:4840662-4840681 | None:intergenic | 20.0% |
| !! | CAACAAATTAATATCAGTAA+CGG | - | chr2_2:4840693-4840712 | None:intergenic | 20.0% |
| !! | GAAATTGCAACAATAAAATT+TGG | - | chr2_2:4840758-4840777 | None:intergenic | 20.0% |
| !! | TATTCTGTGTAAATATCTAA+AGG | + | chr2_2:4841300-4841319 | Msa0232550:three_prime_UTR | 20.0% |
| !!! | TACAGTATTTGTGTTTTTGA+AGG | - | chr2_2:4838917-4838936 | None:intergenic | 25.0% |
| ! | CAATTTATTCCTTCATTCAT+CGG | + | chr2_2:4838971-4838990 | Msa0232550:intron | 25.0% |
| !!! | CTTCATAATTAAGTTTTGTC+AGG | + | chr2_2:4839102-4839121 | Msa0232550:CDS | 25.0% |
| ! | TTTCCTTCATTTCATTTCTT+AGG | + | chr2_2:4839133-4839152 | Msa0232550:intron | 25.0% |
| ! | TTGTTACATGTAATTGTGTT+TGG | + | chr2_2:4839262-4839281 | Msa0232550:intron | 25.0% |
| !!! | GAGTTTTTGTTTTGTTTTGA+GGG | - | chr2_2:4839387-4839406 | None:intergenic | 25.0% |
| !!! | AGAGTTTTTGTTTTGTTTTG+AGG | - | chr2_2:4839388-4839407 | None:intergenic | 25.0% |
| ! | AATTGGAGATTATGATACTT+AGG | + | chr2_2:4839493-4839512 | Msa0232550:intron | 25.0% |
| !! | TATTATCAAACAAGGGTTTT+GGG | - | chr2_2:4840002-4840021 | None:intergenic | 25.0% |
| !! | ATATTATCAAACAAGGGTTT+TGG | - | chr2_2:4840003-4840022 | None:intergenic | 25.0% |
| ! | ATAAGTGCAAAGAAGAAAAA+TGG | - | chr2_2:4840202-4840221 | None:intergenic | 25.0% |
| ! | ATATAATCAGATCATGTAGT+TGG | - | chr2_2:4840719-4840738 | None:intergenic | 25.0% |
| ! | TGCAATTTCAAATCAAATGT+TGG | + | chr2_2:4840769-4840788 | Msa0232550:intron | 25.0% |
| ! | TAGCAATAATCATATGGTAT+GGG | - | chr2_2:4840844-4840863 | None:intergenic | 25.0% |
| ! | ATAGCAATAATCATATGGTA+TGG | - | chr2_2:4840845-4840864 | None:intergenic | 25.0% |
| ! | TACAGATAGCAATAATCATA+TGG | - | chr2_2:4840850-4840869 | None:intergenic | 25.0% |
| ! | TAAATATCTAAAGGCGATAT+TGG | + | chr2_2:4841309-4841328 | Msa0232550:three_prime_UTR | 25.0% |
| ! | AAATATCTAAAGGCGATATT+GGG | + | chr2_2:4841310-4841329 | Msa0232550:three_prime_UTR | 25.0% |
| !! | AAATTTTCACATGAATCGAA+AGG | - | chr2_2:4841348-4841367 | None:intergenic | 25.0% |
| !! | TTCGATTCATGTGAAAATTT+TGG | + | chr2_2:4841348-4841367 | Msa0232550:three_prime_UTR | 25.0% |
| !! | TCGATTCATGTGAAAATTTT+GGG | + | chr2_2:4841349-4841368 | Msa0232550:three_prime_UTR | 25.0% |
| TGAAACATCTACAAACTATG+AGG | - | chr2_2:4838831-4838850 | None:intergenic | 30.0% | |
| GATCCTAAGAAATGAAATGA+AGG | - | chr2_2:4839139-4839158 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTTGTTTTGAGGGA+AGG | - | chr2_2:4839383-4839402 | None:intergenic | 30.0% |
| !! | AGTTTTTCAACTCGAAACTT+AGG | + | chr2_2:4839560-4839579 | Msa0232550:intron | 30.0% |
| !!! | GTTTTGTTTCTTACTGAGTT+TGG | + | chr2_2:4839780-4839799 | Msa0232550:intron | 30.0% |
| ! | TGAAATTTTCAAAGCGAATC+TGG | - | chr2_2:4840235-4840254 | None:intergenic | 30.0% |
| ! | AGCTCTTATTTGATATACCT+TGG | + | chr2_2:4840297-4840316 | Msa0232550:intron | 30.0% |
| ! | GCTCTTATTTGATATACCTT+GGG | + | chr2_2:4840298-4840317 | Msa0232550:intron | 30.0% |
| !! | GATTCTTTAGGACATAATTG+AGG | - | chr2_2:4840393-4840412 | None:intergenic | 30.0% |
| ATGCAATGAAGAGATTCTTT+AGG | - | chr2_2:4840405-4840424 | None:intergenic | 30.0% | |
| ! | TTAGTGCAATGTTTTGTCAT+TGG | - | chr2_2:4840639-4840658 | None:intergenic | 30.0% |
| ! | AATTTGGAGCAAGGAAATAT+GGG | - | chr2_2:4840742-4840761 | None:intergenic | 30.0% |
| ! | AAATTTGGAGCAAGGAAATA+TGG | - | chr2_2:4840743-4840762 | None:intergenic | 30.0% |
| ! | CAACAATAAAATTTGGAGCA+AGG | - | chr2_2:4840751-4840770 | None:intergenic | 30.0% |
| TAGTTAAAGAAATGAAGGCT+AGG | + | chr2_2:4840808-4840827 | Msa0232550:intron | 30.0% | |
| ! | TTTGAAACAATGTGTGAACA+TGG | + | chr2_2:4840870-4840889 | Msa0232550:intron | 30.0% |
| AAAGTGTACAAACTCTAAAC+AGG | - | chr2_2:4840932-4840951 | None:intergenic | 30.0% | |
| GCTGAAATTGTCTAATTACT+TGG | + | chr2_2:4841172-4841191 | Msa0232550:three_prime_UTR | 30.0% | |
| ! | ATTGTCTAATTACTTGGTGA+AGG | + | chr2_2:4841178-4841197 | Msa0232550:three_prime_UTR | 30.0% |
| !! | CTAACATAAAAGGCATTCAT+AGG | - | chr2_2:4841231-4841250 | None:intergenic | 30.0% |
| ! | AATGCCTTTTATGTTAGTGT+TGG | + | chr2_2:4841234-4841253 | Msa0232550:three_prime_UTR | 30.0% |
| GTAACCAACACTAACATAAA+AGG | - | chr2_2:4841241-4841260 | None:intergenic | 30.0% | |
| TAGAGAATGAACAAACGATA+TGG | - | chr2_2:4841263-4841282 | None:intergenic | 30.0% | |
| AATATCTAAAGGCGATATTG+GGG | + | chr2_2:4841311-4841330 | Msa0232550:three_prime_UTR | 30.0% | |
| ! | TTCTTTTCATCTTCCTCTCT+AGG | - | chr2_2:4838736-4838755 | None:intergenic | 35.0% |
| AGAGAGGAAGATGAAAAGAA+CGG | + | chr2_2:4838736-4838755 | Msa0232550:CDS | 35.0% | |
| CATCTACAAACTATGAGGAA+AGG | - | chr2_2:4838826-4838845 | None:intergenic | 35.0% | |
| GCGAAAAGAAGAAAGAAAGA+AGG | - | chr2_2:4838952-4838971 | None:intergenic | 35.0% | |
| CACAAAAATCGCAATGAGAA+CGG | - | chr2_2:4839059-4839078 | None:intergenic | 35.0% | |
| !!! | ATTTTCAGGTTCTCGAGTAT+TGG | + | chr2_2:4839192-4839211 | Msa0232550:intron | 35.0% |
| !!! | TTTTCAGGTTCTCGAGTATT+GGG | + | chr2_2:4839193-4839212 | Msa0232550:intron | 35.0% |
| ! | ATGTAACTTGTGACTTTGCA+AGG | - | chr2_2:4839429-4839448 | None:intergenic | 35.0% |
| AAGGAAAGACTACATATGTG+TGG | - | chr2_2:4839614-4839633 | None:intergenic | 35.0% | |
| AAACACGAACCTAGAATGTT+TGG | + | chr2_2:4839689-4839708 | Msa0232550:intron | 35.0% | |
| AACACGAACCTAGAATGTTT+GGG | + | chr2_2:4839690-4839709 | Msa0232550:intron | 35.0% | |
| !! | GGTTTTTCTTTTTTGCAGTG+CGG | + | chr2_2:4839801-4839820 | Msa0232550:intron | 35.0% |
| ! | TGCTATTTGCTTCTTTCTTG+TGG | + | chr2_2:4839895-4839914 | Msa0232550:CDS | 35.0% |
| TAAAGTGAGGACAACATTCA+AGG | - | chr2_2:4840149-4840168 | None:intergenic | 35.0% | |
| !!! | TTCCTCACCTTTTTTGTTGT+TGG | + | chr2_2:4840353-4840372 | Msa0232550:intron | 35.0% |
| ACAGTCACCAACAACAAAAA+AGG | - | chr2_2:4840363-4840382 | None:intergenic | 35.0% | |
| TAGGACATAATTGAGGAGTA+AGG | - | chr2_2:4840386-4840405 | None:intergenic | 35.0% | |
| ! | TTGTTTGTATTGCCGTTTGA+AGG | + | chr2_2:4840448-4840467 | Msa0232550:intron | 35.0% |
| ! | TGTTTGTATTGCCGTTTGAA+GGG | + | chr2_2:4840449-4840468 | Msa0232550:intron | 35.0% |
| !!! | GTTTTAGAAAACCAACGCAA+AGG | - | chr2_2:4840478-4840497 | None:intergenic | 35.0% |
| ! | TGTTTTGTCATTGGAACCAA+GGG | - | chr2_2:4840630-4840649 | None:intergenic | 35.0% |
| ! | ATGTTTTGTCATTGGAACCA+AGG | - | chr2_2:4840631-4840650 | None:intergenic | 35.0% |
| ! | AGAAATGAAGGCTAGGATTT+TGG | + | chr2_2:4840815-4840834 | Msa0232550:intron | 35.0% |
| ! | GAAATGAAGGCTAGGATTTT+GGG | + | chr2_2:4840816-4840835 | Msa0232550:intron | 35.0% |
| ! | AAATGAAGGCTAGGATTTTG+GGG | + | chr2_2:4840817-4840836 | Msa0232550:intron | 35.0% |
| TATGAGCGAATACATAAACG+AGG | - | chr2_2:4840978-4840997 | None:intergenic | 35.0% | |
| AACAGCAGAGAGAACGTTAA+CGG | - | chr2_2:4838890-4838909 | None:intergenic | 40.0% | |
| ! | CGTTCTCATTGCGATTTTTG+TGG | + | chr2_2:4839057-4839076 | Msa0232550:CDS | 40.0% |
| GCATTACACCCAAACATTCT+AGG | - | chr2_2:4839701-4839720 | None:intergenic | 40.0% | |
| TTGGGTGTAATGCAGAGAAT+TGG | + | chr2_2:4839708-4839727 | Msa0232550:intron | 40.0% | |
| TGGCGTAGTTTACGTTATCT+TGG | + | chr2_2:4839915-4839934 | Msa0232550:CDS | 40.0% | |
| !! | ATGTTTTGAACTCAGACCCA+AGG | - | chr2_2:4840317-4840336 | None:intergenic | 40.0% |
| CACCAACAACAAAAAAGGTG+AGG | - | chr2_2:4840358-4840377 | None:intergenic | 40.0% | |
| AGCGAATACATAAACGAGGA+TGG | - | chr2_2:4840974-4840993 | None:intergenic | 40.0% | |
| TGCTTCTATGAACACTTGAC+AGG | + | chr2_2:4841077-4841096 | Msa0232550:intron | 40.0% | |
| TATGAACACTTGACAGGAGT+TGG | + | chr2_2:4841083-4841102 | Msa0232550:intron | 40.0% | |
| AAGGCTGAAGAGACAACTAA+AGG | + | chr2_2:4841197-4841216 | Msa0232550:three_prime_UTR | 40.0% | |
| AGAGACAACTAAAGGAAACC+TGG | + | chr2_2:4841205-4841224 | Msa0232550:three_prime_UTR | 40.0% | |
| !! | ATAAAAGGCATTCATAGGCC+AGG | - | chr2_2:4841226-4841245 | None:intergenic | 40.0% |
| GAGGAAGATGAAAAGAACGG+TGG | + | chr2_2:4838739-4838758 | Msa0232550:CDS | 45.0% | |
| GCAGAGAATAGCAGCTAAAG+CGG | - | chr2_2:4838863-4838882 | None:intergenic | 45.0% | |
| GCGATGATTCCGATGAATGA+AGG | - | chr2_2:4838983-4839002 | None:intergenic | 45.0% | |
| TGGTTCTCGTTGAGACTGAA+TGG | + | chr2_2:4839077-4839096 | Msa0232550:CDS | 45.0% | |
| CTCTAGTGATCTCTTGCTTC+TGG | - | chr2_2:4840508-4840527 | None:intergenic | 45.0% | |
| ACACATCACCTCAAGATCCT+TGG | - | chr2_2:4840540-4840559 | None:intergenic | 45.0% | |
| CTATAGTTCTCTGTCTCCCT+TGG | + | chr2_2:4840611-4840630 | Msa0232550:intron | 45.0% | |
| TCTAAAGGCGATATTGGGGA+TGG | + | chr2_2:4841315-4841334 | Msa0232550:three_prime_UTR | 45.0% | |
| AGACGTGAAGATGCCTAGAG+AGG | + | chr2_2:4838720-4838739 | Msa0232550:exon | 50.0% | |
| CTCGAACTCGTACGTAGAAC+TGG | - | chr2_2:4838769-4838788 | None:intergenic | 50.0% | |
| ACTATAGCCAGGGAAAGCTC+TGG | - | chr2_2:4839836-4839855 | None:intergenic | 50.0% | |
| AGAGCTTTCCCTGGCTATAG+TGG | + | chr2_2:4839835-4839854 | Msa0232550:CDS | 50.0% | |
| GAGCTTTCCCTGGCTATAGT+GGG | + | chr2_2:4839836-4839855 | Msa0232550:CDS | 50.0% | |
| AGCTTTCCCTGGCTATAGTG+GGG | + | chr2_2:4839837-4839856 | Msa0232550:CDS | 50.0% | |
| CGCAAAGGACTCCCTTCAAA+CGG | - | chr2_2:4840463-4840482 | None:intergenic | 50.0% | |
| TTGAAGGGAGTCCTTTGCGT+TGG | + | chr2_2:4840464-4840483 | Msa0232550:intron | 50.0% | |
| GCAACTGCTTGTGACAGAGT+AGG | + | chr2_2:4841128-4841147 | Msa0232550:CDS | 50.0% | |
| ACGAGTTCGAGCAGTAGCAC+AGG | + | chr2_2:4838778-4838797 | Msa0232550:CDS | 55.0% | |
| !! | CAGGTTCTCGAGTATTGGGC+AGG | + | chr2_2:4839197-4839216 | Msa0232550:intron | 55.0% |
| !! | TTCTCGAGTATTGGGCAGGC+AGG | + | chr2_2:4839201-4839220 | Msa0232550:CDS | 55.0% |
| !! | TCTCGAGTATTGGGCAGGCA+GGG | + | chr2_2:4839202-4839221 | Msa0232550:CDS | 55.0% |
| GTGATGACCAGAGCTTTCCC+TGG | + | chr2_2:4839826-4839845 | Msa0232550:CDS | 55.0% | |
| TTCGCTCCCCACTATAGCCA+GGG | - | chr2_2:4839846-4839865 | None:intergenic | 55.0% | |
| TTTCGCTCCCCACTATAGCC+AGG | - | chr2_2:4839847-4839866 | None:intergenic | 55.0% | |
| CACTAGAGAGCAAGCAGCCA+AGG | + | chr2_2:4840520-4840539 | Msa0232550:CDS | 55.0% | |
| GCAAGCAGCCAAGGATCTTG+AGG | + | chr2_2:4840529-4840548 | Msa0232550:CDS | 55.0% | |
| !! | CTCGAGTATTGGGCAGGCAG+GGG | + | chr2_2:4839203-4839222 | Msa0232550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 4838680 | 4841391 | 4838680 | ID=Msa0232550;Name=Msa0232550 |
| chr2_2 | mRNA | 4838680 | 4841391 | 4838680 | ID=Msa0232550-mRNA-1;Parent=Msa0232550;Name=Msa0232550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=50|1|1|1|1|1|6|242|196 |
| chr2_2 | exon | 4838680 | 4838933 | 4838680 | ID=Msa0232550-mRNA-1:exon:2059;Parent=Msa0232550-mRNA-1 |
| chr2_2 | exon | 4839028 | 4839123 | 4839028 | ID=Msa0232550-mRNA-1:exon:2060;Parent=Msa0232550-mRNA-1 |
| chr2_2 | exon | 4839200 | 4839240 | 4839200 | ID=Msa0232550-mRNA-1:exon:2061;Parent=Msa0232550-mRNA-1 |
| chr2_2 | exon | 4839819 | 4839936 | 4839819 | ID=Msa0232550-mRNA-1:exon:2062;Parent=Msa0232550-mRNA-1 |
| chr2_2 | exon | 4840470 | 4840550 | 4840470 | ID=Msa0232550-mRNA-1:exon:2063;Parent=Msa0232550-mRNA-1 |
| chr2_2 | exon | 4841099 | 4841391 | 4841099 | ID=Msa0232550-mRNA-1:exon:2064;Parent=Msa0232550-mRNA-1 |
| chr2_2 | five_prime_UTR | 4838680 | 4838729 | 4838680 | ID=Msa0232550-mRNA-1:five_prime_utr;Parent=Msa0232550-mRNA-1 |
| chr2_2 | CDS | 4838730 | 4838933 | 4838730 | ID=Msa0232550-mRNA-1:cds;Parent=Msa0232550-mRNA-1 |
| chr2_2 | CDS | 4839028 | 4839123 | 4839028 | ID=Msa0232550-mRNA-1:cds;Parent=Msa0232550-mRNA-1 |
| chr2_2 | CDS | 4839200 | 4839240 | 4839200 | ID=Msa0232550-mRNA-1:cds;Parent=Msa0232550-mRNA-1 |
| chr2_2 | CDS | 4839819 | 4839936 | 4839819 | ID=Msa0232550-mRNA-1:cds;Parent=Msa0232550-mRNA-1 |
| chr2_2 | CDS | 4840470 | 4840550 | 4840470 | ID=Msa0232550-mRNA-1:cds;Parent=Msa0232550-mRNA-1 |
| chr2_2 | CDS | 4841099 | 4841149 | 4841099 | ID=Msa0232550-mRNA-1:cds;Parent=Msa0232550-mRNA-1 |
| chr2_2 | three_prime_UTR | 4841150 | 4841391 | 4841150 | ID=Msa0232550-mRNA-1:three_prime_utr;Parent=Msa0232550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
