AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1216990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216990 MtrunA17_Chr4g0066581 96.537 231 8 0 1 231 1 231 7.38e-160 455
Msa1216990 MtrunA17_Chr4g0066581 80.952 105 19 1 206 309 386 490 4.73e-46 162
Msa1216990 MtrunA17_Chr2g0286721 80.952 231 41 1 1 231 1 228 1.24e-135 393
Msa1216990 MtrunA17_Chr2g0286721 69.725 109 31 2 201 307 377 485 3.21e-40 146
Msa1216990 MtrunA17_Chr7g0259221 54.656 247 102 3 1 247 1 237 2.27e-80 251
Msa1216990 MtrunA17_Chr7g0259221 54.369 103 46 1 206 307 375 477 1.15e-27 112
Msa1216990 MtrunA17_Chr7g0259471 51.837 245 108 3 3 247 1 235 1.29e-79 249
Msa1216990 MtrunA17_Chr7g0259471 51.456 103 49 1 206 307 373 475 8.97e-25 103
Msa1216990 MtrunA17_Chr7g0273271 50.952 210 101 1 29 236 2 211 1.44e-70 218
Msa1216990 MtrunA17_Chr7g0273281 58.192 177 74 0 55 231 65 241 1.06e-66 216
Msa1216990 MtrunA17_Chr7g0273281 55.285 123 50 2 191 308 376 498 6.72e-32 124
Msa1216990 MtrunA17_Chr8g0373181 49.774 221 99 2 18 231 11 226 4.03e-66 214
Msa1216990 MtrunA17_Chr8g0373181 46.739 92 41 2 219 306 399 486 1.11e-17 83.2
Msa1216990 MtrunA17_Chr5g0404191 46.875 224 113 2 13 231 7 229 3.99e-65 207
Msa1216990 MtrunA17_Chr1g0155221 47.465 217 111 1 18 231 12 228 4.52e-63 207
Msa1216990 MtrunA17_Chr1g0155221 33.136 169 102 2 144 302 318 485 1.73e-16 79.7
Msa1216990 MtrunA17_Chr8g0373191 46.009 213 92 3 19 231 9 198 3.47e-51 175
Msa1216990 MtrunA17_Chr8g0373191 36.066 122 70 2 191 304 335 456 1.46e-13 70.9
Msa1216990 MtrunA17_Chr7g0273261 57.843 102 42 1 206 306 137 238 8.20e-29 111
Msa1216990 MtrunA17_Chr7g0214451 41.732 127 69 1 110 231 94 220 7.16e-21 92.8
Msa1216990 MtrunA17_Chr4g0021771 27.391 230 160 1 16 238 19 248 2.69e-20 90.9
Msa1216990 MtrunA17_Chr3g0144361 28.507 221 145 3 36 249 14 228 3.71e-20 90.5
Msa1216990 MtrunA17_Chr1g0213631 38.400 125 72 1 112 231 48 172 6.34e-20 89.7
Msa1216990 MtrunA17_Chr7g0250881 30.275 218 142 4 22 231 36 251 1.02e-19 89.4
Msa1216990 MtrunA17_Chr5g0404181 52.113 71 34 0 232 302 58 128 1.55e-19 83.2
Msa1216990 MtrunA17_Chr4g0034681 26.872 227 153 3 30 249 10 230 1.79e-19 88.6
Msa1216990 MtrunA17_Chr6g0457781 32.821 195 122 3 45 231 98 291 1.80e-19 88.6
Msa1216990 MtrunA17_Chr1g0213611 33.659 205 128 3 35 231 61 265 3.45e-19 87.8
Msa1216990 MtrunA17_Chr5g0432581 29.268 205 132 4 37 232 7 207 4.22e-19 87.4
Msa1216990 MtrunA17_Chr8g0390521 29.665 209 131 6 38 233 1 206 5.90e-19 87.0
Msa1216990 MtrunA17_Chr2g0303731 31.383 188 121 2 52 231 26 213 1.91e-18 85.9
Msa1216990 MtrunA17_Chr2g0282031 31.492 181 117 1 59 232 60 240 5.45e-18 84.3
Msa1216990 MtrunA17_Chr3g0144261 34.375 160 98 2 80 232 32 191 1.71e-17 83.2
Msa1216990 MtrunA17_Chr4g0039651 27.092 251 154 6 19 244 4 250 3.02e-17 82.0
Msa1216990 MtrunA17_Chr6g0485661 27.570 214 143 3 26 232 37 245 5.13e-17 81.3
Msa1216990 MtrunA17_Chr8g0376611 33.088 136 86 1 101 231 11 146 4.80e-16 78.6
Msa1216990 MtrunA17_Chr8g0373531 30.460 174 113 2 67 232 34 207 3.88e-15 75.9
Msa1216990 MtrunA17_Chr3g0119401 29.891 184 116 4 58 231 99 279 6.65e-15 75.1
Msa1216990 MtrunA17_Chr4g0036021 27.684 177 121 1 63 232 38 214 7.41e-15 74.7
Msa1216990 MtrunA17_Chr2g0290181 31.496 127 82 1 110 231 88 214 1.07e-14 74.3
Msa1216990 MtrunA17_Chr3g0085971 28.659 164 110 1 76 232 66 229 3.35e-14 72.8
Msa1216990 MtrunA17_Chr4g0032021 32.759 174 107 4 67 233 119 289 3.38e-14 72.8
Msa1216990 MtrunA17_Chr6g0486021 27.727 220 141 4 29 231 18 236 9.28e-14 71.6
Msa1216990 MtrunA17_Chr1g0164871 27.650 217 131 3 42 232 13 229 1.96e-13 70.5
Msa1216990 MtrunA17_Chr7g0221631 51.515 66 31 1 206 270 50 115 2.35e-13 65.9
Msa1216990 MtrunA17_Chr1g0164851 27.650 217 131 3 42 232 13 229 2.54e-13 70.1
Msa1216990 MtrunA17_Chr5g0403831 29.379 177 117 3 80 249 59 234 2.68e-13 70.1
Msa1216990 MtrunA17_Chr5g0446681 27.039 233 148 4 85 301 39 265 3.77e-13 68.6
Msa1216990 MtrunA17_Chr2g0303701 30.400 125 82 1 112 231 89 213 5.05e-13 69.3
Msa1216990 MtrunA17_Chr8g0376631 32.283 127 81 1 110 231 87 213 5.08e-13 69.3
Msa1216990 MtrunA17_Chr5g0434231 31.298 131 71 1 101 231 14 125 5.44e-13 65.9
Msa1216990 MtrunA17_Chr5g0417611 29.762 168 105 4 77 232 65 231 8.15e-13 68.6
Msa1216990 MtrunA17_Chr4g0004821 29.412 187 123 4 53 231 37 222 8.81e-13 68.6
Msa1216990 MtrunA17_Chr8g0376601 32.000 125 80 1 112 231 89 213 1.13e-12 68.6
Msa1216990 MtrunA17_Chr5g0419321 25.862 174 120 3 66 232 50 221 1.91e-12 67.8
Msa1216990 MtrunA17_Chr3g0128081 30.872 149 94 3 92 232 83 230 3.01e-12 67.0
Msa1216990 MtrunA17_Chr3g0146061 33.939 165 94 5 80 232 32 193 3.14e-12 67.0
Msa1216990 MtrunA17_Chr7g0259451 66.667 39 13 0 232 270 12 50 6.57e-12 59.7
Msa1216990 MtrunA17_Chr5g0420841 30.405 148 96 1 92 232 82 229 8.45e-12 65.5
Msa1216990 MtrunA17_Chr3g0128171 29.054 148 98 1 92 232 36 183 9.32e-12 65.5
Msa1216990 MtrunA17_Chr3g0078791 29.054 148 98 1 92 232 28 175 1.25e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216990 AT5G18840.1 67.083 240 67 3 1 238 1 230 5.49e-106 318
Msa1216990 AT5G18840.1 59.322 118 43 3 194 306 362 479 8.64e-33 126
Msa1216990 AT2G48020.3 65.193 181 63 0 51 231 27 207 1.86e-83 256
Msa1216990 AT2G48020.4 65.193 181 63 0 51 231 27 207 2.05e-83 256
Msa1216990 AT2G48020.2 65.193 181 63 0 51 231 27 207 2.88e-82 256
Msa1216990 AT2G48020.2 64.000 75 27 0 232 306 388 462 2.32e-26 108
Msa1216990 AT2G48020.1 65.193 181 63 0 51 231 27 207 2.88e-82 256
Msa1216990 AT2G48020.1 64.000 75 27 0 232 306 388 462 2.32e-26 108
Msa1216990 AT3G05150.1 53.680 231 88 4 3 231 1 214 1.28e-75 239
Msa1216990 AT3G05150.1 56.436 101 43 1 206 305 369 469 1.37e-27 112
Msa1216990 AT3G05150.3 53.680 231 88 4 3 231 1 214 1.28e-75 239
Msa1216990 AT3G05150.3 56.436 101 43 1 206 305 369 469 1.37e-27 112
Msa1216990 AT3G05150.2 53.680 231 88 4 3 231 1 214 1.51e-75 239
Msa1216990 AT3G05150.2 56.436 101 43 1 206 305 369 469 1.58e-27 112
Msa1216990 AT1G54730.11 60.000 175 70 0 57 231 37 211 3.12e-71 224
Msa1216990 AT1G54730.10 60.000 175 70 0 57 231 37 211 4.71e-71 223
Msa1216990 AT1G54730.6 60.000 175 70 0 57 231 37 211 4.71e-71 223
Msa1216990 AT1G54730.8 60.000 175 70 0 57 231 37 211 1.87e-70 224
Msa1216990 AT1G54730.9 60.000 175 70 0 57 231 37 211 3.77e-70 223
Msa1216990 AT1G54730.7 60.000 175 70 0 57 231 37 211 3.77e-70 223
Msa1216990 AT1G54730.4 60.000 175 70 0 57 231 37 211 8.77e-70 223
Msa1216990 AT1G54730.4 47.143 70 36 1 206 274 344 413 2.02e-11 64.7
Msa1216990 AT1G54730.3 60.000 175 70 0 57 231 37 211 1.29e-69 223
Msa1216990 AT1G54730.3 47.143 70 36 1 206 274 365 434 2.53e-11 64.3
Msa1216990 AT1G54730.5 60.000 175 70 0 57 231 37 211 1.76e-69 223
Msa1216990 AT1G54730.5 53.061 98 45 1 206 302 344 441 1.06e-24 103
Msa1216990 AT1G54730.2 60.000 175 70 0 57 231 37 211 2.93e-69 223
Msa1216990 AT1G54730.2 53.061 98 45 1 206 302 365 462 1.59e-24 103
Msa1216990 AT3G20460.1 46.000 250 113 4 3 244 10 245 7.47e-67 217
Msa1216990 AT3G20460.1 49.474 95 40 2 216 306 397 487 6.09e-20 90.1
Msa1216990 AT1G75220.1 50.000 216 104 2 19 231 13 227 3.50e-64 210
Msa1216990 AT1G75220.1 50.000 72 36 0 232 303 413 484 4.61e-16 79.0
Msa1216990 AT1G19450.1 48.182 220 110 2 15 231 10 228 6.15e-64 209
Msa1216990 AT1G19450.1 55.556 72 32 0 232 303 414 485 9.10e-18 84.0
Msa1216990 AT1G08920.3 52.062 194 93 0 51 244 31 224 1.57e-60 199
Msa1216990 AT1G08920.1 50.000 206 103 0 39 244 19 224 2.24e-60 199
Msa1216990 AT1G08920.1 44.737 76 42 0 232 307 392 467 5.51e-16 78.6
Msa1216990 AT1G08920.2 50.000 206 103 0 39 244 19 224 2.70e-60 199
Msa1216990 AT1G08920.2 44.737 76 42 0 232 307 399 474 5.65e-16 78.6
Msa1216990 AT3G05155.2 45.854 205 111 0 27 231 2 206 2.80e-60 195
Msa1216990 AT3G05155.1 45.854 205 111 0 27 231 2 206 7.65e-59 195
Msa1216990 AT3G05155.1 52.000 75 36 0 232 306 385 459 1.25e-16 80.5
Msa1216990 AT5G27350.1 49.741 193 97 0 39 231 18 210 3.01e-58 194
Msa1216990 AT5G27350.1 42.975 121 58 2 196 305 344 464 9.46e-18 84.0
Msa1216990 AT5G27360.4 50.259 193 96 0 39 231 22 214 6.23e-58 192
Msa1216990 AT3G05400.1 48.958 192 98 0 40 231 14 205 7.99e-58 193
Msa1216990 AT3G05400.1 49.296 71 36 0 232 302 386 456 6.71e-14 72.4
Msa1216990 AT5G27360.1 50.259 193 96 0 39 231 22 214 1.12e-57 193
Msa1216990 AT5G27360.1 48.276 87 45 0 219 305 382 468 1.60e-17 83.2
Msa1216990 AT1G08930.1 50.521 192 95 0 40 231 46 237 1.42e-57 193
Msa1216990 AT1G08930.1 50.000 78 39 0 232 309 418 495 2.47e-20 91.7
Msa1216990 AT1G08930.2 50.521 192 95 0 40 231 46 237 1.42e-57 193
Msa1216990 AT1G08930.2 50.000 78 39 0 232 309 418 495 2.47e-20 91.7
Msa1216990 AT5G27360.3 50.259 193 96 0 39 231 70 262 3.23e-57 192
Msa1216990 AT5G27360.3 48.276 87 45 0 219 305 430 516 2.92e-17 82.4
Msa1216990 AT3G05165.3 42.523 214 111 1 18 231 8 209 2.04e-56 189
Msa1216990 AT3G05165.3 46.753 77 41 0 232 308 390 466 1.75e-18 85.9
Msa1216990 AT3G05165.2 42.523 214 111 1 18 231 8 209 2.04e-56 189
Msa1216990 AT3G05165.2 46.753 77 41 0 232 308 390 466 1.75e-18 85.9
Msa1216990 AT3G05165.1 42.523 214 111 1 18 231 8 209 2.04e-56 189
Msa1216990 AT3G05165.1 46.753 77 41 0 232 308 390 466 1.75e-18 85.9
Msa1216990 AT3G05165.4 42.523 214 111 1 18 231 8 209 2.35e-56 189
Msa1216990 AT3G05165.5 42.523 214 111 1 18 231 8 209 2.35e-56 189
Msa1216990 AT3G05165.6 42.523 214 111 1 18 231 8 209 3.97e-56 189
Msa1216990 AT1G08890.1 46.860 207 109 1 25 231 1 206 2.37e-54 184
Msa1216990 AT1G08890.1 51.648 91 44 0 215 305 370 460 8.98e-22 95.5
Msa1216990 AT1G08900.4 48.705 193 97 1 41 231 12 204 2.56e-54 183
Msa1216990 AT1G08900.1 48.705 193 97 1 41 231 12 204 3.55e-54 183
Msa1216990 AT1G08900.1 54.023 87 40 0 219 305 372 458 1.76e-22 97.4
Msa1216990 AT1G08900.2 48.705 193 97 1 41 231 12 204 3.55e-54 183
Msa1216990 AT1G08900.2 54.023 87 40 0 219 305 372 458 1.76e-22 97.4
Msa1216990 AT3G05160.1 45.146 206 113 0 39 244 8 213 7.25e-53 180
Msa1216990 AT3G05160.1 50.649 77 38 0 232 308 381 457 1.17e-18 86.3
Msa1216990 AT4G04750.1 42.512 207 118 1 26 231 9 215 2.77e-51 176
Msa1216990 AT4G04750.1 50.649 77 38 0 232 308 398 474 1.62e-18 86.3
Msa1216990 AT4G04750.2 42.512 207 118 1 26 231 9 215 2.77e-51 176
Msa1216990 AT4G04750.2 50.649 77 38 0 232 308 398 474 1.62e-18 86.3
Msa1216990 AT4G04760.2 46.927 179 95 0 53 231 32 210 3.05e-51 176
Msa1216990 AT4G04760.2 49.351 77 39 0 232 308 391 467 1.92e-18 85.9
Msa1216990 AT4G04760.1 46.927 179 95 0 53 231 32 210 3.37e-51 176
Msa1216990 AT4G04760.1 49.351 77 39 0 232 308 394 470 1.81e-18 85.9
Msa1216990 AT4G04750.3 42.718 206 117 1 27 231 54 259 7.84e-51 176
Msa1216990 AT4G04750.3 50.649 77 38 0 232 308 442 518 1.71e-18 86.3
Msa1216990 AT1G08900.5 49.383 162 82 0 70 231 1 162 1.86e-47 164
Msa1216990 AT1G08900.5 54.023 87 40 0 219 305 330 416 1.51e-22 97.4
Msa1216990 AT1G08900.3 46.114 193 94 2 41 231 12 196 3.72e-47 164
Msa1216990 AT1G08900.3 54.023 87 40 0 219 305 364 450 1.84e-22 97.4
Msa1216990 AT3G05400.2 44.271 192 87 1 40 231 14 185 1.63e-46 162
Msa1216990 AT3G05400.2 49.296 71 36 0 232 302 366 436 5.80e-14 72.4
Msa1216990 AT4G04760.3 46.980 149 79 0 83 231 3 151 1.51e-40 146
Msa1216990 AT4G04760.3 49.351 77 39 0 232 308 335 411 1.39e-18 85.9
Msa1216990 AT3G05160.3 45.062 162 89 0 83 244 3 164 1.34e-39 144
Msa1216990 AT3G05160.3 50.649 77 38 0 232 308 332 408 1.01e-18 86.3
Msa1216990 AT3G05160.2 45.062 162 89 0 83 244 3 164 1.34e-39 144
Msa1216990 AT3G05160.2 50.649 77 38 0 232 308 332 408 1.01e-18 86.3
Msa1216990 AT5G27360.2 52.727 110 52 0 122 231 1 110 1.17e-30 119
Msa1216990 AT5G27360.2 48.276 87 45 0 219 305 278 364 2.01e-17 82.4
Msa1216990 AT5G27360.5 52.727 110 52 0 122 231 1 110 1.17e-30 119
Msa1216990 AT5G27360.5 48.276 87 45 0 219 305 278 364 2.01e-17 82.4
Msa1216990 AT5G16150.2 33.166 199 122 3 43 232 96 292 6.93e-21 93.2
Msa1216990 AT5G16150.1 33.166 199 122 3 43 232 96 292 6.93e-21 93.2
Msa1216990 AT5G16150.3 33.166 199 122 3 43 232 96 292 6.93e-21 93.2
Msa1216990 AT2G16120.1 31.461 178 115 1 63 233 37 214 1.70e-19 89.0
Msa1216990 AT2G20780.1 29.224 219 147 2 21 232 25 242 5.07e-19 87.8
Msa1216990 AT2G43330.1 40.000 125 70 1 112 231 94 218 1.49e-18 86.3
Msa1216990 AT2G16130.1 31.073 177 115 1 63 232 37 213 1.91e-18 85.9
Msa1216990 AT2G18480.1 29.744 195 122 2 66 249 36 226 1.10e-17 83.6
Msa1216990 AT1G05030.1 33.803 213 121 7 34 231 58 265 2.16e-17 82.8
Msa1216990 AT2G20780.2 34.810 158 92 3 85 232 28 184 7.04e-17 81.3
Msa1216990 AT1G54730.1 56.452 62 27 0 103 164 1 62 1.01e-16 73.9
Msa1216990 AT1G20840.2 35.185 162 94 3 80 232 32 191 2.40e-16 80.1
Msa1216990 AT1G20840.1 35.185 162 94 3 80 232 32 191 2.40e-16 80.1
Msa1216990 AT2G35740.1 30.496 141 93 1 96 231 73 213 2.41e-16 79.7
Msa1216990 AT3G18830.1 25.229 218 148 3 23 233 15 224 3.36e-16 79.3
Msa1216990 AT1G05030.2 36.111 144 81 3 96 231 73 213 4.34e-16 79.0
Msa1216990 AT4G36670.1 30.851 188 123 1 58 238 23 210 1.29e-15 77.4
Msa1216990 AT5G17010.1 25.410 244 163 4 4 235 6 242 1.66e-15 77.0
Msa1216990 AT5G17010.3 25.410 244 163 4 4 235 6 242 1.66e-15 77.0
Msa1216990 AT5G17010.4 25.410 244 163 4 4 235 6 242 1.66e-15 77.0
Msa1216990 AT5G59250.1 28.436 211 139 2 34 232 80 290 2.73e-15 76.6
Msa1216990 AT4G16480.2 33.333 126 77 3 112 231 90 214 1.38e-14 74.7
Msa1216990 AT4G16480.3 33.333 126 77 3 112 231 90 214 1.38e-14 74.7
Msa1216990 AT4G16480.1 33.333 126 77 3 112 231 90 214 1.38e-14 74.7
Msa1216990 AT4G35300.4 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.8 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.6 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.11 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.1 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.10 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.7 33.333 171 87 5 80 232 32 193 5.75e-14 72.8
Msa1216990 AT4G35300.9 33.333 171 87 5 80 232 32 193 5.94e-14 72.8
Msa1216990 AT4G35300.2 33.333 171 87 5 80 232 32 193 5.94e-14 72.8
Msa1216990 AT4G35300.3 33.333 171 87 5 80 232 32 193 5.94e-14 72.8
Msa1216990 AT3G03090.1 27.751 209 137 4 38 233 33 240 6.03e-14 72.4
Msa1216990 AT5G17010.2 24.900 249 159 5 4 235 6 243 6.51e-14 72.4
Msa1216990 AT1G30220.1 33.600 125 76 3 113 231 92 215 1.41e-13 71.6
Msa1216990 AT3G51490.1 35.000 140 84 3 100 232 54 193 2.39e-13 70.9
Msa1216990 AT3G51490.2 35.000 140 84 3 100 232 54 193 2.68e-13 70.9
Msa1216990 AT3G51490.3 35.000 140 84 3 100 232 4 143 2.83e-13 70.9
Msa1216990 AT1G67300.6 26.577 222 153 4 18 231 18 237 9.27e-13 68.9
Msa1216990 AT1G67300.7 26.577 222 153 4 18 231 18 237 9.27e-13 68.9
Msa1216990 AT1G67300.2 26.577 222 153 4 18 231 18 237 1.06e-12 68.9
Msa1216990 AT1G67300.4 26.577 222 153 4 18 231 18 237 1.19e-12 68.6
Msa1216990 AT1G67300.5 26.577 222 153 4 18 231 18 237 1.19e-12 68.6
Msa1216990 AT1G67300.1 26.577 222 153 4 18 231 18 237 1.21e-12 68.6
Msa1216990 AT1G67300.3 26.577 222 153 4 18 231 18 237 1.21e-12 68.6
Msa1216990 AT5G26250.1 32.432 148 92 3 92 232 81 227 3.47e-12 67.4
Msa1216990 AT1G07340.1 34.247 146 91 2 92 232 82 227 4.01e-12 67.0
Msa1216990 AT5G23270.1 30.822 146 92 3 92 229 85 229 6.76e-12 66.2
Msa1216990 AT1G11260.1 31.544 149 93 3 92 232 83 230 1.25e-11 65.5
Msa1216990 AT3G19930.1 30.201 149 95 3 92 232 82 229 2.38e-11 64.7
Msa1216990 AT3G19930.2 30.201 149 95 3 92 232 82 229 2.38e-11 64.7
Msa1216990 AT4G21480.1 32.192 146 94 3 92 232 83 228 3.23e-11 64.3
Msa1216990 AT3G05960.1 30.405 148 95 3 92 232 80 226 6.49e-11 63.5
Msa1216990 AT1G79820.2 28.780 205 127 4 40 231 42 240 9.11e-11 62.8
Msa1216990 AT1G79820.1 28.780 205 127 4 40 231 42 240 9.11e-11 62.8
Msa1216990 AT1G79820.3 28.780 205 127 4 40 231 42 240 9.65e-11 62.8

Find 64 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATATTGAATCTAATAAA+AGG 0.189395 8_1:+79187963 Msa1216990:CDS
CTACGAAAAGAATAGTTAAA+AGG 0.199601 8_1:-79189873 None:intergenic
ACCAGCCATCTTGGAGATTC+AGG 0.209208 8_1:-79189412 None:intergenic
CTGCAGCTTATGATTGTTAT+TGG 0.236773 8_1:+79189184 Msa1216990:intron
GGATCCTTACTCACTTGATA+TGG 0.251939 8_1:+79188769 Msa1216990:intron
TCTAATAAAAGGGCTGAAAA+TGG 0.259766 8_1:+79187974 Msa1216990:CDS
CCTTGTCTTTCCTTGCTGAT+TGG 0.262460 8_1:+79189376 Msa1216990:CDS
CACCCACTCAAGCAGCTATA+AGG 0.283097 8_1:+79188299 Msa1216990:CDS
AGCACATTTGTTGCTGTTTG+CGG 0.352811 8_1:+79188019 Msa1216990:CDS
TCAACAGGATTCTGCATAAC+AGG 0.363541 8_1:+79188622 Msa1216990:CDS
AAAGGGAACTGCTGGGAGTT+TGG 0.366449 8_1:+79189662 Msa1216990:CDS
GTTGAGAGTGTAGATGTAAA+TGG 0.370198 8_1:+79187881 Msa1216990:CDS
GCAGTTCCCTTTACATGTAT+AGG 0.372514 8_1:-79189651 None:intergenic
GATAAATTGGCTAGGAGCTT+GGG 0.383530 8_1:+79189692 Msa1216990:CDS
CAGATTTCATTGGTCGAAAA+GGG 0.392522 8_1:+79188503 Msa1216990:CDS
GCTATTTCAGCTATATATAC+AGG 0.393733 8_1:-79188940 None:intergenic
TTTGGCTCTTTAGTAACAAT+TGG 0.412212 8_1:+79188445 Msa1216990:CDS
TAGATGTTTACCAGCCATCT+TGG 0.419823 8_1:-79189421 None:intergenic
ACCCACTCAAGCAGCTATAA+GGG 0.423715 8_1:+79188300 Msa1216990:CDS
CTTATGACCTGGAGTTCTCC+TGG 0.424660 8_1:+79189738 Msa1216990:CDS
ACAGATTTCATTGGTCGAAA+AGG 0.425706 8_1:+79188502 Msa1216990:CDS
TGATAAATTGGCTAGGAGCT+TGG 0.429952 8_1:+79189691 Msa1216990:CDS
GATCTTTCCTATACATGTAA+AGG 0.433411 8_1:+79189644 Msa1216990:intron
AGGGCTGAAAATGGATCCAT+TGG 0.444115 8_1:+79187983 Msa1216990:CDS
CCAGCCATCTTGGAGATTCA+GGG 0.444206 8_1:-79189411 None:intergenic
ATCCTTTCCATGTTGAATGA+AGG 0.446874 8_1:-79187924 None:intergenic
GTAACAATTGGTGCAATGCT+TGG 0.448522 8_1:+79188457 Msa1216990:CDS
GGCAGGATTACAGATTTCAT+TGG 0.449614 8_1:+79188493 Msa1216990:CDS
CTTTCAACTTTCTTATGACC+TGG 0.456290 8_1:+79189727 Msa1216990:CDS
TAATTCATATTGATGAATTG+AGG 0.465528 8_1:-79189948 None:intergenic
GCATCAGTCTCATTCTTACT+AGG 0.467631 8_1:+79189208 Msa1216990:CDS
ATACATGTAAAGGGAACTGC+TGG 0.469640 8_1:+79189654 Msa1216990:CDS
CTTCCCATATCAAGTGAGTA+AGG 0.470057 8_1:-79188773 None:intergenic
TGGACTTGCAACAACAAATC+AGG 0.478799 8_1:+79188981 Msa1216990:CDS
ATCTTTCCTATACATGTAAA+GGG 0.478854 8_1:+79189645 Msa1216990:CDS
AATTGGAGTTATTTCATATG+TGG 0.485138 8_1:+79188814 Msa1216990:CDS
TACGAAAAGAATAGTTAAAA+GGG 0.488431 8_1:-79189872 None:intergenic
TCCTTTCCATGTTGAATGAA+GGG 0.492314 8_1:-79187923 None:intergenic
TGATATTGAATCTAATAAAA+GGG 0.503214 8_1:+79187964 Msa1216990:CDS
CCCTGAATCTCCAAGATGGC+TGG 0.504031 8_1:+79189411 Msa1216990:CDS
CAGGCAATGAGATTGTCAAC+AGG 0.507534 8_1:+79188607 Msa1216990:intron
TGCCCTTATAGCTGCTTGAG+TGG 0.509964 8_1:-79188302 None:intergenic
GATCCTTACTCACTTGATAT+GGG 0.510417 8_1:+79188770 Msa1216990:CDS
GTGCTTACCAGGAGAACTCC+AGG 0.554100 8_1:-79189745 None:intergenic
ACCCTTCATTCAACATGGAA+AGG 0.557850 8_1:+79187922 Msa1216990:CDS
AAACAACCCTTCATTCAACA+TGG 0.567509 8_1:+79187917 Msa1216990:CDS
TGGAGAAAACTAGCTCTAGC+GGG 0.588031 8_1:+79189244 Msa1216990:CDS
TTGGAGCTATAACAAGTGGC+AGG 0.593137 8_1:+79188476 Msa1216990:CDS
GCCCTTATAGCTGCTTGAGT+GGG 0.596062 8_1:-79188301 None:intergenic
CCAATCAGCAAGGAAAGACA+AGG 0.603396 8_1:-79189376 None:intergenic
TGAAAATGGATCCATTGGAA+TGG 0.608384 8_1:+79187988 Msa1216990:CDS
TGTTACTAAAGAGCCAAACA+TGG 0.612922 8_1:-79188440 None:intergenic
TTGGAGAAAACTAGCTCTAG+CGG 0.615254 8_1:+79189243 Msa1216990:CDS
TTATCCCTGAATCTCCAAGA+TGG 0.617977 8_1:+79189407 Msa1216990:CDS
CAGGATTCTGCATAACAGGA+TGG 0.623365 8_1:+79188626 Msa1216990:CDS
CTATTTCAGCTATATATACA+GGG 0.623991 8_1:-79188939 None:intergenic
AGATTTCATTGGTCGAAAAG+GGG 0.627846 8_1:+79188504 Msa1216990:CDS
GCTGAGCAGAACCATTCCAA+TGG 0.635982 8_1:-79187999 None:intergenic
AATGACAATTGAGCAGCACA+AGG 0.639967 8_1:+79187856 None:intergenic
ATGCTTGGAGCTATAACAAG+TGG 0.641914 8_1:+79188472 Msa1216990:CDS
AAGTTAGTCCCAGAAACCAA+AGG 0.659062 8_1:+79189898 Msa1216990:CDS
AAAGCACAAACCAATCAGCA+AGG 0.672054 8_1:-79189386 None:intergenic
TCTTAATCTATCTATCTCTG+AGG 0.681834 8_1:+79188327 Msa1216990:CDS
TACATGTAAAGGGAACTGCT+GGG 0.697317 8_1:+79189655 Msa1216990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATTGAATCTAATAAA+AGG + chr8_1:79187963-79187982 Msa1216990:CDS 15.0%
!! TGATATTGAATCTAATAAAA+GGG + chr8_1:79187964-79187983 Msa1216990:CDS 15.0%
!!! TTTATTTTCCTTTCAAAATA+TGG + chr8_1:79188100-79188119 Msa1216990:intron 15.0%
!!! TCAATTTTTTTTCATTGATT+AGG + chr8_1:79188187-79188206 Msa1216990:intron 15.0%
!! ATTCATCCAATAAATAAAAA+AGG + chr8_1:79188227-79188246 Msa1216990:intron 15.0%
!! TTCATCCAATAAATAAAAAA+GGG + chr8_1:79188228-79188247 Msa1216990:intron 15.0%
!! TATAAAATTAAATGTCAATG+AGG - chr8_1:79188373-79188392 None:intergenic 15.0%
!!! TTTATACTATACTTTTTTGA+AGG + chr8_1:79188387-79188406 Msa1216990:intron 15.0%
!! ATGATATTGAATCTAATAAA+AGG + chr8_1:79187963-79187982 Msa1216990:CDS 15.0%
!! TGATATTGAATCTAATAAAA+GGG + chr8_1:79187964-79187983 Msa1216990:CDS 15.0%
!!! TTTATTTTCCTTTCAAAATA+TGG + chr8_1:79188100-79188119 Msa1216990:intron 15.0%
!!! TCAATTTTTTTTCATTGATT+AGG + chr8_1:79188187-79188206 Msa1216990:intron 15.0%
!! ATTCATCCAATAAATAAAAA+AGG + chr8_1:79188227-79188246 Msa1216990:intron 15.0%
!! TTCATCCAATAAATAAAAAA+GGG + chr8_1:79188228-79188247 Msa1216990:intron 15.0%
!! TATAAAATTAAATGTCAATG+AGG - chr8_1:79188373-79188392 None:intergenic 15.0%
!!! TTTATACTATACTTTTTTGA+AGG + chr8_1:79188387-79188406 Msa1216990:intron 15.0%
!! ACAACTAATAATAATGTCTT+TGG + chr8_1:79188410-79188429 Msa1216990:intron 20.0%
!!! TATATGCACTTTACAATTTT+AGG + chr8_1:79188553-79188572 Msa1216990:intron 20.0%
!!! TTTTATAAAATCGACTTATG+AGG - chr8_1:79189531-79189550 None:intergenic 20.0%
!! CTATATATAAAACGAATACA+AGG + chr8_1:79189563-79189582 Msa1216990:intron 20.0%
!! TTCATCTTAATTAGCTAAAT+TGG + chr8_1:79189793-79189812 Msa1216990:intron 20.0%
!!! ACATATATCTTCTATCTTTT+TGG + chr8_1:79189818-79189837 Msa1216990:intron 20.0%
!!! CATATATCTTCTATCTTTTT+GGG + chr8_1:79189819-79189838 Msa1216990:intron 20.0%
!! TACGAAAAGAATAGTTAAAA+GGG - chr8_1:79189875-79189894 None:intergenic 20.0%
!! ACAACTAATAATAATGTCTT+TGG + chr8_1:79188410-79188429 Msa1216990:intron 20.0%
!!! TATATGCACTTTACAATTTT+AGG + chr8_1:79188553-79188572 Msa1216990:intron 20.0%
!!! TTTTATAAAATCGACTTATG+AGG - chr8_1:79189531-79189550 None:intergenic 20.0%
!! CTATATATAAAACGAATACA+AGG + chr8_1:79189563-79189582 Msa1216990:intron 20.0%
!! TTCATCTTAATTAGCTAAAT+TGG + chr8_1:79189793-79189812 Msa1216990:intron 20.0%
!!! ACATATATCTTCTATCTTTT+TGG + chr8_1:79189818-79189837 Msa1216990:intron 20.0%
!!! CATATATCTTCTATCTTTTT+GGG + chr8_1:79189819-79189838 Msa1216990:intron 20.0%
!! TACGAAAAGAATAGTTAAAA+GGG - chr8_1:79189875-79189894 None:intergenic 20.0%
! ATGAAAAAAAATTGACACAG+AGG - chr8_1:79188182-79188201 None:intergenic 25.0%
!!! GCAAACCCTTTTTTATTTAT+TGG - chr8_1:79188236-79188255 None:intergenic 25.0%
!! TTAGCTGAAAGCTATTATTT+TGG + chr8_1:79188260-79188279 Msa1216990:intron 25.0%
! AAATTAAATGTCAATGAGGA+GGG - chr8_1:79188369-79188388 None:intergenic 25.0%
! AAAATTAAATGTCAATGAGG+AGG - chr8_1:79188370-79188389 None:intergenic 25.0%
!!! TAAGGCTTGTTAATAATGAA+TGG - chr8_1:79188580-79188599 None:intergenic 25.0%
!!! TGTGTTATTCTTTTTAATGC+AGG + chr8_1:79188748-79188767 Msa1216990:intron 25.0%
!! AATTGGAGTTATTTCATATG+TGG + chr8_1:79188814-79188833 Msa1216990:CDS 25.0%
!! CTATTAGAAAGTTTAAGATG+AGG + chr8_1:79188847-79188866 Msa1216990:intron 25.0%
! TACATAGCAAAAATTGTAAC+AGG + chr8_1:79188915-79188934 Msa1216990:intron 25.0%
! CTATTTCAGCTATATATACA+GGG - chr8_1:79188942-79188961 None:intergenic 25.0%
! GCATTAAGTGTATCTAATTA+TGG + chr8_1:79189303-79189322 Msa1216990:intron 25.0%
!!! GACTTTGTTTGAATTTTGAA+AGG + chr8_1:79189346-79189365 Msa1216990:intron 25.0%
! AACTGTATATTACAGCATAA+AGG + chr8_1:79189452-79189471 Msa1216990:intron 25.0%
! ATCTTTCCTATACATGTAAA+GGG + chr8_1:79189645-79189664 Msa1216990:CDS 25.0%
!!! GTTTGGTAGTTTTGATAAAT+TGG + chr8_1:79189679-79189698 Msa1216990:CDS 25.0%
!!! GGTACATTATTTTTATATGC+TGG + chr8_1:79189844-79189863 Msa1216990:intron 25.0%
! CTACGAAAAGAATAGTTAAA+AGG - chr8_1:79189876-79189895 None:intergenic 25.0%
! AAAAACATTGGAAGAAATTC+AGG + chr8_1:79189921-79189940 Msa1216990:CDS 25.0%
! ATGAAAAAAAATTGACACAG+AGG - chr8_1:79188182-79188201 None:intergenic 25.0%
!!! GCAAACCCTTTTTTATTTAT+TGG - chr8_1:79188236-79188255 None:intergenic 25.0%
!! TTAGCTGAAAGCTATTATTT+TGG + chr8_1:79188260-79188279 Msa1216990:intron 25.0%
! AAATTAAATGTCAATGAGGA+GGG - chr8_1:79188369-79188388 None:intergenic 25.0%
! AAAATTAAATGTCAATGAGG+AGG - chr8_1:79188370-79188389 None:intergenic 25.0%
!!! TAAGGCTTGTTAATAATGAA+TGG - chr8_1:79188580-79188599 None:intergenic 25.0%
!!! TGTGTTATTCTTTTTAATGC+AGG + chr8_1:79188748-79188767 Msa1216990:intron 25.0%
!! AATTGGAGTTATTTCATATG+TGG + chr8_1:79188814-79188833 Msa1216990:CDS 25.0%
!! CTATTAGAAAGTTTAAGATG+AGG + chr8_1:79188847-79188866 Msa1216990:intron 25.0%
! TACATAGCAAAAATTGTAAC+AGG + chr8_1:79188915-79188934 Msa1216990:intron 25.0%
! CTATTTCAGCTATATATACA+GGG - chr8_1:79188942-79188961 None:intergenic 25.0%
! GCATTAAGTGTATCTAATTA+TGG + chr8_1:79189303-79189322 Msa1216990:intron 25.0%
!!! GACTTTGTTTGAATTTTGAA+AGG + chr8_1:79189346-79189365 Msa1216990:intron 25.0%
! AACTGTATATTACAGCATAA+AGG + chr8_1:79189452-79189471 Msa1216990:intron 25.0%
! ATCTTTCCTATACATGTAAA+GGG + chr8_1:79189645-79189664 Msa1216990:CDS 25.0%
!!! GTTTGGTAGTTTTGATAAAT+TGG + chr8_1:79189679-79189698 Msa1216990:CDS 25.0%
!!! GGTACATTATTTTTATATGC+TGG + chr8_1:79189844-79189863 Msa1216990:intron 25.0%
! CTACGAAAAGAATAGTTAAA+AGG - chr8_1:79189876-79189895 None:intergenic 25.0%
! AAAAACATTGGAAGAAATTC+AGG + chr8_1:79189921-79189940 Msa1216990:CDS 25.0%
TCTAATAAAAGGGCTGAAAA+TGG + chr8_1:79187974-79187993 Msa1216990:CDS 30.0%
!! CTTATGCACCATATTTTGAA+AGG - chr8_1:79188111-79188130 None:intergenic 30.0%
!!! GGATGAATGTGTTTTAGTTT+TGG - chr8_1:79188215-79188234 None:intergenic 30.0%
TCTTAATCTATCTATCTCTG+AGG + chr8_1:79188327-79188346 Msa1216990:CDS 30.0%
AATTAAATGTCAATGAGGAG+GGG - chr8_1:79188368-79188387 None:intergenic 30.0%
!! TTTGGCTCTTTAGTAACAAT+TGG + chr8_1:79188445-79188464 Msa1216990:CDS 30.0%
TAACAAGCCTTAAAATTCAC+AGG + chr8_1:79188588-79188607 Msa1216990:intron 30.0%
!!! GTTAGCTGTCTTTTTTTCAA+AGG + chr8_1:79188648-79188667 Msa1216990:CDS 30.0%
! TGCAACATTCTTTTTGTCTT+AGG - chr8_1:79188698-79188717 None:intergenic 30.0%
! TTTTTCACAGGATATGGAAT+TGG + chr8_1:79188797-79188816 Msa1216990:CDS 30.0%
! GCTATTTCAGCTATATATAC+AGG - chr8_1:79188943-79188962 None:intergenic 30.0%
GTACGACATAGAAGTAATTA+CGG + chr8_1:79189091-79189110 Msa1216990:intron 30.0%
CTGCAGAACAATAATAATCA+AGG - chr8_1:79189170-79189189 None:intergenic 30.0%
!!! TACTAGGAAGTGTTTTAAGT+TGG + chr8_1:79189224-79189243 Msa1216990:CDS 30.0%
! TAAAATCGACTTATGAGGTA+CGG - chr8_1:79189526-79189545 None:intergenic 30.0%
GATCTTTCCTATACATGTAA+AGG + chr8_1:79189644-79189663 Msa1216990:intron 30.0%
!!! GTAGTTTTGATAAATTGGCT+AGG + chr8_1:79189684-79189703 Msa1216990:CDS 30.0%
AGATGAAGAACTTAAGTTTG+TGG - chr8_1:79189780-79189799 None:intergenic 30.0%
!! ATGTTTTTCCTTTGGTTTCT+GGG - chr8_1:79189909-79189928 None:intergenic 30.0%
!! AATGTTTTTCCTTTGGTTTC+TGG - chr8_1:79189910-79189929 None:intergenic 30.0%
AGAAACCAAAGGAAAAACAT+TGG + chr8_1:79189909-79189928 Msa1216990:CDS 30.0%
! TTCTTCCAATGTTTTTCCTT+TGG - chr8_1:79189917-79189936 None:intergenic 30.0%
TCTAATAAAAGGGCTGAAAA+TGG + chr8_1:79187974-79187993 Msa1216990:CDS 30.0%
!! CTTATGCACCATATTTTGAA+AGG - chr8_1:79188111-79188130 None:intergenic 30.0%
!!! GGATGAATGTGTTTTAGTTT+TGG - chr8_1:79188215-79188234 None:intergenic 30.0%
TCTTAATCTATCTATCTCTG+AGG + chr8_1:79188327-79188346 Msa1216990:CDS 30.0%
AATTAAATGTCAATGAGGAG+GGG - chr8_1:79188368-79188387 None:intergenic 30.0%
!! TTTGGCTCTTTAGTAACAAT+TGG + chr8_1:79188445-79188464 Msa1216990:CDS 30.0%
TAACAAGCCTTAAAATTCAC+AGG + chr8_1:79188588-79188607 Msa1216990:intron 30.0%
!!! GTTAGCTGTCTTTTTTTCAA+AGG + chr8_1:79188648-79188667 Msa1216990:CDS 30.0%
! TGCAACATTCTTTTTGTCTT+AGG - chr8_1:79188698-79188717 None:intergenic 30.0%
! TTTTTCACAGGATATGGAAT+TGG + chr8_1:79188797-79188816 Msa1216990:CDS 30.0%
! GCTATTTCAGCTATATATAC+AGG - chr8_1:79188943-79188962 None:intergenic 30.0%
GTACGACATAGAAGTAATTA+CGG + chr8_1:79189091-79189110 Msa1216990:intron 30.0%
CTGCAGAACAATAATAATCA+AGG - chr8_1:79189170-79189189 None:intergenic 30.0%
!!! TACTAGGAAGTGTTTTAAGT+TGG + chr8_1:79189224-79189243 Msa1216990:CDS 30.0%
! TAAAATCGACTTATGAGGTA+CGG - chr8_1:79189526-79189545 None:intergenic 30.0%
GATCTTTCCTATACATGTAA+AGG + chr8_1:79189644-79189663 Msa1216990:intron 30.0%
!!! GTAGTTTTGATAAATTGGCT+AGG + chr8_1:79189684-79189703 Msa1216990:CDS 30.0%
AGATGAAGAACTTAAGTTTG+TGG - chr8_1:79189780-79189799 None:intergenic 30.0%
!! ATGTTTTTCCTTTGGTTTCT+GGG - chr8_1:79189909-79189928 None:intergenic 30.0%
!! AATGTTTTTCCTTTGGTTTC+TGG - chr8_1:79189910-79189929 None:intergenic 30.0%
AGAAACCAAAGGAAAAACAT+TGG + chr8_1:79189909-79189928 Msa1216990:CDS 30.0%
! TTCTTCCAATGTTTTTCCTT+TGG - chr8_1:79189917-79189936 None:intergenic 30.0%
! GTTGAGAGTGTAGATGTAAA+TGG + chr8_1:79187881-79187900 Msa1216990:CDS 35.0%
AAACAACCCTTCATTCAACA+TGG + chr8_1:79187917-79187936 Msa1216990:CDS 35.0%
TCCTTTCCATGTTGAATGAA+GGG - chr8_1:79187926-79187945 None:intergenic 35.0%
ATCCTTTCCATGTTGAATGA+AGG - chr8_1:79187927-79187946 None:intergenic 35.0%
TGAAAATGGATCCATTGGAA+TGG + chr8_1:79187988-79188007 Msa1216990:CDS 35.0%
!! GTTTGCGGTTCTTTTTCATT+TGG + chr8_1:79188034-79188053 Msa1216990:CDS 35.0%
!!! CTGAAAGCTATTATTTTGGC+AGG + chr8_1:79188264-79188283 Msa1216990:intron 35.0%
!!! AAAGCTATTATTTTGGCAGG+TGG + chr8_1:79188267-79188286 Msa1216990:intron 35.0%
!!! AAGCTATTATTTTGGCAGGT+GGG + chr8_1:79188268-79188287 Msa1216990:intron 35.0%
TGTTACTAAAGAGCCAAACA+TGG - chr8_1:79188443-79188462 None:intergenic 35.0%
ACAGATTTCATTGGTCGAAA+AGG + chr8_1:79188502-79188521 Msa1216990:CDS 35.0%
CAGATTTCATTGGTCGAAAA+GGG + chr8_1:79188503-79188522 Msa1216990:CDS 35.0%
AGATTTCATTGGTCGAAAAG+GGG + chr8_1:79188504-79188523 Msa1216990:CDS 35.0%
! CTCATTGCCTGTGAATTTTA+AGG - chr8_1:79188598-79188617 None:intergenic 35.0%
GATCCTTACTCACTTGATAT+GGG + chr8_1:79188770-79188789 Msa1216990:CDS 35.0%
! GATATGGGAAGATTTTTCAC+AGG + chr8_1:79188785-79188804 Msa1216990:CDS 35.0%
! GGAAGATTTTTCACAGGATA+TGG + chr8_1:79188791-79188810 Msa1216990:CDS 35.0%
ATAGCACCAAAAAATCTTCG+AGG + chr8_1:79188958-79188977 Msa1216990:CDS 35.0%
TTGCAACAACAAATCAGGTA+GGG + chr8_1:79188986-79189005 Msa1216990:intron 35.0%
CTGCAGCTTATGATTGTTAT+TGG + chr8_1:79189184-79189203 Msa1216990:intron 35.0%
! AAAATCGACTTATGAGGTAC+GGG - chr8_1:79189525-79189544 None:intergenic 35.0%
CTTTCAACTTTCTTATGACC+TGG + chr8_1:79189727-79189746 Msa1216990:CDS 35.0%
!! TATCTTCTATCTTTTTGGGC+AGG + chr8_1:79189823-79189842 Msa1216990:intron 35.0%
! GTTGAGAGTGTAGATGTAAA+TGG + chr8_1:79187881-79187900 Msa1216990:CDS 35.0%
AAACAACCCTTCATTCAACA+TGG + chr8_1:79187917-79187936 Msa1216990:CDS 35.0%
TCCTTTCCATGTTGAATGAA+GGG - chr8_1:79187926-79187945 None:intergenic 35.0%
ATCCTTTCCATGTTGAATGA+AGG - chr8_1:79187927-79187946 None:intergenic 35.0%
TGAAAATGGATCCATTGGAA+TGG + chr8_1:79187988-79188007 Msa1216990:CDS 35.0%
!! GTTTGCGGTTCTTTTTCATT+TGG + chr8_1:79188034-79188053 Msa1216990:CDS 35.0%
!!! CTGAAAGCTATTATTTTGGC+AGG + chr8_1:79188264-79188283 Msa1216990:intron 35.0%
!!! AAAGCTATTATTTTGGCAGG+TGG + chr8_1:79188267-79188286 Msa1216990:intron 35.0%
!!! AAGCTATTATTTTGGCAGGT+GGG + chr8_1:79188268-79188287 Msa1216990:intron 35.0%
TGTTACTAAAGAGCCAAACA+TGG - chr8_1:79188443-79188462 None:intergenic 35.0%
ACAGATTTCATTGGTCGAAA+AGG + chr8_1:79188502-79188521 Msa1216990:CDS 35.0%
CAGATTTCATTGGTCGAAAA+GGG + chr8_1:79188503-79188522 Msa1216990:CDS 35.0%
AGATTTCATTGGTCGAAAAG+GGG + chr8_1:79188504-79188523 Msa1216990:CDS 35.0%
! CTCATTGCCTGTGAATTTTA+AGG - chr8_1:79188598-79188617 None:intergenic 35.0%
GATCCTTACTCACTTGATAT+GGG + chr8_1:79188770-79188789 Msa1216990:CDS 35.0%
! GATATGGGAAGATTTTTCAC+AGG + chr8_1:79188785-79188804 Msa1216990:CDS 35.0%
! GGAAGATTTTTCACAGGATA+TGG + chr8_1:79188791-79188810 Msa1216990:CDS 35.0%
ATAGCACCAAAAAATCTTCG+AGG + chr8_1:79188958-79188977 Msa1216990:CDS 35.0%
TTGCAACAACAAATCAGGTA+GGG + chr8_1:79188986-79189005 Msa1216990:intron 35.0%
CTGCAGCTTATGATTGTTAT+TGG + chr8_1:79189184-79189203 Msa1216990:intron 35.0%
! AAAATCGACTTATGAGGTAC+GGG - chr8_1:79189525-79189544 None:intergenic 35.0%
CTTTCAACTTTCTTATGACC+TGG + chr8_1:79189727-79189746 Msa1216990:CDS 35.0%
!! TATCTTCTATCTTTTTGGGC+AGG + chr8_1:79189823-79189842 Msa1216990:intron 35.0%
ACCCTTCATTCAACATGGAA+AGG + chr8_1:79187922-79187941 Msa1216990:CDS 40.0%
!! AGCACATTTGTTGCTGTTTG+CGG + chr8_1:79188019-79188038 Msa1216990:CDS 40.0%
! CTTTGGCAGTTTTCCATGTT+TGG + chr8_1:79188427-79188446 Msa1216990:intron 40.0%
GTAACAATTGGTGCAATGCT+TGG + chr8_1:79188457-79188476 Msa1216990:CDS 40.0%
ATGCTTGGAGCTATAACAAG+TGG + chr8_1:79188472-79188491 Msa1216990:CDS 40.0%
GGCAGGATTACAGATTTCAT+TGG + chr8_1:79188493-79188512 Msa1216990:CDS 40.0%
TCAACAGGATTCTGCATAAC+AGG + chr8_1:79188622-79188641 Msa1216990:CDS 40.0%
GGATCCTTACTCACTTGATA+TGG + chr8_1:79188769-79188788 Msa1216990:intron 40.0%
CTTCCCATATCAAGTGAGTA+AGG - chr8_1:79188776-79188795 None:intergenic 40.0%
!!! AGTCCACCTCGAAGATTTTT+TGG - chr8_1:79188967-79188986 None:intergenic 40.0%
TGGACTTGCAACAACAAATC+AGG + chr8_1:79188981-79189000 Msa1216990:CDS 40.0%
CTTGCAACAACAAATCAGGT+AGG + chr8_1:79188985-79189004 Msa1216990:intron 40.0%
GCATCAGTCTCATTCTTACT+AGG + chr8_1:79189208-79189227 Msa1216990:CDS 40.0%
!! TTGGAGAAAACTAGCTCTAG+CGG + chr8_1:79189243-79189262 Msa1216990:CDS 40.0%
! GGAGTGAAAGTTCTAACTGT+TGG + chr8_1:79189324-79189343 Msa1216990:intron 40.0%
AAAGCACAAACCAATCAGCA+AGG - chr8_1:79189389-79189408 None:intergenic 40.0%
TTATCCCTGAATCTCCAAGA+TGG + chr8_1:79189407-79189426 Msa1216990:CDS 40.0%
TAGATGTTTACCAGCCATCT+TGG - chr8_1:79189424-79189443 None:intergenic 40.0%
GCAGTTCCCTTTACATGTAT+AGG - chr8_1:79189654-79189673 None:intergenic 40.0%
ATACATGTAAAGGGAACTGC+TGG + chr8_1:79189654-79189673 Msa1216990:CDS 40.0%
TACATGTAAAGGGAACTGCT+GGG + chr8_1:79189655-79189674 Msa1216990:CDS 40.0%
TGATAAATTGGCTAGGAGCT+TGG + chr8_1:79189691-79189710 Msa1216990:CDS 40.0%
GATAAATTGGCTAGGAGCTT+GGG + chr8_1:79189692-79189711 Msa1216990:CDS 40.0%
AAGTTAGTCCCAGAAACCAA+AGG + chr8_1:79189898-79189917 Msa1216990:CDS 40.0%
ACCCTTCATTCAACATGGAA+AGG + chr8_1:79187922-79187941 Msa1216990:CDS 40.0%
!! AGCACATTTGTTGCTGTTTG+CGG + chr8_1:79188019-79188038 Msa1216990:CDS 40.0%
! CTTTGGCAGTTTTCCATGTT+TGG + chr8_1:79188427-79188446 Msa1216990:intron 40.0%
GTAACAATTGGTGCAATGCT+TGG + chr8_1:79188457-79188476 Msa1216990:CDS 40.0%
ATGCTTGGAGCTATAACAAG+TGG + chr8_1:79188472-79188491 Msa1216990:CDS 40.0%
GGCAGGATTACAGATTTCAT+TGG + chr8_1:79188493-79188512 Msa1216990:CDS 40.0%
TCAACAGGATTCTGCATAAC+AGG + chr8_1:79188622-79188641 Msa1216990:CDS 40.0%
GGATCCTTACTCACTTGATA+TGG + chr8_1:79188769-79188788 Msa1216990:intron 40.0%
CTTCCCATATCAAGTGAGTA+AGG - chr8_1:79188776-79188795 None:intergenic 40.0%
!!! AGTCCACCTCGAAGATTTTT+TGG - chr8_1:79188967-79188986 None:intergenic 40.0%
TGGACTTGCAACAACAAATC+AGG + chr8_1:79188981-79189000 Msa1216990:CDS 40.0%
CTTGCAACAACAAATCAGGT+AGG + chr8_1:79188985-79189004 Msa1216990:intron 40.0%
GCATCAGTCTCATTCTTACT+AGG + chr8_1:79189208-79189227 Msa1216990:CDS 40.0%
!! TTGGAGAAAACTAGCTCTAG+CGG + chr8_1:79189243-79189262 Msa1216990:CDS 40.0%
! GGAGTGAAAGTTCTAACTGT+TGG + chr8_1:79189324-79189343 Msa1216990:intron 40.0%
AAAGCACAAACCAATCAGCA+AGG - chr8_1:79189389-79189408 None:intergenic 40.0%
TTATCCCTGAATCTCCAAGA+TGG + chr8_1:79189407-79189426 Msa1216990:CDS 40.0%
TAGATGTTTACCAGCCATCT+TGG - chr8_1:79189424-79189443 None:intergenic 40.0%
GCAGTTCCCTTTACATGTAT+AGG - chr8_1:79189654-79189673 None:intergenic 40.0%
ATACATGTAAAGGGAACTGC+TGG + chr8_1:79189654-79189673 Msa1216990:CDS 40.0%
TACATGTAAAGGGAACTGCT+GGG + chr8_1:79189655-79189674 Msa1216990:CDS 40.0%
TGATAAATTGGCTAGGAGCT+TGG + chr8_1:79189691-79189710 Msa1216990:CDS 40.0%
GATAAATTGGCTAGGAGCTT+GGG + chr8_1:79189692-79189711 Msa1216990:CDS 40.0%
AAGTTAGTCCCAGAAACCAA+AGG + chr8_1:79189898-79189917 Msa1216990:CDS 40.0%
AGGGCTGAAAATGGATCCAT+TGG + chr8_1:79187983-79188002 Msa1216990:CDS 45.0%
ACCCACTCAAGCAGCTATAA+GGG + chr8_1:79188300-79188319 Msa1216990:CDS 45.0%
TTGGAGCTATAACAAGTGGC+AGG + chr8_1:79188476-79188495 Msa1216990:CDS 45.0%
CAGGCAATGAGATTGTCAAC+AGG + chr8_1:79188607-79188626 Msa1216990:intron 45.0%
CAGGATTCTGCATAACAGGA+TGG + chr8_1:79188626-79188645 Msa1216990:CDS 45.0%
CATCGAGACGAAGCAACATA+AGG - chr8_1:79188873-79188892 None:intergenic 45.0%
GCACCAAAAAATCTTCGAGG+TGG + chr8_1:79188961-79188980 Msa1216990:CDS 45.0%
!! TGGAGAAAACTAGCTCTAGC+GGG + chr8_1:79189244-79189263 Msa1216990:CDS 45.0%
CCAATCAGCAAGGAAAGACA+AGG - chr8_1:79189379-79189398 None:intergenic 45.0%
CCTTGTCTTTCCTTGCTGAT+TGG + chr8_1:79189376-79189395 Msa1216990:CDS 45.0%
AGGGCTGAAAATGGATCCAT+TGG + chr8_1:79187983-79188002 Msa1216990:CDS 45.0%
ACCCACTCAAGCAGCTATAA+GGG + chr8_1:79188300-79188319 Msa1216990:CDS 45.0%
TTGGAGCTATAACAAGTGGC+AGG + chr8_1:79188476-79188495 Msa1216990:CDS 45.0%
CAGGCAATGAGATTGTCAAC+AGG + chr8_1:79188607-79188626 Msa1216990:intron 45.0%
CAGGATTCTGCATAACAGGA+TGG + chr8_1:79188626-79188645 Msa1216990:CDS 45.0%
CATCGAGACGAAGCAACATA+AGG - chr8_1:79188873-79188892 None:intergenic 45.0%
GCACCAAAAAATCTTCGAGG+TGG + chr8_1:79188961-79188980 Msa1216990:CDS 45.0%
!! TGGAGAAAACTAGCTCTAGC+GGG + chr8_1:79189244-79189263 Msa1216990:CDS 45.0%
CCAATCAGCAAGGAAAGACA+AGG - chr8_1:79189379-79189398 None:intergenic 45.0%
CCTTGTCTTTCCTTGCTGAT+TGG + chr8_1:79189376-79189395 Msa1216990:CDS 45.0%
GCTGAGCAGAACCATTCCAA+TGG - chr8_1:79188002-79188021 None:intergenic 50.0%
CACCCACTCAAGCAGCTATA+AGG + chr8_1:79188299-79188318 Msa1216990:CDS 50.0%
GCCCTTATAGCTGCTTGAGT+GGG - chr8_1:79188304-79188323 None:intergenic 50.0%
TGCCCTTATAGCTGCTTGAG+TGG - chr8_1:79188305-79188324 None:intergenic 50.0%
CCAGCCATCTTGGAGATTCA+GGG - chr8_1:79189414-79189433 None:intergenic 50.0%
ACCAGCCATCTTGGAGATTC+AGG - chr8_1:79189415-79189434 None:intergenic 50.0%
AAAGGGAACTGCTGGGAGTT+TGG + chr8_1:79189662-79189681 Msa1216990:CDS 50.0%
CTTATGACCTGGAGTTCTCC+TGG + chr8_1:79189738-79189757 Msa1216990:CDS 50.0%
GGCAGTGTATTGTGCTTACC+AGG - chr8_1:79189759-79189778 None:intergenic 50.0%
GCTGAGCAGAACCATTCCAA+TGG - chr8_1:79188002-79188021 None:intergenic 50.0%
CACCCACTCAAGCAGCTATA+AGG + chr8_1:79188299-79188318 Msa1216990:CDS 50.0%
GCCCTTATAGCTGCTTGAGT+GGG - chr8_1:79188304-79188323 None:intergenic 50.0%
TGCCCTTATAGCTGCTTGAG+TGG - chr8_1:79188305-79188324 None:intergenic 50.0%
CCAGCCATCTTGGAGATTCA+GGG - chr8_1:79189414-79189433 None:intergenic 50.0%
ACCAGCCATCTTGGAGATTC+AGG - chr8_1:79189415-79189434 None:intergenic 50.0%
AAAGGGAACTGCTGGGAGTT+TGG + chr8_1:79189662-79189681 Msa1216990:CDS 50.0%
CTTATGACCTGGAGTTCTCC+TGG + chr8_1:79189738-79189757 Msa1216990:CDS 50.0%
GGCAGTGTATTGTGCTTACC+AGG - chr8_1:79189759-79189778 None:intergenic 50.0%
CCCTGAATCTCCAAGATGGC+TGG + chr8_1:79189411-79189430 Msa1216990:CDS 55.0%
GTGCTTACCAGGAGAACTCC+AGG - chr8_1:79189748-79189767 None:intergenic 55.0%
CCCTGAATCTCCAAGATGGC+TGG + chr8_1:79189411-79189430 Msa1216990:CDS 55.0%
GTGCTTACCAGGAGAACTCC+AGG - chr8_1:79189748-79189767 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 79187857 79189966 79187857 ID=Msa1216990;Name=Msa1216990
chr8_1 mRNA 79187857 79189966 79187857 ID=Msa1216990-mRNA-1;Parent=Msa1216990;Name=Msa1216990-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|1|1|10|0|309
chr8_1 exon 79187857 79188063 79187857 ID=Msa1216990-mRNA-1:exon:27494;Parent=Msa1216990-mRNA-1
chr8_1 exon 79188286 79188348 79188286 ID=Msa1216990-mRNA-1:exon:27495;Parent=Msa1216990-mRNA-1
chr8_1 exon 79188436 79188525 79188436 ID=Msa1216990-mRNA-1:exon:27496;Parent=Msa1216990-mRNA-1
chr8_1 exon 79188610 79188669 79188610 ID=Msa1216990-mRNA-1:exon:27497;Parent=Msa1216990-mRNA-1
chr8_1 exon 79188770 79188835 79188770 ID=Msa1216990-mRNA-1:exon:27498;Parent=Msa1216990-mRNA-1
chr8_1 exon 79188937 79189002 79188937 ID=Msa1216990-mRNA-1:exon:27499;Parent=Msa1216990-mRNA-1
chr8_1 exon 79189190 79189265 79189190 ID=Msa1216990-mRNA-1:exon:27500;Parent=Msa1216990-mRNA-1
chr8_1 exon 79189368 79189432 79189368 ID=Msa1216990-mRNA-1:exon:27501;Parent=Msa1216990-mRNA-1
chr8_1 exon 79189645 79189759 79189645 ID=Msa1216990-mRNA-1:exon:27502;Parent=Msa1216990-mRNA-1
chr8_1 exon 79189845 79189966 79189845 ID=Msa1216990-mRNA-1:exon:27503;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79187857 79188063 79187857 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79188286 79188348 79188286 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79188436 79188525 79188436 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79188610 79188669 79188610 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79188770 79188835 79188770 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79188937 79189002 79188937 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79189190 79189265 79189190 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79189368 79189432 79189368 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79189645 79189759 79189645 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
chr8_1 CDS 79189845 79189966 79189845 ID=Msa1216990-mRNA-1:cds;Parent=Msa1216990-mRNA-1
Gene Sequence

>Msa1216990

ATGACAATTGAGCAGCACAAGGATGTTGAGAGTGTAGATGTAAATGGACTTCGAGATTTGAAACAACCCTTCATTCAACATGGAAAGGATGCTACTGTTGACTATCATGATATTGAATCTAATAAAAGGGCTGAAAATGGATCCATTGGAATGGTTCTGCTCAGCACATTTGTTGCTGTTTGCGGTTCTTTTTCATTTGGAACTTGTGTGGGCTATTCATCACCCACTCAAGCAGCTATAAGGGCAGATCTTAATCTATCTATCTCTGAGTTTTCCATGTTTGGCTCTTTAGTAACAATTGGTGCAATGCTTGGAGCTATAACAAGTGGCAGGATTACAGATTTCATTGGTCGAAAAGGGGCAATGAGATTGTCAACAGGATTCTGCATAACAGGATGGTTAGCTGTCTTTTTTTCAAAGGATCCTTACTCACTTGATATGGGAAGATTTTTCACAGGATATGGAATTGGAGTTATTTCATATGTGGTCCCTGTATATATAGCTGAAATAGCACCAAAAAATCTTCGAGGTGGACTTGCAACAACAAATCAGCTTATGATTGTTATTGGAGCATCAGTCTCATTCTTACTAGGAAGTGTTTTAAGTTGGAGAAAACTAGCTCTAGCGGGTCTTCTTCCTTGTCTTTCCTTGCTGATTGGTTTGTGCTTTATCCCTGAATCTCCAAGATGGCTGATCTTTCCTATACATGTAAAGGGAACTGCTGGGAGTTTGGTAGTTTTGATAAATTGGCTAGGAGCTTGGGTTGTTTCATATACTTTCAACTTTCTTATGACCTGGAGTTCTCCTGGTACATTATTTTTATATGCTGGATGTTCCCTTTTAACTATTCTTTTCGTAGCAAAGTTAGTCCCAGAAACCAAAGGAAAAACATTGGAAGAAATTCAGGCATGCCTCAATTCATCAATATGA
Protein sequence

>Msa1216990

MTIEQHKDVESVDVNGLRDLKQPFIQHGKDATVDYHDIESNKRAENGSIGMVLLSTFVAVCGSFSFGTCVGYSSPTQAAIRADLNLSISEFSMFGSLVTIGAMLGAITSGRITDFIGRKGAMRLSTGFCITGWLAVFFSKDPYSLDMGRFFTGYGIGVISYVVPVYIAEIAPKNLRGGLATTNQLMIVIGASVSFLLGSVLSWRKLALAGLLPCLSLLIGLCFIPESPRWLIFPIHVKGTAGSLVVLINWLGAWVVSYTFNFLMTWSSPGTLFLYAGCSLLTILFVAKLVPETKGKTLEEIQACLNSSI*