AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1262650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262650 MtrunA17_Chr4g0066581 88.776 490 13 2 1 448 1 490 0.0 860
Msa1262650 MtrunA17_Chr2g0286721 73.770 488 83 3 1 446 1 485 0.0 730
Msa1262650 MtrunA17_Chr7g0259221 51.639 488 183 6 1 446 1 477 6.16e-167 478
Msa1262650 MtrunA17_Chr7g0259471 49.588 486 192 6 3 446 1 475 2.39e-158 456
Msa1262650 MtrunA17_Chr7g0273281 51.606 436 168 3 54 447 64 498 1.14e-151 440
Msa1262650 MtrunA17_Chr8g0373181 40.333 481 229 4 18 445 11 486 8.03e-117 350
Msa1262650 MtrunA17_Chr1g0155221 41.139 474 229 3 18 441 12 485 2.69e-114 344
Msa1262650 MtrunA17_Chr8g0373191 37.288 472 227 4 19 444 9 457 2.97e-97 299
Msa1262650 MtrunA17_Chr7g0273261 52.000 225 89 2 239 445 15 238 2.58e-73 231
Msa1262650 MtrunA17_Chr5g0404191 40.217 276 139 2 13 262 7 282 1.07e-57 192
Msa1262650 MtrunA17_Chr7g0273271 44.878 205 89 2 29 209 2 206 2.41e-51 172
Msa1262650 MtrunA17_Chr3g0144361 28.542 480 264 12 36 441 14 488 1.28e-43 160
Msa1262650 MtrunA17_Chr4g0021771 27.859 481 292 9 16 441 19 499 1.19e-41 155
Msa1262650 MtrunA17_Chr4g0034681 27.902 491 269 12 30 444 10 491 3.65e-41 153
Msa1262650 MtrunA17_Chr7g0250881 28.692 474 282 11 22 445 36 503 4.60e-40 150
Msa1262650 MtrunA17_Chr1g0213631 31.525 387 203 11 112 441 48 429 1.26e-39 148
Msa1262650 MtrunA17_Chr6g0457781 28.603 451 271 9 45 447 98 545 3.26e-39 148
Msa1262650 MtrunA17_Chr1g0213611 28.814 472 264 11 35 441 61 525 4.25e-39 148
Msa1262650 MtrunA17_Chr4g0039651 25.896 502 292 13 19 444 4 501 1.12e-38 146
Msa1262650 MtrunA17_Chr4g0004821 28.636 440 262 9 53 444 37 472 1.40e-36 140
Msa1262650 MtrunA17_Chr7g0214451 29.381 388 213 10 110 441 94 476 2.12e-36 140
Msa1262650 MtrunA17_Chr4g0036021 26.856 458 265 10 58 446 33 489 5.66e-36 139
Msa1262650 MtrunA17_Chr6g0486021 27.061 473 284 11 29 444 18 486 7.61e-36 138
Msa1262650 MtrunA17_Chr4g0032021 28.833 437 247 12 67 442 119 552 1.98e-35 138
Msa1262650 MtrunA17_Chr2g0282031 27.511 458 257 12 57 446 52 502 3.76e-35 137
Msa1262650 MtrunA17_Chr8g0373531 28.132 455 238 15 67 441 34 479 9.43e-35 135
Msa1262650 MtrunA17_Chr5g0432581 25.519 482 273 16 37 441 7 479 2.52e-33 131
Msa1262650 MtrunA17_Chr8g0390521 28.270 474 264 15 38 441 1 468 1.95e-31 125
Msa1262650 MtrunA17_Chr5g0404181 50.476 105 52 0 337 441 24 128 3.41e-31 116
Msa1262650 MtrunA17_Chr6g0485661 26.371 474 278 12 26 436 37 502 1.02e-29 121
Msa1262650 MtrunA17_Chr3g0115741 24.257 404 249 7 92 440 85 486 1.68e-28 117
Msa1262650 MtrunA17_Chr3g0115721 23.762 404 251 7 92 440 82 483 3.32e-28 116
Msa1262650 MtrunA17_Chr3g0121674 28.920 287 168 9 184 440 2 282 6.70e-28 112
Msa1262650 MtrunA17_Chr7g0221631 65.217 69 24 0 341 409 47 115 1.45e-27 106
Msa1262650 MtrunA17_Chr3g0119401 25.951 447 262 10 58 446 99 534 2.17e-27 114
Msa1262650 MtrunA17_Chr3g0078971 25.000 480 279 13 38 440 8 483 7.87e-27 112
Msa1262650 MtrunA17_Chr3g0115781 25.952 289 184 5 181 441 200 486 5.54e-26 110
Msa1262650 MtrunA17_Chr3g0115751 24.010 404 250 7 92 440 87 488 1.27e-25 109
Msa1262650 MtrunA17_Chr3g0085971 24.528 424 258 8 76 441 66 485 2.23e-25 108
Msa1262650 MtrunA17_Chr3g0115731 24.513 359 240 6 110 440 107 462 2.80e-24 105
Msa1262650 MtrunA17_Chr3g0115711 24.010 404 249 10 92 440 82 482 5.37e-24 104
Msa1262650 MtrunA17_Chr5g0403831 23.111 450 264 12 71 441 46 492 8.15e-24 103
Msa1262650 MtrunA17_Chr5g0420841 25.553 407 243 11 92 441 82 485 2.39e-23 102
Msa1262650 MtrunA17_Chr5g0394341 24.450 409 241 11 92 440 83 483 2.79e-23 102
Msa1262650 MtrunA17_Chr4g0065324 27.365 296 177 8 181 446 205 492 1.18e-22 100
Msa1262650 MtrunA17_Chr1g0205691 29.167 288 171 7 181 440 201 483 3.15e-22 99.4
Msa1262650 MtrunA17_Chr2g0303731 29.283 321 182 9 52 331 26 342 2.14e-21 97.1
Msa1262650 MtrunA17_Chr2g0303731 34.951 103 66 1 344 445 452 554 3.33e-12 68.6
Msa1262650 MtrunA17_Chr3g0078991 25.784 287 185 6 181 441 201 485 2.53e-21 96.3
Msa1262650 MtrunA17_Chr6g0486681 24.814 403 246 9 92 440 86 485 4.08e-21 95.9
Msa1262650 MtrunA17_Chr6g0486671 24.814 403 246 9 92 440 86 485 4.08e-21 95.9
Msa1262650 MtrunA17_Chr4g0065311 26.132 287 180 7 181 440 197 478 6.33e-21 95.1
Msa1262650 MtrunA17_Chr8g0390141 30.556 288 167 10 181 440 203 485 6.75e-21 95.1
Msa1262650 MtrunA17_Chr3g0078791 22.829 403 237 8 92 440 28 410 7.90e-21 94.4
Msa1262650 MtrunA17_Chr1g0205681 22.906 406 257 7 89 440 81 484 9.96e-21 94.7
Msa1262650 MtrunA17_Chr5g0417611 24.476 429 252 12 77 440 65 486 2.15e-20 93.6
Msa1262650 MtrunA17_Chr8g0390261 25.791 411 232 11 92 440 86 485 2.33e-20 93.6
Msa1262650 MtrunA17_Chr1g0205671 23.515 404 251 9 92 440 83 483 5.68e-20 92.4
Msa1262650 MtrunA17_Chr3g0128081 23.587 407 249 10 92 440 83 485 6.48e-20 92.0
Msa1262650 MtrunA17_Chr5g0419321 31.963 219 117 6 253 440 514 731 2.02e-19 91.3
Msa1262650 MtrunA17_Chr4g0048411 26.531 392 228 9 112 446 103 491 2.04e-19 90.9
Msa1262650 MtrunA17_Chr3g0128171 21.975 405 258 6 92 440 36 438 2.10e-19 90.5
Msa1262650 MtrunA17_Chr4g0065351 26.042 288 179 8 181 440 40 321 9.89e-19 87.4
Msa1262650 MtrunA17_Chr7g0259451 68.000 50 16 0 360 409 1 50 1.18e-18 79.3
Msa1262650 MtrunA17_Chr5g0445601 27.586 290 172 8 181 440 203 484 2.02e-18 87.4
Msa1262650 MtrunA17_Chr4g0048051 25.130 386 229 8 112 440 103 485 2.18e-18 87.4
Msa1262650 MtrunA17_Chr7g0257631 28.028 289 172 7 181 440 237 518 2.29e-18 87.4
Msa1262650 MtrunA17_Chr1g0164851 23.140 484 286 10 42 446 13 489 5.32e-18 86.3
Msa1262650 MtrunA17_Chr1g0164871 22.934 484 287 10 42 446 13 489 6.88e-18 85.9
Msa1262650 MtrunA17_Chr8g0376611 27.652 264 157 8 101 330 11 274 8.09e-17 82.8
Msa1262650 MtrunA17_Chr8g0376611 37.383 107 58 2 344 445 382 484 1.76e-12 69.3
Msa1262650 MtrunA17_Chr5g0407441 29.487 234 131 7 238 440 475 705 9.27e-17 82.8
Msa1262650 MtrunA17_Chr3g0146061 29.412 221 114 4 256 440 509 723 1.05e-16 82.8
Msa1262650 MtrunA17_Chr8g0370151 31.100 209 110 6 264 440 138 344 3.89e-16 79.7
Msa1262650 MtrunA17_Chr5g0437021 24.146 410 252 7 92 446 84 489 1.81e-15 78.6
Msa1262650 MtrunA17_Chr2g0290181 38.095 105 64 1 343 446 454 558 2.28e-15 78.6
Msa1262650 MtrunA17_Chr2g0290181 23.846 260 159 7 110 331 88 346 6.94e-13 70.5
Msa1262650 MtrunA17_Chr8g0376631 25.000 256 158 6 110 331 87 342 2.46e-15 78.2
Msa1262650 MtrunA17_Chr8g0376631 35.514 107 60 2 344 445 451 553 1.18e-12 70.1
Msa1262650 MtrunA17_Chr3g0144261 28.704 216 110 5 261 440 506 713 6.05e-15 77.4
Msa1262650 MtrunA17_Chr3g0144261 29.189 185 101 4 80 235 32 215 2.68e-11 65.9
Msa1262650 MtrunA17_Chr2g0303701 26.295 251 152 8 112 330 89 338 1.77e-14 75.5
Msa1262650 MtrunA17_Chr5g0434251 36.111 108 60 2 344 446 38 141 3.46e-12 64.3
Msa1262650 MtrunA17_Chr2g0290161 24.576 236 161 7 110 331 21 253 4.23e-12 67.8
Msa1262650 MtrunA17_Chr2g0290161 32.593 135 84 2 318 445 330 464 5.31e-11 64.7
Msa1262650 MtrunA17_Chr3g0115771 23.077 208 147 3 211 416 75 271 4.51e-12 66.2
Msa1262650 MtrunA17_Chr5g0434231 31.429 140 92 3 101 236 14 153 2.18e-11 62.0
Msa1262650 MtrunA17_Chr8g0376601 25.296 253 155 7 112 330 89 341 2.42e-11 65.9
Msa1262650 MtrunA17_Chr8g0376601 40.217 92 54 1 344 434 450 541 6.54e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262650 AT5G18840.1 63.395 489 125 5 1 445 1 479 0.0 600
Msa1262650 AT2G48020.2 55.378 437 152 3 51 445 27 462 1.94e-171 489
Msa1262650 AT2G48020.1 55.378 437 152 3 51 445 27 462 1.94e-171 489
Msa1262650 AT3G05150.1 49.076 487 185 8 3 444 1 469 5.56e-156 450
Msa1262650 AT3G05150.3 49.076 487 185 8 3 444 1 469 5.56e-156 450
Msa1262650 AT3G05150.2 49.076 487 185 8 3 444 1 469 6.62e-156 451
Msa1262650 AT1G54730.2 51.288 427 165 4 57 441 37 462 1.33e-149 434
Msa1262650 AT1G54730.5 50.856 409 173 4 57 441 37 441 2.37e-139 407
Msa1262650 AT1G54730.3 50.125 399 156 4 57 413 37 434 1.16e-134 395
Msa1262650 AT1G54730.4 49.606 381 164 4 57 413 37 413 2.40e-124 367
Msa1262650 AT3G20460.1 40.974 493 226 7 3 445 10 487 1.72e-120 360
Msa1262650 AT2G48020.4 53.061 343 118 3 51 351 27 368 3.80e-120 356
Msa1262650 AT1G08930.1 42.222 450 217 3 41 448 47 495 7.73e-120 359
Msa1262650 AT1G08930.2 42.222 450 217 3 41 448 47 495 7.73e-120 359
Msa1262650 AT2G48020.3 56.230 313 114 2 51 341 27 338 1.32e-119 353
Msa1262650 AT3G05165.3 38.136 472 237 4 18 447 8 466 7.37e-118 353
Msa1262650 AT3G05165.2 38.136 472 237 4 18 447 8 466 7.37e-118 353
Msa1262650 AT3G05165.1 38.136 472 237 4 18 447 8 466 7.37e-118 353
Msa1262650 AT1G08920.1 41.648 449 219 3 39 445 19 466 1.28e-117 352
Msa1262650 AT3G05160.1 40.355 451 226 3 39 447 8 457 2.04e-117 351
Msa1262650 AT1G08920.2 41.138 457 219 3 39 446 19 474 2.58e-117 352
Msa1262650 AT5G27350.1 42.634 448 214 3 39 444 18 464 4.52e-116 348
Msa1262650 AT1G54730.9 49.307 361 140 4 57 375 37 396 6.10e-114 341
Msa1262650 AT1G54730.7 49.307 361 140 4 57 375 37 396 6.10e-114 341
Msa1262650 AT5G27360.1 41.741 448 218 3 39 444 22 468 9.72e-113 340
Msa1262650 AT3G05155.1 39.827 462 231 4 27 445 2 459 3.45e-112 338
Msa1262650 AT5G27360.3 41.741 448 218 3 39 444 70 516 9.32e-112 339
Msa1262650 AT1G19450.1 40.541 481 228 7 15 442 10 485 1.09e-110 335
Msa1262650 AT1G75220.1 40.928 474 230 5 18 442 12 484 1.33e-109 332
Msa1262650 AT3G05400.1 40.991 444 219 3 40 441 14 456 6.37e-109 330
Msa1262650 AT4G04750.1 39.186 467 238 5 26 447 9 474 4.39e-107 326
Msa1262650 AT4G04750.2 39.186 467 238 5 26 447 9 474 4.39e-107 326
Msa1262650 AT1G08890.1 40.909 462 229 4 25 444 1 460 1.06e-106 324
Msa1262650 AT4G04760.1 40.000 440 218 5 53 447 32 470 1.73e-106 324
Msa1262650 AT4G04750.3 39.186 467 238 5 26 447 53 518 2.10e-106 325
Msa1262650 AT1G08920.3 42.145 401 189 3 51 409 31 430 2.60e-106 323
Msa1262650 AT3G05165.6 38.041 439 217 4 18 414 8 433 7.93e-106 323
Msa1262650 AT4G04760.2 40.319 439 215 6 53 447 32 467 9.48e-106 322
Msa1262650 AT3G05160.3 40.049 407 201 3 83 447 3 408 3.82e-104 316
Msa1262650 AT3G05160.2 40.049 407 201 3 83 447 3 408 3.82e-104 316
Msa1262650 AT1G54730.11 52.862 297 117 2 57 331 37 332 4.36e-104 313
Msa1262650 AT1G54730.8 48.688 343 148 4 57 375 37 375 6.12e-104 315
Msa1262650 AT1G08900.1 40.402 448 222 4 41 444 12 458 9.30e-104 317
Msa1262650 AT1G08900.2 40.402 448 222 4 41 444 12 458 9.30e-104 317
Msa1262650 AT3G05400.2 38.964 444 208 4 40 441 14 436 1.48e-97 300
Msa1262650 AT1G08900.5 40.288 417 206 3 70 444 1 416 2.93e-97 298
Msa1262650 AT1G08900.3 39.286 448 219 5 41 444 12 450 9.83e-97 298
Msa1262650 AT3G05165.4 36.706 425 214 4 18 400 8 419 1.86e-96 298
Msa1262650 AT3G05165.5 36.706 425 214 4 18 400 8 419 1.86e-96 298
Msa1262650 AT4G04760.3 39.756 410 201 5 83 447 3 411 6.70e-96 295
Msa1262650 AT1G54730.10 51.943 283 113 2 57 317 37 318 5.75e-94 287
Msa1262650 AT1G54730.6 51.943 283 113 2 57 317 37 318 5.75e-94 287
Msa1262650 AT1G08900.4 38.313 415 211 4 41 411 12 425 7.26e-87 272
Msa1262650 AT5G27360.2 40.274 365 175 3 122 444 1 364 1.21e-84 265
Msa1262650 AT5G27360.5 40.274 365 175 3 122 444 1 364 1.21e-84 265
Msa1262650 AT5G27360.4 36.715 414 202 4 39 410 22 417 1.01e-79 254
Msa1262650 AT3G05155.2 39.450 327 172 3 27 331 2 324 1.04e-76 242
Msa1262650 AT5G16150.2 27.669 459 267 8 43 446 96 544 9.36e-41 153
Msa1262650 AT5G16150.1 27.669 459 267 8 43 446 96 544 9.36e-41 153
Msa1262650 AT5G16150.3 27.669 459 267 8 43 446 96 544 9.36e-41 153
Msa1262650 AT2G43330.1 30.928 388 205 10 112 441 94 476 4.09e-39 148
Msa1262650 AT3G18830.1 25.403 496 278 12 23 441 15 495 6.44e-37 142
Msa1262650 AT2G16120.1 27.837 467 252 10 58 446 32 491 1.47e-36 140
Msa1262650 AT2G16130.1 28.078 463 256 11 58 446 32 491 1.60e-36 140
Msa1262650 AT5G17010.1 26.337 505 301 13 4 444 6 503 2.72e-36 140
Msa1262650 AT5G17010.3 26.337 505 301 13 4 444 6 503 2.72e-36 140
Msa1262650 AT5G17010.4 26.337 505 301 13 4 444 6 503 2.72e-36 140
Msa1262650 AT2G20780.1 27.615 478 284 9 21 441 25 497 5.06e-36 139
Msa1262650 AT3G03090.1 27.754 472 275 12 38 444 33 503 5.95e-36 139
Msa1262650 AT1G67300.1 27.975 479 286 11 18 444 18 489 1.29e-35 138
Msa1262650 AT1G67300.3 27.975 479 286 11 18 444 18 489 1.29e-35 138
Msa1262650 AT1G67300.2 27.917 480 286 11 18 444 18 490 2.30e-35 137
Msa1262650 AT1G05030.1 27.778 468 277 11 34 446 58 519 2.37e-35 137
Msa1262650 AT5G59250.1 27.579 475 278 12 34 442 80 554 2.55e-35 138
Msa1262650 AT1G05030.2 27.820 399 236 7 96 446 73 467 3.95e-34 133
Msa1262650 AT2G20780.2 29.496 417 229 10 85 441 28 439 8.03e-34 132
Msa1262650 AT2G18480.1 25.495 455 250 11 66 441 36 480 1.64e-32 129
Msa1262650 AT4G36670.1 26.096 456 261 11 63 445 28 480 3.28e-29 120
Msa1262650 AT1G79820.2 27.729 458 275 11 40 447 42 493 4.72e-29 119
Msa1262650 AT1G79820.1 27.729 458 275 11 40 447 42 493 4.72e-29 119
Msa1262650 AT1G67300.6 27.123 424 251 10 18 390 18 434 2.99e-28 116
Msa1262650 AT1G67300.7 27.123 424 251 10 18 390 18 434 2.99e-28 116
Msa1262650 AT1G67300.4 27.536 414 242 10 18 380 18 424 4.52e-27 113
Msa1262650 AT1G67300.5 27.536 414 242 10 18 380 18 424 4.52e-27 113
Msa1262650 AT5G26340.1 30.208 288 168 7 181 440 202 484 1.29e-25 109
Msa1262650 AT1G11260.1 25.728 412 246 9 92 446 83 491 1.71e-25 109
Msa1262650 AT4G21480.1 25.917 409 247 9 92 446 83 489 1.40e-23 103
Msa1262650 AT1G79820.4 26.884 398 240 9 40 390 42 435 3.14e-23 102
Msa1262650 AT5G26250.1 25.926 405 240 11 92 441 81 480 8.43e-23 101
Msa1262650 AT1G07340.1 25.373 402 245 8 92 440 82 481 5.26e-22 99.0
Msa1262650 AT5G23270.1 23.704 405 250 8 92 440 85 486 1.46e-21 97.4
Msa1262650 AT3G05960.1 24.814 403 247 10 92 441 80 479 1.58e-21 97.4
Msa1262650 AT4G02050.2 27.368 285 179 6 181 440 203 484 1.79e-20 94.4
Msa1262650 AT4G02050.1 27.368 285 179 6 181 440 203 484 1.79e-20 94.4
Msa1262650 AT1G34580.2 24.324 407 248 10 92 440 33 437 1.19e-19 91.7
Msa1262650 AT1G34580.1 24.324 407 248 10 92 440 83 487 1.78e-19 91.3
Msa1262650 AT3G19940.1 22.277 404 256 9 92 440 85 485 4.45e-19 90.1
Msa1262650 AT1G79820.3 26.018 442 255 12 40 447 42 445 7.66e-19 89.0
Msa1262650 AT1G50310.1 22.716 405 254 10 92 440 85 486 9.29e-18 85.9
Msa1262650 AT5G61520.1 26.087 299 166 9 181 440 205 487 9.47e-18 85.9
Msa1262650 AT5G61520.2 26.087 299 166 9 181 440 157 439 1.02e-17 85.5
Msa1262650 AT1G20840.2 29.469 207 116 4 264 440 509 715 4.71e-17 84.3
Msa1262650 AT1G20840.1 29.469 207 116 4 264 440 509 715 4.71e-17 84.3
Msa1262650 AT1G77210.2 24.324 407 243 10 92 440 86 485 5.62e-17 83.6
Msa1262650 AT1G77210.1 24.324 407 243 10 92 440 86 485 5.62e-17 83.6
Msa1262650 AT3G19930.1 22.414 406 256 9 92 441 82 484 5.63e-17 83.6
Msa1262650 AT3G19930.2 22.414 406 256 9 92 441 82 484 5.63e-17 83.6
Msa1262650 AT1G30220.1 29.197 274 151 11 113 350 92 358 9.73e-17 83.2
Msa1262650 AT1G30220.1 34.951 103 66 1 344 445 455 557 5.52e-13 71.2
Msa1262650 AT1G50310.2 23.529 340 225 7 134 440 6 343 1.17e-16 81.6
Msa1262650 AT3G51490.3 30.918 207 113 5 264 440 460 666 2.82e-16 82.0
Msa1262650 AT3G51490.2 30.435 207 114 5 264 440 510 716 2.88e-16 82.0
Msa1262650 AT2G35740.1 40.777 103 60 1 344 445 458 560 5.71e-16 80.9
Msa1262650 AT2G35740.1 23.273 275 170 8 96 331 73 345 1.74e-11 66.6
Msa1262650 AT1G54730.1 55.738 61 27 0 103 163 1 61 8.87e-16 72.0
Msa1262650 AT1G77210.3 26.897 290 175 8 181 440 54 336 1.06e-15 78.6
Msa1262650 AT4G35300.5 30.317 221 112 5 256 440 311 525 1.31e-15 79.3
Msa1262650 AT4G35300.4 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.4 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.8 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.8 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.6 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.6 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.11 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.11 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.1 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.1 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.10 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.10 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.7 30.317 221 112 5 256 440 508 722 1.85e-15 79.3
Msa1262650 AT4G35300.7 31.915 188 94 7 80 235 32 217 5.33e-11 65.5
Msa1262650 AT4G35300.9 30.317 221 112 5 256 440 498 712 1.93e-15 79.3
Msa1262650 AT4G35300.9 31.915 188 94 7 80 235 32 217 5.25e-11 65.5
Msa1262650 AT4G35300.2 30.317 221 112 5 256 440 498 712 1.93e-15 79.3
Msa1262650 AT4G35300.2 31.915 188 94 7 80 235 32 217 5.25e-11 65.5
Msa1262650 AT4G35300.3 30.317 221 112 5 256 440 498 712 1.93e-15 79.3
Msa1262650 AT4G35300.3 31.915 188 94 7 80 235 32 217 5.25e-11 65.5
Msa1262650 AT4G16480.2 36.893 103 64 1 344 445 459 561 7.12e-15 77.4
Msa1262650 AT4G16480.2 24.324 259 155 8 112 331 90 346 2.71e-11 66.2
Msa1262650 AT4G16480.3 36.893 103 64 1 344 445 459 561 7.12e-15 77.4
Msa1262650 AT4G16480.3 24.324 259 155 8 112 331 90 346 2.71e-11 66.2
Msa1262650 AT4G16480.1 36.893 103 64 1 344 445 459 561 7.12e-15 77.4
Msa1262650 AT4G16480.1 24.324 259 155 8 112 331 90 346 2.71e-11 66.2
Msa1262650 AT3G51490.1 29.064 203 114 5 264 440 510 708 8.25e-14 74.3
Msa1262650 AT1G79820.5 25.602 332 179 10 147 447 89 383 2.45e-12 68.6

Find 95 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATTTCAATTAGCTTTA+AGG 0.075404 8_2:-65451648 Msa1262650:CDS
TCAGATTGGTGTTGGGTTAA+TGG 0.172297 8_2:-65451301 Msa1262650:intron
ATGATATTGAATCTAATAAA+AGG 0.189395 8_2:-65453218 Msa1262650:CDS
CTACGAAAAGAATAGTTAAA+AGG 0.199601 8_2:+65449946 None:intergenic
ACCAGCCATCTTGGAGATTC+AGG 0.209208 8_2:+65451769 None:intergenic
ACAGGTTCCATTCACTGTTT+TGG 0.231277 8_2:-65450973 Msa1262650:intron
CTGCAGCTTATGATTGTTAT+TGG 0.236773 8_2:-65451997 Msa1262650:intron
GGATCCTTACTCACTTGATA+TGG 0.251939 8_2:-65452412 Msa1262650:CDS
TCTAATAAAAGGGCTGAAAA+TGG 0.259766 8_2:-65453207 Msa1262650:CDS
CCTTGTCTTTCCTTGCTGAT+TGG 0.262460 8_2:-65451805 Msa1262650:CDS
CAGAACGCGCGTGTTTGTTC+TGG 0.275163 8_2:+65451415 None:intergenic
CACCCACTCAAGCAGCTATA+AGG 0.283097 8_2:-65452882 Msa1262650:CDS
ATTAGCTGTTGCCGGCATTC+TGG 0.305371 8_2:-65450635 Msa1262650:intron
CCTTCCTAAAGTTAAGCTTT+TGG 0.312442 8_2:-65451445 Msa1262650:CDS
TCCAGACTTATCCATCAAAA+TGG 0.331748 8_2:+65450947 None:intergenic
TCTGTTGGAATTAACGGTAT+TGG 0.337503 8_2:-65451267 Msa1262650:CDS
TTACTTGCAGGACTTTCTTC+AGG 0.356014 8_2:-65451119 Msa1262650:intron
TCAACAGGATTCTGCATAAC+AGG 0.363541 8_2:-65452559 Msa1262650:CDS
AGCACATTTATTGCTGTTTG+CGG 0.368183 8_2:-65453162 Msa1262650:CDS
GTTGAGAGTGTAGATGTAAA+TGG 0.370198 8_2:-65453300 Msa1262650:CDS
AAATCCAAAAGCTTAACTTT+AGG 0.372311 8_2:+65451441 None:intergenic
GATAAATTGGCTAGGAGCTT+GGG 0.383530 8_2:-65450127 Msa1262650:CDS
CAGATTTCATTGGTCGAAAA+GGG 0.392522 8_2:-65452678 Msa1262650:CDS
CAACAATCTGTTGGAATTAA+CGG 0.393948 8_2:-65451273 Msa1262650:CDS
TTGGAATGGGACCGGTTCCT+TGG 0.401715 8_2:-65450491 Msa1262650:CDS
TTTGGCTCTTTAGTAACAAT+TGG 0.412212 8_2:-65452736 Msa1262650:CDS
TAGATGTTTACCAGCCATCT+TGG 0.419823 8_2:+65451760 None:intergenic
ACCCACTCAAGCAGCTATAA+GGG 0.423715 8_2:-65452881 Msa1262650:CDS
CTTATGACCTGGAGTTCTCC+TGG 0.424660 8_2:-65450081 Msa1262650:intron
ACAGATTTCATTGGTCGAAA+AGG 0.425706 8_2:-65452679 Msa1262650:CDS
GAAGGGAACTGCTGGGAGTT+TGG 0.425912 8_2:-65450157 Msa1262650:CDS
TGATAAATTGGCTAGGAGCT+TGG 0.429952 8_2:-65450128 Msa1262650:CDS
ATGCCGGCAACAGCTAATAT+TGG 0.441944 8_2:+65450640 None:intergenic
AGGGCTGAAAATGGATCCAT+TGG 0.444115 8_2:-65453198 Msa1262650:CDS
CCAGCCATCTTGGAGATTCA+GGG 0.444206 8_2:+65451770 None:intergenic
ATCCATGTGAAGGGAACTGC+TGG 0.445566 8_2:-65450165 Msa1262650:CDS
ATCCTTTCCATGTTGAATGA+AGG 0.446874 8_2:+65453257 None:intergenic
GTAACAATTGGTGCAATGCT+TGG 0.448522 8_2:-65452724 Msa1262650:CDS
GGCAGGATTACAGATTTCAT+TGG 0.449614 8_2:-65452688 Msa1262650:CDS
GTACCAATATTAGCTGTTGC+CGG 0.451967 8_2:-65450643 Msa1262650:CDS
TGGAATGGGACCGGTTCCTT+GGG 0.455242 8_2:-65450490 Msa1262650:CDS
CTTTCAACTTTCTTATGACC+TGG 0.456290 8_2:-65450092 Msa1262650:CDS
ATAGAATTTACCGTTATAAG+TGG 0.463692 8_2:+65450918 None:intergenic
TAATTCATATTGATGAATTG+AGG 0.465528 8_2:+65449871 None:intergenic
ATGGTATGTCAACAATCTGT+TGG 0.467240 8_2:-65451282 Msa1262650:CDS
GCATCAGTCTCATTCTTACT+AGG 0.467631 8_2:-65451973 Msa1262650:CDS
CTTCCCATATCAAGTGAGTA+AGG 0.470057 8_2:+65452408 None:intergenic
GACATTATTACCCAAGGAAC+CGG 0.473568 8_2:+65450480 None:intergenic
AAATGATATCAGATTGGTGT+TGG 0.483617 8_2:-65451309 Msa1262650:intron
AATTGGAGTTATTTCATATG+TGG 0.485138 8_2:-65452367 Msa1262650:intron
ATGGCTCCCAAAACAGTGAA+TGG 0.486802 8_2:+65450966 None:intergenic
TACGAAAAGAATAGTTAAAA+GGG 0.488431 8_2:+65449947 None:intergenic
TCCTTTCCATGTTGAATGAA+GGG 0.492314 8_2:+65453258 None:intergenic
CCAAAAGCTTAACTTTAGGA+AGG 0.500355 8_2:+65451445 None:intergenic
TGATATTGAATCTAATAAAA+GGG 0.503214 8_2:-65453217 Msa1262650:CDS
CCCTGAATCTCCAAGATGGC+TGG 0.504031 8_2:-65451770 Msa1262650:intron
CAGGCAATGAGATTGTCAAC+AGG 0.507534 8_2:-65452574 Msa1262650:CDS
TGCCCTTATAGCTGCTTGAG+TGG 0.509964 8_2:+65452879 None:intergenic
GATCCTTACTCACTTGATAT+GGG 0.510417 8_2:-65452411 Msa1262650:CDS
TTAGCTTTAAGGCGACTTCG+AGG 0.514780 8_2:-65451637 Msa1262650:CDS
TCAGAACTTGCTGCTTGAGT+TGG 0.516261 8_2:-65450665 Msa1262650:CDS
TGGAAGAAGACCACTTATAA+CGG 0.531043 8_2:-65450928 Msa1262650:intron
TCAGAGACATTTGTAGCAGC+TGG 0.533808 8_2:-65451234 Msa1262650:intron
AATGATATCAGATTGGTGTT+GGG 0.554092 8_2:-65451308 Msa1262650:intron
GTGCTTACCAGGAGAACTCC+AGG 0.554100 8_2:+65450074 None:intergenic
ACCCTTCATTCAACATGGAA+AGG 0.557850 8_2:-65453259 Msa1262650:CDS
CATAGCCTATGCTTGTATGC+AGG 0.559674 8_2:-65451084 Msa1262650:intron
AATTAGACTCACCAGAATGC+CGG 0.560550 8_2:+65450624 None:intergenic
AAACAACCCTTCATTCAACA+TGG 0.567509 8_2:-65453264 Msa1262650:CDS
GCAGTTCCCTTCACATGGAT+AGG 0.570105 8_2:+65450168 None:intergenic
ACCTCAGACATTATTACCCA+AGG 0.570857 8_2:+65450474 None:intergenic
TCCCAGCAGTTCCCTTCACA+TGG 0.574617 8_2:+65450163 None:intergenic
GATCTTTCCTATCCATGTGA+AGG 0.581046 8_2:-65450175 Msa1262650:CDS
TGGAGAAAACTAGCTCTAGC+GGG 0.588031 8_2:-65451937 Msa1262650:intron
TTGGAGCTATAACAAGTGGC+AGG 0.593137 8_2:-65452705 Msa1262650:CDS
GCCCTTATAGCTGCTTGAGT+GGG 0.596062 8_2:+65452880 None:intergenic
ATCTTTCCTATCCATGTGAA+GGG 0.597998 8_2:-65450174 Msa1262650:CDS
AACTACCTGCATACAAGCAT+AGG 0.598263 8_2:+65451079 None:intergenic
CTGCATACAAGCATAGGCTA+TGG 0.598402 8_2:+65451085 None:intergenic
TAGCTTTAAGGCGACTTCGA+GGG 0.600181 8_2:-65451636 Msa1262650:CDS
CCAATCAGCAAGGAAAGACA+AGG 0.603396 8_2:+65451805 None:intergenic
TGAAAATGGATCCATTGGAA+TGG 0.608384 8_2:-65453193 Msa1262650:CDS
TGTTACTAAAGAGCCAAACA+TGG 0.612922 8_2:+65452741 None:intergenic
TTGGAGAAAACTAGCTCTAG+CGG 0.615254 8_2:-65451938 Msa1262650:CDS
TTATCCCTGAATCTCCAAGA+TGG 0.617977 8_2:-65451774 Msa1262650:CDS
CAGGATTCTGCATAACAGGA+TGG 0.623365 8_2:-65452555 Msa1262650:CDS
AGATTTCATTGGTCGAAAAG+GGG 0.627846 8_2:-65452677 Msa1262650:intron
TCCTTGGGTAATAATGTCTG+AGG 0.631484 8_2:-65450475 Msa1262650:intron
GCTGAGCAGAACCATTCCAA+TGG 0.635982 8_2:+65453182 None:intergenic
AATGACAATTGAGCAGCACA+AGG 0.639967 8_2:-65453325 Msa1262650:CDS
ATGCTTGGAGCTATAACAAG+TGG 0.641914 8_2:-65452709 Msa1262650:CDS
AAGTTAGTCCCAGAAACCAA+AGG 0.659062 8_2:-65449921 Msa1262650:CDS
AAAGCACAAACCAATCAGCA+AGG 0.672054 8_2:+65451795 None:intergenic
TCCATGTGAAGGGAACTGCT+GGG 0.672421 8_2:-65450164 Msa1262650:CDS
TCTTAATCTATCTATCTCTG+AGG 0.681834 8_2:-65452854 Msa1262650:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGATATTGAATCTAATAAA+AGG - chr8_2:65449981-65450000 Msa1262650:intron 15.0%
!! TGATATTGAATCTAATAAAA+GGG - chr8_2:65449982-65450001 Msa1262650:intron 15.0%
!!! TTTATTTTCCTTTCAAAATA+TGG - chr8_2:65450118-65450137 Msa1262650:CDS 15.0%
!!! TCAATTTTTTTTCATTGATT+AGG - chr8_2:65450205-65450224 Msa1262650:intron 15.0%
!! ATTCATCCAATAAATAAAAA+AGG - chr8_2:65450245-65450264 Msa1262650:intron 15.0%
!! TTCATCCAATAAATAAAAAA+GGG - chr8_2:65450246-65450265 Msa1262650:intron 15.0%
!! TATAAAATTAAATGTCAATG+AGG + chr8_2:65450391-65450410 None:intergenic 15.0%
!!! TTTATACTATACTTTTTTGA+AGG - chr8_2:65450405-65450424 Msa1262650:intron 15.0%
!!! TATAGTTTTGATTGAATTTT+TGG + chr8_2:65451839-65451858 None:intergenic 15.0%
!!! TAATTTGAAAATGTTGATTA+AGG - chr8_2:65452593-65452612 Msa1262650:intron 15.0%
!! ACAACTAATAATAATGTCTT+CGG - chr8_2:65450428-65450447 Msa1262650:intron 20.0%
!!! TATATGCACTTTACAATTTT+AGG - chr8_2:65450571-65450590 Msa1262650:intron 20.0%
!!! AATTTTTTTTTTTCAGGCTA+AGG - chr8_2:65451516-65451535 Msa1262650:intron 20.0%
!!! AAGAATTTCAATTAGCTTTA+AGG - chr8_2:65451551-65451570 Msa1262650:intron 20.0%
!!! TTTTGAATCGAATCAATTAA+GGG + chr8_2:65451642-65451661 None:intergenic 20.0%
!!! ATTTTGAATCGAATCAATTA+AGG + chr8_2:65451643-65451662 None:intergenic 20.0%
!! ATGTATGAGAAATTCATATA+GGG + chr8_2:65452152-65452171 None:intergenic 20.0%
!! AATGTATGAGAAATTCATAT+AGG + chr8_2:65452153-65452172 None:intergenic 20.0%
!! CTTATATTAAAATGAATGAC+AGG - chr8_2:65452208-65452227 Msa1262650:intron 20.0%
!!! TTTTGATAATACCATTGATA+AGG - chr8_2:65452320-65452339 Msa1262650:intron 20.0%
!!! TTTGATAATACCATTGATAA+GGG - chr8_2:65452321-65452340 Msa1262650:intron 20.0%
!!! TTTTATAAAATCGACTTATG+AGG + chr8_2:65452912-65452931 None:intergenic 20.0%
!! TTCATCTTAATTAGCTAAAT+TGG - chr8_2:65453173-65453192 Msa1262650:CDS 20.0%
!! TACGAAAAGAATAGTTAAAA+GGG + chr8_2:65453255-65453274 None:intergenic 20.0%
! ATGAAAAAAAATTGACACAG+AGG + chr8_2:65450200-65450219 None:intergenic 25.0%
!!! GCAAACCCTTTTTTATTTAT+TGG + chr8_2:65450254-65450273 None:intergenic 25.0%
!! TTAGCTGAAAGCTATTATTT+TGG - chr8_2:65450278-65450297 Msa1262650:intron 25.0%
! AAATTAAATGTCAATGAGGA+GGG + chr8_2:65450387-65450406 None:intergenic 25.0%
! AAAATTAAATGTCAATGAGG+AGG + chr8_2:65450388-65450407 None:intergenic 25.0%
!!! TAAGGCTTGTTAATAATGAA+TGG + chr8_2:65450598-65450617 None:intergenic 25.0%
!!! TGTGTTATTCTTTTTAATGC+AGG - chr8_2:65450766-65450785 Msa1262650:intron 25.0%
!! AATTGGAGTTATTTCATATG+TGG - chr8_2:65450832-65450851 Msa1262650:intron 25.0%
!! CTATTAGAAAGTTTAAGATG+AGG - chr8_2:65450865-65450884 Msa1262650:intron 25.0%
! TACATAGCAAAAATTGTAAC+AGG - chr8_2:65450933-65450952 Msa1262650:CDS 25.0%
! CTATTTCAGCTATATATACA+GGG + chr8_2:65450960-65450979 None:intergenic 25.0%
! GCATTAAGTGTATCTAATTA+TGG - chr8_2:65451321-65451340 Msa1262650:intron 25.0%
!!! GACTTTGTTTGAATTTTGAA+AGG - chr8_2:65451364-65451383 Msa1262650:intron 25.0%
!!! TGAGTATTTTTTATGTGACT+AGG - chr8_2:65451709-65451728 Msa1262650:intron 25.0%
! AAATCCAAAAGCTTAACTTT+AGG + chr8_2:65451761-65451780 None:intergenic 25.0%
!!! ATATTCAGAAAGTATCTAAC+TGG - chr8_2:65451864-65451883 Msa1262650:intron 25.0%
! ATAGAATTTACCGTTATAAG+TGG + chr8_2:65452284-65452303 None:intergenic 25.0%
!! TTGATAATACCATTGATAAG+GGG - chr8_2:65452322-65452341 Msa1262650:intron 25.0%
!!! TTTTTAGGTTGTTTTATGAC+TGG - chr8_2:65452396-65452415 Msa1262650:CDS 25.0%
! AAAGTTTCAAAATTGACCAA+TGG + chr8_2:65452491-65452510 None:intergenic 25.0%
! AAACTTTGTGTATTATTCCA+TGG - chr8_2:65452504-65452523 Msa1262650:intron 25.0%
!! GAAAATGTTGATTAAGGAAT+CGG - chr8_2:65452599-65452618 Msa1262650:intron 25.0%
!!! GTTTGGTAGTTTTGATAAAT+TGG - chr8_2:65453059-65453078 Msa1262650:intron 25.0%
!! ACATGTATCTTCTATCTTTT+TGG - chr8_2:65453198-65453217 Msa1262650:CDS 25.0%
!! CATGTATCTTCTATCTTTTT+GGG - chr8_2:65453199-65453218 Msa1262650:CDS 25.0%
!!! GGTACATTATTTTTATATGC+TGG - chr8_2:65453224-65453243 Msa1262650:CDS 25.0%
! CTACGAAAAGAATAGTTAAA+AGG + chr8_2:65453256-65453275 None:intergenic 25.0%
! AAAAACATTGGAAGAAATTC+AGG - chr8_2:65453301-65453320 Msa1262650:CDS 25.0%
TCTAATAAAAGGGCTGAAAA+TGG - chr8_2:65449992-65450011 Msa1262650:intron 30.0%
!! CTTATGCACCATATTTTGAA+AGG + chr8_2:65450129-65450148 None:intergenic 30.0%
!!! GGATGAATGTGTTTTAGTTT+TGG + chr8_2:65450233-65450252 None:intergenic 30.0%
TCTTAATCTATCTATCTCTG+AGG - chr8_2:65450345-65450364 Msa1262650:intron 30.0%
AATTAAATGTCAATGAGGAG+GGG + chr8_2:65450386-65450405 None:intergenic 30.0%
!! TTTGGCTCTTTAGTAACAAT+TGG - chr8_2:65450463-65450482 Msa1262650:intron 30.0%
TAACAAGCCTTAAAATTCAC+AGG - chr8_2:65450606-65450625 Msa1262650:intron 30.0%
!!! GTTAGCTGTCTTTTTTTCAA+AGG - chr8_2:65450666-65450685 Msa1262650:CDS 30.0%
! TGCAACATTCTTTTTGTCTT+AGG + chr8_2:65450716-65450735 None:intergenic 30.0%
! TTTTTCACAGGATATGGAAT+TGG - chr8_2:65450815-65450834 Msa1262650:intron 30.0%
! GCTATTTCAGCTATATATAC+AGG + chr8_2:65450961-65450980 None:intergenic 30.0%
GTACGACATAGAAGTAATTA+CGG - chr8_2:65451109-65451128 Msa1262650:CDS 30.0%
!!! TACTAGGAAGTGTTTTAAGT+TGG - chr8_2:65451242-65451261 Msa1262650:CDS 30.0%
ACTGTATATTACAGCATAAG+AGG - chr8_2:65451471-65451490 Msa1262650:CDS 30.0%
!!! TTTTTTTTTCAGGCTAAGGT+TGG - chr8_2:65451520-65451539 Msa1262650:intron 30.0%
TGGTTGAAATGATATCAGAT+TGG - chr8_2:65451884-65451903 Msa1262650:intron 30.0%
AAATGATATCAGATTGGTGT+TGG - chr8_2:65451890-65451909 Msa1262650:intron 30.0%
! AATGATATCAGATTGGTGTT+GGG - chr8_2:65451891-65451910 Msa1262650:intron 30.0%
CAACAATCTGTTGGAATTAA+CGG - chr8_2:65451926-65451945 Msa1262650:intron 30.0%
TGGATAAAGACACTTCTATT+AGG + chr8_2:65452353-65452372 None:intergenic 30.0%
CGTATATCTGATACAATTTC+AGG + chr8_2:65452673-65452692 None:intergenic 30.0%
CGATATAAAAACCGAATACA+AGG - chr8_2:65452944-65452963 Msa1262650:intron 30.0%
!!! GTAGTTTTGATAAATTGGCT+AGG - chr8_2:65453064-65453083 Msa1262650:intron 30.0%
AGATGAAGAACTTAAGTTTG+TGG + chr8_2:65453160-65453179 None:intergenic 30.0%
!! ATGTTTTTCCTTTGGTTTCT+GGG + chr8_2:65453289-65453308 None:intergenic 30.0%
!! AATGTTTTTCCTTTGGTTTC+TGG + chr8_2:65453290-65453309 None:intergenic 30.0%
AGAAACCAAAGGAAAAACAT+TGG - chr8_2:65453289-65453308 Msa1262650:CDS 30.0%
! TTCTTCCAATGTTTTTCCTT+TGG + chr8_2:65453297-65453316 None:intergenic 30.0%
! GTTGAGAGTGTAGATGTAAA+TGG - chr8_2:65449899-65449918 Msa1262650:CDS 35.0%
AAACAACCCTTCATTCAACA+TGG - chr8_2:65449935-65449954 Msa1262650:CDS 35.0%
TCCTTTCCATGTTGAATGAA+GGG + chr8_2:65449944-65449963 None:intergenic 35.0%
ATCCTTTCCATGTTGAATGA+AGG + chr8_2:65449945-65449964 None:intergenic 35.0%
TGAAAATGGATCCATTGGAA+TGG - chr8_2:65450006-65450025 Msa1262650:intron 35.0%
!! AGCACATTTATTGCTGTTTG+CGG - chr8_2:65450037-65450056 Msa1262650:intron 35.0%
!! GTTTGCGGTTCTTTTTCATT+TGG - chr8_2:65450052-65450071 Msa1262650:intron 35.0%
!!! CTGAAAGCTATTATTTTGGC+AGG - chr8_2:65450282-65450301 Msa1262650:intron 35.0%
!!! AAAGCTATTATTTTGGCAGG+TGG - chr8_2:65450285-65450304 Msa1262650:intron 35.0%
!!! AAGCTATTATTTTGGCAGGT+GGG - chr8_2:65450286-65450305 Msa1262650:intron 35.0%
TGTTACTAAAGAGCCAAACA+TGG + chr8_2:65450461-65450480 None:intergenic 35.0%
ACAGATTTCATTGGTCGAAA+AGG - chr8_2:65450520-65450539 Msa1262650:intron 35.0%
CAGATTTCATTGGTCGAAAA+GGG - chr8_2:65450521-65450540 Msa1262650:intron 35.0%
AGATTTCATTGGTCGAAAAG+GGG - chr8_2:65450522-65450541 Msa1262650:intron 35.0%
! CTCATTGCCTGTGAATTTTA+AGG + chr8_2:65450616-65450635 None:intergenic 35.0%
GATCCTTACTCACTTGATAT+GGG - chr8_2:65450788-65450807 Msa1262650:intron 35.0%
! GATATGGGAAGATTTTTCAC+AGG - chr8_2:65450803-65450822 Msa1262650:intron 35.0%
! GGAAGATTTTTCACAGGATA+TGG - chr8_2:65450809-65450828 Msa1262650:intron 35.0%
ATAGCACCAAAAAATCTTCG+AGG - chr8_2:65450976-65450995 Msa1262650:intron 35.0%
TTGCAACAACAAATCAGGTA+GGG - chr8_2:65451004-65451023 Msa1262650:intron 35.0%
CTGCAGAACAATAACAATCA+AGG + chr8_2:65451188-65451207 None:intergenic 35.0%
CTGCAGCTTATGATTGTTAT+TGG - chr8_2:65451202-65451221 Msa1262650:intron 35.0%
! CCAAAAGCTTAACTTTAGGA+AGG + chr8_2:65451757-65451776 None:intergenic 35.0%
! CCTTCCTAAAGTTAAGCTTT+TGG - chr8_2:65451754-65451773 Msa1262650:intron 35.0%
ATGGTATGTCAACAATCTGT+TGG - chr8_2:65451917-65451936 Msa1262650:intron 35.0%
TCTGTTGGAATTAACGGTAT+TGG - chr8_2:65451932-65451951 Msa1262650:intron 35.0%
GGACTTTCTTCAGGAAAAAT+TGG - chr8_2:65452089-65452108 Msa1262650:intron 35.0%
TCCAGACTTATCCATCAAAA+TGG + chr8_2:65452255-65452274 None:intergenic 35.0%
TGGAAGAAGACCACTTATAA+CGG - chr8_2:65452271-65452290 Msa1262650:intron 35.0%
!! AGAAGTGTCTTTATCCATGT+AGG - chr8_2:65452356-65452375 Msa1262650:intron 35.0%
! TCAGCAAGTGGAACATTTTT+AGG - chr8_2:65452381-65452400 Msa1262650:CDS 35.0%
TGGAATTGCTTTCTTTCTCA+AGG - chr8_2:65452416-65452435 Msa1262650:intron 35.0%
TATGATGTGTATCTCTCCAT+TGG - chr8_2:65452472-65452491 Msa1262650:intron 35.0%
TGTGTATTATTCCATGGATC+AGG - chr8_2:65452510-65452529 Msa1262650:intron 35.0%
! TACGTAGCAGCATTTTCAAT+TGG - chr8_2:65452689-65452708 Msa1262650:CDS 35.0%
! AGCAGCATTTTCAATTGGAA+TGG - chr8_2:65452694-65452713 Msa1262650:CDS 35.0%
! GCAGCATTTTCAATTGGAAT+GGG - chr8_2:65452695-65452714 Msa1262650:CDS 35.0%
! ATTTTCAATTGGAATGGGAC+CGG - chr8_2:65452700-65452719 Msa1262650:CDS 35.0%
ACGAACGATTATTGTGTTCA+TGG - chr8_2:65452805-65452824 Msa1262650:intron 35.0%
ATCTTTCCTATCCATGTGAA+GGG - chr8_2:65453025-65453044 Msa1262650:intron 35.0%
CTTTCAACTTTCTTATGACC+TGG - chr8_2:65453107-65453126 Msa1262650:intron 35.0%
!! TATCTTCTATCTTTTTGGGC+AGG - chr8_2:65453203-65453222 Msa1262650:CDS 35.0%
ACCCTTCATTCAACATGGAA+AGG - chr8_2:65449940-65449959 Msa1262650:CDS 40.0%
GTAACAATTGGTGCAATGCT+TGG - chr8_2:65450475-65450494 Msa1262650:intron 40.0%
ATGCTTGGAGCTATAACAAG+TGG - chr8_2:65450490-65450509 Msa1262650:CDS 40.0%
GGCAGGATTACAGATTTCAT+TGG - chr8_2:65450511-65450530 Msa1262650:CDS 40.0%
TCAACAGGATTCTGCATAAC+AGG - chr8_2:65450640-65450659 Msa1262650:CDS 40.0%
GGATCCTTACTCACTTGATA+TGG - chr8_2:65450787-65450806 Msa1262650:intron 40.0%
CTTCCCATATCAAGTGAGTA+AGG + chr8_2:65450794-65450813 None:intergenic 40.0%
!!! AGTCCACCTCGAAGATTTTT+TGG + chr8_2:65450985-65451004 None:intergenic 40.0%
TGGACTTGCAACAACAAATC+AGG - chr8_2:65450999-65451018 Msa1262650:intron 40.0%
CTTGCAACAACAAATCAGGT+AGG - chr8_2:65451003-65451022 Msa1262650:intron 40.0%
GCATCAGTCTCATTCTTACT+AGG - chr8_2:65451226-65451245 Msa1262650:intron 40.0%
!! TTGGAGAAAACTAGCTCTAG+CGG - chr8_2:65451261-65451280 Msa1262650:CDS 40.0%
! GGAGTGAAAGTTCTAACTGT+TGG - chr8_2:65451342-65451361 Msa1262650:intron 40.0%
AAAGCACAAACCAATCAGCA+AGG + chr8_2:65451407-65451426 None:intergenic 40.0%
TTATCCCTGAATCTCCAAGA+TGG - chr8_2:65451425-65451444 Msa1262650:CDS 40.0%
TAGATGTTTACCAGCCATCT+TGG + chr8_2:65451442-65451461 None:intergenic 40.0%
!! TCAGATTGGTGTTGGGTTAA+TGG - chr8_2:65451898-65451917 Msa1262650:intron 40.0%
TTTGTAGCAGCTGGTAAGTT+TGG - chr8_2:65451974-65451993 Msa1262650:CDS 40.0%
TTACTTGCAGGACTTTCTTC+AGG - chr8_2:65452080-65452099 Msa1262650:intron 40.0%
AACTACCTGCATACAAGCAT+AGG + chr8_2:65452123-65452142 None:intergenic 40.0%
! ACAGGTTCCATTCACTGTTT+TGG - chr8_2:65452226-65452245 Msa1262650:intron 40.0%
! CAGGTTCCATTCACTGTTTT+GGG - chr8_2:65452227-65452246 Msa1262650:intron 40.0%
!!! TGTTTTGGGAGCCATTTTGA+TGG - chr8_2:65452241-65452260 Msa1262650:intron 40.0%
!! GCCATTTTGATGGATAAGTC+TGG - chr8_2:65452251-65452270 Msa1262650:intron 40.0%
TAGGCATTTCCCCTTATCAA+TGG + chr8_2:65452334-65452353 None:intergenic 40.0%
GTACCAATATTAGCTGTTGC+CGG - chr8_2:65452556-65452575 Msa1262650:CDS 40.0%
AATTAGACTCACCAGAATGC+CGG + chr8_2:65452578-65452597 None:intergenic 40.0%
GACATTATTACCCAAGGAAC+CGG + chr8_2:65452722-65452741 None:intergenic 40.0%
TCCTTGGGTAATAATGTCTG+AGG - chr8_2:65452724-65452743 Msa1262650:CDS 40.0%
ACCTCAGACATTATTACCCA+AGG + chr8_2:65452728-65452747 None:intergenic 40.0%
! TGTCTGAGGTAAGTGTCATT+TGG - chr8_2:65452738-65452757 Msa1262650:CDS 40.0%
TTTGGCAAAGCACACTTGAA+TGG - chr8_2:65452756-65452775 Msa1262650:intron 40.0%
!! AGCACACTTGAATGGTTTTG+TGG - chr8_2:65452764-65452783 Msa1262650:intron 40.0%
! TCTCTTTTCGATGTGTGACT+TGG + chr8_2:65452848-65452867 None:intergenic 40.0%
CACTGCATCTACCTTGTATT+CGG + chr8_2:65452958-65452977 None:intergenic 40.0%
GATCTTTCCTATCCATGTGA+AGG - chr8_2:65453024-65453043 Msa1262650:intron 40.0%
TGATAAATTGGCTAGGAGCT+TGG - chr8_2:65453071-65453090 Msa1262650:intron 40.0%
GATAAATTGGCTAGGAGCTT+GGG - chr8_2:65453072-65453091 Msa1262650:intron 40.0%
AAGTTAGTCCCAGAAACCAA+AGG - chr8_2:65453278-65453297 Msa1262650:CDS 40.0%
AGGGCTGAAAATGGATCCAT+TGG - chr8_2:65450001-65450020 Msa1262650:intron 45.0%
ACCCACTCAAGCAGCTATAA+GGG - chr8_2:65450318-65450337 Msa1262650:intron 45.0%
! CTTCGGCAGTTTTCCATGTT+TGG - chr8_2:65450445-65450464 Msa1262650:intron 45.0%
TTGGAGCTATAACAAGTGGC+AGG - chr8_2:65450494-65450513 Msa1262650:CDS 45.0%
CAGGCAATGAGATTGTCAAC+AGG - chr8_2:65450625-65450644 Msa1262650:intron 45.0%
CAGGATTCTGCATAACAGGA+TGG - chr8_2:65450644-65450663 Msa1262650:CDS 45.0%
CATCGAGACGAAGCAACATA+AGG + chr8_2:65450891-65450910 None:intergenic 45.0%
GCACCAAAAAATCTTCGAGG+TGG - chr8_2:65450979-65450998 Msa1262650:intron 45.0%
!! TGGAGAAAACTAGCTCTAGC+GGG - chr8_2:65451262-65451281 Msa1262650:CDS 45.0%
CCAATCAGCAAGGAAAGACA+AGG + chr8_2:65451397-65451416 None:intergenic 45.0%
CCTTGTCTTTCCTTGCTGAT+TGG - chr8_2:65451394-65451413 Msa1262650:intron 45.0%
!! TTAGCTTTAAGGCGACTTCG+AGG - chr8_2:65451562-65451581 Msa1262650:intron 45.0%
!! TAGCTTTAAGGCGACTTCGA+GGG - chr8_2:65451563-65451582 Msa1262650:intron 45.0%
TCAGAGACATTTGTAGCAGC+TGG - chr8_2:65451965-65451984 Msa1262650:CDS 45.0%
CTGCATACAAGCATAGGCTA+TGG + chr8_2:65452117-65452136 None:intergenic 45.0%
CATAGCCTATGCTTGTATGC+AGG - chr8_2:65452115-65452134 Msa1262650:intron 45.0%
ATGGCTCCCAAAACAGTGAA+TGG + chr8_2:65452236-65452255 None:intergenic 45.0%
! CAAGTTCTGATCCTGATCCA+TGG + chr8_2:65452524-65452543 None:intergenic 45.0%
!! TCAGAACTTGCTGCTTGAGT+TGG - chr8_2:65452534-65452553 Msa1262650:CDS 45.0%
ATGCCGGCAACAGCTAATAT+TGG + chr8_2:65452562-65452581 None:intergenic 45.0%
!!! TTAATAAATTTTTTTTTTTC+AGG - chr8_2:65451510-65451529 Msa1262650:intron 5.0%
GCTGAGCAGAACCATTCCAA+TGG + chr8_2:65450020-65450039 None:intergenic 50.0%
CACCCACTCAAGCAGCTATA+AGG - chr8_2:65450317-65450336 Msa1262650:intron 50.0%
GCCCTTATAGCTGCTTGAGT+GGG + chr8_2:65450322-65450341 None:intergenic 50.0%
TGCCCTTATAGCTGCTTGAG+TGG + chr8_2:65450323-65450342 None:intergenic 50.0%
CCAGCCATCTTGGAGATTCA+GGG + chr8_2:65451432-65451451 None:intergenic 50.0%
ACCAGCCATCTTGGAGATTC+AGG + chr8_2:65451433-65451452 None:intergenic 50.0%
CGCGCTACAACATTACTTGC+AGG - chr8_2:65452068-65452087 Msa1262650:intron 50.0%
TCCATGTAGGCTTCAGCAAG+TGG - chr8_2:65452369-65452388 Msa1262650:CDS 50.0%
! TCCACTTGCTGAAGCCTACA+TGG + chr8_2:65452373-65452392 None:intergenic 50.0%
ATTAGCTGTTGCCGGCATTC+TGG - chr8_2:65452564-65452583 Msa1262650:CDS 50.0%
GCAGTTCCCTTCACATGGAT+AGG + chr8_2:65453034-65453053 None:intergenic 50.0%
ATCCATGTGAAGGGAACTGC+TGG - chr8_2:65453034-65453053 Msa1262650:intron 50.0%
TCCATGTGAAGGGAACTGCT+GGG - chr8_2:65453035-65453054 Msa1262650:intron 50.0%
CTTATGACCTGGAGTTCTCC+TGG - chr8_2:65453118-65453137 Msa1262650:intron 50.0%
GGCAGTGTATTGTGCTTACC+AGG + chr8_2:65453139-65453158 None:intergenic 50.0%
CCCTGAATCTCCAAGATGGC+TGG - chr8_2:65451429-65451448 Msa1262650:CDS 55.0%
CAGAACGCGCGTGTTTGTTC+TGG + chr8_2:65451787-65451806 None:intergenic 55.0%
! TTGGAATGGGACCGGTTCCT+TGG - chr8_2:65452708-65452727 Msa1262650:CDS 55.0%
! TGGAATGGGACCGGTTCCTT+GGG - chr8_2:65452709-65452728 Msa1262650:CDS 55.0%
TCCCAGCAGTTCCCTTCACA+TGG + chr8_2:65453039-65453058 None:intergenic 55.0%
GAAGGGAACTGCTGGGAGTT+TGG - chr8_2:65453042-65453061 Msa1262650:intron 55.0%
GTGCTTACCAGGAGAACTCC+AGG + chr8_2:65453128-65453147 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 65449875 65453346 65449875 ID=Msa1262650;Name=Msa1262650
chr8_2 mRNA 65449875 65453346 65449875 ID=Msa1262650-mRNA-1;Parent=Msa1262650;Name=Msa1262650-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.06|0|1|1|1|16|0|448
chr8_2 exon 65453140 65453346 65453140 ID=Msa1262650-mRNA-1:exon:21264;Parent=Msa1262650-mRNA-1
chr8_2 exon 65452855 65452917 65452855 ID=Msa1262650-mRNA-1:exon:21263;Parent=Msa1262650-mRNA-1
chr8_2 exon 65452678 65452767 65452678 ID=Msa1262650-mRNA-1:exon:21262;Parent=Msa1262650-mRNA-1
chr8_2 exon 65452534 65452593 65452534 ID=Msa1262650-mRNA-1:exon:21261;Parent=Msa1262650-mRNA-1
chr8_2 exon 65452368 65452433 65452368 ID=Msa1262650-mRNA-1:exon:21260;Parent=Msa1262650-mRNA-1
chr8_2 exon 65451938 65452013 65451938 ID=Msa1262650-mRNA-1:exon:21259;Parent=Msa1262650-mRNA-1
chr8_2 exon 65451771 65451835 65451771 ID=Msa1262650-mRNA-1:exon:21258;Parent=Msa1262650-mRNA-1
chr8_2 exon 65451597 65451689 65451597 ID=Msa1262650-mRNA-1:exon:21257;Parent=Msa1262650-mRNA-1
chr8_2 exon 65451410 65451490 65451410 ID=Msa1262650-mRNA-1:exon:21256;Parent=Msa1262650-mRNA-1
chr8_2 exon 65451235 65451319 65451235 ID=Msa1262650-mRNA-1:exon:21255;Parent=Msa1262650-mRNA-1
chr8_2 exon 65451085 65451131 65451085 ID=Msa1262650-mRNA-1:exon:21254;Parent=Msa1262650-mRNA-1
chr8_2 exon 65450929 65450991 65450929 ID=Msa1262650-mRNA-1:exon:21253;Parent=Msa1262650-mRNA-1
chr8_2 exon 65450636 65450689 65450636 ID=Msa1262650-mRNA-1:exon:21252;Parent=Msa1262650-mRNA-1
chr8_2 exon 65450476 65450535 65450476 ID=Msa1262650-mRNA-1:exon:21251;Parent=Msa1262650-mRNA-1
chr8_2 exon 65450082 65450196 65450082 ID=Msa1262650-mRNA-1:exon:21250;Parent=Msa1262650-mRNA-1
chr8_2 exon 65449875 65449996 65449875 ID=Msa1262650-mRNA-1:exon:21249;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65453140 65453346 65453140 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65452855 65452917 65452855 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65452678 65452767 65452678 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65452534 65452593 65452534 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65452368 65452433 65452368 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65451938 65452013 65451938 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65451771 65451835 65451771 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65451597 65451689 65451597 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65451410 65451490 65451410 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65451235 65451319 65451235 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65451085 65451131 65451085 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65450929 65450991 65450929 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65450636 65450689 65450636 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65450476 65450535 65450476 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65450082 65450196 65450082 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
chr8_2 CDS 65449875 65449996 65449875 ID=Msa1262650-mRNA-1:cds;Parent=Msa1262650-mRNA-1
Gene Sequence

>Msa1262650

ATGACAATTGAGCAGCACAAGGATGTTGAGAGTGTAGATGTAAATGGACTTCGAGATTTGAAACAACCCTTCATTCAACATGGAAAGGATGCTACTGTTGACTATCATGATATTGAATCTAATAAAAGGGCTGAAAATGGATCCATTGGAATGGTTCTGCTCAGCACATTTATTGCTGTTTGCGGTTCTTTTTCATTTGGAACTTGTGTGGGCTATTCATCACCCACTCAAGCAGCTATAAGGGCAGATCTTAATCTATCTATCTCTGAGTTTTCCATGTTTGGCTCTTTAGTAACAATTGGTGCAATGCTTGGAGCTATAACAAGTGGCAGGATTACAGATTTCATTGGTCGAAAAGGGGCAATGAGATTGTCAACAGGATTCTGCATAACAGGATGGTTAGCTGTCTTTTTTTCAAAGGATCCTTACTCACTTGATATGGGAAGATTTTTCACAGGATATGGAATTGGAGTTATTTCATATGTGCTTATGATTGTTATTGGAGCATCAGTCTCATTCTTACTAGGAAGTGTTTTAAGTTGGAGAAAACTAGCTCTAGCGGGTCTTCTTCCTTGTCTTTCCTTGCTGATTGGTTTGTGCTTTATCCCTGAATCTCCAAGATGGCTGGCTAAGGTTGGTCGCGAAAAAGAATTTCAATTAGCTTTAAGGCGACTTCGAGGGAAGAATGTTGATATTTCTAATGAAGCTGATGAAATTCTTGATTATATTGAAACTCTTCAAAGCCTTCCTAAAGTTAAGCTTTTGGATTTGTTCCAGAACAAACACGCGCGTTCTGTAGTTATTGGTGTTGGGTTAATGGTATGTCAACAATCTGTTGGAATTAACGGTATTGGATTTTATACGTCAGAGACATTTGTAGCAGCTGGACTTTCTTCAGGAAAAATTGGTACCATAGCCTATGCTTGTATGCAGGTTCCATTCACTGTTTTGGGAGCCATTTTGATGGATAAGTCTGGAAGAAGACCACTTATAACGGATCAGAACTTGCTGCTTGAGTTGGTACCAATATTAGCTGTTGCCGGCATTCTGATATACGTAGCAGCATTTTCAATTGGAATGGGACCGGTTCCTTGGGTAATAATGTCTGAGATCTTTCCTATCCATGTGAAGGGAACTGCTGGGAGTTTGGTAGTTTTGATAAATTGGCTAGGAGCTTGGGTTGTTTCATATACTTTCAACTTTCTTATGACCTGGAGTTCTCCTGGTACATTATTTTTATATGCTGGATGTTCCCTTTTAACTATTCTTTTCGTAGCAAAGTTAGTCCCAGAAACCAAAGGAAAAACATTGGAAGAAATTCAGGCATGCCTCAATTCATCAATATGA

Protein sequence

>Msa1262650

MTIEQHKDVESVDVNGLRDLKQPFIQHGKDATVDYHDIESNKRAENGSIGMVLLSTFIAVCGSFSFGTCVGYSSPTQAAIRADLNLSISEFSMFGSLVTIGAMLGAITSGRITDFIGRKGAMRLSTGFCITGWLAVFFSKDPYSLDMGRFFTGYGIGVISYVLMIVIGASVSFLLGSVLSWRKLALAGLLPCLSLLIGLCFIPESPRWLAKVGREKEFQLALRRLRGKNVDISNEADEILDYIETLQSLPKVKLLDLFQNKHARSVVIGVGLMVCQQSVGINGIGFYTSETFVAAGLSSGKIGTIAYACMQVPFTVLGAILMDKSGRRPLITDQNLLLELVPILAVAGILIYVAAFSIGMGPVPWVIMSEIFPIHVKGTAGSLVVLINWLGAWVVSYTFNFLMTWSSPGTLFLYAGCSLLTILFVAKLVPETKGKTLEEIQACLNSSI*