Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216580 | XP_013458197.1 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 5.06e-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216580 | sp|Q6L4D2|PM19L_ORYSJ | 40.816 | 147 | 67 | 3 | 13 | 155 | 12 | 142 | 1.79e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216580 | I3SV18 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 2.42e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064120 | Msa1216580 | 0.802151 | 6.428240e-49 | -8.615850e-47 |
| Msa0155180 | Msa1216580 | 0.803446 | 3.473174e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216580 | MtrunA17_Chr4g0065951 | 98.780 | 164 | 2 | 0 | 1 | 164 | 1 | 164 | 4.65e-115 | 322 |
| Msa1216580 | MtrunA17_Chr2g0303931 | 50.340 | 147 | 73 | 0 | 1 | 147 | 1 | 147 | 2.61e-40 | 133 |
| Msa1216580 | MtrunA17_Chr6g0478031 | 47.020 | 151 | 80 | 0 | 7 | 157 | 2 | 152 | 3.24e-40 | 133 |
| Msa1216580 | MtrunA17_Chr1g0199041 | 38.926 | 149 | 67 | 4 | 13 | 155 | 12 | 142 | 5.31e-24 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216580 | AT5G18970.1 | 69.620 | 158 | 48 | 0 | 1 | 158 | 1 | 158 | 2.93e-79 | 233 |
| Msa1216580 | AT5G46530.1 | 46.939 | 147 | 78 | 0 | 7 | 153 | 7 | 153 | 3.65e-41 | 135 |
| Msa1216580 | AT1G29520.1 | 49.020 | 153 | 78 | 0 | 1 | 153 | 1 | 153 | 2.46e-39 | 131 |
| Msa1216580 | AT1G04560.1 | 39.490 | 157 | 81 | 2 | 1 | 156 | 1 | 144 | 6.32e-26 | 97.8 |
Find 51 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCATTGGAAAGTATAT+TGG | 0.215194 | 8_1:-78342445 | None:intergenic |
| ACACTAGATTGAGGGTTAAA+AGG | 0.282593 | 8_1:-78341969 | None:intergenic |
| ATGGCTGCAGCATTTAAATT+AGG | 0.305394 | 8_1:-78342568 | None:intergenic |
| TTCCCATTGGAAAGTATATT+GGG | 0.325375 | 8_1:-78342444 | None:intergenic |
| ATAATCTTCACTCTAATTGC+TGG | 0.330951 | 8_1:+78342487 | Msa1216580:CDS |
| GCACGACTGTTATCCATGTT+GGG | 0.345119 | 8_1:+78343102 | Msa1216580:CDS |
| ACTCTAATTGCTGGTGTTGT+GGG | 0.351945 | 8_1:+78342496 | Msa1216580:CDS |
| GGTTTCACTACATCAGTAAC+TGG | 0.354086 | 8_1:+78342517 | Msa1216580:CDS |
| CCAATGGGAAACATGACAAC+TGG | 0.360214 | 8_1:+78342457 | Msa1216580:CDS |
| CACTCTAATTGCTGGTGTTG+TGG | 0.382264 | 8_1:+78342495 | Msa1216580:CDS |
| TTGTGATTGTAATTGCTTCA+TGG | 0.397741 | 8_1:+78342001 | Msa1216580:CDS |
| TGTTGTTTGAGGATGGCTTC+CGG | 0.409237 | 8_1:+78341922 | Msa1216580:exon |
| TGCACGACTGTTATCCATGT+TGG | 0.425299 | 8_1:+78343101 | Msa1216580:CDS |
| CAATTATTGTGATTGTTTCA+AGG | 0.431523 | 8_1:-78343058 | Msa1216590:intron |
| AATTATTGTGATTGTTTCAA+GGG | 0.436827 | 8_1:-78343057 | Msa1216590:intron |
| AACTTGATCATTGTTGTTTG+AGG | 0.443724 | 8_1:+78341911 | Msa1216580:five_prime_UTR |
| TTAAATTAGGAGCATTCCAT+TGG | 0.456921 | 8_1:-78342555 | None:intergenic |
| CCAGTTGTCATGTTTCCCAT+TGG | 0.459302 | 8_1:-78342457 | None:intergenic |
| GGCACTCACTCTGTTAGCCA+TGG | 0.473924 | 8_1:+78342609 | Msa1216580:CDS |
| CCATGTCTTCACTGACAACA+TGG | 0.491482 | 8_1:+78342587 | Msa1216580:CDS |
| TTCCCAATATACTTTCCAAT+GGG | 0.492290 | 8_1:+78342442 | Msa1216580:CDS |
| TGTGATTGTAATTGCTTCAT+GGG | 0.493799 | 8_1:+78342002 | Msa1216580:CDS |
| GCACTCACTCTGTTAGCCAT+GGG | 0.500737 | 8_1:+78342610 | Msa1216580:CDS |
| ATCATGGCATTCAAAGGTCT+AGG | 0.516571 | 8_1:+78342031 | Msa1216580:CDS |
| GCTTCATGGGCAATGAATCA+TGG | 0.517487 | 8_1:+78342015 | Msa1216580:CDS |
| TGAAATACAACACTAGATTG+AGG | 0.520580 | 8_1:-78341978 | None:intergenic |
| GGATCAAAATCAGTAGCCTT+AGG | 0.522274 | 8_1:+78341946 | Msa1216580:CDS |
| GCAAAGAGATTGAACGTGGT+TGG | 0.522540 | 8_1:+78342770 | Msa1216580:CDS |
| ATTCCCAATATACTTTCCAA+TGG | 0.522562 | 8_1:+78342441 | Msa1216580:CDS |
| GAAATACAACACTAGATTGA+GGG | 0.526099 | 8_1:-78341977 | None:intergenic |
| ATTCAAAGGTCTAGGGAAGC+AGG | 0.526713 | 8_1:+78342039 | Msa1216580:CDS |
| GTATAGTTTCAACCTTCAGT+TGG | 0.529417 | 8_1:+78343149 | Msa1216580:exon |
| TGGGAATTCATATATGAAAG+TGG | 0.541454 | 8_1:-78343174 | Msa1216590:intron |
| TATATTGGGAATATGTGAGC+TGG | 0.546271 | 8_1:-78342430 | None:intergenic |
| TGATCATTGTTGTTTGAGGA+TGG | 0.551046 | 8_1:+78341915 | Msa1216580:exon |
| CAATGAATCATGGCATTCAA+AGG | 0.553913 | 8_1:+78342025 | Msa1216580:CDS |
| CACGACTGTTATCCATGTTG+GGG | 0.554748 | 8_1:+78343103 | Msa1216580:CDS |
| ATTGAGGGTTAAAAGGCCTA+AGG | 0.558428 | 8_1:-78341962 | None:intergenic |
| ATGAAAGTGGCTCCAACTGA+AGG | 0.577209 | 8_1:-78343161 | Msa1216590:intron |
| CCATGTTGTCAGTGAAGACA+TGG | 0.585540 | 8_1:-78342587 | None:intergenic |
| CGTGCATAACAGTTGTGTTG+CGG | 0.600936 | 8_1:-78343084 | Msa1216590:intron |
| TCATGGCATTCAAAGGTCTA+GGG | 0.602141 | 8_1:+78342032 | Msa1216580:CDS |
| CACTCACTCTGTTAGCCATG+GGG | 0.605084 | 8_1:+78342611 | Msa1216580:CDS |
| TGGTTGGACTGATTCAAACC+TGG | 0.614574 | 8_1:+78342786 | Msa1216580:CDS |
| GAACTTCTGAAGCCCCAACA+TGG | 0.616123 | 8_1:-78343115 | Msa1216590:intron |
| TGGGAATATGTGAGCTGGAG+TGG | 0.616192 | 8_1:-78342425 | None:intergenic |
| GATTGAATAACATATTCCAA+TGG | 0.624471 | 8_1:+78342539 | Msa1216580:CDS |
| TGTTTGAGGATGGCTTCCGG+AGG | 0.647389 | 8_1:+78341925 | Msa1216580:exon |
| CATGTCTTCACTGACAACAT+GGG | 0.663676 | 8_1:+78342588 | Msa1216580:CDS |
| TGAAACTATACTCTTCTCTG+TGG | 0.718012 | 8_1:-78343137 | Msa1216590:intron |
| GCATGCAAAGAGATTGAACG+TGG | 0.746939 | 8_1:+78342766 | Msa1216580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATCAATATTTTGTTT+TGG | - | chr8_1:78342343-78342362 | None:intergenic | 10.0% |
| !!! | AAATTATCAATATTTTGTTT+TGG | - | chr8_1:78342343-78342362 | None:intergenic | 10.0% |
| !!! | TTTTAAAGCTAAAAAAAACT+TGG | - | chr8_1:78341893-78341912 | None:intergenic | 15.0% |
| !! | AACTATATGTAATCAAAATA+GGG | - | chr8_1:78342655-78342674 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTATTTTAC+TGG | + | chr8_1:78342957-78342976 | Msa1216580:intron | 15.0% |
| !!! | AACAACATATTCATTATTTT+TGG | + | chr8_1:78343012-78343031 | Msa1216580:intron | 15.0% |
| !!! | TTTTTGTGTAAAAAAATCAA+AGG | - | chr8_1:78343243-78343262 | Msa1216590:intron | 15.0% |
| !!! | AAAAATTGTTTTAGTTTCTT+TGG | + | chr8_1:78343258-78343277 | Msa1216580:three_prime_UTR | 15.0% |
| !!! | TTTTAAAGCTAAAAAAAACT+TGG | - | chr8_1:78341893-78341912 | None:intergenic | 15.0% |
| !! | AACTATATGTAATCAAAATA+GGG | - | chr8_1:78342655-78342674 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTATTTTAC+TGG | + | chr8_1:78342957-78342976 | Msa1216580:intron | 15.0% |
| !!! | AACAACATATTCATTATTTT+TGG | + | chr8_1:78343012-78343031 | Msa1216580:intron | 15.0% |
| !!! | TTTTTGTGTAAAAAAATCAA+AGG | - | chr8_1:78343243-78343262 | Msa1216590:intron | 15.0% |
| !!! | AAAAATTGTTTTAGTTTCTT+TGG | + | chr8_1:78343258-78343277 | Msa1216580:three_prime_UTR | 15.0% |
| !!! | ACGTTAATTTTTTATTTGCA+TGG | - | chr8_1:78342132-78342151 | None:intergenic | 20.0% |
| !!! | TCCAAACAATTTTTTTTACA+AGG | + | chr8_1:78342263-78342282 | Msa1216580:intron | 20.0% |
| !! | TCCTTGTAAAAAAAATTGTT+TGG | - | chr8_1:78342267-78342286 | None:intergenic | 20.0% |
| !!! | TATAATTTGTTGACTTGAAT+TGG | + | chr8_1:78342376-78342395 | Msa1216580:intron | 20.0% |
| !! | ACTATATGTAATCAAAATAG+GGG | - | chr8_1:78342654-78342673 | None:intergenic | 20.0% |
| !! | GAACTATATGTAATCAAAAT+AGG | - | chr8_1:78342656-78342675 | None:intergenic | 20.0% |
| !! | TATTACAATGTATTTGGATT+GGG | - | chr8_1:78342719-78342738 | None:intergenic | 20.0% |
| !! | ATATTACAATGTATTTGGAT+TGG | - | chr8_1:78342720-78342739 | None:intergenic | 20.0% |
| !! | AATCCAAATACATTGTAATA+TGG | + | chr8_1:78342719-78342738 | Msa1216580:intron | 20.0% |
| !! | AATTATTGTGATTGTTTCAA+GGG | - | chr8_1:78343060-78343079 | Msa1216590:intron | 20.0% |
| !!! | TTGAAGAATTTTTTTCTTCT+GGG | - | chr8_1:78343196-78343215 | Msa1216590:intron | 20.0% |
| !!! | ATTGAAGAATTTTTTTCTTC+TGG | - | chr8_1:78343197-78343216 | Msa1216590:intron | 20.0% |
| !! | CATAAAAAAACAATATGATG+TGG | - | chr8_1:78343362-78343381 | Msa1216590:intron | 20.0% |
| !!! | ACGTTAATTTTTTATTTGCA+TGG | - | chr8_1:78342132-78342151 | None:intergenic | 20.0% |
| !!! | TCCAAACAATTTTTTTTACA+AGG | + | chr8_1:78342263-78342282 | Msa1216580:intron | 20.0% |
| !! | TCCTTGTAAAAAAAATTGTT+TGG | - | chr8_1:78342267-78342286 | None:intergenic | 20.0% |
| !!! | TATAATTTGTTGACTTGAAT+TGG | + | chr8_1:78342376-78342395 | Msa1216580:intron | 20.0% |
| !! | ACTATATGTAATCAAAATAG+GGG | - | chr8_1:78342654-78342673 | None:intergenic | 20.0% |
| !! | GAACTATATGTAATCAAAAT+AGG | - | chr8_1:78342656-78342675 | None:intergenic | 20.0% |
| !! | TATTACAATGTATTTGGATT+GGG | - | chr8_1:78342719-78342738 | None:intergenic | 20.0% |
| !! | ATATTACAATGTATTTGGAT+TGG | - | chr8_1:78342720-78342739 | None:intergenic | 20.0% |
| !! | AATCCAAATACATTGTAATA+TGG | + | chr8_1:78342719-78342738 | Msa1216580:intron | 20.0% |
| !! | AATTATTGTGATTGTTTCAA+GGG | - | chr8_1:78343060-78343079 | Msa1216590:intron | 20.0% |
| !!! | TTGAAGAATTTTTTTCTTCT+GGG | - | chr8_1:78343196-78343215 | Msa1216590:intron | 20.0% |
| !!! | ATTGAAGAATTTTTTTCTTC+TGG | - | chr8_1:78343197-78343216 | Msa1216590:intron | 20.0% |
| !! | CATAAAAAAACAATATGATG+TGG | - | chr8_1:78343362-78343381 | Msa1216590:intron | 20.0% |
| ! | GATTGAATAACATATTCCAA+TGG | + | chr8_1:78342539-78342558 | Msa1216580:CDS | 25.0% |
| ! | CTATATGTAATCAAAATAGG+GGG | - | chr8_1:78342653-78342672 | None:intergenic | 25.0% |
| ! | CATCCATATTACAATGTATT+TGG | - | chr8_1:78342725-78342744 | None:intergenic | 25.0% |
| !!! | ACTCTATTTCTAGTGTAATT+TGG | + | chr8_1:78342882-78342901 | Msa1216580:intron | 25.0% |
| !! | TAATTTGGTAGCTAAGAAAA+TGG | + | chr8_1:78342897-78342916 | Msa1216580:intron | 25.0% |
| ! | CAATTATTGTGATTGTTTCA+AGG | - | chr8_1:78343061-78343080 | Msa1216590:intron | 25.0% |
| ! | GATTGAATAACATATTCCAA+TGG | + | chr8_1:78342539-78342558 | Msa1216580:CDS | 25.0% |
| ! | CTATATGTAATCAAAATAGG+GGG | - | chr8_1:78342653-78342672 | None:intergenic | 25.0% |
| ! | CATCCATATTACAATGTATT+TGG | - | chr8_1:78342725-78342744 | None:intergenic | 25.0% |
| !!! | ACTCTATTTCTAGTGTAATT+TGG | + | chr8_1:78342882-78342901 | Msa1216580:intron | 25.0% |
| !! | TAATTTGGTAGCTAAGAAAA+TGG | + | chr8_1:78342897-78342916 | Msa1216580:intron | 25.0% |
| ! | CAATTATTGTGATTGTTTCA+AGG | - | chr8_1:78343061-78343080 | Msa1216590:intron | 25.0% |
| GCTAAAAAAAACTTGGATTG+TGG | - | chr8_1:78341886-78341905 | None:intergenic | 30.0% | |
| !! | AACTTGATCATTGTTGTTTG+AGG | + | chr8_1:78341911-78341930 | Msa1216580:five_prime_UTR | 30.0% |
| GAAATACAACACTAGATTGA+GGG | - | chr8_1:78341980-78341999 | None:intergenic | 30.0% | |
| TGAAATACAACACTAGATTG+AGG | - | chr8_1:78341981-78342000 | None:intergenic | 30.0% | |
| TTGTGATTGTAATTGCTTCA+TGG | + | chr8_1:78342001-78342020 | Msa1216580:CDS | 30.0% | |
| TGTGATTGTAATTGCTTCAT+GGG | + | chr8_1:78342002-78342021 | Msa1216580:CDS | 30.0% | |
| ! | CTCAAGCAAAATAATTTGCA+GGG | - | chr8_1:78342103-78342122 | None:intergenic | 30.0% |
| ! | ACTCAAGCAAAATAATTTGC+AGG | - | chr8_1:78342104-78342123 | None:intergenic | 30.0% |
| GTCATATGTCGTGATTATAT+TGG | + | chr8_1:78342184-78342203 | Msa1216580:intron | 30.0% | |
| ATTCCCAATATACTTTCCAA+TGG | + | chr8_1:78342441-78342460 | Msa1216580:CDS | 30.0% | |
| TTCCCAATATACTTTCCAAT+GGG | + | chr8_1:78342442-78342461 | Msa1216580:CDS | 30.0% | |
| ! | TTCCCATTGGAAAGTATATT+GGG | - | chr8_1:78342447-78342466 | None:intergenic | 30.0% |
| ! | TTTCCCATTGGAAAGTATAT+TGG | - | chr8_1:78342448-78342467 | None:intergenic | 30.0% |
| ATAATCTTCACTCTAATTGC+TGG | + | chr8_1:78342487-78342506 | Msa1216580:CDS | 30.0% | |
| !! | TTAAATTAGGAGCATTCCAT+TGG | - | chr8_1:78342558-78342577 | None:intergenic | 30.0% |
| AAAATAGGGGGATTAGAATA+AGG | - | chr8_1:78342641-78342660 | None:intergenic | 30.0% | |
| ATGCAAATCTGCAAGAAAAT+TGG | - | chr8_1:78342750-78342769 | None:intergenic | 30.0% | |
| GATATATAAAGAAGCTTACC+AGG | - | chr8_1:78342807-78342826 | Msa1216590:intron | 30.0% | |
| TGGGAATTCATATATGAAAG+TGG | - | chr8_1:78343177-78343196 | Msa1216590:intron | 30.0% | |
| GCTAAAAAAAACTTGGATTG+TGG | - | chr8_1:78341886-78341905 | None:intergenic | 30.0% | |
| !! | AACTTGATCATTGTTGTTTG+AGG | + | chr8_1:78341911-78341930 | Msa1216580:five_prime_UTR | 30.0% |
| GAAATACAACACTAGATTGA+GGG | - | chr8_1:78341980-78341999 | None:intergenic | 30.0% | |
| TGAAATACAACACTAGATTG+AGG | - | chr8_1:78341981-78342000 | None:intergenic | 30.0% | |
| TTGTGATTGTAATTGCTTCA+TGG | + | chr8_1:78342001-78342020 | Msa1216580:CDS | 30.0% | |
| TGTGATTGTAATTGCTTCAT+GGG | + | chr8_1:78342002-78342021 | Msa1216580:CDS | 30.0% | |
| ! | CTCAAGCAAAATAATTTGCA+GGG | - | chr8_1:78342103-78342122 | None:intergenic | 30.0% |
| ! | ACTCAAGCAAAATAATTTGC+AGG | - | chr8_1:78342104-78342123 | None:intergenic | 30.0% |
| GTCATATGTCGTGATTATAT+TGG | + | chr8_1:78342184-78342203 | Msa1216580:intron | 30.0% | |
| ATTCCCAATATACTTTCCAA+TGG | + | chr8_1:78342441-78342460 | Msa1216580:CDS | 30.0% | |
| TTCCCAATATACTTTCCAAT+GGG | + | chr8_1:78342442-78342461 | Msa1216580:CDS | 30.0% | |
| ! | TTCCCATTGGAAAGTATATT+GGG | - | chr8_1:78342447-78342466 | None:intergenic | 30.0% |
| ! | TTTCCCATTGGAAAGTATAT+TGG | - | chr8_1:78342448-78342467 | None:intergenic | 30.0% |
| ATAATCTTCACTCTAATTGC+TGG | + | chr8_1:78342487-78342506 | Msa1216580:CDS | 30.0% | |
| !! | TTAAATTAGGAGCATTCCAT+TGG | - | chr8_1:78342558-78342577 | None:intergenic | 30.0% |
| AAAATAGGGGGATTAGAATA+AGG | - | chr8_1:78342641-78342660 | None:intergenic | 30.0% | |
| ATGCAAATCTGCAAGAAAAT+TGG | - | chr8_1:78342750-78342769 | None:intergenic | 30.0% | |
| GATATATAAAGAAGCTTACC+AGG | - | chr8_1:78342807-78342826 | Msa1216590:intron | 30.0% | |
| TGGGAATTCATATATGAAAG+TGG | - | chr8_1:78343177-78343196 | Msa1216590:intron | 30.0% | |
| !! | TGATCATTGTTGTTTGAGGA+TGG | + | chr8_1:78341915-78341934 | Msa1216580:exon | 35.0% |
| ACACTAGATTGAGGGTTAAA+AGG | - | chr8_1:78341972-78341991 | None:intergenic | 35.0% | |
| CAATGAATCATGGCATTCAA+AGG | + | chr8_1:78342025-78342044 | Msa1216580:CDS | 35.0% | |
| CATCAATTTATTGAGCCACT+TGG | + | chr8_1:78342160-78342179 | Msa1216580:intron | 35.0% | |
| TATATTGGGAATATGTGAGC+TGG | - | chr8_1:78342433-78342452 | None:intergenic | 35.0% | |
| ATGGCTGCAGCATTTAAATT+AGG | - | chr8_1:78342571-78342590 | None:intergenic | 35.0% | |
| TGAAACTATACTCTTCTCTG+TGG | - | chr8_1:78343140-78343159 | Msa1216590:intron | 35.0% | |
| GTATAGTTTCAACCTTCAGT+TGG | + | chr8_1:78343149-78343168 | Msa1216580:exon | 35.0% | |
| !! | TGATCATTGTTGTTTGAGGA+TGG | + | chr8_1:78341915-78341934 | Msa1216580:exon | 35.0% |
| ACACTAGATTGAGGGTTAAA+AGG | - | chr8_1:78341972-78341991 | None:intergenic | 35.0% | |
| CAATGAATCATGGCATTCAA+AGG | + | chr8_1:78342025-78342044 | Msa1216580:CDS | 35.0% | |
| CATCAATTTATTGAGCCACT+TGG | + | chr8_1:78342160-78342179 | Msa1216580:intron | 35.0% | |
| TATATTGGGAATATGTGAGC+TGG | - | chr8_1:78342433-78342452 | None:intergenic | 35.0% | |
| ATGGCTGCAGCATTTAAATT+AGG | - | chr8_1:78342571-78342590 | None:intergenic | 35.0% | |
| TGAAACTATACTCTTCTCTG+TGG | - | chr8_1:78343140-78343159 | Msa1216590:intron | 35.0% | |
| GTATAGTTTCAACCTTCAGT+TGG | + | chr8_1:78343149-78343168 | Msa1216580:exon | 35.0% | |
| GGATCAAAATCAGTAGCCTT+AGG | + | chr8_1:78341946-78341965 | Msa1216580:CDS | 40.0% | |
| ATTGAGGGTTAAAAGGCCTA+AGG | - | chr8_1:78341965-78341984 | None:intergenic | 40.0% | |
| ATCATGGCATTCAAAGGTCT+AGG | + | chr8_1:78342031-78342050 | Msa1216580:CDS | 40.0% | |
| TCATGGCATTCAAAGGTCTA+GGG | + | chr8_1:78342032-78342051 | Msa1216580:CDS | 40.0% | |
| TTAGTCACGAACGTTCTATG+TGG | - | chr8_1:78342211-78342230 | None:intergenic | 40.0% | |
| !! | ACTCTAATTGCTGGTGTTGT+GGG | + | chr8_1:78342496-78342515 | Msa1216580:CDS | 40.0% |
| GGTTTCACTACATCAGTAAC+TGG | + | chr8_1:78342517-78342536 | Msa1216580:CDS | 40.0% | |
| CATGTCTTCACTGACAACAT+GGG | + | chr8_1:78342588-78342607 | Msa1216580:CDS | 40.0% | |
| GGATCAAAATCAGTAGCCTT+AGG | + | chr8_1:78341946-78341965 | Msa1216580:CDS | 40.0% | |
| ATTGAGGGTTAAAAGGCCTA+AGG | - | chr8_1:78341965-78341984 | None:intergenic | 40.0% | |
| ATCATGGCATTCAAAGGTCT+AGG | + | chr8_1:78342031-78342050 | Msa1216580:CDS | 40.0% | |
| TCATGGCATTCAAAGGTCTA+GGG | + | chr8_1:78342032-78342051 | Msa1216580:CDS | 40.0% | |
| TTAGTCACGAACGTTCTATG+TGG | - | chr8_1:78342211-78342230 | None:intergenic | 40.0% | |
| !! | ACTCTAATTGCTGGTGTTGT+GGG | + | chr8_1:78342496-78342515 | Msa1216580:CDS | 40.0% |
| GGTTTCACTACATCAGTAAC+TGG | + | chr8_1:78342517-78342536 | Msa1216580:CDS | 40.0% | |
| CATGTCTTCACTGACAACAT+GGG | + | chr8_1:78342588-78342607 | Msa1216580:CDS | 40.0% | |
| ! | TGTTGTTTGAGGATGGCTTC+CGG | + | chr8_1:78341922-78341941 | Msa1216580:exon | 45.0% |
| !!! | GGCTACTGATTTTGATCCTC+CGG | - | chr8_1:78341944-78341963 | None:intergenic | 45.0% |
| GCTTCATGGGCAATGAATCA+TGG | + | chr8_1:78342015-78342034 | Msa1216580:CDS | 45.0% | |
| ATTCAAAGGTCTAGGGAAGC+AGG | + | chr8_1:78342039-78342058 | Msa1216580:CDS | 45.0% | |
| TCACGACATATGACACCAAG+TGG | - | chr8_1:78342178-78342197 | None:intergenic | 45.0% | |
| CCAGTTGTCATGTTTCCCAT+TGG | - | chr8_1:78342460-78342479 | None:intergenic | 45.0% | |
| CCAATGGGAAACATGACAAC+TGG | + | chr8_1:78342457-78342476 | Msa1216580:CDS | 45.0% | |
| ! | CACTCTAATTGCTGGTGTTG+TGG | + | chr8_1:78342495-78342514 | Msa1216580:CDS | 45.0% |
| CCATGTTGTCAGTGAAGACA+TGG | - | chr8_1:78342590-78342609 | None:intergenic | 45.0% | |
| CCATGTCTTCACTGACAACA+TGG | + | chr8_1:78342587-78342606 | Msa1216580:CDS | 45.0% | |
| TTAGAATAAGGCTGACCCCA+TGG | - | chr8_1:78342629-78342648 | None:intergenic | 45.0% | |
| GCATGCAAAGAGATTGAACG+TGG | + | chr8_1:78342766-78342785 | Msa1216580:CDS | 45.0% | |
| GCAAAGAGATTGAACGTGGT+TGG | + | chr8_1:78342770-78342789 | Msa1216580:CDS | 45.0% | |
| ! | TGGTTGGACTGATTCAAACC+TGG | + | chr8_1:78342786-78342805 | Msa1216580:CDS | 45.0% |
| CGTGCATAACAGTTGTGTTG+CGG | - | chr8_1:78343087-78343106 | Msa1216590:intron | 45.0% | |
| TGCACGACTGTTATCCATGT+TGG | + | chr8_1:78343101-78343120 | Msa1216580:CDS | 45.0% | |
| GCACGACTGTTATCCATGTT+GGG | + | chr8_1:78343102-78343121 | Msa1216580:CDS | 45.0% | |
| CACGACTGTTATCCATGTTG+GGG | + | chr8_1:78343103-78343122 | Msa1216580:CDS | 45.0% | |
| ATGAAAGTGGCTCCAACTGA+AGG | - | chr8_1:78343164-78343183 | Msa1216590:intron | 45.0% | |
| ! | TGTTGTTTGAGGATGGCTTC+CGG | + | chr8_1:78341922-78341941 | Msa1216580:exon | 45.0% |
| !!! | GGCTACTGATTTTGATCCTC+CGG | - | chr8_1:78341944-78341963 | None:intergenic | 45.0% |
| GCTTCATGGGCAATGAATCA+TGG | + | chr8_1:78342015-78342034 | Msa1216580:CDS | 45.0% | |
| ATTCAAAGGTCTAGGGAAGC+AGG | + | chr8_1:78342039-78342058 | Msa1216580:CDS | 45.0% | |
| TCACGACATATGACACCAAG+TGG | - | chr8_1:78342178-78342197 | None:intergenic | 45.0% | |
| CCAGTTGTCATGTTTCCCAT+TGG | - | chr8_1:78342460-78342479 | None:intergenic | 45.0% | |
| CCAATGGGAAACATGACAAC+TGG | + | chr8_1:78342457-78342476 | Msa1216580:CDS | 45.0% | |
| ! | CACTCTAATTGCTGGTGTTG+TGG | + | chr8_1:78342495-78342514 | Msa1216580:CDS | 45.0% |
| CCATGTTGTCAGTGAAGACA+TGG | - | chr8_1:78342590-78342609 | None:intergenic | 45.0% | |
| CCATGTCTTCACTGACAACA+TGG | + | chr8_1:78342587-78342606 | Msa1216580:CDS | 45.0% | |
| TTAGAATAAGGCTGACCCCA+TGG | - | chr8_1:78342629-78342648 | None:intergenic | 45.0% | |
| GCATGCAAAGAGATTGAACG+TGG | + | chr8_1:78342766-78342785 | Msa1216580:CDS | 45.0% | |
| GCAAAGAGATTGAACGTGGT+TGG | + | chr8_1:78342770-78342789 | Msa1216580:CDS | 45.0% | |
| ! | TGGTTGGACTGATTCAAACC+TGG | + | chr8_1:78342786-78342805 | Msa1216580:CDS | 45.0% |
| CGTGCATAACAGTTGTGTTG+CGG | - | chr8_1:78343087-78343106 | Msa1216590:intron | 45.0% | |
| TGCACGACTGTTATCCATGT+TGG | + | chr8_1:78343101-78343120 | Msa1216580:CDS | 45.0% | |
| GCACGACTGTTATCCATGTT+GGG | + | chr8_1:78343102-78343121 | Msa1216580:CDS | 45.0% | |
| CACGACTGTTATCCATGTTG+GGG | + | chr8_1:78343103-78343122 | Msa1216580:CDS | 45.0% | |
| ATGAAAGTGGCTCCAACTGA+AGG | - | chr8_1:78343164-78343183 | Msa1216590:intron | 45.0% | |
| TGGGAATATGTGAGCTGGAG+TGG | - | chr8_1:78342428-78342447 | None:intergenic | 50.0% | |
| GCACTCACTCTGTTAGCCAT+GGG | + | chr8_1:78342610-78342629 | Msa1216580:CDS | 50.0% | |
| CACTCACTCTGTTAGCCATG+GGG | + | chr8_1:78342611-78342630 | Msa1216580:CDS | 50.0% | |
| ! | TGATTGTTTCAAGGGTGCGC+TGG | - | chr8_1:78343052-78343071 | Msa1216590:intron | 50.0% |
| !! | GAACTTCTGAAGCCCCAACA+TGG | - | chr8_1:78343118-78343137 | Msa1216590:intron | 50.0% |
| TGGGAATATGTGAGCTGGAG+TGG | - | chr8_1:78342428-78342447 | None:intergenic | 50.0% | |
| GCACTCACTCTGTTAGCCAT+GGG | + | chr8_1:78342610-78342629 | Msa1216580:CDS | 50.0% | |
| CACTCACTCTGTTAGCCATG+GGG | + | chr8_1:78342611-78342630 | Msa1216580:CDS | 50.0% | |
| ! | TGATTGTTTCAAGGGTGCGC+TGG | - | chr8_1:78343052-78343071 | Msa1216590:intron | 50.0% |
| !! | GAACTTCTGAAGCCCCAACA+TGG | - | chr8_1:78343118-78343137 | Msa1216590:intron | 50.0% |
| TGTTTGAGGATGGCTTCCGG+AGG | + | chr8_1:78341925-78341944 | Msa1216580:exon | 55.0% | |
| GGCACTCACTCTGTTAGCCA+TGG | + | chr8_1:78342609-78342628 | Msa1216580:CDS | 55.0% | |
| TGTTTGAGGATGGCTTCCGG+AGG | + | chr8_1:78341925-78341944 | Msa1216580:exon | 55.0% | |
| GGCACTCACTCTGTTAGCCA+TGG | + | chr8_1:78342609-78342628 | Msa1216580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 78341880 | 78343414 | 78341880 | ID=Msa1216580;Name=Msa1216580 |
| chr8_1 | mRNA | 78341880 | 78343414 | 78341880 | ID=Msa1216580-mRNA-1;Parent=Msa1216580;Name=Msa1216580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=54|1|1|1|1|1|4|260|164 |
| chr8_1 | exon | 78341880 | 78342060 | 78341880 | ID=Msa1216580-mRNA-1:exon:27107;Parent=Msa1216580-mRNA-1 |
| chr8_1 | exon | 78342413 | 78342632 | 78342413 | ID=Msa1216580-mRNA-1:exon:27108;Parent=Msa1216580-mRNA-1 |
| chr8_1 | exon | 78342762 | 78342807 | 78342762 | ID=Msa1216580-mRNA-1:exon:27109;Parent=Msa1216580-mRNA-1 |
| chr8_1 | exon | 78343053 | 78343414 | 78343053 | ID=Msa1216580-mRNA-1:exon:27110;Parent=Msa1216580-mRNA-1 |
| chr8_1 | five_prime_UTR | 78341880 | 78341933 | 78341880 | ID=Msa1216580-mRNA-1:five_prime_utr;Parent=Msa1216580-mRNA-1 |
| chr8_1 | CDS | 78341934 | 78342060 | 78341934 | ID=Msa1216580-mRNA-1:cds;Parent=Msa1216580-mRNA-1 |
| chr8_1 | CDS | 78342413 | 78342632 | 78342413 | ID=Msa1216580-mRNA-1:cds;Parent=Msa1216580-mRNA-1 |
| chr8_1 | CDS | 78342762 | 78342807 | 78342762 | ID=Msa1216580-mRNA-1:cds;Parent=Msa1216580-mRNA-1 |
| chr8_1 | CDS | 78343053 | 78343154 | 78343053 | ID=Msa1216580-mRNA-1:cds;Parent=Msa1216580-mRNA-1 |
| chr8_1 | three_prime_UTR | 78343155 | 78343414 | 78343155 | ID=Msa1216580-mRNA-1:three_prime_utr;Parent=Msa1216580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
