Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216740 | sp|Q93W28|Y4554_ARATH | 59.078 | 347 | 117 | 5 | 2 | 346 | 14 | 337 | 1.16e-126 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216740 | G7JHX1 | 95.954 | 346 | 12 | 1 | 1 | 346 | 1 | 344 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0363050 | Msa1216740 | -0.803699 | 3.077535e-49 | -8.615850e-47 |
| Msa1216740 | Msa1216940 | 0.896636 | 3.049907e-76 | -8.615850e-47 |
| Msa1216740 | Msa1217060 | 0.831093 | 2.029224e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216740 | MtrunA17_Chr4g0066521 | 95.954 | 346 | 12 | 1 | 1 | 346 | 1 | 344 | 0.0 | 662 |
| Msa1216740 | MtrunA17_Chr2g0286841 | 63.662 | 355 | 106 | 4 | 1 | 346 | 2 | 342 | 4.03e-140 | 400 |
| Msa1216740 | MtrunA17_Chr8g0358391 | 42.693 | 349 | 163 | 8 | 7 | 345 | 20 | 341 | 1.67e-69 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1216740 | AT4G15545.1 | 59.078 | 347 | 117 | 5 | 2 | 346 | 14 | 337 | 1.18e-127 | 369 |
| Msa1216740 | AT1G16520.1 | 40.286 | 350 | 168 | 6 | 8 | 346 | 6 | 325 | 5.97e-68 | 216 |
| Msa1216740 | AT1G56080.1 | 38.012 | 342 | 174 | 7 | 3 | 342 | 2 | 307 | 3.63e-65 | 209 |
Find 99 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCTCTCGTGTTTGTTTA+TGG | 0.149645 | 8_1:-78709686 | None:intergenic |
| ACTTCATATTAAAATGTTAT+TGG | 0.176959 | 8_1:-78710040 | None:intergenic |
| CGAGCAATTTGGTGCATTCT+TGG | 0.245683 | 8_1:+78709641 | Msa1216740:CDS |
| ATTGGTTCATTCAAATTTAC+AGG | 0.249309 | 8_1:-78710022 | None:intergenic |
| TACCTCTCGTGTTTGTTTAT+GGG | 0.264711 | 8_1:-78709685 | None:intergenic |
| TGATGCTACAAGGAGATTAT+AGG | 0.290719 | 8_1:-78708898 | None:intergenic |
| GACGAGATTATCGGCGGTTT+GGG | 0.307200 | 8_1:-78706295 | None:intergenic |
| ATTTACAGGCTTTCATGTTC+AGG | 0.310673 | 8_1:-78710008 | None:intergenic |
| TGAGATGTGAAATGTTAATA+TGG | 0.315509 | 8_1:-78705923 | None:intergenic |
| TTCATCTTTCTCGGCGATCT+TGG | 0.340173 | 8_1:-78706223 | None:intergenic |
| CGTTTGTCTTACGAGCAATT+TGG | 0.341040 | 8_1:+78709630 | Msa1216740:CDS |
| TTGACTTCTACGTCTCAGTA+TGG | 0.354955 | 8_1:+78707307 | Msa1216740:CDS |
| GGACGAGATTATCGGCGGTT+TGG | 0.357937 | 8_1:-78706296 | None:intergenic |
| GGCGATGAGTTCATCTTTCT+CGG | 0.359529 | 8_1:-78706232 | None:intergenic |
| GACGCTTATGCAATCACTTC+AGG | 0.388110 | 8_1:+78706665 | Msa1216740:CDS |
| TGCATTCTTGGCAAATGTTA+AGG | 0.388169 | 8_1:+78709653 | Msa1216740:CDS |
| GATTATCGGCGGTTTGGGAT+AGG | 0.391869 | 8_1:-78706290 | None:intergenic |
| TATTTGGTAAAAGATTATTC+TGG | 0.397402 | 8_1:-78705975 | None:intergenic |
| TCAAGCTCTGACTCAGTAAC+AGG | 0.399934 | 8_1:+78709101 | Msa1216740:CDS |
| AGGAAAGATGACGGCAGAAT+CGG | 0.413573 | 8_1:+78706053 | Msa1216740:exon |
| AGGAGTTCTTTCGCCAAGTC+AGG | 0.428311 | 8_1:+78709367 | Msa1216740:CDS |
| GATGCTACAAGGAGATTATA+GGG | 0.429794 | 8_1:-78708897 | None:intergenic |
| ATTATCGGCGGTTTGGGATA+GGG | 0.431978 | 8_1:-78706289 | None:intergenic |
| TCTTCATTTGATCGTGGGGT+GGG | 0.433526 | 8_1:-78705879 | None:intergenic |
| GTCCATTGATGTTGTGCTTA+GGG | 0.444654 | 8_1:+78709874 | Msa1216740:exon |
| TCTTGAGGTTGAAAAGGAAA+TGG | 0.452117 | 8_1:-78709024 | None:intergenic |
| TGTCCATTGATGTTGTGCTT+AGG | 0.452924 | 8_1:+78709873 | Msa1216740:exon |
| GATCTATACACTGTATTTGA+GGG | 0.453264 | 8_1:+78709835 | Msa1216740:CDS |
| CTTCATTTGATCGTGGGGTG+GGG | 0.459918 | 8_1:-78705878 | None:intergenic |
| ACTTCAGGAGGATGAGGATA+AGG | 0.472683 | 8_1:+78706680 | Msa1216740:CDS |
| TGTATTCTAGCAATAATGTC+TGG | 0.474687 | 8_1:-78707271 | None:intergenic |
| AGATCTATACACTGTATTTG+AGG | 0.475765 | 8_1:+78709834 | Msa1216740:CDS |
| GGAAAGATGACGGCAGAATC+GGG | 0.475783 | 8_1:+78706054 | Msa1216740:exon |
| TCCATGCCCCATGTTTCAGA+TGG | 0.476104 | 8_1:+78708635 | Msa1216740:CDS |
| TTCTTCATTTGATCGTGGGG+TGG | 0.479252 | 8_1:-78705880 | None:intergenic |
| TAGCACTTGCACGACATCCT+CGG | 0.481046 | 8_1:-78706097 | None:intergenic |
| CTCTGCACGGACGAGATTAT+CGG | 0.482210 | 8_1:-78706304 | None:intergenic |
| TTCTGTTCTTCATTTGATCG+TGG | 0.484819 | 8_1:-78705885 | None:intergenic |
| TGCCCTAAGCACAACATCAA+TGG | 0.487002 | 8_1:-78709876 | None:intergenic |
| TCTGTTCTTCATTTGATCGT+GGG | 0.491511 | 8_1:-78705884 | None:intergenic |
| AAAAGGGACCTCACCTGACT+TGG | 0.492655 | 8_1:-78709380 | None:intergenic |
| CGCCCTTGAATTAGAATCAT+CGG | 0.493641 | 8_1:+78706191 | Msa1216740:CDS |
| GTTCCGATGATTCTAATTCA+AGG | 0.497436 | 8_1:-78706194 | None:intergenic |
| AGCACTTGCACGACATCCTC+GGG | 0.510607 | 8_1:-78706096 | None:intergenic |
| GTTTCCACCATCTGAAACAT+GGG | 0.510696 | 8_1:-78708642 | None:intergenic |
| TCGTCTTGGAGACATAGGTC+TGG | 0.521585 | 8_1:-78708997 | None:intergenic |
| AGGAGATTATAGGGCACTCT+AGG | 0.523644 | 8_1:-78708888 | None:intergenic |
| ATGTGAAATGTTAATATGGC+TGG | 0.524191 | 8_1:-78705919 | None:intergenic |
| CGTCCGTGCAGAGCAAGATA+AGG | 0.525940 | 8_1:+78706314 | Msa1216740:CDS |
| ATGCCCCATGTTTCAGATGG+TGG | 0.526341 | 8_1:+78708638 | Msa1216740:CDS |
| TGGTTCTTTGTGATGCTACA+AGG | 0.526545 | 8_1:-78708908 | None:intergenic |
| ACAGGACGTACACGGGTGGA+TGG | 0.538809 | 8_1:+78709342 | Msa1216740:intron |
| GCAATCACTTCAGGAGGATG+AGG | 0.539527 | 8_1:+78706674 | Msa1216740:CDS |
| AGTTTCCACCATCTGAAACA+TGG | 0.543260 | 8_1:-78708643 | None:intergenic |
| AAGGAAATGGAATGTCGTCT+TGG | 0.543959 | 8_1:-78709011 | None:intergenic |
| AAAGTGGGAGGAAGGAACAA+AGG | 0.550445 | 8_1:+78706033 | Msa1216740:five_prime_UTR |
| TGTGCCTCTTGAGGTTGAAA+AGG | 0.551240 | 8_1:-78709030 | None:intergenic |
| ACCATCTGAAACATGGGGCA+TGG | 0.554223 | 8_1:-78708636 | None:intergenic |
| CAAATTGCTCGTAAGACAAA+CGG | 0.554295 | 8_1:-78709629 | None:intergenic |
| TATTGAACCGCGACCTATCG+AGG | 0.558011 | 8_1:-78709078 | None:intergenic |
| CAGGACGTACACGGGTGGAT+GGG | 0.561363 | 8_1:+78709343 | Msa1216740:intron |
| ACGTACACGGGTGGATGGGA+AGG | 0.564243 | 8_1:+78709347 | Msa1216740:CDS |
| TATGCGTCACAGGACGTACA+CGG | 0.572220 | 8_1:+78709334 | Msa1216740:intron |
| CTCAAGCTGAGACTGAAGTT+CGG | 0.572828 | 8_1:-78706253 | None:intergenic |
| GCTGAGGATCAAGAATCTGA+TGG | 0.577192 | 8_1:+78708671 | Msa1216740:CDS |
| TTCCGATGATTCTAATTCAA+GGG | 0.577493 | 8_1:-78706193 | None:intergenic |
| ATAGGTCTGGATGTTCTCGT+TGG | 0.582395 | 8_1:-78708984 | None:intergenic |
| GCTACATCGAGTTGTTCAAA+TGG | 0.590110 | 8_1:-78706129 | None:intergenic |
| CTGTTCTTCATTTGATCGTG+GGG | 0.594320 | 8_1:-78705883 | None:intergenic |
| GAATGTCGTCTTGGAGACAT+AGG | 0.596807 | 8_1:-78709002 | None:intergenic |
| TTGGGATAGGGAAACGTCGA+GGG | 0.597490 | 8_1:-78706277 | None:intergenic |
| GATACTGATGCAGAAAGACT+AGG | 0.603214 | 8_1:-78708960 | None:intergenic |
| ACACCTCGGATTACTCCCAC+TGG | 0.606495 | 8_1:+78708930 | Msa1216740:CDS |
| AAGACTAGGAGGGGAACCAG+TGG | 0.607634 | 8_1:-78708946 | None:intergenic |
| TCAGTAACAGGATCACAAGC+TGG | 0.613501 | 8_1:+78709113 | Msa1216740:CDS |
| GAACCTTATCTTGCTCTGCA+CGG | 0.614244 | 8_1:-78706317 | None:intergenic |
| TGATGCAGAAAGACTAGGAG+GGG | 0.614363 | 8_1:-78708955 | None:intergenic |
| AAGGAACAAAGGAAAGATGA+CGG | 0.615629 | 8_1:+78706044 | Msa1216740:exon |
| AGACTAGGAGGGGAACCAGT+GGG | 0.617410 | 8_1:-78708945 | None:intergenic |
| AGTTGTTCAAATGGATCTGA+CGG | 0.619106 | 8_1:-78706120 | None:intergenic |
| CAAGAGGCACACATGACGAT+AGG | 0.627702 | 8_1:+78709042 | Msa1216740:CDS |
| ATCGTCATGTGTGCCTCTTG+AGG | 0.632416 | 8_1:-78709039 | None:intergenic |
| ACTGATGCAGAAAGACTAGG+AGG | 0.641115 | 8_1:-78708957 | None:intergenic |
| GACACGTGTCGATAAAGCAA+TGG | 0.644138 | 8_1:-78706166 | None:intergenic |
| ACTTAATCGAGATGTCTCCA+AGG | 0.645694 | 8_1:+78706470 | Msa1216740:CDS |
| ACTTCTACGTCTCAGTATGG+AGG | 0.664636 | 8_1:+78707310 | Msa1216740:CDS |
| AGTGGGAGTAATCCGAGGTG+TGG | 0.667663 | 8_1:-78708928 | None:intergenic |
| TTCCCATAAACAAACACGAG+AGG | 0.669860 | 8_1:+78709683 | Msa1216740:CDS |
| TTTGGGATAGGGAAACGTCG+AGG | 0.670982 | 8_1:-78706278 | None:intergenic |
| TTTGAACTTCGATCTTCCCG+AGG | 0.671548 | 8_1:+78706080 | Msa1216740:CDS |
| ATGCGTCACAGGACGTACAC+GGG | 0.672771 | 8_1:+78709335 | Msa1216740:intron |
| TGCACGGACGAGATTATCGG+CGG | 0.672863 | 8_1:-78706301 | None:intergenic |
| GCTTATGCAATCACTTCAGG+AGG | 0.677082 | 8_1:+78706668 | Msa1216740:CDS |
| CTGATGCAGAAAGACTAGGA+GGG | 0.680063 | 8_1:-78708956 | None:intergenic |
| GAACCAGTGGGAGTAATCCG+AGG | 0.680105 | 8_1:-78708933 | None:intergenic |
| TTTCCACCATCTGAAACATG+GGG | 0.706290 | 8_1:-78708641 | None:intergenic |
| CATCACAAAGAACCACACCT+CGG | 0.720123 | 8_1:+78708916 | Msa1216740:CDS |
| AAGATGACGGCAGAATCGGG+AGG | 0.739024 | 8_1:+78706057 | Msa1216740:exon |
| GGCATGGAAGAAGATATAGA+CGG | 0.756774 | 8_1:-78708620 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATCATAGTAAAA+CGG | - | chr8_1:78706497-78706516 | None:intergenic | 10.0% |
| !! | TTATCAATATAACTATATAA+AGG | + | chr8_1:78707560-78707579 | Msa1216740:intron | 10.0% |
| !! | TTATTGAAGAAAACAAAAAT+GGG | - | chr8_1:78706542-78706561 | None:intergenic | 15.0% |
| !! | TTTATTGAAGAAAACAAAAA+TGG | - | chr8_1:78706543-78706562 | None:intergenic | 15.0% |
| !!! | ATTCTTTATTTAATGCTTTT+TGG | + | chr8_1:78706730-78706749 | Msa1216740:intron | 15.0% |
| !! | TAAACTATGAAATTGATTAA+AGG | - | chr8_1:78707134-78707153 | None:intergenic | 15.0% |
| !! | TTTGTTGAAAATCATAATAA+TGG | + | chr8_1:78707685-78707704 | Msa1216740:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | - | chr8_1:78708022-78708041 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8_1:78708149-78708168 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8_1:78708148-78708167 | Msa1216740:intron | 15.0% |
| !! | ACTTCATATTAAAATGTTAT+TGG | - | chr8_1:78710043-78710062 | None:intergenic | 15.0% |
| !!! | TCGCTATTTCTTTTTTTATT+TGG | - | chr8_1:78705954-78705973 | None:intergenic | 20.0% |
| !! | TATTTGGTAAAAGATTATTC+TGG | - | chr8_1:78705978-78705997 | None:intergenic | 20.0% |
| !! | GAAATAAAAAAAGAAAGAGA+AGG | + | chr8_1:78706008-78706027 | Msa1216740:five_prime_UTR | 20.0% |
| !! | ATTAAATGCCAATACAAAAA+TGG | - | chr8_1:78706800-78706819 | None:intergenic | 20.0% |
| !!! | ATTGACTTGTTTTTGTTTAT+TGG | - | chr8_1:78707102-78707121 | None:intergenic | 20.0% |
| !! | TAATCAATTTCATAGTTTAC+TGG | + | chr8_1:78707135-78707154 | Msa1216740:intron | 20.0% |
| !!! | GTATTTCCTTATTTAACTTT+TGG | + | chr8_1:78707217-78707236 | Msa1216740:intron | 20.0% |
| !! | AGAATTTGAAGAAGATATAT+TGG | - | chr8_1:78707525-78707544 | None:intergenic | 20.0% |
| !! | TCAACAAATAGAAACATAAT+AGG | - | chr8_1:78707673-78707692 | None:intergenic | 20.0% |
| !! | ATGATAATCCATAAATTACT+TGG | + | chr8_1:78707710-78707729 | Msa1216740:intron | 20.0% |
| !! | TGATAATCCATAAATTACTT+GGG | + | chr8_1:78707711-78707730 | Msa1216740:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8_1:78708062-78708081 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8_1:78708139-78708158 | Msa1216740:intron | 20.0% |
| !! | AATAAGTTACTTGTATATGA+TGG | + | chr8_1:78708370-78708389 | Msa1216740:intron | 20.0% |
| !! | TGTAATATGTTTCATATATG+AGG | + | chr8_1:78708696-78708715 | Msa1216740:intron | 20.0% |
| !!! | ATTATAGTTGTTCATTTTTC+AGG | - | chr8_1:78708810-78708829 | None:intergenic | 20.0% |
| !!! | CATCTAGAAATGTTTAATTT+AGG | + | chr8_1:78709181-78709200 | Msa1216740:intron | 20.0% |
| !! | TAATGAAAACCTTCTTTATA+TGG | - | chr8_1:78709279-78709298 | None:intergenic | 20.0% |
| !!! | ATATAAAGAAGGTTTTCATT+AGG | + | chr8_1:78709278-78709297 | Msa1216740:intron | 20.0% |
| !! | TTCAAAATTTGAAGACAAAA+GGG | - | chr8_1:78709399-78709418 | None:intergenic | 20.0% |
| !! | TTTCAAAATTTGAAGACAAA+AGG | - | chr8_1:78709400-78709419 | None:intergenic | 20.0% |
| !!! | TTATTCTCTATTTTATCTCA+TGG | + | chr8_1:78709590-78709609 | Msa1216740:intron | 20.0% |
| !! | TATACAATGAAGAAAAAATG+AGG | - | chr8_1:78709952-78709971 | None:intergenic | 20.0% |
| !!! | GGAAAAAATGTTTTATTACA+CGG | - | chr8_1:78709990-78710009 | None:intergenic | 20.0% |
| ! | TGAGATGTGAAATGTTAATA+TGG | - | chr8_1:78705926-78705945 | None:intergenic | 25.0% |
| ! | TTAAGCAAATTCTCCTAAAA+TGG | - | chr8_1:78706417-78706436 | None:intergenic | 25.0% |
| !!! | ATTTTAGGAGAATTTGCTTA+AGG | + | chr8_1:78706416-78706435 | Msa1216740:intron | 25.0% |
| !!! | TACTACTACCATTTTTGTAT+TGG | + | chr8_1:78706789-78706808 | Msa1216740:intron | 25.0% |
| ! | TTAAGCTATTTATCCAAACA+AGG | - | chr8_1:78706884-78706903 | None:intergenic | 25.0% |
| ! | AATAAGATGAAAACAGCTTA+TGG | + | chr8_1:78707017-78707036 | Msa1216740:intron | 25.0% |
| ! | ATAAGATGAAAACAGCTTAT+GGG | + | chr8_1:78707018-78707037 | Msa1216740:intron | 25.0% |
| ! | GAGGTTATATAAACAACTTA+TGG | - | chr8_1:78707048-78707067 | None:intergenic | 25.0% |
| !!! | GTGTTTGACTTGATTTTAAT+AGG | + | chr8_1:78707173-78707192 | Msa1216740:intron | 25.0% |
| ! | GAAAAGCCAAAAGTTAAATA+AGG | - | chr8_1:78707226-78707245 | None:intergenic | 25.0% |
| ! | AAACAAACCCAAGTAATTTA+TGG | - | chr8_1:78707721-78707740 | None:intergenic | 25.0% |
| ! | AATTAATTATTTCCAGTGCT+GGG | + | chr8_1:78707811-78707830 | Msa1216740:intron | 25.0% |
| !! | TTGTTGTTAAAGAAAATGAG+AGG | + | chr8_1:78707893-78707912 | Msa1216740:intron | 25.0% |
| ! | ATTATTCTCTACAAGAAATG+TGG | - | chr8_1:78707937-78707956 | None:intergenic | 25.0% |
| !!! | TCTAGTTTTGTCATTAATGT+TGG | + | chr8_1:78708284-78708303 | Msa1216740:intron | 25.0% |
| !!! | ATGCAATTATTTTTGCCAAT+CGG | + | chr8_1:78708342-78708361 | Msa1216740:intron | 25.0% |
| ! | TTGCATCCTTATGAAAAATT+AGG | + | chr8_1:78709229-78709248 | Msa1216740:intron | 25.0% |
| !! | TAAGCACCTAATTTTTCATA+AGG | - | chr8_1:78709238-78709257 | None:intergenic | 25.0% |
| ! | TTAGCTCCTCAAATAAAAAT+AGG | + | chr8_1:78709504-78709523 | Msa1216740:intron | 25.0% |
| !! | CTTTTACATATTACAGTGAA+TGG | + | chr8_1:78709532-78709551 | Msa1216740:intron | 25.0% |
| !!! | AGTGAATGGCTAATTTTTTT+GGG | + | chr8_1:78709546-78709565 | Msa1216740:intron | 25.0% |
| !!! | TTTTTTTGGGCAAATTAGAT+TGG | + | chr8_1:78709559-78709578 | Msa1216740:intron | 25.0% |
| ! | ATCTCATGGTTGTTAATATT+AGG | + | chr8_1:78709604-78709623 | Msa1216740:intron | 25.0% |
| ! | TCTATTTACTGAAAAAAGCA+TGG | - | chr8_1:78709752-78709771 | None:intergenic | 25.0% |
| !! | AAAAAGCGGATGAAATTTTT+GGG | + | chr8_1:78709800-78709819 | Msa1216740:CDS | 25.0% |
| ! | GAAAAAATGAGGTTATTATG+AGG | - | chr8_1:78709941-78709960 | None:intergenic | 25.0% |
| !! | ATTGGTTCATTCAAATTTAC+AGG | - | chr8_1:78710025-78710044 | None:intergenic | 25.0% |
| ATGTGAAATGTTAATATGGC+TGG | - | chr8_1:78705922-78705941 | None:intergenic | 30.0% | |
| AAAGAAAGAGAAGGAAAAAG+TGG | + | chr8_1:78706017-78706036 | Msa1216740:five_prime_UTR | 30.0% | |
| AAGAAAGAGAAGGAAAAAGT+GGG | + | chr8_1:78706018-78706037 | Msa1216740:five_prime_UTR | 30.0% | |
| TTCCGATGATTCTAATTCAA+GGG | - | chr8_1:78706196-78706215 | None:intergenic | 30.0% | |
| !! | TTAGTACTATTTGTTTTCCG+TGG | + | chr8_1:78706372-78706391 | Msa1216740:intron | 30.0% |
| AGTTAAATAAGGAAATACCC+TGG | - | chr8_1:78707215-78707234 | None:intergenic | 30.0% | |
| !!! | ATTTAACTTTTGGCTTTTCC+TGG | + | chr8_1:78707227-78707246 | Msa1216740:intron | 30.0% |
| ! | TTTTCCTGGTATTTGACATA+GGG | + | chr8_1:78707241-78707260 | Msa1216740:intron | 30.0% |
| TGTATTCTAGCAATAATGTC+TGG | - | chr8_1:78707274-78707293 | None:intergenic | 30.0% | |
| ACTCAAACAGAAATGTAATG+TGG | - | chr8_1:78707376-78707395 | None:intergenic | 30.0% | |
| TTACATTTCTGTTTGAGTCT+TGG | + | chr8_1:78707378-78707397 | Msa1216740:intron | 30.0% | |
| ! | TCATTTATGCAATTAGCTTC+AGG | + | chr8_1:78707448-78707467 | Msa1216740:intron | 30.0% |
| ! | CATTTATGCAATTAGCTTCA+GGG | + | chr8_1:78707449-78707468 | Msa1216740:intron | 30.0% |
| GAATTAATTATTTCCAGTGC+TGG | + | chr8_1:78707810-78707829 | Msa1216740:intron | 30.0% | |
| ATTAATTATTTCCAGTGCTG+GGG | + | chr8_1:78707812-78707831 | Msa1216740:intron | 30.0% | |
| ! | TTCAAAATGAGTGTCGTATT+AGG | - | chr8_1:78708230-78708249 | None:intergenic | 30.0% |
| !! | ATACGACACTCATTTTGAAA+CGG | + | chr8_1:78708231-78708250 | Msa1216740:intron | 30.0% |
| ! | GAGGGAGTATATAAATTCTT+TGG | + | chr8_1:78708253-78708272 | Msa1216740:intron | 30.0% |
| GTAACTTATTAATGTCCGAT+TGG | - | chr8_1:78708360-78708379 | None:intergenic | 30.0% | |
| TTAGTTTCTGTTTACAAGAG+CGG | + | chr8_1:78708415-78708434 | Msa1216740:intron | 30.0% | |
| !!! | TTTTCATCTTCAGTTCTAAG+AGG | + | chr8_1:78708560-78708579 | Msa1216740:intron | 30.0% |
| CACTACCAAAAATGACAATT+TGG | + | chr8_1:78708759-78708778 | Msa1216740:intron | 30.0% | |
| !!! | AGACACCAAATTGTCATTTT+TGG | - | chr8_1:78708767-78708786 | None:intergenic | 30.0% |
| TGGAAAAACTAAGAAAGTTC+AGG | - | chr8_1:78708846-78708865 | None:intergenic | 30.0% | |
| ! | ATGTTTAATTTAGGTCACTC+TGG | + | chr8_1:78709190-78709209 | Msa1216740:intron | 30.0% |
| TCTTTATATGGTTGAAATGC+AGG | - | chr8_1:78709267-78709286 | None:intergenic | 30.0% | |
| GCATTTCAACCATATAAAGA+AGG | + | chr8_1:78709267-78709286 | Msa1216740:intron | 30.0% | |
| !!! | CAGTGAATGGCTAATTTTTT+TGG | + | chr8_1:78709545-78709564 | Msa1216740:intron | 30.0% |
| ! | TTTACTGAAAAAAGCATGGT+GGG | - | chr8_1:78709748-78709767 | None:intergenic | 30.0% |
| ! | ATTTACTGAAAAAAGCATGG+TGG | - | chr8_1:78709749-78709768 | None:intergenic | 30.0% |
| ! | CAAAAAGCGGATGAAATTTT+TGG | + | chr8_1:78709799-78709818 | Msa1216740:CDS | 30.0% |
| !!! | GTGTATAGATCTTTGTTTTC+AGG | - | chr8_1:78709826-78709845 | None:intergenic | 30.0% |
| AGATCTATACACTGTATTTG+AGG | + | chr8_1:78709834-78709853 | Msa1216740:CDS | 30.0% | |
| GATCTATACACTGTATTTGA+GGG | + | chr8_1:78709835-78709854 | Msa1216740:CDS | 30.0% | |
| TCTGTTCTTCATTTGATCGT+GGG | - | chr8_1:78705887-78705906 | None:intergenic | 35.0% | |
| TTCTGTTCTTCATTTGATCG+TGG | - | chr8_1:78705888-78705907 | None:intergenic | 35.0% | |
| AAGGAACAAAGGAAAGATGA+CGG | + | chr8_1:78706044-78706063 | Msa1216740:exon | 35.0% | |
| AGTTGTTCAAATGGATCTGA+CGG | - | chr8_1:78706123-78706142 | None:intergenic | 35.0% | |
| GTTCCGATGATTCTAATTCA+AGG | - | chr8_1:78706197-78706216 | None:intergenic | 35.0% | |
| ! | ATACGAAACAGAAAGAGTGT+GGG | - | chr8_1:78706348-78706367 | None:intergenic | 35.0% |
| AATACGAAACAGAAAGAGTG+TGG | - | chr8_1:78706349-78706368 | None:intergenic | 35.0% | |
| ! | TGAGCTTGATACTCCATTTT+AGG | + | chr8_1:78706401-78706420 | Msa1216740:intron | 35.0% |
| AATCATAGTAAAACGGACCT+TGG | - | chr8_1:78706490-78706509 | None:intergenic | 35.0% | |
| GGCATTTAATGAAGAGAGTT+TGG | + | chr8_1:78706810-78706829 | Msa1216740:intron | 35.0% | |
| TTTGCCTCTGAGTTAAATAC+CGG | + | chr8_1:78706836-78706855 | Msa1216740:intron | 35.0% | |
| AAGTCATCTACTGTATTTGC+CGG | - | chr8_1:78706858-78706877 | None:intergenic | 35.0% | |
| TAGATGACTTAGTCCTTGTT+TGG | + | chr8_1:78706868-78706887 | Msa1216740:intron | 35.0% | |
| AACCTATCTTAGAGAGCTTA+TGG | + | chr8_1:78706993-78707012 | Msa1216740:intron | 35.0% | |
| !! | TTCCATAAGCTCTCTAAGAT+AGG | - | chr8_1:78706998-78707017 | None:intergenic | 35.0% |
| ! | TTACTGGATTATGCTGCTTA+TGG | + | chr8_1:78707151-78707170 | Msa1216740:intron | 35.0% |
| ! | GCTAATGCTATTTGTTTCCA+GGG | + | chr8_1:78707195-78707214 | Msa1216740:intron | 35.0% |
| ! | CTTTTCCTGGTATTTGACAT+AGG | + | chr8_1:78707240-78707259 | Msa1216740:intron | 35.0% |
| TGTAATGTGGTGACTTCTAA+GGG | - | chr8_1:78707363-78707382 | None:intergenic | 35.0% | |
| ATGTAATGTGGTGACTTCTA+AGG | - | chr8_1:78707364-78707383 | None:intergenic | 35.0% | |
| AAACTTTGGCACATAGTTCT+AGG | + | chr8_1:78707616-78707635 | Msa1216740:intron | 35.0% | |
| ! | TGTTTCCTATCCTTTTCCTT+CGG | + | chr8_1:78707736-78707755 | Msa1216740:intron | 35.0% |
| TCTCTACAAGAAATGTGGAA+GGG | - | chr8_1:78707932-78707951 | None:intergenic | 35.0% | |
| TTCTCTACAAGAAATGTGGA+AGG | - | chr8_1:78707933-78707952 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr8_1:78707996-78708015 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr8_1:78708100-78708119 | None:intergenic | 35.0% |
| TAGTTTCTGTTTACAAGAGC+GGG | + | chr8_1:78708416-78708435 | Msa1216740:intron | 35.0% | |
| AGTTACAGAGAGATGAATAG+AGG | + | chr8_1:78708444-78708463 | Msa1216740:intron | 35.0% | |
| GTTACAGAGAGATGAATAGA+GGG | + | chr8_1:78708445-78708464 | Msa1216740:intron | 35.0% | |
| ! | TTATATCTGCAGTGTTGGAA+TGG | - | chr8_1:78708866-78708885 | None:intergenic | 35.0% |
| GATGCTACAAGGAGATTATA+GGG | - | chr8_1:78708900-78708919 | None:intergenic | 35.0% | |
| TGATGCTACAAGGAGATTAT+AGG | - | chr8_1:78708901-78708920 | None:intergenic | 35.0% | |
| TCTTGAGGTTGAAAAGGAAA+TGG | - | chr8_1:78709027-78709046 | None:intergenic | 35.0% | |
| ! | ATTTCCTTTTCAACCTCAAG+AGG | + | chr8_1:78709026-78709045 | Msa1216740:CDS | 35.0% |
| !!! | GATGCGCCTATTTTTATTTG+AGG | - | chr8_1:78709513-78709532 | None:intergenic | 35.0% |
| ! | TTGGGCAAATTAGATTGGTT+AGG | + | chr8_1:78709564-78709583 | Msa1216740:intron | 35.0% |
| CAAATTGCTCGTAAGACAAA+CGG | - | chr8_1:78709632-78709651 | None:intergenic | 35.0% | |
| TGCATTCTTGGCAAATGTTA+AGG | + | chr8_1:78709653-78709672 | Msa1216740:CDS | 35.0% | |
| TACCTCTCGTGTTTGTTTAT+GGG | - | chr8_1:78709688-78709707 | None:intergenic | 35.0% | |
| TTACCTCTCGTGTTTGTTTA+TGG | - | chr8_1:78709689-78709708 | None:intergenic | 35.0% | |
| ATTTACAGGCTTTCATGTTC+AGG | - | chr8_1:78710011-78710030 | None:intergenic | 35.0% | |
| CTGTTCTTCATTTGATCGTG+GGG | - | chr8_1:78705886-78705905 | None:intergenic | 40.0% | |
| AAAGAGAAGGAAAAAGTGGG+AGG | + | chr8_1:78706021-78706040 | Msa1216740:five_prime_UTR | 40.0% | |
| ! | GCTACATCGAGTTGTTCAAA+TGG | - | chr8_1:78706132-78706151 | None:intergenic | 40.0% |
| CGCCCTTGAATTAGAATCAT+CGG | + | chr8_1:78706191-78706210 | Msa1216740:CDS | 40.0% | |
| TATCAAGCTCAACTCAACCA+CGG | - | chr8_1:78706392-78706411 | None:intergenic | 40.0% | |
| ACTTAATCGAGATGTCTCCA+AGG | + | chr8_1:78706470-78706489 | Msa1216740:CDS | 40.0% | |
| ACATACATGCATGCAGTTAG+AGG | + | chr8_1:78706632-78706651 | Msa1216740:intron | 40.0% | |
| TTTGCCGGTATTTAACTCAG+AGG | - | chr8_1:78706843-78706862 | None:intergenic | 40.0% | |
| CTTGTCAGACTATTTGAGAG+AGG | - | chr8_1:78707067-78707086 | None:intergenic | 40.0% | |
| ! | GGCTAATGCTATTTGTTTCC+AGG | + | chr8_1:78707194-78707213 | Msa1216740:intron | 40.0% |
| TTGACTTCTACGTCTCAGTA+TGG | + | chr8_1:78707307-78707326 | Msa1216740:CDS | 40.0% | |
| TGTAGACTGCTCTCTCATTT+AGG | + | chr8_1:78707408-78707427 | Msa1216740:intron | 40.0% | |
| !! | AATTAGCTTCAGGGTGCTTT+TGG | + | chr8_1:78707458-78707477 | Msa1216740:intron | 40.0% |
| ATGCACTTCAAGAATCTGCT+TGG | + | chr8_1:78707590-78707609 | Msa1216740:intron | 40.0% | |
| GATGCTGAATGCACATTCAA+AGG | - | chr8_1:78707651-78707670 | None:intergenic | 40.0% | |
| ! | GTTTCCTATCCTTTTCCTTC+GGG | + | chr8_1:78707737-78707756 | Msa1216740:intron | 40.0% |
| GAACATGCCAATGTCATGTT+TGG | + | chr8_1:78707759-78707778 | Msa1216740:intron | 40.0% | |
| TTCCTCTCCAAACATGACAT+TGG | - | chr8_1:78707769-78707788 | None:intergenic | 40.0% | |
| ! | AGATTTTTAAACCCCAGCAC+TGG | - | chr8_1:78707826-78707845 | None:intergenic | 40.0% |
| AATGTGGAAGGGGAAAACTT+TGG | - | chr8_1:78707921-78707940 | None:intergenic | 40.0% | |
| CTCTACAAGAAATGTGGAAG+GGG | - | chr8_1:78707931-78707950 | None:intergenic | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8_1:78708235-78708254 | None:intergenic | 40.0% |
| ! | TGTGCAGAGTATTAATTGGC+GGG | - | chr8_1:78708096-78708115 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+CGG | - | chr8_1:78708097-78708116 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8_1:78708235-78708254 | Msa1216740:intron | 40.0% |
| CTGAAGGAGCTCAACTTTAA+TGG | - | chr8_1:78708533-78708552 | None:intergenic | 40.0% | |
| AGATGAAAAACTGCAGCTGA+AGG | - | chr8_1:78708549-78708568 | None:intergenic | 40.0% | |
| GGCATGGAAGAAGATATAGA+CGG | - | chr8_1:78708623-78708642 | None:intergenic | 40.0% | |
| ! | TTTCCACCATCTGAAACATG+GGG | - | chr8_1:78708644-78708663 | None:intergenic | 40.0% |
| ! | GTTTCCACCATCTGAAACAT+GGG | - | chr8_1:78708645-78708664 | None:intergenic | 40.0% |
| ! | AGTTTCCACCATCTGAAACA+TGG | - | chr8_1:78708646-78708665 | None:intergenic | 40.0% |
| !!! | TGGTGGAAACTTTTTTGCTG+AGG | + | chr8_1:78708655-78708674 | Msa1216740:CDS | 40.0% |
| ! | AGGTCTTATATCTGCAGTGT+TGG | - | chr8_1:78708871-78708890 | None:intergenic | 40.0% |
| TGGTTCTTTGTGATGCTACA+AGG | - | chr8_1:78708911-78708930 | None:intergenic | 40.0% | |
| GATACTGATGCAGAAAGACT+AGG | - | chr8_1:78708963-78708982 | None:intergenic | 40.0% | |
| AAGGAAATGGAATGTCGTCT+TGG | - | chr8_1:78709014-78709033 | None:intergenic | 40.0% | |
| ! | TCTTCAGTGTTTTCCTCGAT+AGG | + | chr8_1:78709065-78709084 | Msa1216740:CDS | 40.0% |
| CAATGCAACAATAGCACAGT+AGG | - | chr8_1:78709148-78709167 | None:intergenic | 40.0% | |
| CTTCTTAACTTATGCGTCAC+AGG | + | chr8_1:78709324-78709343 | Msa1216740:intron | 40.0% | |
| GGTAGATGACACGATTTACA+AGG | + | chr8_1:78709467-78709486 | Msa1216740:intron | 40.0% | |
| AGATGACACGATTTACAAGG+CGG | + | chr8_1:78709470-78709489 | Msa1216740:intron | 40.0% | |
| CGTTTGTCTTACGAGCAATT+TGG | + | chr8_1:78709630-78709649 | Msa1216740:CDS | 40.0% | |
| TTCCCATAAACAAACACGAG+AGG | + | chr8_1:78709683-78709702 | Msa1216740:CDS | 40.0% | |
| AACACGAGAGGTAATTCATC+TGG | + | chr8_1:78709695-78709714 | Msa1216740:intron | 40.0% | |
| TAGACTGTATGCAAAACTGC+AGG | + | chr8_1:78709768-78709787 | Msa1216740:intron | 40.0% | |
| TGTCCATTGATGTTGTGCTT+AGG | + | chr8_1:78709873-78709892 | Msa1216740:exon | 40.0% | |
| GTCCATTGATGTTGTGCTTA+GGG | + | chr8_1:78709874-78709893 | Msa1216740:exon | 40.0% | |
| TTCTTCATTTGATCGTGGGG+TGG | - | chr8_1:78705883-78705902 | None:intergenic | 45.0% | |
| AGAAGGAAAAAGTGGGAGGA+AGG | + | chr8_1:78706025-78706044 | Msa1216740:five_prime_UTR | 45.0% | |
| AAAGTGGGAGGAAGGAACAA+AGG | + | chr8_1:78706033-78706052 | Msa1216740:five_prime_UTR | 45.0% | |
| ! | AGGAAAGATGACGGCAGAAT+CGG | + | chr8_1:78706053-78706072 | Msa1216740:exon | 45.0% |
| TTTGAACTTCGATCTTCCCG+AGG | + | chr8_1:78706080-78706099 | Msa1216740:CDS | 45.0% | |
| ! | GACACGTGTCGATAAAGCAA+TGG | - | chr8_1:78706169-78706188 | None:intergenic | 45.0% |
| TTCATCTTTCTCGGCGATCT+TGG | - | chr8_1:78706226-78706245 | None:intergenic | 45.0% | |
| GGCGATGAGTTCATCTTTCT+CGG | - | chr8_1:78706235-78706254 | None:intergenic | 45.0% | |
| CTCAAGCTGAGACTGAAGTT+CGG | - | chr8_1:78706256-78706275 | None:intergenic | 45.0% | |
| ! | ATTATCGGCGGTTTGGGATA+GGG | - | chr8_1:78706292-78706311 | None:intergenic | 45.0% |
| GAACCTTATCTTGCTCTGCA+CGG | - | chr8_1:78706320-78706339 | None:intergenic | 45.0% | |
| GACGCTTATGCAATCACTTC+AGG | + | chr8_1:78706665-78706684 | Msa1216740:CDS | 45.0% | |
| GCTTATGCAATCACTTCAGG+AGG | + | chr8_1:78706668-78706687 | Msa1216740:CDS | 45.0% | |
| ACTTCAGGAGGATGAGGATA+AGG | + | chr8_1:78706680-78706699 | Msa1216740:CDS | 45.0% | |
| TCCTGGTATTTGACATAGGG+TGG | + | chr8_1:78707244-78707263 | Msa1216740:intron | 45.0% | |
| TCCACCCTATGTCAAATACC+AGG | - | chr8_1:78707248-78707267 | None:intergenic | 45.0% | |
| ACTTCTACGTCTCAGTATGG+AGG | + | chr8_1:78707310-78707329 | Msa1216740:CDS | 45.0% | |
| ! | AATGTGGTGACTTCTAAGGG+AGG | - | chr8_1:78707360-78707379 | None:intergenic | 45.0% |
| ATGAGAGAGCAGTCTACAGA+GGG | - | chr8_1:78707406-78707425 | None:intergenic | 45.0% | |
| AATGAGAGAGCAGTCTACAG+AGG | - | chr8_1:78707407-78707426 | None:intergenic | 45.0% | |
| CACTTCAAGAATCTGCTTGG+CGG | + | chr8_1:78707593-78707612 | Msa1216740:intron | 45.0% | |
| AATCTGCTTGGCGGAAACTT+TGG | + | chr8_1:78707602-78707621 | Msa1216740:intron | 45.0% | |
| TGTTCCCGAAGGAAAAGGAT+AGG | - | chr8_1:78707744-78707763 | None:intergenic | 45.0% | |
| TGCCAATGTCATGTTTGGAG+AGG | + | chr8_1:78707764-78707783 | Msa1216740:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8_1:78708234-78708253 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8_1:78708234-78708253 | Msa1216740:intron | 45.0% |
| TTTCTGTTTACAAGAGCGGG+AGG | + | chr8_1:78708419-78708438 | Msa1216740:intron | 45.0% | |
| AAGAGCAGGAGAGACGAATA+TGG | - | chr8_1:78708501-78708520 | None:intergenic | 45.0% | |
| TCTCTCCTGCTCTTACAAAC+AGG | + | chr8_1:78708507-78708526 | Msa1216740:intron | 45.0% | |
| AATGGCCTGTTTGTAAGAGC+AGG | - | chr8_1:78708515-78708534 | None:intergenic | 45.0% | |
| GCTGAGGATCAAGAATCTGA+TGG | + | chr8_1:78708671-78708690 | Msa1216740:CDS | 45.0% | |
| ! | AGGAGATTATAGGGCACTCT+AGG | - | chr8_1:78708891-78708910 | None:intergenic | 45.0% |
| CATCACAAAGAACCACACCT+CGG | + | chr8_1:78708916-78708935 | Msa1216740:CDS | 45.0% | |
| TGATGCAGAAAGACTAGGAG+GGG | - | chr8_1:78708958-78708977 | None:intergenic | 45.0% | |
| CTGATGCAGAAAGACTAGGA+GGG | - | chr8_1:78708959-78708978 | None:intergenic | 45.0% | |
| ACTGATGCAGAAAGACTAGG+AGG | - | chr8_1:78708960-78708979 | None:intergenic | 45.0% | |
| ATAGGTCTGGATGTTCTCGT+TGG | - | chr8_1:78708987-78709006 | None:intergenic | 45.0% | |
| GAATGTCGTCTTGGAGACAT+AGG | - | chr8_1:78709005-78709024 | None:intergenic | 45.0% | |
| TGTGCCTCTTGAGGTTGAAA+AGG | - | chr8_1:78709033-78709052 | None:intergenic | 45.0% | |
| ! | TCAAGCTCTGACTCAGTAAC+AGG | + | chr8_1:78709101-78709120 | Msa1216740:CDS | 45.0% |
| TCAGTAACAGGATCACAAGC+TGG | + | chr8_1:78709113-78709132 | Msa1216740:CDS | 45.0% | |
| GCAACAATAGCACAGTAGGA+AGG | - | chr8_1:78709144-78709163 | None:intergenic | 45.0% | |
| ACTTCCACTACCAGAAACGT+CGG | + | chr8_1:78709446-78709465 | Msa1216740:intron | 45.0% | |
| !! | CGAGCAATTTGGTGCATTCT+TGG | + | chr8_1:78709641-78709660 | Msa1216740:CDS | 45.0% |
| GGAGAGGATAAGAGGAAACA+AGG | - | chr8_1:78709727-78709746 | None:intergenic | 45.0% | |
| ! | TGAAAAAAGCATGGTGGGAG+AGG | - | chr8_1:78709743-78709762 | None:intergenic | 45.0% |
| GCAGGTGACTCTACAAAAAG+CGG | + | chr8_1:78709786-78709805 | Msa1216740:intron | 45.0% | |
| TGCCCTAAGCACAACATCAA+TGG | - | chr8_1:78709879-78709898 | None:intergenic | 45.0% | |
| !!! | TATTTCTTATTTTATTTATT+TGG | - | chr8_1:78705994-78706013 | None:intergenic | 5.0% |
| ! | GGAAAGATGACGGCAGAATC+GGG | + | chr8_1:78706054-78706073 | Msa1216740:exon | 50.0% |
| TAGCACTTGCACGACATCCT+CGG | - | chr8_1:78706100-78706119 | None:intergenic | 50.0% | |
| TTGGGATAGGGAAACGTCGA+GGG | - | chr8_1:78706280-78706299 | None:intergenic | 50.0% | |
| ! | TTTGGGATAGGGAAACGTCG+AGG | - | chr8_1:78706281-78706300 | None:intergenic | 50.0% |
| ! | GATTATCGGCGGTTTGGGAT+AGG | - | chr8_1:78706293-78706312 | None:intergenic | 50.0% |
| GACGAGATTATCGGCGGTTT+GGG | - | chr8_1:78706298-78706317 | None:intergenic | 50.0% | |
| CTCTGCACGGACGAGATTAT+CGG | - | chr8_1:78706307-78706326 | None:intergenic | 50.0% | |
| GCAATCACTTCAGGAGGATG+AGG | + | chr8_1:78706674-78706693 | Msa1216740:CDS | 50.0% | |
| ! | TGGTGACTTCTAAGGGAGGA+TGG | - | chr8_1:78707356-78707375 | None:intergenic | 50.0% |
| TGGCATGTTCCCGAAGGAAA+AGG | - | chr8_1:78707749-78707768 | None:intergenic | 50.0% | |
| TGACATTGGCATGTTCCCGA+AGG | - | chr8_1:78707755-78707774 | None:intergenic | 50.0% | |
| AGGAGAGACGAATATGGAGG+GGG | - | chr8_1:78708495-78708514 | None:intergenic | 50.0% | |
| CAGGAGAGACGAATATGGAG+GGG | - | chr8_1:78708496-78708515 | None:intergenic | 50.0% | |
| GCAGGAGAGACGAATATGGA+GGG | - | chr8_1:78708497-78708516 | None:intergenic | 50.0% | |
| AGCAGGAGAGACGAATATGG+AGG | - | chr8_1:78708498-78708517 | None:intergenic | 50.0% | |
| TCCATGCCCCATGTTTCAGA+TGG | + | chr8_1:78708635-78708654 | Msa1216740:CDS | 50.0% | |
| ! | ACCATCTGAAACATGGGGCA+TGG | - | chr8_1:78708639-78708658 | None:intergenic | 50.0% |
| ATGCCCCATGTTTCAGATGG+TGG | + | chr8_1:78708638-78708657 | Msa1216740:CDS | 50.0% | |
| TCGTCTTGGAGACATAGGTC+TGG | - | chr8_1:78709000-78709019 | None:intergenic | 50.0% | |
| ATCGTCATGTGTGCCTCTTG+AGG | - | chr8_1:78709042-78709061 | None:intergenic | 50.0% | |
| ! | CAAGAGGCACACATGACGAT+AGG | + | chr8_1:78709042-78709061 | Msa1216740:CDS | 50.0% |
| ! | GTGTTTTCCTCGATAGGTCG+CGG | + | chr8_1:78709071-78709090 | Msa1216740:CDS | 50.0% |
| TATTGAACCGCGACCTATCG+AGG | - | chr8_1:78709081-78709100 | None:intergenic | 50.0% | |
| TATGCGTCACAGGACGTACA+CGG | + | chr8_1:78709334-78709353 | Msa1216740:intron | 50.0% | |
| AGGAGTTCTTTCGCCAAGTC+AGG | + | chr8_1:78709367-78709386 | Msa1216740:CDS | 50.0% | |
| TTCTTTCGCCAAGTCAGGTG+AGG | + | chr8_1:78709372-78709391 | Msa1216740:intron | 50.0% | |
| AAAAGGGACCTCACCTGACT+TGG | - | chr8_1:78709383-78709402 | None:intergenic | 50.0% | |
| !! | TCTACCGACGTTTCTGGTAG+TGG | - | chr8_1:78709453-78709472 | None:intergenic | 50.0% |
| GTGTCATCTACCGACGTTTC+TGG | - | chr8_1:78709459-78709478 | None:intergenic | 50.0% | |
| ! | AAGATGACGGCAGAATCGGG+AGG | + | chr8_1:78706057-78706076 | Msa1216740:exon | 55.0% |
| AGCACTTGCACGACATCCTC+GGG | - | chr8_1:78706099-78706118 | None:intergenic | 55.0% | |
| GGACGAGATTATCGGCGGTT+TGG | - | chr8_1:78706299-78706318 | None:intergenic | 55.0% | |
| TGCACGGACGAGATTATCGG+CGG | - | chr8_1:78706304-78706323 | None:intergenic | 55.0% | |
| CGTCCGTGCAGAGCAAGATA+AGG | + | chr8_1:78706314-78706333 | Msa1216740:CDS | 55.0% | |
| AGTGGGAGTAATCCGAGGTG+TGG | - | chr8_1:78708931-78708950 | None:intergenic | 55.0% | |
| ACACCTCGGATTACTCCCAC+TGG | + | chr8_1:78708930-78708949 | Msa1216740:CDS | 55.0% | |
| GAACCAGTGGGAGTAATCCG+AGG | - | chr8_1:78708936-78708955 | None:intergenic | 55.0% | |
| AGACTAGGAGGGGAACCAGT+GGG | - | chr8_1:78708948-78708967 | None:intergenic | 55.0% | |
| AAGACTAGGAGGGGAACCAG+TGG | - | chr8_1:78708949-78708968 | None:intergenic | 55.0% | |
| ATGCGTCACAGGACGTACAC+GGG | + | chr8_1:78709335-78709354 | Msa1216740:intron | 55.0% | |
| ! | GCATGGTGGGAGAGGATAAG+AGG | - | chr8_1:78709735-78709754 | None:intergenic | 55.0% |
| ACAGGACGTACACGGGTGGA+TGG | + | chr8_1:78709342-78709361 | Msa1216740:intron | 60.0% | |
| CAGGACGTACACGGGTGGAT+GGG | + | chr8_1:78709343-78709362 | Msa1216740:intron | 60.0% | |
| ACGTACACGGGTGGATGGGA+AGG | + | chr8_1:78709347-78709366 | Msa1216740:CDS | 60.0% | |
| CGTCACAGGACGTACACGGG+TGG | + | chr8_1:78709338-78709357 | Msa1216740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 78705880 | 78710093 | 78705880 | ID=Msa1216740;Name=Msa1216740 |
| chr8_1 | mRNA | 78705880 | 78710093 | 78705880 | ID=Msa1216740-mRNA-1;Parent=Msa1216740;Name=Msa1216740-mRNA-1;_AED=0.08;_eAED=0.08;_QI=180|1|1|1|1|1|9|211|346 |
| chr8_1 | exon | 78705880 | 78706335 | 78705880 | ID=Msa1216740-mRNA-1:exon:27249;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78706423 | 78706491 | 78706423 | ID=Msa1216740-mRNA-1:exon:27250;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78706648 | 78706710 | 78706648 | ID=Msa1216740-mRNA-1:exon:27251;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78707262 | 78707331 | 78707262 | ID=Msa1216740-mRNA-1:exon:27252;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78708600 | 78708692 | 78708600 | ID=Msa1216740-mRNA-1:exon:27253;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78708880 | 78709134 | 78708880 | ID=Msa1216740-mRNA-1:exon:27254;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78709346 | 78709388 | 78709346 | ID=Msa1216740-mRNA-1:exon:27255;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78709626 | 78709704 | 78709626 | ID=Msa1216740-mRNA-1:exon:27256;Parent=Msa1216740-mRNA-1 |
| chr8_1 | exon | 78709790 | 78710093 | 78709790 | ID=Msa1216740-mRNA-1:exon:27257;Parent=Msa1216740-mRNA-1 |
| chr8_1 | five_prime_UTR | 78705880 | 78706059 | 78705880 | ID=Msa1216740-mRNA-1:five_prime_utr;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78706060 | 78706335 | 78706060 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78706423 | 78706491 | 78706423 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78706648 | 78706710 | 78706648 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78707262 | 78707331 | 78707262 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78708600 | 78708692 | 78708600 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78708880 | 78709134 | 78708880 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78709346 | 78709388 | 78709346 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78709626 | 78709704 | 78709626 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | CDS | 78709790 | 78709882 | 78709790 | ID=Msa1216740-mRNA-1:cds;Parent=Msa1216740-mRNA-1 |
| chr8_1 | three_prime_UTR | 78709883 | 78710093 | 78709883 | ID=Msa1216740-mRNA-1:three_prime_utr;Parent=Msa1216740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
