Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218710 | sp|Q42381|HLS1_ARATH | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 7.12e-68 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218710 | A0A396IJ64 | 97.052 | 407 | 12 | 0 | 1 | 407 | 1 | 407 | 0.0 | 820 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1218710 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622410 | Msa1218710 | 0.816723 | 4.773860e-52 | -8.615850e-47 |
| Msa1218710 | Msa1419050 | 0.856716 | 2.664896e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218710 | MtrunA17_Chr4g0068331 | 97.052 | 407 | 12 | 0 | 1 | 407 | 1 | 407 | 0.0 | 820 |
| Msa1218710 | MtrunA17_Chr3g0105631 | 37.037 | 405 | 219 | 15 | 13 | 406 | 8 | 387 | 1.87e-72 | 232 |
| Msa1218710 | MtrunA17_Chr4g0001411 | 34.390 | 410 | 239 | 11 | 8 | 407 | 20 | 409 | 2.10e-63 | 209 |
| Msa1218710 | MtrunA17_Chr4g0053961 | 33.571 | 420 | 241 | 12 | 11 | 407 | 7 | 411 | 2.01e-62 | 206 |
| Msa1218710 | MtrunA17_Chr5g0401351 | 33.976 | 415 | 242 | 12 | 7 | 406 | 5 | 402 | 2.62e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1218710 | AT4G37580.1 | 35.817 | 416 | 232 | 14 | 12 | 407 | 3 | 403 | 7.24e-69 | 223 |
| Msa1218710 | AT2G23060.1 | 33.570 | 423 | 241 | 13 | 11 | 407 | 5 | 413 | 1.31e-65 | 215 |
| Msa1218710 | AT2G30090.1 | 34.390 | 410 | 214 | 19 | 13 | 406 | 15 | 385 | 3.74e-54 | 184 |
| Msa1218710 | AT4G37580.2 | 33.994 | 353 | 204 | 10 | 74 | 407 | 4 | 346 | 5.82e-54 | 182 |
| Msa1218710 | AT5G67430.1 | 33.496 | 409 | 228 | 14 | 11 | 406 | 8 | 385 | 5.74e-53 | 181 |
| Msa1218710 | AT5G67430.2 | 32.492 | 317 | 194 | 9 | 91 | 406 | 23 | 320 | 4.92e-39 | 142 |
| Msa1218710 | AT2G23060.2 | 30.208 | 288 | 188 | 7 | 124 | 407 | 1 | 279 | 1.03e-35 | 132 |
Find 84 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTGTGCAAACTCCTTC+TGG | 0.261524 | 8_1:+81347666 | Msa1218710:CDS |
| GAGCTTGTTGGAGTTGTTAA+AGG | 0.270934 | 8_1:+81347636 | Msa1218710:CDS |
| GATTAATGGGACTACTAAAA+AGG | 0.272190 | 8_1:+81347349 | Msa1218710:CDS |
| AGGGTTGTTATAACTGAGTT+AGG | 0.299823 | 8_1:+81348695 | Msa1218710:CDS |
| GTGACCCTTTATCTAGGATT+AGG | 0.304028 | 8_1:+81347405 | Msa1218710:CDS |
| AGTTGCATTTGTTGGTGAAT+AGG | 0.308058 | 8_1:-81348112 | None:intergenic |
| TTTCAAGATTCTTGTGTAGA+AGG | 0.309351 | 8_1:-81348249 | None:intergenic |
| AGAAACTGTACTGAGATTAA+TGG | 0.318075 | 8_1:+81347335 | Msa1218710:CDS |
| TAGAACCTAATCCTAGATAA+AGG | 0.318214 | 8_1:-81347410 | None:intergenic |
| ATCTAATGGATACAACTCTT+TGG | 0.333407 | 8_1:-81348273 | None:intergenic |
| GTTGGTGAATAGGTTATTAG+AGG | 0.345184 | 8_1:-81348102 | None:intergenic |
| TTCTTAGAAATGTGGTTTGT+TGG | 0.348075 | 8_1:-81348185 | None:intergenic |
| ATGTGTAACAACAGTACATT+TGG | 0.356097 | 8_1:+81348566 | Msa1218710:CDS |
| GAAACTGTACTGAGATTAAT+GGG | 0.378728 | 8_1:+81347336 | Msa1218710:CDS |
| AGAATAATGTCCATATCTAA+TGG | 0.380464 | 8_1:-81348287 | None:intergenic |
| GCGGGCTAATGGAATCAATA+TGG | 0.381668 | 8_1:+81348633 | Msa1218710:CDS |
| AGAGAATCTTGGCGGGCTAA+TGG | 0.382594 | 8_1:+81348622 | Msa1218710:CDS |
| TCTTAGAAATGTGGTTTGTT+GGG | 0.383397 | 8_1:-81348184 | None:intergenic |
| GTTATAACTGAGTTAGGGTT+TGG | 0.401121 | 8_1:+81348701 | Msa1218710:CDS |
| TTCAAGATGGGTTGTATACT+AGG | 0.416953 | 8_1:+81347696 | Msa1218710:CDS |
| TGATGATGAAAATGATGAAT+TGG | 0.425086 | 8_1:+81348811 | Msa1218710:CDS |
| TGGAGGTTTACATCAAGATT+AGG | 0.428439 | 8_1:+81348653 | Msa1218710:CDS |
| CATGATAATTACCTGTGTAT+AGG | 0.429059 | 8_1:-81347732 | None:intergenic |
| TTCTGGATCACTCTTCAAGA+TGG | 0.429973 | 8_1:+81347683 | Msa1218710:CDS |
| ATTGAAATAGTTGCATTTGT+TGG | 0.433692 | 8_1:-81348120 | None:intergenic |
| GTTGAAAACAAGGAGCTTGT+TGG | 0.434978 | 8_1:+81347624 | Msa1218710:CDS |
| AGAGTTGTATCCATTAGATA+TGG | 0.437070 | 8_1:+81348277 | Msa1218710:CDS |
| AAATTTACTGTGCAGGAGAA+AGG | 0.442722 | 8_1:+81347986 | Msa1218710:intron |
| GTAATGGTGACCCTTTATCT+AGG | 0.452354 | 8_1:+81347399 | Msa1218710:CDS |
| GGAATGTGTTTGTTGATCCT+AGG | 0.455878 | 8_1:+81348858 | Msa1218710:CDS |
| CAAAATTATTTCAACCACTT+AGG | 0.457975 | 8_1:+81348477 | Msa1218710:CDS |
| GGGTTGTTATAACTGAGTTA+GGG | 0.463044 | 8_1:+81348696 | Msa1218710:CDS |
| CTATCCCCTTCGTGTTATGT+TGG | 0.463391 | 8_1:+81347430 | Msa1218710:CDS |
| TAGCATCCACTCTTCAATTG+AGG | 0.471060 | 8_1:-81348030 | None:intergenic |
| CATGGAGAGGGAGAGAATCT+TGG | 0.478715 | 8_1:+81348611 | Msa1218710:CDS |
| TGTGTATAGGAGAGACTCTA+AGG | 0.479289 | 8_1:-81347719 | None:intergenic |
| AATAACTAACCCAAGTTCCT+AGG | 0.480250 | 8_1:-81348325 | None:intergenic |
| TCTGGATCACTCTTCAAGAT+GGG | 0.484366 | 8_1:+81347684 | Msa1218710:CDS |
| GATAGAGACGTTAAAGTGGT+GGG | 0.487062 | 8_1:+81347302 | Msa1218710:CDS |
| GAATGTGTTTGTTGATCCTA+GGG | 0.487462 | 8_1:+81348859 | Msa1218710:CDS |
| AGAACCTAATCCTAGATAAA+GGG | 0.491131 | 8_1:-81347409 | None:intergenic |
| CACGACATAGAATCAATTTG+AGG | 0.498622 | 8_1:-81348746 | None:intergenic |
| AATTTACTGTGCAGGAGAAA+GGG | 0.506218 | 8_1:+81347987 | Msa1218710:intron |
| TGTGTAACAACAGTACATTT+GGG | 0.506653 | 8_1:+81348567 | Msa1218710:CDS |
| AACAAACCACATTTCTAAGA+AGG | 0.512894 | 8_1:+81348187 | Msa1218710:CDS |
| TTGGGAAACTAGTTGGTGGA+TGG | 0.520506 | 8_1:-81348166 | None:intergenic |
| TTCACCAACATGATGAGTAA+TGG | 0.521767 | 8_1:+81347383 | Msa1218710:CDS |
| CTTTATGGACTTCATGGAGA+GGG | 0.530822 | 8_1:+81348599 | Msa1218710:CDS |
| TGGTTTGTTGGGAAACTAGT+TGG | 0.533846 | 8_1:-81348173 | None:intergenic |
| AGCTGAGATGGTTGAAAACA+AGG | 0.541254 | 8_1:+81347614 | Msa1218710:CDS |
| AAAGTACAACAAGCTCATCA+TGG | 0.542735 | 8_1:+81348396 | Msa1218710:CDS |
| AAAACTCAGCCTAGGAACTT+GGG | 0.550630 | 8_1:+81348316 | Msa1218710:CDS |
| TTTGTTGGGAAACTAGTTGG+TGG | 0.550774 | 8_1:-81348170 | None:intergenic |
| TGACATCCTTCTTAGAAATG+TGG | 0.553319 | 8_1:-81348193 | None:intergenic |
| TGATGAAAATGATGAATTGG+TGG | 0.563601 | 8_1:+81348814 | Msa1218710:CDS |
| TGAGGAACATGGTTTACAAG+TGG | 0.564375 | 8_1:-81348728 | None:intergenic |
| ATAGAGACGTTAAAGTGGTG+GGG | 0.567023 | 8_1:+81347303 | Msa1218710:CDS |
| GGAGAGGGAGAGAATCTTGG+CGG | 0.572469 | 8_1:+81348614 | Msa1218710:CDS |
| GAAGAGTGGATGCTAAGAAA+TGG | 0.583171 | 8_1:+81348038 | Msa1218710:CDS |
| TGAAGATAGAGACGTTAAAG+TGG | 0.583839 | 8_1:+81347298 | Msa1218710:CDS |
| TAGAATCAATTTGAGGAACA+TGG | 0.588050 | 8_1:-81348739 | None:intergenic |
| AGATAGAGACGTTAAAGTGG+TGG | 0.592949 | 8_1:+81347301 | Msa1218710:CDS |
| CTGTGCAGGAGAAAGGGAGT+TGG | 0.597746 | 8_1:+81347993 | Msa1218710:intron |
| GTCGCATGAAGAAACCTAAG+TGG | 0.602408 | 8_1:-81348491 | None:intergenic |
| TGCGACATTAAATCATGCAA+AGG | 0.605817 | 8_1:+81348508 | Msa1218710:CDS |
| TGGCCTGCAGGTAGCTGAGA+TGG | 0.614618 | 8_1:+81347602 | Msa1218710:intron |
| GAGAGGGAGAGAATCTTGGC+GGG | 0.615284 | 8_1:+81348615 | Msa1218710:CDS |
| GAGGTGATGAAGAGACAACT+CGG | 0.616820 | 8_1:+81348836 | Msa1218710:CDS |
| ACACACCAACATAACACGAA+GGG | 0.618929 | 8_1:-81347435 | None:intergenic |
| GTCACCATTACTCATCATGT+TGG | 0.630070 | 8_1:-81347387 | None:intergenic |
| TTGTAACCTCAATTGAAGAG+TGG | 0.632770 | 8_1:+81348024 | Msa1218710:CDS |
| CACATACAGTATAGAGAGCG+AGG | 0.638269 | 8_1:+81347256 | Msa1218710:CDS |
| TGTCGTGTATTGATGATATG+TGG | 0.645905 | 8_1:+81348762 | Msa1218710:CDS |
| AGGTGATGAAGAGACAACTC+GGG | 0.647405 | 8_1:+81348837 | Msa1218710:CDS |
| TCTTTATGGACTTCATGGAG+AGG | 0.647924 | 8_1:+81348598 | Msa1218710:CDS |
| TGAAAATGATGAATTGGTGG+AGG | 0.648658 | 8_1:+81348817 | Msa1218710:CDS |
| TTAGAGTCTCTCCTATACAC+AGG | 0.650718 | 8_1:+81347721 | Msa1218710:CDS |
| GAGACGTTAAAGTGGTGGGG+AGG | 0.666370 | 8_1:+81347306 | Msa1218710:CDS |
| CACACCAACATAACACGAAG+GGG | 0.668902 | 8_1:-81347434 | None:intergenic |
| TACACACCAACATAACACGA+AGG | 0.672948 | 8_1:-81347436 | None:intergenic |
| GGCTAATGGAATCAATATGG+AGG | 0.674786 | 8_1:+81348636 | Msa1218710:CDS |
| ATGGAGATATATGATGAGTG+AGG | 0.681980 | 8_1:-81348147 | None:intergenic |
| GAGTCAAACATTCTCAAACA+AGG | 0.685595 | 8_1:-81348542 | None:intergenic |
| ATCTTGAAGAGTGATCCAGA+AGG | 0.751962 | 8_1:-81347681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTTTGTTTTAACTTGA+AGG | - | chr8_1:81348466-81348485 | None:intergenic | 15.0% |
| !!! | ATAATTTTGTTTTAACTTGA+AGG | - | chr8_1:81348466-81348485 | None:intergenic | 15.0% |
| !! | ATATAATATATATACACCTG+CGG | - | chr8_1:81347550-81347569 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | + | chr8_1:81347582-81347601 | Msa1218710:intron | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | - | chr8_1:81347977-81347996 | None:intergenic | 20.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | + | chr8_1:81348667-81348686 | Msa1218710:CDS | 20.0% |
| !! | ATATAATATATATACACCTG+CGG | - | chr8_1:81347550-81347569 | None:intergenic | 20.0% |
| !!! | TATATGATGATGATACATAA+TGG | + | chr8_1:81347582-81347601 | Msa1218710:intron | 20.0% |
| !! | ACAGTAAATTTAATGTAATG+TGG | - | chr8_1:81347977-81347996 | None:intergenic | 20.0% |
| !! | AAGATTAGGAGAAAAATTAA+AGG | + | chr8_1:81348667-81348686 | Msa1218710:CDS | 20.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | + | chr8_1:81347350-81347369 | Msa1218710:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | - | chr8_1:81347494-81347513 | None:intergenic | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | + | chr8_1:81347979-81347998 | Msa1218710:intron | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | - | chr8_1:81348123-81348142 | None:intergenic | 25.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | - | chr8_1:81348290-81348309 | None:intergenic | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | + | chr8_1:81348477-81348496 | Msa1218710:CDS | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | + | chr8_1:81348584-81348603 | Msa1218710:CDS | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | + | chr8_1:81348676-81348695 | Msa1218710:CDS | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | + | chr8_1:81348811-81348830 | Msa1218710:CDS | 25.0% |
| ! | ATTAATGGGACTACTAAAAA+GGG | + | chr8_1:81347350-81347369 | Msa1218710:CDS | 25.0% |
| !!! | AAAGAGTATTTGATGAAAAG+AGG | - | chr8_1:81347494-81347513 | None:intergenic | 25.0% |
| ! | TTACATTAAATTTACTGTGC+AGG | + | chr8_1:81347979-81347998 | Msa1218710:intron | 25.0% |
| ! | ATTGAAATAGTTGCATTTGT+TGG | - | chr8_1:81348123-81348142 | None:intergenic | 25.0% |
| ! | AGAATAATGTCCATATCTAA+TGG | - | chr8_1:81348290-81348309 | None:intergenic | 25.0% |
| ! | CAAAATTATTTCAACCACTT+AGG | + | chr8_1:81348477-81348496 | Msa1218710:CDS | 25.0% |
| !!! | TTTGGGTTTCTTTTTCTTTA+TGG | + | chr8_1:81348584-81348603 | Msa1218710:CDS | 25.0% |
| !! | AGAAAAATTAAAGGAGTGTA+GGG | + | chr8_1:81348676-81348695 | Msa1218710:CDS | 25.0% |
| !! | TGATGATGAAAATGATGAAT+TGG | + | chr8_1:81348811-81348830 | Msa1218710:CDS | 25.0% |
| AGAAACTGTACTGAGATTAA+TGG | + | chr8_1:81347335-81347354 | Msa1218710:CDS | 30.0% | |
| GAAACTGTACTGAGATTAAT+GGG | + | chr8_1:81347336-81347355 | Msa1218710:CDS | 30.0% | |
| GATTAATGGGACTACTAAAA+AGG | + | chr8_1:81347349-81347368 | Msa1218710:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | - | chr8_1:81347412-81347431 | None:intergenic | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | - | chr8_1:81347413-81347432 | None:intergenic | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | + | chr8_1:81347508-81347527 | Msa1218710:intron | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | - | chr8_1:81347735-81347754 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | + | chr8_1:81347733-81347752 | Msa1218710:intron | 30.0% | |
| ! | TATTTTGTGACGCTATATAG+AGG | - | chr8_1:81347794-81347813 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | + | chr8_1:81347876-81347895 | Msa1218710:intron | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | - | chr8_1:81348187-81348206 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | - | chr8_1:81348188-81348207 | None:intergenic | 30.0% |
| ! | AACAAACCACATTTCTAAGA+AGG | + | chr8_1:81348187-81348206 | Msa1218710:CDS | 30.0% |
| TTTCAAGATTCTTGTGTAGA+AGG | - | chr8_1:81348252-81348271 | None:intergenic | 30.0% | |
| ! | ATCTAATGGATACAACTCTT+TGG | - | chr8_1:81348276-81348295 | None:intergenic | 30.0% |
| AGAGTTGTATCCATTAGATA+TGG | + | chr8_1:81348277-81348296 | Msa1218710:CDS | 30.0% | |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | - | chr8_1:81348393-81348412 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | - | chr8_1:81348394-81348413 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | + | chr8_1:81348414-81348433 | Msa1218710:CDS | 30.0% |
| ATGTGTAACAACAGTACATT+TGG | + | chr8_1:81348566-81348585 | Msa1218710:CDS | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | + | chr8_1:81348567-81348586 | Msa1218710:CDS | 30.0% | |
| ! | CTTTTTCTTTATGGACTTCA+TGG | + | chr8_1:81348593-81348612 | Msa1218710:CDS | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | + | chr8_1:81348675-81348694 | Msa1218710:CDS | 30.0% |
| TAGAATCAATTTGAGGAACA+TGG | - | chr8_1:81348742-81348761 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | + | chr8_1:81348814-81348833 | Msa1218710:CDS | 30.0% | |
| AGAAACTGTACTGAGATTAA+TGG | + | chr8_1:81347335-81347354 | Msa1218710:CDS | 30.0% | |
| GAAACTGTACTGAGATTAAT+GGG | + | chr8_1:81347336-81347355 | Msa1218710:CDS | 30.0% | |
| GATTAATGGGACTACTAAAA+AGG | + | chr8_1:81347349-81347368 | Msa1218710:CDS | 30.0% | |
| AGAACCTAATCCTAGATAAA+GGG | - | chr8_1:81347412-81347431 | None:intergenic | 30.0% | |
| TAGAACCTAATCCTAGATAA+AGG | - | chr8_1:81347413-81347432 | None:intergenic | 30.0% | |
| CTCTTTCAAATCTACTTTAC+TGG | + | chr8_1:81347508-81347527 | Msa1218710:intron | 30.0% | |
| CATGATAATTACCTGTGTAT+AGG | - | chr8_1:81347735-81347754 | None:intergenic | 30.0% | |
| CTATACACAGGTAATTATCA+TGG | + | chr8_1:81347733-81347752 | Msa1218710:intron | 30.0% | |
| ! | TATTTTGTGACGCTATATAG+AGG | - | chr8_1:81347794-81347813 | None:intergenic | 30.0% |
| !! | GTTATCCCTAACTATTTTAG+TGG | + | chr8_1:81347876-81347895 | Msa1218710:intron | 30.0% |
| !! | TCTTAGAAATGTGGTTTGTT+GGG | - | chr8_1:81348187-81348206 | None:intergenic | 30.0% |
| ! | TTCTTAGAAATGTGGTTTGT+TGG | - | chr8_1:81348188-81348207 | None:intergenic | 30.0% |
| ! | AACAAACCACATTTCTAAGA+AGG | + | chr8_1:81348187-81348206 | Msa1218710:CDS | 30.0% |
| TTTCAAGATTCTTGTGTAGA+AGG | - | chr8_1:81348252-81348271 | None:intergenic | 30.0% | |
| ! | ATCTAATGGATACAACTCTT+TGG | - | chr8_1:81348276-81348295 | None:intergenic | 30.0% |
| AGAGTTGTATCCATTAGATA+TGG | + | chr8_1:81348277-81348296 | Msa1218710:CDS | 30.0% | |
| !!! | TGAGCTTGTTGTACTTTTAT+GGG | - | chr8_1:81348393-81348412 | None:intergenic | 30.0% |
| !!! | ATGAGCTTGTTGTACTTTTA+TGG | - | chr8_1:81348394-81348413 | None:intergenic | 30.0% |
| ! | CATGGATCATTTTCAGTTTA+TGG | + | chr8_1:81348414-81348433 | Msa1218710:CDS | 30.0% |
| ATGTGTAACAACAGTACATT+TGG | + | chr8_1:81348566-81348585 | Msa1218710:CDS | 30.0% | |
| TGTGTAACAACAGTACATTT+GGG | + | chr8_1:81348567-81348586 | Msa1218710:CDS | 30.0% | |
| ! | CTTTTTCTTTATGGACTTCA+TGG | + | chr8_1:81348593-81348612 | Msa1218710:CDS | 30.0% |
| ! | GAGAAAAATTAAAGGAGTGT+AGG | + | chr8_1:81348675-81348694 | Msa1218710:CDS | 30.0% |
| TAGAATCAATTTGAGGAACA+TGG | - | chr8_1:81348742-81348761 | None:intergenic | 30.0% | |
| TGATGAAAATGATGAATTGG+TGG | + | chr8_1:81348814-81348833 | Msa1218710:CDS | 30.0% | |
| TGAAGATAGAGACGTTAAAG+TGG | + | chr8_1:81347298-81347317 | Msa1218710:CDS | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | + | chr8_1:81347383-81347402 | Msa1218710:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | + | chr8_1:81347531-81347550 | Msa1218710:intron | 35.0% | |
| !! | TTCAAGATGGGTTGTATACT+AGG | + | chr8_1:81347696-81347715 | Msa1218710:CDS | 35.0% |
| TGCGACCACTAAAATAGTTA+GGG | - | chr8_1:81347884-81347903 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | - | chr8_1:81347922-81347941 | None:intergenic | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | + | chr8_1:81347986-81348005 | Msa1218710:intron | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | + | chr8_1:81347987-81348006 | Msa1218710:intron | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | + | chr8_1:81348024-81348043 | Msa1218710:CDS | 35.0% | |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | - | chr8_1:81348079-81348098 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | - | chr8_1:81348084-81348103 | None:intergenic | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | - | chr8_1:81348105-81348124 | None:intergenic | 35.0% |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | - | chr8_1:81348115-81348134 | None:intergenic | 35.0% |
| ATGGAGATATATGATGAGTG+AGG | - | chr8_1:81348150-81348169 | None:intergenic | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | - | chr8_1:81348196-81348215 | None:intergenic | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | - | chr8_1:81348328-81348347 | None:intergenic | 35.0% | |
| AAAGTACAACAAGCTCATCA+TGG | + | chr8_1:81348396-81348415 | Msa1218710:CDS | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | + | chr8_1:81348508-81348527 | Msa1218710:CDS | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | - | chr8_1:81348545-81348564 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | + | chr8_1:81348653-81348672 | Msa1218710:CDS | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | + | chr8_1:81348695-81348714 | Msa1218710:CDS | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | + | chr8_1:81348696-81348715 | Msa1218710:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | + | chr8_1:81348701-81348720 | Msa1218710:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | - | chr8_1:81348749-81348768 | None:intergenic | 35.0% | |
| ! | TGTCGTGTATTGATGATATG+TGG | + | chr8_1:81348762-81348781 | Msa1218710:CDS | 35.0% |
| ATGTGGTACACAAAAAGACT+TGG | + | chr8_1:81348779-81348798 | Msa1218710:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | + | chr8_1:81348817-81348836 | Msa1218710:CDS | 35.0% | |
| ! | GAATGTGTTTGTTGATCCTA+GGG | + | chr8_1:81348859-81348878 | Msa1218710:CDS | 35.0% |
| TGAAGATAGAGACGTTAAAG+TGG | + | chr8_1:81347298-81347317 | Msa1218710:CDS | 35.0% | |
| TTCACCAACATGATGAGTAA+TGG | + | chr8_1:81347383-81347402 | Msa1218710:CDS | 35.0% | |
| TCAAATATATATGTAGCCGC+AGG | + | chr8_1:81347531-81347550 | Msa1218710:intron | 35.0% | |
| !! | TTCAAGATGGGTTGTATACT+AGG | + | chr8_1:81347696-81347715 | Msa1218710:CDS | 35.0% |
| TGCGACCACTAAAATAGTTA+GGG | - | chr8_1:81347884-81347903 | None:intergenic | 35.0% | |
| CACGACTAATACAATCTGTA+TGG | - | chr8_1:81347922-81347941 | None:intergenic | 35.0% | |
| AAATTTACTGTGCAGGAGAA+AGG | + | chr8_1:81347986-81348005 | Msa1218710:intron | 35.0% | |
| AATTTACTGTGCAGGAGAAA+GGG | + | chr8_1:81347987-81348006 | Msa1218710:intron | 35.0% | |
| TTGTAACCTCAATTGAAGAG+TGG | + | chr8_1:81348024-81348043 | Msa1218710:CDS | 35.0% | |
| ! | TGTTATTCTTTTCTGTGGCT+AGG | - | chr8_1:81348079-81348098 | None:intergenic | 35.0% |
| !! | GGCATTGTTATTCTTTTCTG+TGG | - | chr8_1:81348084-81348103 | None:intergenic | 35.0% |
| ! | GTTGGTGAATAGGTTATTAG+AGG | - | chr8_1:81348105-81348124 | None:intergenic | 35.0% |
| ! | AGTTGCATTTGTTGGTGAAT+AGG | - | chr8_1:81348115-81348134 | None:intergenic | 35.0% |
| ATGGAGATATATGATGAGTG+AGG | - | chr8_1:81348150-81348169 | None:intergenic | 35.0% | |
| TGACATCCTTCTTAGAAATG+TGG | - | chr8_1:81348196-81348215 | None:intergenic | 35.0% | |
| AATAACTAACCCAAGTTCCT+AGG | - | chr8_1:81348328-81348347 | None:intergenic | 35.0% | |
| AAAGTACAACAAGCTCATCA+TGG | + | chr8_1:81348396-81348415 | Msa1218710:CDS | 35.0% | |
| TGCGACATTAAATCATGCAA+AGG | + | chr8_1:81348508-81348527 | Msa1218710:CDS | 35.0% | |
| GAGTCAAACATTCTCAAACA+AGG | - | chr8_1:81348545-81348564 | None:intergenic | 35.0% | |
| TGGAGGTTTACATCAAGATT+AGG | + | chr8_1:81348653-81348672 | Msa1218710:CDS | 35.0% | |
| AGGGTTGTTATAACTGAGTT+AGG | + | chr8_1:81348695-81348714 | Msa1218710:CDS | 35.0% | |
| GGGTTGTTATAACTGAGTTA+GGG | + | chr8_1:81348696-81348715 | Msa1218710:CDS | 35.0% | |
| GTTATAACTGAGTTAGGGTT+TGG | + | chr8_1:81348701-81348720 | Msa1218710:CDS | 35.0% | |
| CACGACATAGAATCAATTTG+AGG | - | chr8_1:81348749-81348768 | None:intergenic | 35.0% | |
| ! | TGTCGTGTATTGATGATATG+TGG | + | chr8_1:81348762-81348781 | Msa1218710:CDS | 35.0% |
| ATGTGGTACACAAAAAGACT+TGG | + | chr8_1:81348779-81348798 | Msa1218710:CDS | 35.0% | |
| TGAAAATGATGAATTGGTGG+AGG | + | chr8_1:81348817-81348836 | Msa1218710:CDS | 35.0% | |
| ! | GAATGTGTTTGTTGATCCTA+GGG | + | chr8_1:81348859-81348878 | Msa1218710:CDS | 35.0% |
| AGATAGAGACGTTAAAGTGG+TGG | + | chr8_1:81347301-81347320 | Msa1218710:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | + | chr8_1:81347302-81347321 | Msa1218710:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | + | chr8_1:81347303-81347322 | Msa1218710:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | - | chr8_1:81347390-81347409 | None:intergenic | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | + | chr8_1:81347399-81347418 | Msa1218710:CDS | 40.0% | |
| ! | GTGACCCTTTATCTAGGATT+AGG | + | chr8_1:81347405-81347424 | Msa1218710:CDS | 40.0% |
| ACACACCAACATAACACGAA+GGG | - | chr8_1:81347438-81347457 | None:intergenic | 40.0% | |
| TACACACCAACATAACACGA+AGG | - | chr8_1:81347439-81347458 | None:intergenic | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | + | chr8_1:81347614-81347633 | Msa1218710:CDS | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | + | chr8_1:81347624-81347643 | Msa1218710:CDS | 40.0% | |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | + | chr8_1:81347636-81347655 | Msa1218710:CDS | 40.0% |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | + | chr8_1:81347666-81347685 | Msa1218710:CDS | 40.0% |
| ATCTTGAAGAGTGATCCAGA+AGG | - | chr8_1:81347684-81347703 | None:intergenic | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | + | chr8_1:81347683-81347702 | Msa1218710:CDS | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | + | chr8_1:81347684-81347703 | Msa1218710:CDS | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | - | chr8_1:81347722-81347741 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | + | chr8_1:81347721-81347740 | Msa1218710:CDS | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | - | chr8_1:81347885-81347904 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | - | chr8_1:81348033-81348052 | None:intergenic | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | + | chr8_1:81348038-81348057 | Msa1218710:CDS | 40.0% | |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | - | chr8_1:81348075-81348094 | None:intergenic | 40.0% |
| TTTGTTGGGAAACTAGTTGG+TGG | - | chr8_1:81348173-81348192 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | - | chr8_1:81348176-81348195 | None:intergenic | 40.0% |
| CTCAAAGAAAAACTCAGCCT+AGG | + | chr8_1:81348308-81348327 | Msa1218710:CDS | 40.0% | |
| AAAAACTCAGCCTAGGAACT+TGG | + | chr8_1:81348315-81348334 | Msa1218710:CDS | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | + | chr8_1:81348316-81348335 | Msa1218710:CDS | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | + | chr8_1:81348598-81348617 | Msa1218710:CDS | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | + | chr8_1:81348599-81348618 | Msa1218710:CDS | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | + | chr8_1:81348636-81348655 | Msa1218710:CDS | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | - | chr8_1:81348731-81348750 | None:intergenic | 40.0% | |
| ! | GGAATGTGTTTGTTGATCCT+AGG | + | chr8_1:81348858-81348877 | Msa1218710:CDS | 40.0% |
| AGATAGAGACGTTAAAGTGG+TGG | + | chr8_1:81347301-81347320 | Msa1218710:CDS | 40.0% | |
| GATAGAGACGTTAAAGTGGT+GGG | + | chr8_1:81347302-81347321 | Msa1218710:CDS | 40.0% | |
| ATAGAGACGTTAAAGTGGTG+GGG | + | chr8_1:81347303-81347322 | Msa1218710:CDS | 40.0% | |
| GTCACCATTACTCATCATGT+TGG | - | chr8_1:81347390-81347409 | None:intergenic | 40.0% | |
| GTAATGGTGACCCTTTATCT+AGG | + | chr8_1:81347399-81347418 | Msa1218710:CDS | 40.0% | |
| ! | GTGACCCTTTATCTAGGATT+AGG | + | chr8_1:81347405-81347424 | Msa1218710:CDS | 40.0% |
| ACACACCAACATAACACGAA+GGG | - | chr8_1:81347438-81347457 | None:intergenic | 40.0% | |
| TACACACCAACATAACACGA+AGG | - | chr8_1:81347439-81347458 | None:intergenic | 40.0% | |
| AGCTGAGATGGTTGAAAACA+AGG | + | chr8_1:81347614-81347633 | Msa1218710:CDS | 40.0% | |
| GTTGAAAACAAGGAGCTTGT+TGG | + | chr8_1:81347624-81347643 | Msa1218710:CDS | 40.0% | |
| !! | GAGCTTGTTGGAGTTGTTAA+AGG | + | chr8_1:81347636-81347655 | Msa1218710:CDS | 40.0% |
| ! | AAAAGTGTGCAAACTCCTTC+TGG | + | chr8_1:81347666-81347685 | Msa1218710:CDS | 40.0% |
| ATCTTGAAGAGTGATCCAGA+AGG | - | chr8_1:81347684-81347703 | None:intergenic | 40.0% | |
| TTCTGGATCACTCTTCAAGA+TGG | + | chr8_1:81347683-81347702 | Msa1218710:CDS | 40.0% | |
| TCTGGATCACTCTTCAAGAT+GGG | + | chr8_1:81347684-81347703 | Msa1218710:CDS | 40.0% | |
| TGTGTATAGGAGAGACTCTA+AGG | - | chr8_1:81347722-81347741 | None:intergenic | 40.0% | |
| TTAGAGTCTCTCCTATACAC+AGG | + | chr8_1:81347721-81347740 | Msa1218710:CDS | 40.0% | |
| CTGCGACCACTAAAATAGTT+AGG | - | chr8_1:81347885-81347904 | None:intergenic | 40.0% | |
| TAGCATCCACTCTTCAATTG+AGG | - | chr8_1:81348033-81348052 | None:intergenic | 40.0% | |
| GAAGAGTGGATGCTAAGAAA+TGG | + | chr8_1:81348038-81348057 | Msa1218710:CDS | 40.0% | |
| ! | ATTCTTTTCTGTGGCTAGGA+AGG | - | chr8_1:81348075-81348094 | None:intergenic | 40.0% |
| TTTGTTGGGAAACTAGTTGG+TGG | - | chr8_1:81348173-81348192 | None:intergenic | 40.0% | |
| !! | TGGTTTGTTGGGAAACTAGT+TGG | - | chr8_1:81348176-81348195 | None:intergenic | 40.0% |
| CTCAAAGAAAAACTCAGCCT+AGG | + | chr8_1:81348308-81348327 | Msa1218710:CDS | 40.0% | |
| AAAAACTCAGCCTAGGAACT+TGG | + | chr8_1:81348315-81348334 | Msa1218710:CDS | 40.0% | |
| AAAACTCAGCCTAGGAACTT+GGG | + | chr8_1:81348316-81348335 | Msa1218710:CDS | 40.0% | |
| TCTTTATGGACTTCATGGAG+AGG | + | chr8_1:81348598-81348617 | Msa1218710:CDS | 40.0% | |
| CTTTATGGACTTCATGGAGA+GGG | + | chr8_1:81348599-81348618 | Msa1218710:CDS | 40.0% | |
| GGCTAATGGAATCAATATGG+AGG | + | chr8_1:81348636-81348655 | Msa1218710:CDS | 40.0% | |
| TGAGGAACATGGTTTACAAG+TGG | - | chr8_1:81348731-81348750 | None:intergenic | 40.0% | |
| ! | GGAATGTGTTTGTTGATCCT+AGG | + | chr8_1:81348858-81348877 | Msa1218710:CDS | 40.0% |
| CACATACAGTATAGAGAGCG+AGG | + | chr8_1:81347256-81347275 | Msa1218710:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | + | chr8_1:81347430-81347449 | Msa1218710:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | - | chr8_1:81347437-81347456 | None:intergenic | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | + | chr8_1:81347590-81347609 | Msa1218710:intron | 45.0% | |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | - | chr8_1:81348169-81348188 | None:intergenic | 45.0% |
| GTCGCATGAAGAAACCTAAG+TGG | - | chr8_1:81348494-81348513 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | + | chr8_1:81348633-81348652 | Msa1218710:CDS | 45.0% |
| GAGGTGATGAAGAGACAACT+CGG | + | chr8_1:81348836-81348855 | Msa1218710:CDS | 45.0% | |
| AGGTGATGAAGAGACAACTC+GGG | + | chr8_1:81348837-81348856 | Msa1218710:CDS | 45.0% | |
| CACATACAGTATAGAGAGCG+AGG | + | chr8_1:81347256-81347275 | Msa1218710:CDS | 45.0% | |
| CTATCCCCTTCGTGTTATGT+TGG | + | chr8_1:81347430-81347449 | Msa1218710:CDS | 45.0% | |
| CACACCAACATAACACGAAG+GGG | - | chr8_1:81347437-81347456 | None:intergenic | 45.0% | |
| GATGATACATAATGGCCTGC+AGG | + | chr8_1:81347590-81347609 | Msa1218710:intron | 45.0% | |
| !! | TTGGGAAACTAGTTGGTGGA+TGG | - | chr8_1:81348169-81348188 | None:intergenic | 45.0% |
| GTCGCATGAAGAAACCTAAG+TGG | - | chr8_1:81348494-81348513 | None:intergenic | 45.0% | |
| ! | GCGGGCTAATGGAATCAATA+TGG | + | chr8_1:81348633-81348652 | Msa1218710:CDS | 45.0% |
| GAGGTGATGAAGAGACAACT+CGG | + | chr8_1:81348836-81348855 | Msa1218710:CDS | 45.0% | |
| AGGTGATGAAGAGACAACTC+GGG | + | chr8_1:81348837-81348856 | Msa1218710:CDS | 45.0% | |
| CATGGAGAGGGAGAGAATCT+TGG | + | chr8_1:81348611-81348630 | Msa1218710:CDS | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | + | chr8_1:81348622-81348641 | Msa1218710:CDS | 50.0% |
| CATGGAGAGGGAGAGAATCT+TGG | + | chr8_1:81348611-81348630 | Msa1218710:CDS | 50.0% | |
| !! | AGAGAATCTTGGCGGGCTAA+TGG | + | chr8_1:81348622-81348641 | Msa1218710:CDS | 50.0% |
| ! | GAGACGTTAAAGTGGTGGGG+AGG | + | chr8_1:81347306-81347325 | Msa1218710:CDS | 55.0% |
| CAACCATCTCAGCTACCTGC+AGG | - | chr8_1:81347608-81347627 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | + | chr8_1:81347993-81348012 | Msa1218710:intron | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | + | chr8_1:81348614-81348633 | Msa1218710:CDS | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | + | chr8_1:81348615-81348634 | Msa1218710:CDS | 55.0% | |
| ! | GAGACGTTAAAGTGGTGGGG+AGG | + | chr8_1:81347306-81347325 | Msa1218710:CDS | 55.0% |
| CAACCATCTCAGCTACCTGC+AGG | - | chr8_1:81347608-81347627 | None:intergenic | 55.0% | |
| CTGTGCAGGAGAAAGGGAGT+TGG | + | chr8_1:81347993-81348012 | Msa1218710:intron | 55.0% | |
| GGAGAGGGAGAGAATCTTGG+CGG | + | chr8_1:81348614-81348633 | Msa1218710:CDS | 55.0% | |
| GAGAGGGAGAGAATCTTGGC+GGG | + | chr8_1:81348615-81348634 | Msa1218710:CDS | 55.0% | |
| TGGCCTGCAGGTAGCTGAGA+TGG | + | chr8_1:81347602-81347621 | Msa1218710:intron | 60.0% | |
| TGGCCTGCAGGTAGCTGAGA+TGG | + | chr8_1:81347602-81347621 | Msa1218710:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 81347248 | 81348889 | 81347248 | ID=Msa1218710;Name=Msa1218710 |
| chr8_1 | mRNA | 81347248 | 81348889 | 81347248 | ID=Msa1218710-mRNA-1;Parent=Msa1218710;Name=Msa1218710-mRNA-1;_AED=0.01;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|407 |
| chr8_1 | exon | 81347248 | 81347451 | 81347248 | ID=Msa1218710-mRNA-1:exon:28749;Parent=Msa1218710-mRNA-1 |
| chr8_1 | exon | 81347612 | 81347742 | 81347612 | ID=Msa1218710-mRNA-1:exon:28750;Parent=Msa1218710-mRNA-1 |
| chr8_1 | exon | 81348001 | 81348889 | 81348001 | ID=Msa1218710-mRNA-1:exon:28751;Parent=Msa1218710-mRNA-1 |
| chr8_1 | CDS | 81347248 | 81347451 | 81347248 | ID=Msa1218710-mRNA-1:cds;Parent=Msa1218710-mRNA-1 |
| chr8_1 | CDS | 81347612 | 81347742 | 81347612 | ID=Msa1218710-mRNA-1:cds;Parent=Msa1218710-mRNA-1 |
| chr8_1 | CDS | 81348001 | 81348889 | 81348001 | ID=Msa1218710-mRNA-1:cds;Parent=Msa1218710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
