Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0064120 | sp|Q9SS87|SEOB_ARATH | 27.716 | 718 | 444 | 23 | 27 | 683 | 34 | 737 | 5.72e-66 | 234 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0064120 | E2FKJ2 | 97.575 | 701 | 17 | 0 | 1 | 701 | 1 | 701 | 0.0 | 1432 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003740 | Msa0064120 | 0.810230 | 1.278002e-50 | -8.615850e-47 |
Msa0009780 | Msa0064120 | 0.879179 | 1.539176e-69 | -8.615850e-47 |
Msa0015150 | Msa0064120 | 0.974253 | 7.848389e-138 | -8.615850e-47 |
Msa0017750 | Msa0064120 | 0.840259 | 9.682150e-58 | -8.615850e-47 |
Msa0025160 | Msa0064120 | 0.805382 | 1.371502e-49 | -8.615850e-47 |
Msa0029960 | Msa0064120 | 0.899250 | 2.386770e-77 | -8.615850e-47 |
Msa0029970 | Msa0064120 | 0.895795 | 6.825522e-76 | -8.615850e-47 |
Msa0029990 | Msa0064120 | 0.882543 | 9.536418e-71 | -8.615850e-47 |
Msa0043290 | Msa0064120 | 0.813158 | 2.949278e-51 | -8.615850e-47 |
Msa0050660 | Msa0064120 | 0.802986 | 4.323917e-49 | -8.615850e-47 |
Msa0050700 | Msa0064120 | 0.803738 | 3.020536e-49 | -8.615850e-47 |
Msa0053000 | Msa0064120 | 0.830460 | 2.900332e-55 | -8.615850e-47 |
Msa0061350 | Msa0064120 | 0.848032 | 7.933845e-60 | -8.615850e-47 |
Msa0064120 | Msa0071840 | 0.885062 | 1.123482e-71 | -8.615850e-47 |
Msa0064120 | Msa0071850 | 0.919789 | 2.899792e-87 | -8.615850e-47 |
Msa0064120 | Msa0071860 | 0.900684 | 5.728193e-78 | -8.615850e-47 |
Msa0064120 | Msa0072520 | 0.814260 | 1.686936e-51 | -8.615850e-47 |
Msa0064120 | Msa0098050 | 0.843149 | 1.673177e-58 | -8.615850e-47 |
Msa0064120 | Msa0104570 | 0.828833 | 7.214852e-55 | -8.615850e-47 |
Msa0064120 | Msa0108880 | 0.925275 | 2.288757e-90 | -8.615850e-47 |
Msa0064120 | Msa0125200 | 0.889510 | 2.271616e-73 | -8.615850e-47 |
Msa0064120 | Msa0125210 | 0.875820 | 2.279555e-68 | -8.615850e-47 |
Msa0064120 | Msa0125220 | 0.821809 | 3.313968e-53 | -8.615850e-47 |
Msa0064120 | Msa0137210 | 0.817259 | 3.617370e-52 | -8.615850e-47 |
Msa0064120 | Msa0155180 | 0.960378 | 1.725830e-118 | -8.615850e-47 |
Msa0064120 | Msa0156050 | 0.804706 | 1.899160e-49 | -8.615850e-47 |
Msa0064120 | Msa0159590 | 0.804539 | 2.058076e-49 | -8.615850e-47 |
Msa0064120 | Msa0161930 | 0.844692 | 6.457818e-59 | -8.615850e-47 |
Msa0064120 | Msa0182400 | 0.828560 | 8.399026e-55 | -8.615850e-47 |
Msa0064120 | Msa0193850 | 0.810158 | 1.324622e-50 | -8.615850e-47 |
Msa0064120 | Msa0205570 | 0.804067 | 2.581239e-49 | -8.615850e-47 |
Msa0064120 | Msa0205670 | 0.800562 | 1.359915e-48 | -8.615850e-47 |
Msa0064120 | Msa0230800 | 0.805000 | 1.649101e-49 | -8.615850e-47 |
Msa0064120 | Msa0230870 | 0.837201 | 5.978527e-57 | -8.615850e-47 |
Msa0064120 | Msa0235710 | 0.808118 | 3.624295e-50 | -8.615850e-47 |
Msa0064120 | Msa0268100 | 0.808353 | 3.228424e-50 | -8.615850e-47 |
Msa0064120 | Msa0342840 | 0.801490 | 8.783894e-49 | -8.615850e-47 |
Msa0064120 | Msa0359010 | 0.837923 | 3.903570e-57 | -8.615850e-47 |
Msa0064120 | Msa0382530 | 0.885368 | 8.640101e-72 | -8.615850e-47 |
Msa0064120 | Msa0405680 | 0.806736 | 7.115271e-50 | -8.615850e-47 |
Msa0064120 | Msa0415610 | 0.805754 | 1.145603e-49 | -8.615850e-47 |
Msa0064120 | Msa0418970 | 0.871266 | 7.792715e-67 | -8.615850e-47 |
Msa0064120 | Msa0424490 | 0.817234 | 3.664966e-52 | -8.615850e-47 |
Msa0064120 | Msa0432320 | 0.881197 | 2.931250e-70 | -8.615850e-47 |
Msa0064120 | Msa0433760 | 0.813230 | 2.843722e-51 | -8.615850e-47 |
Msa0064120 | Msa0451170 | 0.839266 | 1.755638e-57 | -8.615850e-47 |
Msa0064120 | Msa0460550 | 0.905181 | 5.627033e-80 | -8.615850e-47 |
Msa0064120 | Msa0460630 | 0.840642 | 7.688151e-58 | -8.615850e-47 |
Msa0064120 | Msa0466520 | 0.800590 | 1.342017e-48 | -8.615850e-47 |
Msa0064120 | Msa0471460 | 0.841106 | 5.808474e-58 | -8.615850e-47 |
Msa0064120 | Msa0471540 | 0.819736 | 9.930172e-53 | -8.615850e-47 |
Msa0064120 | Msa0477630 | 0.811526 | 6.698061e-51 | -8.615850e-47 |
Msa0064120 | Msa0482080 | 0.824243 | 8.969119e-54 | -8.615850e-47 |
Msa0064120 | Msa0498610 | 0.840272 | 9.610549e-58 | -8.615850e-47 |
Msa0064120 | Msa0521680 | 0.809719 | 1.646650e-50 | -8.615850e-47 |
Msa0064120 | Msa0525210 | 0.888553 | 5.330780e-73 | -8.615850e-47 |
Msa0064120 | Msa0526010 | 0.867697 | 1.130249e-65 | -8.615850e-47 |
Msa0064120 | Msa0528570 | 0.812838 | 3.465599e-51 | -8.615850e-47 |
Msa0064120 | Msa0541740 | 0.801818 | 7.523519e-49 | -8.615850e-47 |
Msa0064120 | Msa0562560 | 0.807952 | 3.930693e-50 | -8.615850e-47 |
Msa0064120 | Msa0562620 | 0.823200 | 1.573938e-53 | -8.615850e-47 |
Msa0064120 | Msa0579780 | 0.858834 | 6.276624e-63 | -8.615850e-47 |
Msa0064120 | Msa0587300 | 0.816472 | 5.434250e-52 | -8.615850e-47 |
Msa0064120 | Msa0588920 | 0.812634 | 3.841198e-51 | -8.615850e-47 |
Msa0064120 | Msa0603120 | 0.803632 | 3.178315e-49 | -8.615850e-47 |
Msa0064120 | Msa0609300 | 0.868462 | 6.413230e-66 | -8.615850e-47 |
Msa0064120 | Msa0616210 | 0.812581 | 3.945610e-51 | -8.615850e-47 |
Msa0064120 | Msa0621710 | 0.800342 | 1.507311e-48 | -8.615850e-47 |
Msa0064120 | Msa0622110 | 0.866649 | 2.443402e-65 | -8.615850e-47 |
Msa0064120 | Msa0649840 | 0.874573 | 6.076888e-68 | -8.615850e-47 |
Msa0064120 | Msa0657210 | 0.811977 | 5.344897e-51 | -8.615850e-47 |
Msa0064120 | Msa0691910 | 0.862301 | 5.584154e-64 | -8.615850e-47 |
Msa0064120 | Msa0695560 | 0.822462 | 2.338973e-53 | -8.615850e-47 |
Msa0064120 | Msa0699540 | 0.814031 | 1.894550e-51 | -8.615850e-47 |
Msa0064120 | Msa0699840 | 0.806662 | 7.375808e-50 | -8.615850e-47 |
Msa0064120 | Msa0701250 | 0.802164 | 6.388592e-49 | -8.615850e-47 |
Msa0064120 | Msa0701720 | 0.814564 | 1.445004e-51 | -8.615850e-47 |
Msa0064120 | Msa0703770 | 0.805257 | 1.456758e-49 | -8.615850e-47 |
Msa0064120 | Msa0736440 | 0.817015 | 4.105267e-52 | -8.615850e-47 |
Msa0064120 | Msa0738700 | 0.843758 | 1.150562e-58 | -8.615850e-47 |
Msa0064120 | Msa0740090 | 0.890272 | 1.144260e-73 | -8.615850e-47 |
Msa0064120 | Msa0780910 | 0.801649 | 8.150405e-49 | -8.615850e-47 |
Msa0064120 | Msa0782750 | 0.876081 | 1.853753e-68 | -8.615850e-47 |
Msa0064120 | Msa0800200 | 0.805887 | 1.074547e-49 | -8.615850e-47 |
Msa0064120 | Msa0820380 | 0.886409 | 3.506787e-72 | -8.615850e-47 |
Msa0064120 | Msa0849650 | 0.828871 | 7.066465e-55 | -8.615850e-47 |
Msa0064120 | Msa0859290 | 0.823949 | 1.051389e-53 | -8.615850e-47 |
Msa0064120 | Msa0860790 | 0.804446 | 2.152178e-49 | -8.615850e-47 |
Msa0064120 | Msa0931590 | 0.812428 | 4.261491e-51 | -8.615850e-47 |
Msa0064120 | Msa1014320 | 0.903320 | 3.920232e-79 | -8.615850e-47 |
Msa0064120 | Msa1021780 | 0.851479 | 8.639176e-61 | -8.615850e-47 |
Msa0064120 | Msa1039680 | 0.821829 | 3.278734e-53 | -8.615850e-47 |
Msa0064120 | Msa1042160 | 0.807975 | 3.887791e-50 | -8.615850e-47 |
Msa0064120 | Msa1042190 | 0.810230 | 1.278283e-50 | -8.615850e-47 |
Msa0064120 | Msa1055310 | 0.903317 | 3.930744e-79 | -8.615850e-47 |
Msa0064120 | Msa1078820 | 0.801531 | 8.618399e-49 | -8.615850e-47 |
Msa0064120 | Msa1078880 | 0.813173 | 2.926758e-51 | -8.615850e-47 |
Msa0064120 | Msa1105720 | 0.803955 | 2.722797e-49 | -8.615850e-47 |
Msa0064120 | Msa1123970 | 0.800621 | 1.322338e-48 | -8.615850e-47 |
Msa0064120 | Msa1167470 | 0.810329 | 1.216624e-50 | -8.615850e-47 |
Msa0064120 | Msa1169190 | 0.812328 | 4.481735e-51 | -8.615850e-47 |
Msa0064120 | Msa1187760 | 0.834565 | 2.784763e-56 | -8.615850e-47 |
Msa0064120 | Msa1188170 | 0.846348 | 2.298154e-59 | -8.615850e-47 |
Msa0064120 | Msa1209320 | 0.837654 | 4.575957e-57 | -8.615850e-47 |
Msa0064120 | Msa1209720 | 0.831154 | 1.960573e-55 | -8.615850e-47 |
Msa0064120 | Msa1211640 | 0.810375 | 1.189381e-50 | -8.615850e-47 |
Msa0064120 | Msa1211910 | 0.809995 | 1.435973e-50 | -8.615850e-47 |
Msa0064120 | Msa1216580 | 0.802151 | 6.428240e-49 | -8.615850e-47 |
Msa0064120 | Msa1219820 | 0.803479 | 3.418862e-49 | -8.615850e-47 |
Msa0064120 | Msa1241970 | 0.802332 | 5.899777e-49 | -8.615850e-47 |
Msa0064120 | Msa1257340 | 0.827193 | 1.790868e-54 | -8.615850e-47 |
Msa0064120 | Msa1262860 | 0.825370 | 4.865601e-54 | -8.615850e-47 |
Msa0064120 | Msa1263780 | 0.812497 | 4.116238e-51 | -8.615850e-47 |
Msa0064120 | Msa1267050 | 0.827896 | 1.214183e-54 | -8.615850e-47 |
Msa0064120 | Msa1267180 | 0.827695 | 1.357544e-54 | -8.615850e-47 |
Msa0064120 | Msa1267930 | 0.802291 | 6.014400e-49 | -8.615850e-47 |
Msa0064120 | Msa1290380 | 0.818914 | 1.528409e-52 | -8.615850e-47 |
Msa0064120 | Msa1290440 | 0.813913 | 2.011618e-51 | -8.615850e-47 |
Msa0064120 | Msa1298650 | 0.815557 | 8.698037e-52 | -8.615850e-47 |
Msa0064120 | Msa1304950 | 0.862713 | 4.170516e-64 | -8.615850e-47 |
Msa0064120 | Msa1356220 | 0.822567 | 2.211006e-53 | -8.615850e-47 |
Msa0064120 | Msa1356350 | 0.825622 | 4.238735e-54 | -8.615850e-47 |
Msa0064120 | Msa1360930 | 0.818752 | 1.663686e-52 | -8.615850e-47 |
Msa0064120 | Msa1367840 | 0.836107 | 1.135540e-56 | -8.615850e-47 |
Msa0064120 | Msa1369010 | 0.810414 | 1.166637e-50 | -8.615850e-47 |
Msa0064120 | Msa1380120 | 0.805602 | 1.233320e-49 | -8.615850e-47 |
Msa0064120 | Msa1381030 | 0.802591 | 5.217280e-49 | -8.615850e-47 |
Msa0064120 | Msa1381470 | 0.810743 | 9.902661e-51 | -8.615850e-47 |
Msa0064120 | Msa1382580 | 0.814106 | 1.823950e-51 | -8.615850e-47 |
Msa0064120 | Msa1400010 | 0.800113 | 1.678622e-48 | -8.615850e-47 |
Msa0064120 | Msa1401520 | 0.813735 | 2.202324e-51 | -8.615850e-47 |
Msa0064120 | Msa1404480 | 0.825551 | 4.406599e-54 | -8.615850e-47 |
Msa0064120 | Msa1406720 | 0.804787 | 1.826968e-49 | -8.615850e-47 |
Msa0064120 | Msa1409410 | 0.810165 | 1.320064e-50 | -8.615850e-47 |
Msa0064120 | Msa1415540 | 0.818066 | 2.379289e-52 | -8.615850e-47 |
Msa0064120 | Msa1429860 | 0.892534 | 1.452657e-74 | -8.615850e-47 |
Msa0064120 | Msa1433790 | 0.814205 | 1.734785e-51 | -8.615850e-47 |
Msa0064120 | Msa1435630 | 0.886426 | 3.454722e-72 | -8.615850e-47 |
Msa0064120 | Msa1440430 | 0.800987 | 1.113525e-48 | -8.615850e-47 |
Msa0064120 | Msa1457840 | 0.800457 | 1.428740e-48 | -8.615850e-47 |
Msa0064120 | Msa1462560 | 0.811820 | 5.783180e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0064120 | MtrunA17_Chr1g0165791 | 97.575 | 701 | 17 | 0 | 1 | 701 | 1 | 701 | 0.0 | 1432 |
Msa0064120 | MtrunA17_Chr1g0187001 | 46.852 | 683 | 310 | 15 | 16 | 687 | 2 | 642 | 0.0 | 586 |
Msa0064120 | MtrunA17_Chr1g0186981 | 42.544 | 684 | 356 | 9 | 2 | 677 | 8 | 662 | 0.0 | 548 |
Msa0064120 | MtrunA17_Chr1g0186991 | 42.522 | 682 | 357 | 13 | 5 | 677 | 11 | 666 | 1.17e-171 | 507 |
Msa0064120 | MtrunA17_Chr1g0186841 | 37.668 | 669 | 392 | 11 | 24 | 685 | 20 | 670 | 3.18e-150 | 452 |
Msa0064120 | MtrunA17_Chr1g0186851 | 36.132 | 667 | 402 | 10 | 25 | 685 | 20 | 668 | 2.42e-149 | 449 |
Msa0064120 | MtrunA17_Chr1g0187041 | 35.693 | 664 | 397 | 11 | 24 | 677 | 19 | 662 | 3.74e-142 | 431 |
Msa0064120 | MtrunA17_Chr1g0186861 | 35.045 | 662 | 404 | 11 | 25 | 678 | 20 | 663 | 1.68e-139 | 424 |
Msa0064120 | MtrunA17_Chr1g0186911 | 35.060 | 579 | 352 | 10 | 106 | 678 | 1 | 561 | 1.63e-119 | 369 |
Msa0064120 | MtrunA17_Chr7g0226571 | 30.186 | 699 | 423 | 23 | 30 | 677 | 26 | 710 | 5.26e-87 | 288 |
Msa0064120 | MtrunA17_Chr8g0381301 | 29.037 | 706 | 421 | 25 | 30 | 677 | 20 | 703 | 1.54e-75 | 257 |
Msa0064120 | MtrunA17_Chr3g0116601 | 28.177 | 724 | 449 | 23 | 3 | 676 | 2 | 704 | 1.07e-71 | 246 |
Msa0064120 | MtrunA17_Chr8g0364451 | 47.126 | 87 | 40 | 3 | 106 | 190 | 48 | 130 | 7.31e-14 | 70.1 |
Msa0064120 | MtrunA17_Chr1g0186901 | 34.653 | 101 | 61 | 2 | 25 | 123 | 20 | 117 | 1.93e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0064120 | AT3G01680.1 | 27.716 | 718 | 444 | 23 | 27 | 683 | 34 | 737 | 5.82e-67 | 234 |
Msa0064120 | AT3G01670.1 | 25.369 | 745 | 452 | 26 | 4 | 676 | 108 | 820 | 5.68e-50 | 187 |
Msa0064120 | AT3G01670.2 | 25.202 | 742 | 457 | 24 | 4 | 676 | 132 | 844 | 1.42e-49 | 187 |
Msa0064120 | AT1G67790.1 | 24.319 | 514 | 345 | 15 | 28 | 517 | 9 | 502 | 6.35e-28 | 120 |
Find 152 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAATCGTTCCTCGTTTC+TGG | 0.066845 | 1_2:+25085989 | Msa0064120:CDS |
GTGTTTGTTTGGTTGGTTTC+TGG | 0.101255 | 1_2:+25086481 | Msa0064120:three_prime_UTR |
CTCAAAAGTGGAACTGGTTT+TGG | 0.139446 | 1_2:+25085649 | Msa0064120:CDS |
TTCCATTGTAAGCAAATTAA+AGG | 0.155216 | 1_2:+25084512 | Msa0064120:CDS |
CATTAGAATATGGAAATTTC+TGG | 0.161510 | 1_2:+25083928 | Msa0064120:CDS |
GCAAAGTCATGTGTCCATTT+TGG | 0.177728 | 1_2:-25085880 | None:intergenic |
CATGTGTTGGTATTCATTTC+AGG | 0.222644 | 1_2:+25085252 | Msa0064120:CDS |
GAGAGATATAATAACTTTCT+TGG | 0.228493 | 1_2:+25082879 | Msa0064120:five_prime_UTR |
AGATTCCTGTTGCTGTTTAT+TGG | 0.243721 | 1_2:+25084168 | Msa0064120:CDS |
AAATCATATGCATTGCATTA+TGG | 0.255922 | 1_2:-25085572 | None:intergenic |
CAGAAATATGCTTCAGTTTA+CGG | 0.256894 | 1_2:-25083289 | None:intergenic |
TCTATCCCTTGGCTGGAATA+AGG | 0.257305 | 1_2:+25085475 | Msa0064120:CDS |
GAAGACAGACTTCCCTTATC+TGG | 0.274120 | 1_2:+25083251 | Msa0064120:CDS |
GTGAATGTGAATCAGATTAA+AGG | 0.277979 | 1_2:+25085823 | Msa0064120:intron |
AAAGTTATTATATCTCTCTT+TGG | 0.281682 | 1_2:-25082874 | None:intergenic |
AGTCTTCCACAATGAAATTC+AGG | 0.283440 | 1_2:+25084810 | Msa0064120:CDS |
GATTCCTGTTGCTGTTTATT+GGG | 0.286090 | 1_2:+25084169 | Msa0064120:CDS |
ATCTCTCTTTGGAGCTACTA+TGG | 0.297473 | 1_2:-25082863 | None:intergenic |
GGAATTATTTGTTGAATGTT+TGG | 0.319841 | 1_2:+25086502 | Msa0064120:three_prime_UTR |
ACGGAGGAACAGACCCAAAA+TGG | 0.326130 | 1_2:+25085866 | Msa0064120:CDS |
GCCTTCTGTGTGCCCTTGAA+TGG | 0.330642 | 1_2:+25086606 | Msa0064120:three_prime_UTR |
TGGATAAACCTTCTTCATTT+CGG | 0.333794 | 1_2:-25085673 | None:intergenic |
TTTGAATCAGGACAGTAAAT+AGG | 0.340556 | 1_2:-25086333 | None:intergenic |
CAGGTGAGCTAGAAGATTAC+TGG | 0.342565 | 1_2:+25084731 | Msa0064120:intron |
GTTCTTCCACAGTTTGAATC+AGG | 0.348453 | 1_2:-25086345 | None:intergenic |
AGGTTAGCATCGAAGTGTTT+AGG | 0.358989 | 1_2:+25085223 | Msa0064120:intron |
TTATCATCACTCCATGCTAA+TGG | 0.362851 | 1_2:-25082983 | None:intergenic |
TGAATGTGAATCAGATTAAA+GGG | 0.366060 | 1_2:+25085824 | Msa0064120:intron |
CAAATTCAGCTTTGTGAAGT+AGG | 0.370216 | 1_2:-25085410 | None:intergenic |
GAAGAACCAAGAGAACTAAA+AGG | 0.372963 | 1_2:+25085333 | Msa0064120:CDS |
TTTCATTTGTTTGTTTATGT+TGG | 0.375418 | 1_2:+25086561 | Msa0064120:three_prime_UTR |
TTGGAAAAGCTTTCAACAAA+AGG | 0.378856 | 1_2:+25084101 | Msa0064120:CDS |
TCTTGATGTGTTTGTTTGGT+TGG | 0.379201 | 1_2:+25086474 | Msa0064120:exon |
AAACCTCAACAATTTCTGTT+GGG | 0.390355 | 1_2:-25084777 | None:intergenic |
TATCATCACTCCATGCTAAT+GGG | 0.399622 | 1_2:-25082982 | None:intergenic |
AGGGTCCAATCATCCACAAT+TGG | 0.400463 | 1_2:-25085390 | None:intergenic |
CATTGCTGATTACAACAGTT+TGG | 0.400657 | 1_2:+25084040 | Msa0064120:CDS |
CGACCGAGCAGTTTCACATT+TGG | 0.403560 | 1_2:-25086138 | None:intergenic |
CTTACAAGGTCTTGGAGTCT+TGG | 0.407678 | 1_2:-25085693 | None:intergenic |
CACTTACTCAAAAGTGGAAC+TGG | 0.410991 | 1_2:+25085643 | Msa0064120:CDS |
TCATCATCTGTGGGACGAAA+AGG | 0.411574 | 1_2:-25085618 | None:intergenic |
TTCTTGTAGTCCAGCGTAGA+TGG | 0.412320 | 1_2:-25085313 | None:intergenic |
GACACATTCATCTTCATATA+CGG | 0.413666 | 1_2:+25085847 | Msa0064120:CDS |
AATTTGTACTTACAAGGTCT+TGG | 0.416127 | 1_2:-25085701 | None:intergenic |
CACCGGTGTGGACATGAGTT+AGG | 0.420531 | 1_2:-25083024 | None:intergenic |
ATCGTTCCTCGTTTCTGGAT+TGG | 0.420969 | 1_2:+25085994 | Msa0064120:CDS |
GGGTTCAGAACAGGTAGAAT+TGG | 0.427233 | 1_2:-25085531 | None:intergenic |
AAAACCTCAACAATTTCTGT+TGG | 0.427718 | 1_2:-25084778 | None:intergenic |
AAGGTCTTGATGTGTTTGTT+TGG | 0.438101 | 1_2:+25086470 | Msa0064120:exon |
CACCACTTGGTGTTTGAACT+AGG | 0.444045 | 1_2:-25083953 | None:intergenic |
ATAGCCCAATAAACAGCAAC+AGG | 0.445960 | 1_2:-25084173 | None:intergenic |
CCTTCTGTGTGCCCTTGAAT+GGG | 0.448661 | 1_2:+25086607 | Msa0064120:three_prime_UTR |
GGATCCCAATTGTGGATGAT+TGG | 0.449147 | 1_2:+25085385 | Msa0064120:CDS |
GAGTACTTCTATCCCTTGGC+TGG | 0.451475 | 1_2:+25085468 | Msa0064120:CDS |
TGCATATTAGCACAAGCAAC+AGG | 0.456296 | 1_2:-25086279 | None:intergenic |
TAGATGATGAGCACACTTCC+TGG | 0.460640 | 1_2:+25083810 | Msa0064120:intron |
GCCTAACATGTCGTCTTCAA+TGG | 0.463271 | 1_2:+25082901 | Msa0064120:exon |
AAGATTACTGGAGACGTAAG+AGG | 0.465559 | 1_2:+25084743 | Msa0064120:CDS |
CGCTGATAGTGTTGCATCCA+AGG | 0.468545 | 1_2:+25083111 | Msa0064120:CDS |
TATTTAAAACAACCCATTCA+AGG | 0.472814 | 1_2:-25086619 | None:intergenic |
AGCCTTTAATTTGCTTACAA+TGG | 0.473426 | 1_2:-25084514 | None:intergenic |
CTACCTAGAGGGTTCAGAAC+AGG | 0.476347 | 1_2:-25085540 | None:intergenic |
CTGTCTTCTACAAGACCTAC+AGG | 0.477249 | 1_2:-25083236 | None:intergenic |
AAATTCAGCTTTGTGAAGTA+GGG | 0.482259 | 1_2:-25085409 | None:intergenic |
AGGAGGCTCATAACCAGATA+AGG | 0.484803 | 1_2:-25083264 | None:intergenic |
TGATGGCTTGAACAGACAAA+TGG | 0.485289 | 1_2:+25084846 | Msa0064120:CDS |
CAAACAAGACCAGCCAGGTT+GGG | 0.490006 | 1_2:+25086098 | Msa0064120:CDS |
ATGAGTCACTTACTCAAAAG+TGG | 0.491847 | 1_2:+25085637 | Msa0064120:CDS |
TCTCGTCTCTTATGCTGTCT+AGG | 0.493672 | 1_2:-25085275 | None:intergenic |
AAGAAGATTTCAAGATCTTG+TGG | 0.495575 | 1_2:+25085364 | Msa0064120:CDS |
ATCAGCTGAAATCCCATACA+TGG | 0.498650 | 1_2:+25083871 | Msa0064120:CDS |
CATCATCTGTGGGACGAAAA+GGG | 0.499129 | 1_2:-25085617 | None:intergenic |
ACATTACTTGCAAGTGAAGC+TGG | 0.499453 | 1_2:-25082926 | None:intergenic |
TGGAAAAGCTTTCAACAAAA+GGG | 0.503349 | 1_2:+25084102 | Msa0064120:CDS |
ACAAGGAGCAGAAAGCATAT+AGG | 0.503383 | 1_2:+25084543 | Msa0064120:CDS |
GCCATTGAAGACGACATGTT+AGG | 0.506056 | 1_2:-25082902 | None:intergenic |
AATTAAAGGCTCATCTTACA+AGG | 0.509783 | 1_2:+25084526 | Msa0064120:CDS |
GGGTCCAATCATCCACAATT+GGG | 0.510095 | 1_2:-25085389 | None:intergenic |
AACCTCAACAATTTCTGTTG+GGG | 0.510402 | 1_2:-25084776 | None:intergenic |
ATTTAAAACAACCCATTCAA+GGG | 0.515381 | 1_2:-25086618 | None:intergenic |
GGAGGCTCATAACCAGATAA+GGG | 0.525657 | 1_2:-25083263 | None:intergenic |
ACACCAAGTGGTGACTCACT+TGG | 0.527054 | 1_2:+25083963 | Msa0064120:CDS |
GGTTGAGTACTTCTATCCCT+TGG | 0.529205 | 1_2:+25085464 | Msa0064120:CDS |
CTACCTGTTCTGAACCCTCT+AGG | 0.529548 | 1_2:+25085537 | Msa0064120:CDS |
ACTGAAGCATATTTCTGCCC+AGG | 0.531572 | 1_2:+25083295 | Msa0064120:CDS |
CTGAAATCCCATACATGGGA+TGG | 0.532648 | 1_2:+25083876 | Msa0064120:CDS |
ACAAAACCACCACTCTCAGC+AGG | 0.533265 | 1_2:-25086435 | None:intergenic |
TATCAACCTTATTCCAGCCA+AGG | 0.535936 | 1_2:-25085481 | None:intergenic |
TGCTTGTGCTAATATGCAGT+TGG | 0.535959 | 1_2:+25086284 | Msa0064120:CDS |
ATGTGAGCATGGTGCTCACC+AGG | 0.537625 | 1_2:-25083828 | None:intergenic |
GAGTTAGGTAAACGGTTTCG+AGG | 0.540103 | 1_2:-25083009 | None:intergenic |
TTCCACATCGTACCTTTCAC+CGG | 0.543184 | 1_2:-25083041 | None:intergenic |
TGGCAGACTGGGACTCCTGT+AGG | 0.544529 | 1_2:+25083221 | Msa0064120:intron |
TTCAAGCCATCAAAGACAAG+GGG | 0.551538 | 1_2:-25084835 | None:intergenic |
GTAATAGAGCATTTCCACTT+CGG | 0.551983 | 1_2:+25085955 | Msa0064120:CDS |
TTAGTAGAACCCAACCTGGC+TGG | 0.552075 | 1_2:-25086107 | None:intergenic |
TGCATAGCTTCAGACAAAGC+AGG | 0.554275 | 1_2:-25084143 | None:intergenic |
TGTCTCAAACAAGACCAGCC+AGG | 0.555894 | 1_2:+25086093 | Msa0064120:CDS |
GTGGACATGAGTTAGGTAAA+CGG | 0.556772 | 1_2:-25083017 | None:intergenic |
CTTCCAAGTGAGTCACCACT+TGG | 0.558326 | 1_2:-25083966 | None:intergenic |
TGTTGAGTGTATTACTGAGT+TGG | 0.559184 | 1_2:+25084082 | Msa0064120:CDS |
ATCAACCTTATTCCAGCCAA+GGG | 0.563390 | 1_2:-25085480 | None:intergenic |
AACACTATCAGCGACTGCAC+TGG | 0.566260 | 1_2:-25083101 | None:intergenic |
CTCATGTCCACACCGGTGAA+AGG | 0.569357 | 1_2:+25083029 | Msa0064120:CDS |
TAGCAATCGAGAAAATCAAA+AGG | 0.570446 | 1_2:+25085905 | Msa0064120:CDS |
TCAAACAAGACCAGCCAGGT+TGG | 0.571127 | 1_2:+25086097 | Msa0064120:CDS |
GTTAGCTACAAGTGTTGCCA+TGG | 0.571157 | 1_2:+25086384 | Msa0064120:CDS |
TGCTTCAGTTTACGGATAGG+AGG | 0.575601 | 1_2:-25083281 | None:intergenic |
GTTTAGGAGGAAGCATGTGT+TGG | 0.578541 | 1_2:+25085239 | Msa0064120:CDS |
ATATGCTTCAGTTTACGGAT+AGG | 0.583335 | 1_2:-25083284 | None:intergenic |
AACCCCAACAGAAATTGTTG+AGG | 0.583535 | 1_2:+25084774 | Msa0064120:CDS |
AAACTTCAAACCCATTAGCA+TGG | 0.583737 | 1_2:+25082972 | Msa0064120:CDS |
GCTCCTCCTGCTGAGAGTGG+TGG | 0.584351 | 1_2:+25086429 | Msa0064120:CDS |
AATGTGAAACTGCTCGGTCG+CGG | 0.586302 | 1_2:+25086141 | Msa0064120:CDS |
ATAGGATCAAGAATATCTGA+AGG | 0.587932 | 1_2:-25086315 | None:intergenic |
GATCTTGTGGATCCCAATTG+TGG | 0.592782 | 1_2:+25085377 | Msa0064120:CDS |
AGTAAGTGACTCATCATCTG+TGG | 0.597034 | 1_2:-25085628 | None:intergenic |
TACTGTCCTGATTCAAACTG+TGG | 0.599493 | 1_2:+25086339 | Msa0064120:CDS |
CTTCTTCAATCCATCTACGC+TGG | 0.599801 | 1_2:+25085303 | Msa0064120:CDS |
TTAGCATCGAAGTGTTTAGG+AGG | 0.599845 | 1_2:+25085226 | Msa0064120:CDS |
TTCAAACTGTGGAAGAACAA+TGG | 0.600916 | 1_2:+25086350 | Msa0064120:CDS |
GCTAGAAATGCCATGGTATG+TGG | 0.603153 | 1_2:+25085443 | Msa0064120:CDS |
GGACCAAATGTGAAACTGCT+CGG | 0.603872 | 1_2:+25086135 | Msa0064120:CDS |
GGTTCACAATCCTACCTAGA+GGG | 0.606256 | 1_2:-25085551 | None:intergenic |
CTGTTCTGAACCCTCTAGGT+AGG | 0.607740 | 1_2:+25085541 | Msa0064120:CDS |
CAAACTGTTGTAATCAGCAA+TGG | 0.608903 | 1_2:-25084039 | None:intergenic |
ACTTGAAGCTAGAAATGCCA+TGG | 0.609318 | 1_2:+25085436 | Msa0064120:CDS |
ACATTGTTGTCATGTGAGCA+TGG | 0.611775 | 1_2:-25083839 | None:intergenic |
GTGTCAGCTTATAGCCAACA+AGG | 0.616261 | 1_2:+25082947 | Msa0064120:CDS |
CCCATTCAAGGGCACACAGA+AGG | 0.618078 | 1_2:-25086607 | None:intergenic |
TGTTCAAGCCATCAAAGACA+AGG | 0.620643 | 1_2:-25084837 | None:intergenic |
TTGCTTAGTAGAACCCAACC+TGG | 0.620916 | 1_2:-25086111 | None:intergenic |
GAAGCTCCTCCTGCTGAGAG+TGG | 0.621719 | 1_2:+25086426 | Msa0064120:CDS |
AGATTACTGGAGACGTAAGA+GGG | 0.628070 | 1_2:+25084744 | Msa0064120:CDS |
TAGGATCAAGAATATCTGAA+GGG | 0.630323 | 1_2:-25086314 | None:intergenic |
CATCGTACCTTTCACCGGTG+TGG | 0.641644 | 1_2:-25083036 | None:intergenic |
GTTCAAGCCATCAAAGACAA+GGG | 0.644512 | 1_2:-25084836 | None:intergenic |
GTAAGTGACTCATCATCTGT+GGG | 0.646861 | 1_2:-25085627 | None:intergenic |
CGTTCTCGTGAGTATGACCA+TGG | 0.648414 | 1_2:-25086401 | None:intergenic |
GGTTGGGTTCTACTAAGCAA+AGG | 0.652919 | 1_2:+25086114 | Msa0064120:CDS |
AAGTACTCAACCACATACCA+TGG | 0.655414 | 1_2:-25085453 | None:intergenic |
CACCGGTGAAAGGTACGATG+TGG | 0.656165 | 1_2:+25083039 | Msa0064120:CDS |
CACCTAGTTCAAACACCAAG+TGG | 0.658165 | 1_2:+25083951 | Msa0064120:CDS |
TGGTTCACAATCCTACCTAG+AGG | 0.663403 | 1_2:-25085552 | None:intergenic |
AAACCACCACTCTCAGCAGG+AGG | 0.667205 | 1_2:-25086432 | None:intergenic |
GAATGTGAATCAGATTAAAG+GGG | 0.681348 | 1_2:+25085825 | Msa0064120:intron |
TACCTAACTCATGTCCACAC+CGG | 0.681654 | 1_2:+25083022 | Msa0064120:CDS |
TCAGCTGAAATCCCATACAT+GGG | 0.682027 | 1_2:+25083872 | Msa0064120:CDS |
ACATTCATCTTCATATACGG+AGG | 0.688432 | 1_2:+25085850 | Msa0064120:CDS |
TCAAATGTATGCAACTGCTG+TGG | 0.727594 | 1_2:+25086167 | Msa0064120:CDS |
TCTATGCCAATCCAGAAACG+AGG | 0.741708 | 1_2:-25086000 | None:intergenic |
TCAAGCCATCAAAGACAAGG+GGG | 0.746571 | 1_2:-25084834 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATTAATTCACAATTATATT+TGG | - | chr1_2:25083177-25083196 | None:intergenic | 15.0% |
!! | AAAATATTGTATCATTTGTT+TGG | + | chr1_2:25083201-25083220 | Msa0064120:intron | 15.0% |
!! | AATTGATATAAAAATTACCT+GGG | - | chr1_2:25083315-25083334 | None:intergenic | 15.0% |
!! | AAATTGATATAAAAATTACC+TGG | - | chr1_2:25083316-25083335 | None:intergenic | 15.0% |
!! | ATAAAATAAAATGTACATGT+TGG | - | chr1_2:25083427-25083446 | None:intergenic | 15.0% |
!! | TAAAAGGAACATATTATTAT+GGG | + | chr1_2:25083674-25083693 | Msa0064120:intron | 15.0% |
!!! | TACTTTAAAAGTATTTATTG+AGG | - | chr1_2:25084305-25084324 | None:intergenic | 15.0% |
!! | TATCATTAATAGTTATCATT+AGG | - | chr1_2:25084916-25084935 | None:intergenic | 15.0% |
!! | TATTTAGTGACAAAATATAT+TGG | - | chr1_2:25085076-25085095 | None:intergenic | 15.0% |
!!! | ATTATATCTATTTTTGCTAA+AGG | + | chr1_2:25085732-25085751 | Msa0064120:intron | 15.0% |
!!! | TTATATCTATTTTTGCTAAA+GGG | + | chr1_2:25085733-25085752 | Msa0064120:intron | 15.0% |
!! | AAAGTTATTATATCTCTCTT+TGG | - | chr1_2:25082877-25082896 | None:intergenic | 20.0% |
!! | TAAAATTCAGATCATTGTAT+AGG | + | chr1_2:25083354-25083373 | Msa0064120:intron | 20.0% |
!! | GCAAAAATGTATATGTATTT+AGG | - | chr1_2:25083514-25083533 | None:intergenic | 20.0% |
!! | TGCTTATATATTTATTCTAG+AGG | + | chr1_2:25083531-25083550 | Msa0064120:intron | 20.0% |
!! | CTAAAAGGAACATATTATTA+TGG | + | chr1_2:25083673-25083692 | Msa0064120:intron | 20.0% |
!!! | TCTTTATTTGCTTTTTTTAG+TGG | + | chr1_2:25084599-25084618 | Msa0064120:intron | 20.0% |
!!! | CTTTATTTGCTTTTTTTAGT+GGG | + | chr1_2:25084600-25084619 | Msa0064120:intron | 20.0% |
!! | TTATAAAGCATACAACATTA+TGG | + | chr1_2:25085119-25085138 | Msa0064120:intron | 20.0% |
!! | AAATGATTTCACAAAGTAAA+CGG | - | chr1_2:25085146-25085165 | None:intergenic | 20.0% |
!!! | AATGCATATGATTTTTGTTT+GGG | + | chr1_2:25085581-25085600 | Msa0064120:CDS | 20.0% |
!!! | CTTTTCAATGAATATTTGTT+TGG | + | chr1_2:25085779-25085798 | Msa0064120:intron | 20.0% |
!! | TTTCATTTGTTTGTTTATGT+TGG | + | chr1_2:25086561-25086580 | Msa0064120:three_prime_UTR | 20.0% |
! | GAGAGATATAATAACTTTCT+TGG | + | chr1_2:25082879-25082898 | Msa0064120:five_prime_UTR | 25.0% |
! | GTAATCTATGAGAAACTAAA+AGG | + | chr1_2:25083658-25083677 | Msa0064120:intron | 25.0% |
! | CATTAGAATATGGAAATTTC+TGG | + | chr1_2:25083928-25083947 | Msa0064120:CDS | 25.0% |
!! | AATCATCTTGATCTTCTTTT+CGG | + | chr1_2:25084218-25084237 | Msa0064120:CDS | 25.0% |
! | TCGTAAGTACTTTAATTCAT+TGG | + | chr1_2:25084245-25084264 | Msa0064120:intron | 25.0% |
!!! | TGTTTTCATGAACTTTTTTC+AGG | + | chr1_2:25084448-25084467 | Msa0064120:intron | 25.0% |
!!! | GTTTTCATGAACTTTTTTCA+GGG | + | chr1_2:25084449-25084468 | Msa0064120:intron | 25.0% |
! | TTCCATTGTAAGCAAATTAA+AGG | + | chr1_2:25084512-25084531 | Msa0064120:CDS | 25.0% |
! | AAATTATGTGTGTATATTGC+AGG | + | chr1_2:25084712-25084731 | Msa0064120:intron | 25.0% |
!! | GGTTAGTTAATATTCAAATG+TGG | + | chr1_2:25084867-25084886 | Msa0064120:intron | 25.0% |
! | TTGAAAATCAGTAGCAAAAT+CGG | + | chr1_2:25085038-25085057 | Msa0064120:intron | 25.0% |
! | AAATCATATGCATTGCATTA+TGG | - | chr1_2:25085575-25085594 | None:intergenic | 25.0% |
!! | CAATGCATATGATTTTTGTT+TGG | + | chr1_2:25085580-25085599 | Msa0064120:CDS | 25.0% |
!!! | ATGCATATGATTTTTGTTTG+GGG | + | chr1_2:25085582-25085601 | Msa0064120:CDS | 25.0% |
! | TTGCAAAATTTGTACTTACA+AGG | - | chr1_2:25085710-25085729 | None:intergenic | 25.0% |
! | TGAATGTGAATCAGATTAAA+GGG | + | chr1_2:25085824-25085843 | Msa0064120:intron | 25.0% |
!! | GGAATTATTTGTTGAATGTT+TGG | + | chr1_2:25086502-25086521 | Msa0064120:three_prime_UTR | 25.0% |
!! | ATTTAAAACAACCCATTCAA+GGG | - | chr1_2:25086621-25086640 | None:intergenic | 25.0% |
!! | TATTTAAAACAACCCATTCA+AGG | - | chr1_2:25086622-25086641 | None:intergenic | 25.0% |
!!! | GAATGGGTTGTTTTAAATAA+TGG | + | chr1_2:25086623-25086642 | Msa0064120:three_prime_UTR | 25.0% |
CAGAAATATGCTTCAGTTTA+CGG | - | chr1_2:25083292-25083311 | None:intergenic | 30.0% | |
CCAAATACATGTATACAAGT+TGG | - | chr1_2:25083481-25083500 | None:intergenic | 30.0% | |
CCAACTTGTATACATGTATT+TGG | + | chr1_2:25083478-25083497 | Msa0064120:intron | 30.0% | |
TTCTCATAGATTACTTCCAA+CGG | - | chr1_2:25083652-25083671 | None:intergenic | 30.0% | |
! | GCTGCATTTTCATTAGAATA+TGG | + | chr1_2:25083918-25083937 | Msa0064120:CDS | 30.0% |
TTGGAAAAGCTTTCAACAAA+AGG | + | chr1_2:25084101-25084120 | Msa0064120:CDS | 30.0% | |
TGGAAAAGCTTTCAACAAAA+GGG | + | chr1_2:25084102-25084121 | Msa0064120:CDS | 30.0% | |
! | TTGTGTATTGACATGTAGTA+AGG | + | chr1_2:25084378-25084397 | Msa0064120:intron | 30.0% |
GGTTAACGTGTCAATTAATA+TGG | + | chr1_2:25084399-25084418 | Msa0064120:intron | 30.0% | |
AATTAATATGGATCAGACAG+AGG | + | chr1_2:25084411-25084430 | Msa0064120:intron | 30.0% | |
!! | AGCCTTTAATTTGCTTACAA+TGG | - | chr1_2:25084517-25084536 | None:intergenic | 30.0% |
AATTAAAGGCTCATCTTACA+AGG | + | chr1_2:25084526-25084545 | Msa0064120:CDS | 30.0% | |
AAACCTCAACAATTTCTGTT+GGG | - | chr1_2:25084780-25084799 | None:intergenic | 30.0% | |
AAAACCTCAACAATTTCTGT+TGG | - | chr1_2:25084781-25084800 | None:intergenic | 30.0% | |
!! | AGAAATTGTTGAGGTTTTGA+AGG | + | chr1_2:25084783-25084802 | Msa0064120:CDS | 30.0% |
AAGAAGATTTCAAGATCTTG+TGG | + | chr1_2:25085364-25085383 | Msa0064120:CDS | 30.0% | |
! | AAATTCAGCTTTGTGAAGTA+GGG | - | chr1_2:25085412-25085431 | None:intergenic | 30.0% |
TGGATAAACCTTCTTCATTT+CGG | - | chr1_2:25085676-25085695 | None:intergenic | 30.0% | |
AATTTGTACTTACAAGGTCT+TGG | - | chr1_2:25085704-25085723 | None:intergenic | 30.0% | |
GTGAATGTGAATCAGATTAA+AGG | + | chr1_2:25085823-25085842 | Msa0064120:intron | 30.0% | |
GAATGTGAATCAGATTAAAG+GGG | + | chr1_2:25085825-25085844 | Msa0064120:intron | 30.0% | |
GACACATTCATCTTCATATA+CGG | + | chr1_2:25085847-25085866 | Msa0064120:CDS | 30.0% | |
TAGCAATCGAGAAAATCAAA+AGG | + | chr1_2:25085905-25085924 | Msa0064120:CDS | 30.0% | |
!!! | CTTTTGATTTCATCGATTGT+TGG | - | chr1_2:25086066-25086085 | None:intergenic | 30.0% |
!!! | TGGTTTTGATGTTGCTTTTA+AGG | + | chr1_2:25086227-25086246 | Msa0064120:CDS | 30.0% |
!!! | CTTTTAAGGAGTATTATGAG+AGG | + | chr1_2:25086241-25086260 | Msa0064120:CDS | 30.0% |
TAGGATCAAGAATATCTGAA+GGG | - | chr1_2:25086317-25086336 | None:intergenic | 30.0% | |
ATAGGATCAAGAATATCTGA+AGG | - | chr1_2:25086318-25086337 | None:intergenic | 30.0% | |
TTTGAATCAGGACAGTAAAT+AGG | - | chr1_2:25086336-25086355 | None:intergenic | 30.0% | |
!! | GTTTTGTTCAGATTGAGAAA+AGG | + | chr1_2:25086451-25086470 | Msa0064120:CDS | 30.0% |
!! | GGTTTGAAGTTTTTCCTTGT+TGG | - | chr1_2:25082964-25082983 | None:intergenic | 35.0% |
AAACTTCAAACCCATTAGCA+TGG | + | chr1_2:25082972-25082991 | Msa0064120:CDS | 35.0% | |
TATCATCACTCCATGCTAAT+GGG | - | chr1_2:25082985-25083004 | None:intergenic | 35.0% | |
TTATCATCACTCCATGCTAA+TGG | - | chr1_2:25082986-25083005 | None:intergenic | 35.0% | |
GTTGTGAGAAATGTATACCT+TGG | - | chr1_2:25083131-25083150 | None:intergenic | 35.0% | |
TATCATTTGTTTGGCAGACT+GGG | + | chr1_2:25083210-25083229 | Msa0064120:intron | 35.0% | |
ATATGCTTCAGTTTACGGAT+AGG | - | chr1_2:25083287-25083306 | None:intergenic | 35.0% | |
TCTAACCAAGACTTGAATCT+CGG | + | chr1_2:25083576-25083595 | Msa0064120:intron | 35.0% | |
! | TCTTTTCGACACTTTGAACA+CGG | - | chr1_2:25084010-25084029 | None:intergenic | 35.0% |
CAAACTGTTGTAATCAGCAA+TGG | - | chr1_2:25084042-25084061 | None:intergenic | 35.0% | |
! | CATTGCTGATTACAACAGTT+TGG | + | chr1_2:25084040-25084059 | Msa0064120:CDS | 35.0% |
TGTTGAGTGTATTACTGAGT+TGG | + | chr1_2:25084082-25084101 | Msa0064120:CDS | 35.0% | |
!! | AGATTCCTGTTGCTGTTTAT+TGG | + | chr1_2:25084168-25084187 | Msa0064120:CDS | 35.0% |
!! | GATTCCTGTTGCTGTTTATT+GGG | + | chr1_2:25084169-25084188 | Msa0064120:CDS | 35.0% |
!!! | GAACTTTTTTCAGGGATGAT+AGG | + | chr1_2:25084457-25084476 | Msa0064120:intron | 35.0% |
AACCTCAACAATTTCTGTTG+GGG | - | chr1_2:25084779-25084798 | None:intergenic | 35.0% | |
AGTCTTCCACAATGAAATTC+AGG | + | chr1_2:25084810-25084829 | Msa0064120:CDS | 35.0% | |
ATTGTTAGCGACCAATATAG+CGG | - | chr1_2:25084951-25084970 | None:intergenic | 35.0% | |
ATTAACGCGGAAATTAGAGA+CGG | - | chr1_2:25085198-25085217 | None:intergenic | 35.0% | |
AATTTCCGCGTTAATTCAAC+AGG | + | chr1_2:25085203-25085222 | Msa0064120:intron | 35.0% | |
! | CATGTGTTGGTATTCATTTC+AGG | + | chr1_2:25085252-25085271 | Msa0064120:CDS | 35.0% |
GAAGAACCAAGAGAACTAAA+AGG | + | chr1_2:25085333-25085352 | Msa0064120:CDS | 35.0% | |
!!! | CTGTATCCTTTTAGTTCTCT+TGG | - | chr1_2:25085342-25085361 | None:intergenic | 35.0% |
! | CAAATTCAGCTTTGTGAAGT+AGG | - | chr1_2:25085413-25085432 | None:intergenic | 35.0% |
ATGAGTCACTTACTCAAAAG+TGG | + | chr1_2:25085637-25085656 | Msa0064120:CDS | 35.0% | |
!!! | TCAAAAGTGGAACTGGTTTT+GGG | + | chr1_2:25085650-25085669 | Msa0064120:CDS | 35.0% |
ACATTCATCTTCATATACGG+AGG | + | chr1_2:25085850-25085869 | Msa0064120:CDS | 35.0% | |
! | CAAAGTCATGTGTCCATTTT+GGG | - | chr1_2:25085882-25085901 | None:intergenic | 35.0% |
! | TATTACTGCATCAGCTTTTC+GGG | - | chr1_2:25085941-25085960 | None:intergenic | 35.0% |
! | CTATTACTGCATCAGCTTTT+CGG | - | chr1_2:25085942-25085961 | None:intergenic | 35.0% |
! | GTAATAGAGCATTTCCACTT+CGG | + | chr1_2:25085955-25085974 | Msa0064120:CDS | 35.0% |
! | TTTTGTCTTCTTTTCCGAAG+TGG | - | chr1_2:25085972-25085991 | None:intergenic | 35.0% |
TTCAAACTGTGGAAGAACAA+TGG | + | chr1_2:25086350-25086369 | Msa0064120:CDS | 35.0% | |
AAGGTCTTGATGTGTTTGTT+TGG | + | chr1_2:25086470-25086489 | Msa0064120:exon | 35.0% | |
TCTTGATGTGTTTGTTTGGT+TGG | + | chr1_2:25086474-25086493 | Msa0064120:exon | 35.0% | |
!! | ATCTCTCTTTGGAGCTACTA+TGG | - | chr1_2:25082866-25082885 | None:intergenic | 40.0% |
ACATTACTTGCAAGTGAAGC+TGG | - | chr1_2:25082929-25082948 | None:intergenic | 40.0% | |
GTGGACATGAGTTAGGTAAA+CGG | - | chr1_2:25083020-25083039 | None:intergenic | 40.0% | |
GTATCATTTGTTTGGCAGAC+TGG | + | chr1_2:25083209-25083228 | Msa0064120:intron | 40.0% | |
TTTAGCCGAGATTCAAGTCT+TGG | - | chr1_2:25083584-25083603 | None:intergenic | 40.0% | |
AGACTTGAATCTCGGCTAAA+AGG | + | chr1_2:25083584-25083603 | Msa0064120:intron | 40.0% | |
TGCAATAAGATTACCTCCGT+TGG | + | chr1_2:25083633-25083652 | Msa0064120:intron | 40.0% | |
TCATAGATTACTTCCAACGG+AGG | - | chr1_2:25083649-25083668 | None:intergenic | 40.0% | |
ACATTGTTGTCATGTGAGCA+TGG | - | chr1_2:25083842-25083861 | None:intergenic | 40.0% | |
ATCAGCTGAAATCCCATACA+TGG | + | chr1_2:25083871-25083890 | Msa0064120:CDS | 40.0% | |
TCAGCTGAAATCCCATACAT+GGG | + | chr1_2:25083872-25083891 | Msa0064120:CDS | 40.0% | |
! | TGCTTTTCCATCCCATGTAT+GGG | - | chr1_2:25083886-25083905 | None:intergenic | 40.0% |
!! | TTGCTTTTCCATCCCATGTA+TGG | - | chr1_2:25083887-25083906 | None:intergenic | 40.0% |
ATAGCCCAATAAACAGCAAC+AGG | - | chr1_2:25084176-25084195 | None:intergenic | 40.0% | |
! | ACAAGGAGCAGAAAGCATAT+AGG | + | chr1_2:25084543-25084562 | Msa0064120:CDS | 40.0% |
AAGATTACTGGAGACGTAAG+AGG | + | chr1_2:25084743-25084762 | Msa0064120:CDS | 40.0% | |
AGATTACTGGAGACGTAAGA+GGG | + | chr1_2:25084744-25084763 | Msa0064120:CDS | 40.0% | |
AACCCCAACAGAAATTGTTG+AGG | + | chr1_2:25084774-25084793 | Msa0064120:CDS | 40.0% | |
TTCAAGCCATCAAAGACAAG+GGG | - | chr1_2:25084838-25084857 | None:intergenic | 40.0% | |
GTTCAAGCCATCAAAGACAA+GGG | - | chr1_2:25084839-25084858 | None:intergenic | 40.0% | |
TGTTCAAGCCATCAAAGACA+AGG | - | chr1_2:25084840-25084859 | None:intergenic | 40.0% | |
TGATGGCTTGAACAGACAAA+TGG | + | chr1_2:25084846-25084865 | Msa0064120:CDS | 40.0% | |
GACTGAATTGTCCGCTATAT+TGG | + | chr1_2:25084937-25084956 | Msa0064120:intron | 40.0% | |
TAGCAAAATCGGTTGCTAGA+GGG | + | chr1_2:25085049-25085068 | Msa0064120:intron | 40.0% | |
GCTAACCTGTTGAATTAACG+CGG | - | chr1_2:25085211-25085230 | None:intergenic | 40.0% | |
! | AGGTTAGCATCGAAGTGTTT+AGG | + | chr1_2:25085223-25085242 | Msa0064120:intron | 40.0% |
! | TTAGCATCGAAGTGTTTAGG+AGG | + | chr1_2:25085226-25085245 | Msa0064120:CDS | 40.0% |
ACTTGAAGCTAGAAATGCCA+TGG | + | chr1_2:25085436-25085455 | Msa0064120:CDS | 40.0% | |
AAGTACTCAACCACATACCA+TGG | - | chr1_2:25085456-25085475 | None:intergenic | 40.0% | |
ATCAACCTTATTCCAGCCAA+GGG | - | chr1_2:25085483-25085502 | None:intergenic | 40.0% | |
TATCAACCTTATTCCAGCCA+AGG | - | chr1_2:25085484-25085503 | None:intergenic | 40.0% | |
GTAAGTGACTCATCATCTGT+GGG | - | chr1_2:25085630-25085649 | None:intergenic | 40.0% | |
AGTAAGTGACTCATCATCTG+TGG | - | chr1_2:25085631-25085650 | None:intergenic | 40.0% | |
CACTTACTCAAAAGTGGAAC+TGG | + | chr1_2:25085643-25085662 | Msa0064120:CDS | 40.0% | |
!! | CTCAAAAGTGGAACTGGTTT+TGG | + | chr1_2:25085649-25085668 | Msa0064120:CDS | 40.0% |
! | GCAAAGTCATGTGTCCATTT+TGG | - | chr1_2:25085883-25085902 | None:intergenic | 40.0% |
AAAGAATCGTTCCTCGTTTC+TGG | + | chr1_2:25085989-25086008 | Msa0064120:CDS | 40.0% | |
TCAAATGTATGCAACTGCTG+TGG | + | chr1_2:25086167-25086186 | Msa0064120:CDS | 40.0% | |
!!! | CTGCTGTGGATTTTGAGATA+TGG | + | chr1_2:25086181-25086200 | Msa0064120:CDS | 40.0% |
!! | GAAAAAGTGCTTGAGAAAGC+TGG | + | chr1_2:25086207-25086226 | Msa0064120:CDS | 40.0% |
TGCATATTAGCACAAGCAAC+AGG | - | chr1_2:25086282-25086301 | None:intergenic | 40.0% | |
TGCTTGTGCTAATATGCAGT+TGG | + | chr1_2:25086284-25086303 | Msa0064120:CDS | 40.0% | |
TACTGTCCTGATTCAAACTG+TGG | + | chr1_2:25086339-25086358 | Msa0064120:CDS | 40.0% | |
GTTCTTCCACAGTTTGAATC+AGG | - | chr1_2:25086348-25086367 | None:intergenic | 40.0% | |
!! | GTGTTTGTTTGGTTGGTTTC+TGG | + | chr1_2:25086481-25086500 | Msa0064120:three_prime_UTR | 40.0% |
GCCTAACATGTCGTCTTCAA+TGG | + | chr1_2:25082901-25082920 | Msa0064120:exon | 45.0% | |
GCCATTGAAGACGACATGTT+AGG | - | chr1_2:25082905-25082924 | None:intergenic | 45.0% | |
GTGTCAGCTTATAGCCAACA+AGG | + | chr1_2:25082947-25082966 | Msa0064120:CDS | 45.0% | |
GAGTTAGGTAAACGGTTTCG+AGG | - | chr1_2:25083012-25083031 | None:intergenic | 45.0% | |
TACCTAACTCATGTCCACAC+CGG | + | chr1_2:25083022-25083041 | Msa0064120:CDS | 45.0% | |
TTCCACATCGTACCTTTCAC+CGG | - | chr1_2:25083044-25083063 | None:intergenic | 45.0% | |
CTGTCTTCTACAAGACCTAC+AGG | - | chr1_2:25083239-25083258 | None:intergenic | 45.0% | |
GAAGACAGACTTCCCTTATC+TGG | + | chr1_2:25083251-25083270 | Msa0064120:CDS | 45.0% | |
GGAGGCTCATAACCAGATAA+GGG | - | chr1_2:25083266-25083285 | None:intergenic | 45.0% | |
AGGAGGCTCATAACCAGATA+AGG | - | chr1_2:25083267-25083286 | None:intergenic | 45.0% | |
TGCTTCAGTTTACGGATAGG+AGG | - | chr1_2:25083284-25083303 | None:intergenic | 45.0% | |
! | ACTGAAGCATATTTCTGCCC+AGG | + | chr1_2:25083295-25083314 | Msa0064120:CDS | 45.0% |
TAGATGATGAGCACACTTCC+TGG | + | chr1_2:25083810-25083829 | Msa0064120:intron | 45.0% | |
CTGAAATCCCATACATGGGA+TGG | + | chr1_2:25083876-25083895 | Msa0064120:CDS | 45.0% | |
CACCTAGTTCAAACACCAAG+TGG | + | chr1_2:25083951-25083970 | Msa0064120:CDS | 45.0% | |
!! | CACCACTTGGTGTTTGAACT+AGG | - | chr1_2:25083956-25083975 | None:intergenic | 45.0% |
TGCATAGCTTCAGACAAAGC+AGG | - | chr1_2:25084146-25084165 | None:intergenic | 45.0% | |
CAGGTGAGCTAGAAGATTAC+TGG | + | chr1_2:25084731-25084750 | Msa0064120:intron | 45.0% | |
TCAAGCCATCAAAGACAAGG+GGG | - | chr1_2:25084837-25084856 | None:intergenic | 45.0% | |
GTAGCAAAATCGGTTGCTAG+AGG | + | chr1_2:25085048-25085067 | Msa0064120:intron | 45.0% | |
! | GTTTAGGAGGAAGCATGTGT+TGG | + | chr1_2:25085239-25085258 | Msa0064120:CDS | 45.0% |
TCTCGTCTCTTATGCTGTCT+AGG | - | chr1_2:25085278-25085297 | None:intergenic | 45.0% | |
CTTCTTCAATCCATCTACGC+TGG | + | chr1_2:25085303-25085322 | Msa0064120:CDS | 45.0% | |
TTCTTGTAGTCCAGCGTAGA+TGG | - | chr1_2:25085316-25085335 | None:intergenic | 45.0% | |
GATCTTGTGGATCCCAATTG+TGG | + | chr1_2:25085377-25085396 | Msa0064120:CDS | 45.0% | |
GGATCCCAATTGTGGATGAT+TGG | + | chr1_2:25085385-25085404 | Msa0064120:CDS | 45.0% | |
GGGTCCAATCATCCACAATT+GGG | - | chr1_2:25085392-25085411 | None:intergenic | 45.0% | |
AGGGTCCAATCATCCACAAT+TGG | - | chr1_2:25085393-25085412 | None:intergenic | 45.0% | |
GCTAGAAATGCCATGGTATG+TGG | + | chr1_2:25085443-25085462 | Msa0064120:CDS | 45.0% | |
GGTTGAGTACTTCTATCCCT+TGG | + | chr1_2:25085464-25085483 | Msa0064120:CDS | 45.0% | |
TCTATCCCTTGGCTGGAATA+AGG | + | chr1_2:25085475-25085494 | Msa0064120:CDS | 45.0% | |
GGGTTCAGAACAGGTAGAAT+TGG | - | chr1_2:25085534-25085553 | None:intergenic | 45.0% | |
GGTTCACAATCCTACCTAGA+GGG | - | chr1_2:25085554-25085573 | None:intergenic | 45.0% | |
TGGTTCACAATCCTACCTAG+AGG | - | chr1_2:25085555-25085574 | None:intergenic | 45.0% | |
CATCATCTGTGGGACGAAAA+GGG | - | chr1_2:25085620-25085639 | None:intergenic | 45.0% | |
TCATCATCTGTGGGACGAAA+AGG | - | chr1_2:25085621-25085640 | None:intergenic | 45.0% | |
!! | GTTTTGGGCCGAAATGAAGA+AGG | + | chr1_2:25085665-25085684 | Msa0064120:CDS | 45.0% |
CTTACAAGGTCTTGGAGTCT+TGG | - | chr1_2:25085696-25085715 | None:intergenic | 45.0% | |
! | ATCGTTCCTCGTTTCTGGAT+TGG | + | chr1_2:25085994-25086013 | Msa0064120:CDS | 45.0% |
TCTATGCCAATCCAGAAACG+AGG | - | chr1_2:25086003-25086022 | None:intergenic | 45.0% | |
TTGCTTAGTAGAACCCAACC+TGG | - | chr1_2:25086114-25086133 | None:intergenic | 45.0% | |
GGTTGGGTTCTACTAAGCAA+AGG | + | chr1_2:25086114-25086133 | Msa0064120:CDS | 45.0% | |
GGACCAAATGTGAAACTGCT+CGG | + | chr1_2:25086135-25086154 | Msa0064120:CDS | 45.0% | |
! | GTTAGCTACAAGTGTTGCCA+TGG | + | chr1_2:25086384-25086403 | Msa0064120:CDS | 45.0% |
!! | AAAAATTAAAAAATTAACTT+AGG | + | chr1_2:25083723-25083742 | Msa0064120:intron | 5.0% |
!! | AAAATAATTAATGATATTAA+TGG | + | chr1_2:25084349-25084368 | Msa0064120:intron | 5.0% |
AACACTATCAGCGACTGCAC+TGG | - | chr1_2:25083104-25083123 | None:intergenic | 50.0% | |
! | CGCTGATAGTGTTGCATCCA+AGG | + | chr1_2:25083111-25083130 | Msa0064120:CDS | 50.0% |
ACACCAAGTGGTGACTCACT+TGG | + | chr1_2:25083963-25083982 | Msa0064120:CDS | 50.0% | |
CTTCCAAGTGAGTCACCACT+TGG | - | chr1_2:25083969-25083988 | None:intergenic | 50.0% | |
GGGGGTCCTGAATTTCATTG+TGG | - | chr1_2:25084819-25084838 | None:intergenic | 50.0% | |
GAGTACTTCTATCCCTTGGC+TGG | + | chr1_2:25085468-25085487 | Msa0064120:CDS | 50.0% | |
! | CTACCTGTTCTGAACCCTCT+AGG | + | chr1_2:25085537-25085556 | Msa0064120:CDS | 50.0% |
CTACCTAGAGGGTTCAGAAC+AGG | - | chr1_2:25085543-25085562 | None:intergenic | 50.0% | |
! | CTGTTCTGAACCCTCTAGGT+AGG | + | chr1_2:25085541-25085560 | Msa0064120:CDS | 50.0% |
ACGGAGGAACAGACCCAAAA+TGG | + | chr1_2:25085866-25085885 | Msa0064120:CDS | 50.0% | |
TGTCTCAAACAAGACCAGCC+AGG | + | chr1_2:25086093-25086112 | Msa0064120:CDS | 50.0% | |
TCAAACAAGACCAGCCAGGT+TGG | + | chr1_2:25086097-25086116 | Msa0064120:CDS | 50.0% | |
CAAACAAGACCAGCCAGGTT+GGG | + | chr1_2:25086098-25086117 | Msa0064120:CDS | 50.0% | |
TTAGTAGAACCCAACCTGGC+TGG | - | chr1_2:25086110-25086129 | None:intergenic | 50.0% | |
CGACCGAGCAGTTTCACATT+TGG | - | chr1_2:25086141-25086160 | None:intergenic | 50.0% | |
AATGTGAAACTGCTCGGTCG+CGG | + | chr1_2:25086141-25086160 | Msa0064120:CDS | 50.0% | |
CGTTCTCGTGAGTATGACCA+TGG | - | chr1_2:25086404-25086423 | None:intergenic | 50.0% | |
ACAAAACCACCACTCTCAGC+AGG | - | chr1_2:25086438-25086457 | None:intergenic | 50.0% | |
CCTTCTGTGTGCCCTTGAAT+GGG | + | chr1_2:25086607-25086626 | Msa0064120:three_prime_UTR | 50.0% | |
CACCGGTGTGGACATGAGTT+AGG | - | chr1_2:25083027-25083046 | None:intergenic | 55.0% | |
CTCATGTCCACACCGGTGAA+AGG | + | chr1_2:25083029-25083048 | Msa0064120:CDS | 55.0% | |
CATCGTACCTTTCACCGGTG+TGG | - | chr1_2:25083039-25083058 | None:intergenic | 55.0% | |
! | CACCGGTGAAAGGTACGATG+TGG | + | chr1_2:25083039-25083058 | Msa0064120:CDS | 55.0% |
ATGTGAGCATGGTGCTCACC+AGG | - | chr1_2:25083831-25083850 | None:intergenic | 55.0% | |
CAGGACCCCCTTGTCTTTGA+TGG | + | chr1_2:25084829-25084848 | Msa0064120:CDS | 55.0% | |
AAACCACCACTCTCAGCAGG+AGG | - | chr1_2:25086435-25086454 | None:intergenic | 55.0% | |
GCCTTCTGTGTGCCCTTGAA+TGG | + | chr1_2:25086606-25086625 | Msa0064120:three_prime_UTR | 55.0% | |
! | CCCATTCAAGGGCACACAGA+AGG | - | chr1_2:25086610-25086629 | None:intergenic | 55.0% |
TGGCAGACTGGGACTCCTGT+AGG | + | chr1_2:25083221-25083240 | Msa0064120:intron | 60.0% | |
GAAGCTCCTCCTGCTGAGAG+TGG | + | chr1_2:25086426-25086445 | Msa0064120:CDS | 60.0% | |
GCTCCTCCTGCTGAGAGTGG+TGG | + | chr1_2:25086429-25086448 | Msa0064120:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_2 | gene | 25082847 | 25086768 | 25082847 | ID=Msa0064120;Name=Msa0064120 |
chr1_2 | mRNA | 25082847 | 25086768 | 25082847 | ID=Msa0064120-mRNA-1;Parent=Msa0064120;Name=Msa0064120-mRNA-1;_AED=0.04;_eAED=0.04;_QI=61|1|1|1|1|1|7|289|701 |
chr1_2 | exon | 25082847 | 25083132 | 25082847 | ID=Msa0064120-mRNA-1:exon:8965;Parent=Msa0064120-mRNA-1 |
chr1_2 | exon | 25083227 | 25083316 | 25083227 | ID=Msa0064120-mRNA-1:exon:8966;Parent=Msa0064120-mRNA-1 |
chr1_2 | exon | 25083813 | 25084246 | 25083813 | ID=Msa0064120-mRNA-1:exon:8967;Parent=Msa0064120-mRNA-1 |
chr1_2 | exon | 25084470 | 25084564 | 25084470 | ID=Msa0064120-mRNA-1:exon:8968;Parent=Msa0064120-mRNA-1 |
chr1_2 | exon | 25084734 | 25084867 | 25084734 | ID=Msa0064120-mRNA-1:exon:8969;Parent=Msa0064120-mRNA-1 |
chr1_2 | exon | 25085225 | 25085710 | 25085225 | ID=Msa0064120-mRNA-1:exon:8970;Parent=Msa0064120-mRNA-1 |
chr1_2 | exon | 25085838 | 25086768 | 25085838 | ID=Msa0064120-mRNA-1:exon:8971;Parent=Msa0064120-mRNA-1 |
chr1_2 | five_prime_UTR | 25082847 | 25082907 | 25082847 | ID=Msa0064120-mRNA-1:five_prime_utr;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25082908 | 25083132 | 25082908 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25083227 | 25083316 | 25083227 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25083813 | 25084246 | 25083813 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25084470 | 25084564 | 25084470 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25084734 | 25084867 | 25084734 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25085225 | 25085710 | 25085225 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | CDS | 25085838 | 25086479 | 25085838 | ID=Msa0064120-mRNA-1:cds;Parent=Msa0064120-mRNA-1 |
chr1_2 | three_prime_UTR | 25086480 | 25086768 | 25086480 | ID=Msa0064120-mRNA-1:three_prime_utr;Parent=Msa0064120-mRNA-1 |
Gene Sequence |
Protein sequence |