Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217060 | XP_003609552.1 | 94.681 | 188 | 10 | 0 | 20 | 207 | 157 | 344 | 1.10e-115 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217060 | sp|Q93W28|Y4554_ARATH | 60.847 | 189 | 62 | 3 | 21 | 207 | 159 | 337 | 5.68e-68 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217060 | G7JHX1 | 94.681 | 188 | 10 | 0 | 20 | 207 | 157 | 344 | 5.25e-116 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1216740 | Msa1217060 | 0.831093 | 2.029224e-55 | -8.615850e-47 |
| Msa1216940 | Msa1217060 | 0.864413 | 1.237992e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217060 | MtrunA17_Chr4g0066521 | 94.681 | 188 | 10 | 0 | 20 | 207 | 157 | 344 | 1.01e-119 | 343 |
| Msa1217060 | MtrunA17_Chr2g0286841 | 58.586 | 198 | 60 | 3 | 19 | 207 | 158 | 342 | 2.93e-69 | 214 |
| Msa1217060 | MtrunA17_Chr8g0358391 | 54.054 | 148 | 49 | 4 | 69 | 206 | 203 | 341 | 8.35e-35 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1217060 | AT4G15545.1 | 60.847 | 189 | 62 | 3 | 21 | 207 | 159 | 337 | 5.77e-69 | 214 |
| Msa1217060 | AT1G16520.1 | 52.143 | 140 | 61 | 2 | 69 | 207 | 191 | 325 | 1.84e-35 | 127 |
| Msa1217060 | AT1G56080.1 | 51.095 | 137 | 63 | 3 | 69 | 203 | 173 | 307 | 1.43e-33 | 122 |
Find 49 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTCTCGTGTTTGTTTA+TGG | 0.149645 | 8_1:-79273240 | None:intergenic |
| CGAGCAATTTGGTGCATTCT+TGG | 0.245683 | 8_1:+79273195 | Msa1217060:CDS |
| TACCTCTCGTGTTTGTTTAT+GGG | 0.264711 | 8_1:-79273239 | None:intergenic |
| TGATGCTACAAGGAGATTAT+AGG | 0.290719 | 8_1:-79272451 | None:intergenic |
| CGTTTGTCTTACGAGCAATT+TGG | 0.341040 | 8_1:+79273184 | Msa1217060:CDS |
| TGCATTCTTGGCAAATGTTA+AGG | 0.388169 | 8_1:+79273207 | Msa1217060:CDS |
| TCAAGCTCTGACTCAGTAAC+AGG | 0.399934 | 8_1:+79272654 | Msa1217060:CDS |
| AGGAGTTCTTTCGCCAAGTC+AGG | 0.428311 | 8_1:+79272921 | Msa1217060:CDS |
| GATGCTACAAGGAGATTATA+GGG | 0.429794 | 8_1:-79272450 | None:intergenic |
| TCTTGAGGTTGAAAAGGAAA+TGG | 0.452117 | 8_1:-79272577 | None:intergenic |
| GATCTATACACTGTATTTGA+GGG | 0.453264 | 8_1:+79273389 | Msa1217060:CDS |
| AGATCTATACACTGTATTTG+AGG | 0.475765 | 8_1:+79273388 | Msa1217060:CDS |
| TCCATGCCCCATGTTTCAGA+TGG | 0.476104 | 8_1:+79272188 | Msa1217060:CDS |
| AAAAGGGACCTCACCTGACT+TGG | 0.492655 | 8_1:-79272934 | None:intergenic |
| GTTTCCACCATCTGAAACAT+GGG | 0.510696 | 8_1:-79272195 | None:intergenic |
| TCGTCTTGGAGACATAGGTC+TGG | 0.521585 | 8_1:-79272550 | None:intergenic |
| AGGAGATTATAGGGCACTCT+AGG | 0.523644 | 8_1:-79272441 | None:intergenic |
| ATGCCCCATGTTTCAGATGG+TGG | 0.526341 | 8_1:+79272191 | Msa1217060:CDS |
| TGGTTCTTTGTGATGCTACA+AGG | 0.526545 | 8_1:-79272461 | None:intergenic |
| ACAGGACGTACACGGGTGGA+TGG | 0.538809 | 8_1:+79272896 | Msa1217060:intron |
| AGTTTCCACCATCTGAAACA+TGG | 0.543260 | 8_1:-79272196 | None:intergenic |
| AAGGAAATGGAATGTCGTCT+TGG | 0.543959 | 8_1:-79272564 | None:intergenic |
| TGTGCCTCTTGAGGTTGAAA+AGG | 0.551240 | 8_1:-79272583 | None:intergenic |
| ACCATCTGAAACATGGGGCA+TGG | 0.554223 | 8_1:-79272189 | None:intergenic |
| CAAATTGCTCGTAAGACAAA+CGG | 0.554295 | 8_1:-79273183 | None:intergenic |
| TATTGAACCGCGACCTATCG+AGG | 0.558011 | 8_1:-79272631 | None:intergenic |
| CAGGACGTACACGGGTGGAT+GGG | 0.561363 | 8_1:+79272897 | Msa1217060:intron |
| ACGTACACGGGTGGATGGGA+AGG | 0.564243 | 8_1:+79272901 | Msa1217060:CDS |
| TATGCGTCACAGGACGTACA+CGG | 0.572220 | 8_1:+79272888 | Msa1217060:intron |
| GCTGAGGATCAAGAATCTGA+TGG | 0.577192 | 8_1:+79272224 | Msa1217060:CDS |
| ATAGGTCTGGATGTTCTCGT+TGG | 0.582395 | 8_1:-79272537 | None:intergenic |
| CAAGAGGCACACATGACGAC+AGG | 0.591536 | 8_1:+79272595 | Msa1217060:CDS |
| GAATGTCGTCTTGGAGACAT+AGG | 0.596807 | 8_1:-79272555 | None:intergenic |
| GATACTGATGCAGAAAGACT+AGG | 0.603214 | 8_1:-79272513 | None:intergenic |
| ACACCTCGGATTACTCCCAC+TGG | 0.606495 | 8_1:+79272483 | Msa1217060:CDS |
| AAGACTAGGAGGGGAACCAG+TGG | 0.607634 | 8_1:-79272499 | None:intergenic |
| TCAGTAACAGGATCACAAGC+TGG | 0.613501 | 8_1:+79272666 | Msa1217060:CDS |
| TGATGCAGAAAGACTAGGAG+GGG | 0.614363 | 8_1:-79272508 | None:intergenic |
| GTCGTCATGTGTGCCTCTTG+AGG | 0.616038 | 8_1:-79272592 | None:intergenic |
| AGACTAGGAGGGGAACCAGT+GGG | 0.617410 | 8_1:-79272498 | None:intergenic |
| ACTGATGCAGAAAGACTAGG+AGG | 0.641115 | 8_1:-79272510 | None:intergenic |
| AGTGGGAGTAATCCGAGGTG+TGG | 0.667663 | 8_1:-79272481 | None:intergenic |
| TTCCCATAAACAAACACGAG+AGG | 0.669860 | 8_1:+79273237 | Msa1217060:CDS |
| ATGCGTCACAGGACGTACAC+GGG | 0.672771 | 8_1:+79272889 | Msa1217060:intron |
| CTGATGCAGAAAGACTAGGA+GGG | 0.680063 | 8_1:-79272509 | None:intergenic |
| GAACCAGTGGGAGTAATCCG+AGG | 0.680105 | 8_1:-79272486 | None:intergenic |
| TTTCCACCATCTGAAACATG+GGG | 0.706290 | 8_1:-79272194 | None:intergenic |
| CATCACAAAGAACCACACCT+CGG | 0.720123 | 8_1:+79272469 | Msa1217060:CDS |
| GGCATGGAAGAAGATATAGA+CGG | 0.756774 | 8_1:-79272173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGTATGTATACACATT+TGG | - | chr8_1:79272274-79272293 | None:intergenic | 20.0% |
| !!! | ATTATAGTTGTTCATTTTTC+AGG | - | chr8_1:79272363-79272382 | None:intergenic | 20.0% |
| !!! | CATCTAGAAATGTTTAATTT+AGG | + | chr8_1:79272735-79272754 | Msa1217060:intron | 20.0% |
| !! | TAATGAAAACCTTCTTTATA+TGG | - | chr8_1:79272833-79272852 | None:intergenic | 20.0% |
| !!! | ATATAAAGAAGGTTTTCATT+AGG | + | chr8_1:79272832-79272851 | Msa1217060:intron | 20.0% |
| !! | TTCAAAATTTGAAGACAAAA+GGG | - | chr8_1:79272953-79272972 | None:intergenic | 20.0% |
| !! | TTTCAAAATTTGAAGACAAA+AGG | - | chr8_1:79272954-79272973 | None:intergenic | 20.0% |
| !!! | TTATTCTCTATTTTATCTCA+TGG | + | chr8_1:79273144-79273163 | Msa1217060:intron | 20.0% |
| !! | ATTATGTATGTATACACATT+TGG | - | chr8_1:79272274-79272293 | None:intergenic | 20.0% |
| !!! | ATTATAGTTGTTCATTTTTC+AGG | - | chr8_1:79272363-79272382 | None:intergenic | 20.0% |
| !!! | CATCTAGAAATGTTTAATTT+AGG | + | chr8_1:79272735-79272754 | Msa1217060:intron | 20.0% |
| !! | TAATGAAAACCTTCTTTATA+TGG | - | chr8_1:79272833-79272852 | None:intergenic | 20.0% |
| !!! | ATATAAAGAAGGTTTTCATT+AGG | + | chr8_1:79272832-79272851 | Msa1217060:intron | 20.0% |
| !! | TTCAAAATTTGAAGACAAAA+GGG | - | chr8_1:79272953-79272972 | None:intergenic | 20.0% |
| !! | TTTCAAAATTTGAAGACAAA+AGG | - | chr8_1:79272954-79272973 | None:intergenic | 20.0% |
| !!! | TTATTCTCTATTTTATCTCA+TGG | + | chr8_1:79273144-79273163 | Msa1217060:intron | 20.0% |
| ! | TTGCATCCTTATGAAAAATT+AGG | + | chr8_1:79272783-79272802 | Msa1217060:intron | 25.0% |
| !! | TAAGCACCTAATTTTTCATA+AGG | - | chr8_1:79272792-79272811 | None:intergenic | 25.0% |
| ! | TTAGCTCCTCAAATAAAAAT+AGG | + | chr8_1:79273058-79273077 | Msa1217060:intron | 25.0% |
| !! | CTTTTACATATTACAGTGAA+TGG | + | chr8_1:79273086-79273105 | Msa1217060:intron | 25.0% |
| !!! | AGTGAATGGCTAATTTTTTT+GGG | + | chr8_1:79273100-79273119 | Msa1217060:intron | 25.0% |
| !!! | TTTTTTTGGGCAAATTAGAT+TGG | + | chr8_1:79273113-79273132 | Msa1217060:intron | 25.0% |
| ! | ATCTCATGGTTGTTAATATT+AGG | + | chr8_1:79273158-79273177 | Msa1217060:intron | 25.0% |
| ! | TCTATTTACTGAAAAAAGCA+TGG | - | chr8_1:79273306-79273325 | None:intergenic | 25.0% |
| !! | AAAAAGCGGATGAAATTTTT+GGG | + | chr8_1:79273354-79273373 | Msa1217060:CDS | 25.0% |
| ! | TTGCATCCTTATGAAAAATT+AGG | + | chr8_1:79272783-79272802 | Msa1217060:intron | 25.0% |
| !! | TAAGCACCTAATTTTTCATA+AGG | - | chr8_1:79272792-79272811 | None:intergenic | 25.0% |
| ! | TTAGCTCCTCAAATAAAAAT+AGG | + | chr8_1:79273058-79273077 | Msa1217060:intron | 25.0% |
| !! | CTTTTACATATTACAGTGAA+TGG | + | chr8_1:79273086-79273105 | Msa1217060:intron | 25.0% |
| !!! | AGTGAATGGCTAATTTTTTT+GGG | + | chr8_1:79273100-79273119 | Msa1217060:intron | 25.0% |
| !!! | TTTTTTTGGGCAAATTAGAT+TGG | + | chr8_1:79273113-79273132 | Msa1217060:intron | 25.0% |
| ! | ATCTCATGGTTGTTAATATT+AGG | + | chr8_1:79273158-79273177 | Msa1217060:intron | 25.0% |
| ! | TCTATTTACTGAAAAAAGCA+TGG | - | chr8_1:79273306-79273325 | None:intergenic | 25.0% |
| !! | AAAAAGCGGATGAAATTTTT+GGG | + | chr8_1:79273354-79273373 | Msa1217060:CDS | 25.0% |
| !!! | TTTTCATCTTCAGTTCTAAG+AGG | + | chr8_1:79272113-79272132 | Msa1217060:CDS | 30.0% |
| CACTACCAAAAATGACAATT+TGG | + | chr8_1:79272312-79272331 | Msa1217060:intron | 30.0% | |
| !!! | AGACACCAAATTGTCATTTT+TGG | - | chr8_1:79272320-79272339 | None:intergenic | 30.0% |
| TGGAAAAACTAAGAAAGTTC+AGG | - | chr8_1:79272399-79272418 | None:intergenic | 30.0% | |
| ! | ATGTTTAATTTAGGTCACTC+TGG | + | chr8_1:79272744-79272763 | Msa1217060:intron | 30.0% |
| TCTTTATATGGTTGAAATGC+AGG | - | chr8_1:79272821-79272840 | None:intergenic | 30.0% | |
| GCATTTCAACCATATAAAGA+AGG | + | chr8_1:79272821-79272840 | Msa1217060:intron | 30.0% | |
| !!! | CAGTGAATGGCTAATTTTTT+TGG | + | chr8_1:79273099-79273118 | Msa1217060:intron | 30.0% |
| ! | TTTACTGAAAAAAGCATGGT+GGG | - | chr8_1:79273302-79273321 | None:intergenic | 30.0% |
| ! | ATTTACTGAAAAAAGCATGG+TGG | - | chr8_1:79273303-79273322 | None:intergenic | 30.0% |
| ! | CAAAAAGCGGATGAAATTTT+TGG | + | chr8_1:79273353-79273372 | Msa1217060:CDS | 30.0% |
| !!! | GTGTATAGATCTTTGTTTTC+AGG | - | chr8_1:79273380-79273399 | None:intergenic | 30.0% |
| AGATCTATACACTGTATTTG+AGG | + | chr8_1:79273388-79273407 | Msa1217060:CDS | 30.0% | |
| GATCTATACACTGTATTTGA+GGG | + | chr8_1:79273389-79273408 | Msa1217060:CDS | 30.0% | |
| !!! | TTTTCATCTTCAGTTCTAAG+AGG | + | chr8_1:79272113-79272132 | Msa1217060:CDS | 30.0% |
| CACTACCAAAAATGACAATT+TGG | + | chr8_1:79272312-79272331 | Msa1217060:intron | 30.0% | |
| !!! | AGACACCAAATTGTCATTTT+TGG | - | chr8_1:79272320-79272339 | None:intergenic | 30.0% |
| TGGAAAAACTAAGAAAGTTC+AGG | - | chr8_1:79272399-79272418 | None:intergenic | 30.0% | |
| ! | ATGTTTAATTTAGGTCACTC+TGG | + | chr8_1:79272744-79272763 | Msa1217060:intron | 30.0% |
| TCTTTATATGGTTGAAATGC+AGG | - | chr8_1:79272821-79272840 | None:intergenic | 30.0% | |
| GCATTTCAACCATATAAAGA+AGG | + | chr8_1:79272821-79272840 | Msa1217060:intron | 30.0% | |
| !!! | CAGTGAATGGCTAATTTTTT+TGG | + | chr8_1:79273099-79273118 | Msa1217060:intron | 30.0% |
| ! | TTTACTGAAAAAAGCATGGT+GGG | - | chr8_1:79273302-79273321 | None:intergenic | 30.0% |
| ! | ATTTACTGAAAAAAGCATGG+TGG | - | chr8_1:79273303-79273322 | None:intergenic | 30.0% |
| ! | CAAAAAGCGGATGAAATTTT+TGG | + | chr8_1:79273353-79273372 | Msa1217060:CDS | 30.0% |
| !!! | GTGTATAGATCTTTGTTTTC+AGG | - | chr8_1:79273380-79273399 | None:intergenic | 30.0% |
| AGATCTATACACTGTATTTG+AGG | + | chr8_1:79273388-79273407 | Msa1217060:CDS | 30.0% | |
| GATCTATACACTGTATTTGA+GGG | + | chr8_1:79273389-79273408 | Msa1217060:CDS | 30.0% | |
| ! | TTATATCTGCAGTGTTGGAA+TGG | - | chr8_1:79272419-79272438 | None:intergenic | 35.0% |
| GATGCTACAAGGAGATTATA+GGG | - | chr8_1:79272453-79272472 | None:intergenic | 35.0% | |
| TGATGCTACAAGGAGATTAT+AGG | - | chr8_1:79272454-79272473 | None:intergenic | 35.0% | |
| TCTTGAGGTTGAAAAGGAAA+TGG | - | chr8_1:79272580-79272599 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTCAACCTCAAG+AGG | + | chr8_1:79272579-79272598 | Msa1217060:CDS | 35.0% |
| !!! | GATGCGCCTATTTTTATTTG+AGG | - | chr8_1:79273067-79273086 | None:intergenic | 35.0% |
| ! | TTGGGCAAATTAGATTGGTT+AGG | + | chr8_1:79273118-79273137 | Msa1217060:intron | 35.0% |
| CAAATTGCTCGTAAGACAAA+CGG | - | chr8_1:79273186-79273205 | None:intergenic | 35.0% | |
| TGCATTCTTGGCAAATGTTA+AGG | + | chr8_1:79273207-79273226 | Msa1217060:CDS | 35.0% | |
| TACCTCTCGTGTTTGTTTAT+GGG | - | chr8_1:79273242-79273261 | None:intergenic | 35.0% | |
| TTACCTCTCGTGTTTGTTTA+TGG | - | chr8_1:79273243-79273262 | None:intergenic | 35.0% | |
| ! | TTATATCTGCAGTGTTGGAA+TGG | - | chr8_1:79272419-79272438 | None:intergenic | 35.0% |
| GATGCTACAAGGAGATTATA+GGG | - | chr8_1:79272453-79272472 | None:intergenic | 35.0% | |
| TGATGCTACAAGGAGATTAT+AGG | - | chr8_1:79272454-79272473 | None:intergenic | 35.0% | |
| TCTTGAGGTTGAAAAGGAAA+TGG | - | chr8_1:79272580-79272599 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTCAACCTCAAG+AGG | + | chr8_1:79272579-79272598 | Msa1217060:CDS | 35.0% |
| !!! | GATGCGCCTATTTTTATTTG+AGG | - | chr8_1:79273067-79273086 | None:intergenic | 35.0% |
| ! | TTGGGCAAATTAGATTGGTT+AGG | + | chr8_1:79273118-79273137 | Msa1217060:intron | 35.0% |
| CAAATTGCTCGTAAGACAAA+CGG | - | chr8_1:79273186-79273205 | None:intergenic | 35.0% | |
| TGCATTCTTGGCAAATGTTA+AGG | + | chr8_1:79273207-79273226 | Msa1217060:CDS | 35.0% | |
| TACCTCTCGTGTTTGTTTAT+GGG | - | chr8_1:79273242-79273261 | None:intergenic | 35.0% | |
| TTACCTCTCGTGTTTGTTTA+TGG | - | chr8_1:79273243-79273262 | None:intergenic | 35.0% | |
| AGATGAAAAACTGCAGCTGA+AGG | - | chr8_1:79272102-79272121 | None:intergenic | 40.0% | |
| GGCATGGAAGAAGATATAGA+CGG | - | chr8_1:79272176-79272195 | None:intergenic | 40.0% | |
| ! | TTTCCACCATCTGAAACATG+GGG | - | chr8_1:79272197-79272216 | None:intergenic | 40.0% |
| ! | GTTTCCACCATCTGAAACAT+GGG | - | chr8_1:79272198-79272217 | None:intergenic | 40.0% |
| ! | AGTTTCCACCATCTGAAACA+TGG | - | chr8_1:79272199-79272218 | None:intergenic | 40.0% |
| !!! | TGGTGGAAACTTTTTTGCTG+AGG | + | chr8_1:79272208-79272227 | Msa1217060:CDS | 40.0% |
| ! | AGGTCTTATATCTGCAGTGT+TGG | - | chr8_1:79272424-79272443 | None:intergenic | 40.0% |
| TGGTTCTTTGTGATGCTACA+AGG | - | chr8_1:79272464-79272483 | None:intergenic | 40.0% | |
| GATACTGATGCAGAAAGACT+AGG | - | chr8_1:79272516-79272535 | None:intergenic | 40.0% | |
| AAGGAAATGGAATGTCGTCT+TGG | - | chr8_1:79272567-79272586 | None:intergenic | 40.0% | |
| ! | TCTTCAGTGTTTTCCTCGAT+AGG | + | chr8_1:79272618-79272637 | Msa1217060:CDS | 40.0% |
| CAATGCAACAATAGCACAGT+AGG | - | chr8_1:79272701-79272720 | None:intergenic | 40.0% | |
| CTTCTTAACTTATGCGTCAC+AGG | + | chr8_1:79272878-79272897 | Msa1217060:intron | 40.0% | |
| CGTTTGTCTTACGAGCAATT+TGG | + | chr8_1:79273184-79273203 | Msa1217060:CDS | 40.0% | |
| TTCCCATAAACAAACACGAG+AGG | + | chr8_1:79273237-79273256 | Msa1217060:CDS | 40.0% | |
| AACACGAGAGGTAATTCATC+TGG | + | chr8_1:79273249-79273268 | Msa1217060:intron | 40.0% | |
| TAGACTGTATGCAAAACTGC+AGG | + | chr8_1:79273322-79273341 | Msa1217060:intron | 40.0% | |
| AGATGAAAAACTGCAGCTGA+AGG | - | chr8_1:79272102-79272121 | None:intergenic | 40.0% | |
| GGCATGGAAGAAGATATAGA+CGG | - | chr8_1:79272176-79272195 | None:intergenic | 40.0% | |
| ! | TTTCCACCATCTGAAACATG+GGG | - | chr8_1:79272197-79272216 | None:intergenic | 40.0% |
| ! | GTTTCCACCATCTGAAACAT+GGG | - | chr8_1:79272198-79272217 | None:intergenic | 40.0% |
| ! | AGTTTCCACCATCTGAAACA+TGG | - | chr8_1:79272199-79272218 | None:intergenic | 40.0% |
| !!! | TGGTGGAAACTTTTTTGCTG+AGG | + | chr8_1:79272208-79272227 | Msa1217060:CDS | 40.0% |
| ! | AGGTCTTATATCTGCAGTGT+TGG | - | chr8_1:79272424-79272443 | None:intergenic | 40.0% |
| TGGTTCTTTGTGATGCTACA+AGG | - | chr8_1:79272464-79272483 | None:intergenic | 40.0% | |
| GATACTGATGCAGAAAGACT+AGG | - | chr8_1:79272516-79272535 | None:intergenic | 40.0% | |
| AAGGAAATGGAATGTCGTCT+TGG | - | chr8_1:79272567-79272586 | None:intergenic | 40.0% | |
| ! | TCTTCAGTGTTTTCCTCGAT+AGG | + | chr8_1:79272618-79272637 | Msa1217060:CDS | 40.0% |
| CAATGCAACAATAGCACAGT+AGG | - | chr8_1:79272701-79272720 | None:intergenic | 40.0% | |
| CTTCTTAACTTATGCGTCAC+AGG | + | chr8_1:79272878-79272897 | Msa1217060:intron | 40.0% | |
| CGTTTGTCTTACGAGCAATT+TGG | + | chr8_1:79273184-79273203 | Msa1217060:CDS | 40.0% | |
| TTCCCATAAACAAACACGAG+AGG | + | chr8_1:79273237-79273256 | Msa1217060:CDS | 40.0% | |
| AACACGAGAGGTAATTCATC+TGG | + | chr8_1:79273249-79273268 | Msa1217060:intron | 40.0% | |
| TAGACTGTATGCAAAACTGC+AGG | + | chr8_1:79273322-79273341 | Msa1217060:intron | 40.0% | |
| GCTGAGGATCAAGAATCTGA+TGG | + | chr8_1:79272224-79272243 | Msa1217060:CDS | 45.0% | |
| ! | AGGAGATTATAGGGCACTCT+AGG | - | chr8_1:79272444-79272463 | None:intergenic | 45.0% |
| CATCACAAAGAACCACACCT+CGG | + | chr8_1:79272469-79272488 | Msa1217060:CDS | 45.0% | |
| TGATGCAGAAAGACTAGGAG+GGG | - | chr8_1:79272511-79272530 | None:intergenic | 45.0% | |
| CTGATGCAGAAAGACTAGGA+GGG | - | chr8_1:79272512-79272531 | None:intergenic | 45.0% | |
| ACTGATGCAGAAAGACTAGG+AGG | - | chr8_1:79272513-79272532 | None:intergenic | 45.0% | |
| ATAGGTCTGGATGTTCTCGT+TGG | - | chr8_1:79272540-79272559 | None:intergenic | 45.0% | |
| GAATGTCGTCTTGGAGACAT+AGG | - | chr8_1:79272558-79272577 | None:intergenic | 45.0% | |
| TGTGCCTCTTGAGGTTGAAA+AGG | - | chr8_1:79272586-79272605 | None:intergenic | 45.0% | |
| ! | TCAAGCTCTGACTCAGTAAC+AGG | + | chr8_1:79272654-79272673 | Msa1217060:CDS | 45.0% |
| TCAGTAACAGGATCACAAGC+TGG | + | chr8_1:79272666-79272685 | Msa1217060:CDS | 45.0% | |
| GCAACAATAGCACAGTAGGA+AGG | - | chr8_1:79272697-79272716 | None:intergenic | 45.0% | |
| ACTTCCACTACCAGAAACGT+CGG | + | chr8_1:79273000-79273019 | Msa1217060:intron | 45.0% | |
| GGTAGATGACACGATTTACG+AGG | + | chr8_1:79273021-79273040 | Msa1217060:intron | 45.0% | |
| AGATGACACGATTTACGAGG+CGG | + | chr8_1:79273024-79273043 | Msa1217060:intron | 45.0% | |
| !! | CGAGCAATTTGGTGCATTCT+TGG | + | chr8_1:79273195-79273214 | Msa1217060:CDS | 45.0% |
| GGAGAGGATAAGAGGAAACA+AGG | - | chr8_1:79273281-79273300 | None:intergenic | 45.0% | |
| ! | TGAAAAAAGCATGGTGGGAG+AGG | - | chr8_1:79273297-79273316 | None:intergenic | 45.0% |
| GCAGGTGACTCTACAAAAAG+CGG | + | chr8_1:79273340-79273359 | Msa1217060:intron | 45.0% | |
| GCTGAGGATCAAGAATCTGA+TGG | + | chr8_1:79272224-79272243 | Msa1217060:CDS | 45.0% | |
| ! | AGGAGATTATAGGGCACTCT+AGG | - | chr8_1:79272444-79272463 | None:intergenic | 45.0% |
| CATCACAAAGAACCACACCT+CGG | + | chr8_1:79272469-79272488 | Msa1217060:CDS | 45.0% | |
| TGATGCAGAAAGACTAGGAG+GGG | - | chr8_1:79272511-79272530 | None:intergenic | 45.0% | |
| CTGATGCAGAAAGACTAGGA+GGG | - | chr8_1:79272512-79272531 | None:intergenic | 45.0% | |
| ACTGATGCAGAAAGACTAGG+AGG | - | chr8_1:79272513-79272532 | None:intergenic | 45.0% | |
| ATAGGTCTGGATGTTCTCGT+TGG | - | chr8_1:79272540-79272559 | None:intergenic | 45.0% | |
| GAATGTCGTCTTGGAGACAT+AGG | - | chr8_1:79272558-79272577 | None:intergenic | 45.0% | |
| TGTGCCTCTTGAGGTTGAAA+AGG | - | chr8_1:79272586-79272605 | None:intergenic | 45.0% | |
| ! | TCAAGCTCTGACTCAGTAAC+AGG | + | chr8_1:79272654-79272673 | Msa1217060:CDS | 45.0% |
| TCAGTAACAGGATCACAAGC+TGG | + | chr8_1:79272666-79272685 | Msa1217060:CDS | 45.0% | |
| GCAACAATAGCACAGTAGGA+AGG | - | chr8_1:79272697-79272716 | None:intergenic | 45.0% | |
| ACTTCCACTACCAGAAACGT+CGG | + | chr8_1:79273000-79273019 | Msa1217060:intron | 45.0% | |
| GGTAGATGACACGATTTACG+AGG | + | chr8_1:79273021-79273040 | Msa1217060:intron | 45.0% | |
| AGATGACACGATTTACGAGG+CGG | + | chr8_1:79273024-79273043 | Msa1217060:intron | 45.0% | |
| !! | CGAGCAATTTGGTGCATTCT+TGG | + | chr8_1:79273195-79273214 | Msa1217060:CDS | 45.0% |
| GGAGAGGATAAGAGGAAACA+AGG | - | chr8_1:79273281-79273300 | None:intergenic | 45.0% | |
| ! | TGAAAAAAGCATGGTGGGAG+AGG | - | chr8_1:79273297-79273316 | None:intergenic | 45.0% |
| GCAGGTGACTCTACAAAAAG+CGG | + | chr8_1:79273340-79273359 | Msa1217060:intron | 45.0% | |
| TCCATGCCCCATGTTTCAGA+TGG | + | chr8_1:79272188-79272207 | Msa1217060:CDS | 50.0% | |
| ! | ACCATCTGAAACATGGGGCA+TGG | - | chr8_1:79272192-79272211 | None:intergenic | 50.0% |
| ATGCCCCATGTTTCAGATGG+TGG | + | chr8_1:79272191-79272210 | Msa1217060:CDS | 50.0% | |
| TCGTCTTGGAGACATAGGTC+TGG | - | chr8_1:79272553-79272572 | None:intergenic | 50.0% | |
| ! | GTGTTTTCCTCGATAGGTCG+CGG | + | chr8_1:79272624-79272643 | Msa1217060:CDS | 50.0% |
| TATTGAACCGCGACCTATCG+AGG | - | chr8_1:79272634-79272653 | None:intergenic | 50.0% | |
| TATGCGTCACAGGACGTACA+CGG | + | chr8_1:79272888-79272907 | Msa1217060:intron | 50.0% | |
| AGGAGTTCTTTCGCCAAGTC+AGG | + | chr8_1:79272921-79272940 | Msa1217060:CDS | 50.0% | |
| TTCTTTCGCCAAGTCAGGTG+AGG | + | chr8_1:79272926-79272945 | Msa1217060:intron | 50.0% | |
| AAAAGGGACCTCACCTGACT+TGG | - | chr8_1:79272937-79272956 | None:intergenic | 50.0% | |
| !! | TCTACCGACGTTTCTGGTAG+TGG | - | chr8_1:79273007-79273026 | None:intergenic | 50.0% |
| GTGTCATCTACCGACGTTTC+TGG | - | chr8_1:79273013-79273032 | None:intergenic | 50.0% | |
| TCCATGCCCCATGTTTCAGA+TGG | + | chr8_1:79272188-79272207 | Msa1217060:CDS | 50.0% | |
| ! | ACCATCTGAAACATGGGGCA+TGG | - | chr8_1:79272192-79272211 | None:intergenic | 50.0% |
| ATGCCCCATGTTTCAGATGG+TGG | + | chr8_1:79272191-79272210 | Msa1217060:CDS | 50.0% | |
| TCGTCTTGGAGACATAGGTC+TGG | - | chr8_1:79272553-79272572 | None:intergenic | 50.0% | |
| ! | GTGTTTTCCTCGATAGGTCG+CGG | + | chr8_1:79272624-79272643 | Msa1217060:CDS | 50.0% |
| TATTGAACCGCGACCTATCG+AGG | - | chr8_1:79272634-79272653 | None:intergenic | 50.0% | |
| TATGCGTCACAGGACGTACA+CGG | + | chr8_1:79272888-79272907 | Msa1217060:intron | 50.0% | |
| AGGAGTTCTTTCGCCAAGTC+AGG | + | chr8_1:79272921-79272940 | Msa1217060:CDS | 50.0% | |
| TTCTTTCGCCAAGTCAGGTG+AGG | + | chr8_1:79272926-79272945 | Msa1217060:intron | 50.0% | |
| AAAAGGGACCTCACCTGACT+TGG | - | chr8_1:79272937-79272956 | None:intergenic | 50.0% | |
| !! | TCTACCGACGTTTCTGGTAG+TGG | - | chr8_1:79273007-79273026 | None:intergenic | 50.0% |
| GTGTCATCTACCGACGTTTC+TGG | - | chr8_1:79273013-79273032 | None:intergenic | 50.0% | |
| AGTGGGAGTAATCCGAGGTG+TGG | - | chr8_1:79272484-79272503 | None:intergenic | 55.0% | |
| ACACCTCGGATTACTCCCAC+TGG | + | chr8_1:79272483-79272502 | Msa1217060:CDS | 55.0% | |
| GAACCAGTGGGAGTAATCCG+AGG | - | chr8_1:79272489-79272508 | None:intergenic | 55.0% | |
| AGACTAGGAGGGGAACCAGT+GGG | - | chr8_1:79272501-79272520 | None:intergenic | 55.0% | |
| AAGACTAGGAGGGGAACCAG+TGG | - | chr8_1:79272502-79272521 | None:intergenic | 55.0% | |
| GTCGTCATGTGTGCCTCTTG+AGG | - | chr8_1:79272595-79272614 | None:intergenic | 55.0% | |
| ! | CAAGAGGCACACATGACGAC+AGG | + | chr8_1:79272595-79272614 | Msa1217060:CDS | 55.0% |
| ATGCGTCACAGGACGTACAC+GGG | + | chr8_1:79272889-79272908 | Msa1217060:intron | 55.0% | |
| ! | GCATGGTGGGAGAGGATAAG+AGG | - | chr8_1:79273289-79273308 | None:intergenic | 55.0% |
| AGTGGGAGTAATCCGAGGTG+TGG | - | chr8_1:79272484-79272503 | None:intergenic | 55.0% | |
| ACACCTCGGATTACTCCCAC+TGG | + | chr8_1:79272483-79272502 | Msa1217060:CDS | 55.0% | |
| GAACCAGTGGGAGTAATCCG+AGG | - | chr8_1:79272489-79272508 | None:intergenic | 55.0% | |
| AGACTAGGAGGGGAACCAGT+GGG | - | chr8_1:79272501-79272520 | None:intergenic | 55.0% | |
| AAGACTAGGAGGGGAACCAG+TGG | - | chr8_1:79272502-79272521 | None:intergenic | 55.0% | |
| GTCGTCATGTGTGCCTCTTG+AGG | - | chr8_1:79272595-79272614 | None:intergenic | 55.0% | |
| ! | CAAGAGGCACACATGACGAC+AGG | + | chr8_1:79272595-79272614 | Msa1217060:CDS | 55.0% |
| ATGCGTCACAGGACGTACAC+GGG | + | chr8_1:79272889-79272908 | Msa1217060:intron | 55.0% | |
| ! | GCATGGTGGGAGAGGATAAG+AGG | - | chr8_1:79273289-79273308 | None:intergenic | 55.0% |
| ACAGGACGTACACGGGTGGA+TGG | + | chr8_1:79272896-79272915 | Msa1217060:intron | 60.0% | |
| CAGGACGTACACGGGTGGAT+GGG | + | chr8_1:79272897-79272916 | Msa1217060:intron | 60.0% | |
| ACGTACACGGGTGGATGGGA+AGG | + | chr8_1:79272901-79272920 | Msa1217060:CDS | 60.0% | |
| ACAGGACGTACACGGGTGGA+TGG | + | chr8_1:79272896-79272915 | Msa1217060:intron | 60.0% | |
| CAGGACGTACACGGGTGGAT+GGG | + | chr8_1:79272897-79272916 | Msa1217060:intron | 60.0% | |
| ACGTACACGGGTGGATGGGA+AGG | + | chr8_1:79272901-79272920 | Msa1217060:CDS | 60.0% | |
| CGTCACAGGACGTACACGGG+TGG | + | chr8_1:79272892-79272911 | Msa1217060:intron | 65.0% | |
| CGTCACAGGACGTACACGGG+TGG | + | chr8_1:79272892-79272911 | Msa1217060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 79272092 | 79273436 | 79272092 | ID=Msa1217060;Name=Msa1217060 |
| chr8_1 | mRNA | 79272092 | 79273436 | 79272092 | ID=Msa1217060-mRNA-1;Parent=Msa1217060;Name=Msa1217060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|5|0|207 |
| chr8_1 | exon | 79272092 | 79272245 | 79272092 | ID=Msa1217060-mRNA-1:exon:27473;Parent=Msa1217060-mRNA-1 |
| chr8_1 | exon | 79272433 | 79272687 | 79272433 | ID=Msa1217060-mRNA-1:exon:27474;Parent=Msa1217060-mRNA-1 |
| chr8_1 | exon | 79272900 | 79272942 | 79272900 | ID=Msa1217060-mRNA-1:exon:27475;Parent=Msa1217060-mRNA-1 |
| chr8_1 | exon | 79273180 | 79273258 | 79273180 | ID=Msa1217060-mRNA-1:exon:27476;Parent=Msa1217060-mRNA-1 |
| chr8_1 | exon | 79273344 | 79273436 | 79273344 | ID=Msa1217060-mRNA-1:exon:27477;Parent=Msa1217060-mRNA-1 |
| chr8_1 | CDS | 79272092 | 79272245 | 79272092 | ID=Msa1217060-mRNA-1:cds;Parent=Msa1217060-mRNA-1 |
| chr8_1 | CDS | 79272433 | 79272687 | 79272433 | ID=Msa1217060-mRNA-1:cds;Parent=Msa1217060-mRNA-1 |
| chr8_1 | CDS | 79272900 | 79272942 | 79272900 | ID=Msa1217060-mRNA-1:cds;Parent=Msa1217060-mRNA-1 |
| chr8_1 | CDS | 79273180 | 79273258 | 79273180 | ID=Msa1217060-mRNA-1:cds;Parent=Msa1217060-mRNA-1 |
| chr8_1 | CDS | 79273344 | 79273436 | 79273344 | ID=Msa1217060-mRNA-1:cds;Parent=Msa1217060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
