Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220340 | XP_013458483.1 | 97.683 | 518 | 12 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1046 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220340 | sp|Q9LTS3|CKX3_ARATH | 51.406 | 498 | 231 | 4 | 23 | 517 | 28 | 517 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220340 | A0A072URS8 | 97.683 | 518 | 12 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1046 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422650 | Msa1220340 | 0.800698 | 1.275574e-48 | -8.615850e-47 |
| Msa0422740 | Msa1220340 | 0.804384 | 2.216396e-49 | -8.615850e-47 |
| Msa0422960 | Msa1220340 | 0.801378 | 9.260289e-49 | -8.615850e-47 |
| Msa1220340 | Msa1303400 | 0.831375 | 1.729749e-55 | -8.615850e-47 |
| Msa0514750 | Msa1220340 | 0.808970 | 2.384295e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220340 | MtrunA17_Chr4g0071121 | 97.683 | 518 | 12 | 0 | 1 | 518 | 1 | 518 | 0.0 | 1046 |
| Msa1220340 | MtrunA17_Chr4g0071111 | 56.203 | 532 | 213 | 5 | 1 | 518 | 1 | 526 | 0.0 | 613 |
| Msa1220340 | MtrunA17_Chr2g0299371 | 56.615 | 514 | 201 | 6 | 26 | 518 | 26 | 538 | 0.0 | 583 |
| Msa1220340 | MtrunA17_Chr3g0141981 | 50.932 | 483 | 223 | 7 | 44 | 518 | 47 | 523 | 4.62e-168 | 486 |
| Msa1220340 | MtrunA17_Chr3g0091141 | 45.019 | 522 | 264 | 10 | 5 | 518 | 35 | 541 | 6.53e-153 | 447 |
| Msa1220340 | MtrunA17_Chr2g0299361 | 62.776 | 317 | 102 | 2 | 202 | 517 | 9 | 310 | 5.65e-152 | 436 |
| Msa1220340 | MtrunA17_Chr4g0020621 | 47.023 | 487 | 233 | 10 | 44 | 517 | 47 | 521 | 1.97e-149 | 438 |
| Msa1220340 | MtrunA17_Chr7g0257061 | 46.008 | 476 | 233 | 8 | 54 | 517 | 73 | 536 | 1.97e-146 | 431 |
| Msa1220340 | MtrunA17_Chr1g0150941 | 42.324 | 482 | 251 | 13 | 52 | 518 | 35 | 504 | 1.08e-121 | 366 |
| Msa1220340 | MtrunA17_Chr2g0299351 | 61.386 | 202 | 68 | 2 | 9 | 202 | 6 | 205 | 3.82e-73 | 232 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220340 | AT5G56970.1 | 51.406 | 498 | 231 | 4 | 23 | 517 | 28 | 517 | 0.0 | 527 |
| Msa1220340 | AT4G29740.2 | 50.823 | 486 | 219 | 4 | 47 | 518 | 45 | 524 | 1.93e-177 | 509 |
| Msa1220340 | AT2G19500.1 | 49.489 | 489 | 230 | 4 | 34 | 517 | 25 | 501 | 1.39e-174 | 501 |
| Msa1220340 | AT1G75450.1 | 48.303 | 501 | 232 | 9 | 36 | 517 | 28 | 520 | 7.05e-165 | 478 |
| Msa1220340 | AT1G75450.2 | 48.207 | 502 | 232 | 10 | 36 | 517 | 24 | 517 | 7.39e-163 | 473 |
| Msa1220340 | AT3G63440.1 | 47.589 | 477 | 229 | 8 | 54 | 518 | 60 | 527 | 3.58e-150 | 441 |
| Msa1220340 | AT2G41510.1 | 45.912 | 477 | 230 | 8 | 55 | 517 | 77 | 539 | 2.53e-146 | 432 |
| Msa1220340 | AT2G41510.2 | 46.203 | 474 | 233 | 7 | 55 | 517 | 139 | 601 | 1.23e-145 | 432 |
| Msa1220340 | AT4G29740.1 | 52.564 | 390 | 166 | 3 | 47 | 423 | 45 | 428 | 1.72e-142 | 417 |
| Msa1220340 | AT5G56970.2 | 51.733 | 404 | 184 | 4 | 23 | 423 | 28 | 423 | 2.48e-142 | 416 |
| Msa1220340 | AT5G21482.1 | 44.124 | 485 | 240 | 12 | 53 | 518 | 49 | 521 | 7.29e-128 | 383 |
| Msa1220340 | AT2G41510.3 | 46.702 | 379 | 179 | 7 | 54 | 423 | 76 | 440 | 1.41e-112 | 341 |
| Msa1220340 | AT4G29740.3 | 52.769 | 307 | 126 | 3 | 47 | 340 | 45 | 345 | 2.60e-106 | 322 |
Find 114 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAACTGGGTTTGATAATT+TGG | 0.172846 | 8_1:+83484800 | Msa1220340:CDS |
| ATTCTTCATGTGTTCTGTTT+AGG | 0.174158 | 8_1:-83484899 | None:intergenic |
| TCACTAGCCTCAACCGATTT+TGG | 0.182190 | 8_1:+83479875 | Msa1220340:CDS |
| CCTCTTGCTGCTATAGTAAA+AGG | 0.182887 | 8_1:-83479992 | None:intergenic |
| AGAGTTATCGTCGTAATATT+TGG | 0.224291 | 8_1:-83484206 | None:intergenic |
| AATAATGAGCTTAGAAATAA+TGG | 0.225918 | 8_1:+83480082 | Msa1220340:CDS |
| ATGCGAGGTTGATCAATTTC+TGG | 0.237168 | 8_1:-83484136 | None:intergenic |
| TTCTTCATGTGTTCTGTTTA+GGG | 0.237319 | 8_1:-83484898 | None:intergenic |
| TCAATGAAATTAAATGTTCT+TGG | 0.243318 | 8_1:-83484030 | None:intergenic |
| AAGGACTTACACCACTTTCT+TGG | 0.249326 | 8_1:+83480188 | Msa1220340:CDS |
| GGGCAAGGGCATTCAGTTAA+TGG | 0.292683 | 8_1:+83480013 | Msa1220340:CDS |
| ACTTACTTTGTTCGGTTCAT+TGG | 0.299489 | 8_1:-83484640 | None:intergenic |
| TGATGTAGATTATGCCATAT+TGG | 0.306461 | 8_1:-83484174 | None:intergenic |
| CATGAATTGGATGTTGTTAC+TGG | 0.312954 | 8_1:+83480304 | Msa1220340:CDS |
| AATTTCCAATGTTCATGAAT+TGG | 0.316418 | 8_1:+83480291 | Msa1220340:CDS |
| TGGTTAGACCTATTTGTTCC+AGG | 0.317776 | 8_1:+83484532 | Msa1220340:CDS |
| ACGTAGAAAATTTCTTCATT+AGG | 0.319059 | 8_1:-83484762 | None:intergenic |
| CACTAAGGGCACAAGGGCTT+TGG | 0.322463 | 8_1:+83484494 | Msa1220340:CDS |
| GAACATTTAATTTCATTGAA+TGG | 0.325711 | 8_1:+83484034 | Msa1220340:CDS |
| GACTGATTATTTGTATTTAT+CGG | 0.326686 | 8_1:+83480210 | Msa1220340:CDS |
| CTTGGAGGTCTAGGTCAGTT+TGG | 0.330433 | 8_1:+83483571 | Msa1220340:CDS |
| TTGGAGGTCTAGGTCAGTTT+GGG | 0.339795 | 8_1:+83483572 | Msa1220340:CDS |
| CTCTCTAATGCTGGTATTAG+TGG | 0.353843 | 8_1:+83480244 | Msa1220340:CDS |
| TACAGAATTGCAATATTTGT+TGG | 0.363574 | 8_1:-83484842 | None:intergenic |
| AGCATTTGGAGGATTTCTTT+TGG | 0.368836 | 8_1:-83479830 | None:intergenic |
| AATGCACCCAATTATGTAGA+AGG | 0.379731 | 8_1:+83484070 | Msa1220340:CDS |
| CCCTCTTGGGTGCAGGTCCA+AGG | 0.382334 | 8_1:-83483618 | None:intergenic |
| ACTTCCTTGGTAAACCAATA+TGG | 0.384782 | 8_1:+83484160 | Msa1220340:CDS |
| TCTCAAAAGTATTCCATTTG+AGG | 0.386197 | 8_1:-83484938 | None:intergenic |
| AGTGGACAAAGCTTCCGATT+TGG | 0.397065 | 8_1:+83480262 | Msa1220340:CDS |
| GAAGAATGGGTGGAACAATA+TGG | 0.397648 | 8_1:+83484915 | Msa1220340:CDS |
| CTTACTTTGTTCGGTTCATT+GGG | 0.402378 | 8_1:-83484639 | None:intergenic |
| CGGGGTCACGACTAAGCATT+TGG | 0.404940 | 8_1:-83479844 | None:intergenic |
| GTCCAAGGGCTATTCTTGCC+CGG | 0.409954 | 8_1:-83483603 | None:intergenic |
| GAACATGTTACTTACCCTCT+TGG | 0.415859 | 8_1:-83483632 | None:intergenic |
| CTCTCAAGATCATGTTGATC+AGG | 0.418087 | 8_1:+83484225 | Msa1220340:CDS |
| TATGCGGTTCTTGGAGGTCT+AGG | 0.425284 | 8_1:+83483562 | Msa1220340:CDS |
| ACTAAGGGCACAAGGGCTTT+GGG | 0.426367 | 8_1:+83484495 | Msa1220340:CDS |
| TTGCATGCAAGCCTTGAAAA+AGG | 0.427576 | 8_1:+83480169 | Msa1220340:CDS |
| GTGAATTATGTGGCCAAAAT+CGG | 0.429011 | 8_1:-83479888 | None:intergenic |
| TCATGAACATTGGAAATTTG+AGG | 0.429894 | 8_1:-83480286 | None:intergenic |
| GGACAATCCATGACAAATGA+TGG | 0.430303 | 8_1:+83480034 | Msa1220340:CDS |
| TTACTTACCCTCTTGGGTGC+AGG | 0.435135 | 8_1:-83483625 | None:intergenic |
| ACAAATATTGCAATTCTGTA+AGG | 0.447727 | 8_1:+83484845 | Msa1220340:CDS |
| GATATGTCATTAATAGAAGA+TGG | 0.452766 | 8_1:-83479935 | None:intergenic |
| TTTGGGATATCCCACATCCT+TGG | 0.453084 | 8_1:+83484512 | Msa1220340:CDS |
| TGGAAATTTGAGGACCAAAT+CGG | 0.455857 | 8_1:-83480276 | None:intergenic |
| AATTCAGACATTCTAGATCC+TGG | 0.456400 | 8_1:-83484550 | None:intergenic |
| TGGAACAATATGGCCTCAAA+TGG | 0.459939 | 8_1:+83484925 | Msa1220340:CDS |
| ATCGGTTGAGGCTAGTGAAA+TGG | 0.462882 | 8_1:-83479870 | None:intergenic |
| GATTATTTGTATTTATCGGT+TGG | 0.468139 | 8_1:+83480214 | Msa1220340:CDS |
| TAAACAGAACACATGAAGAA+TGG | 0.476873 | 8_1:+83484901 | Msa1220340:CDS |
| CCAAATAAAATATTGTCACC+TGG | 0.478461 | 8_1:+83484981 | Msa1220340:CDS |
| AGAAGTCGTTGTAAAGTAAA+CGG | 0.480233 | 8_1:-83483991 | None:intergenic |
| AACATGTTACTTACCCTCTT+GGG | 0.481521 | 8_1:-83483631 | None:intergenic |
| ATTTAATGAAGGTGTGTTCA+AGG | 0.481817 | 8_1:+83484570 | Msa1220340:CDS |
| TTCTAGATCCTGGAACAAAT+AGG | 0.484678 | 8_1:-83484540 | None:intergenic |
| TTAATTTCTTGTAGGTAAAG+TGG | 0.485135 | 8_1:+83483966 | Msa1220340:intron |
| ATAATGAGCTTAGAAATAAT+GGG | 0.488294 | 8_1:+83480083 | Msa1220340:CDS |
| TCAACCTCGCATAACTTCCT+TGG | 0.491369 | 8_1:+83484147 | Msa1220340:CDS |
| GAGCTTAGAAATAATGGGAA+TGG | 0.498772 | 8_1:+83480088 | Msa1220340:CDS |
| AAACAGAACACATGAAGAAT+GGG | 0.503138 | 8_1:+83484902 | Msa1220340:CDS |
| AATAGGTCTAACCAAGGATG+TGG | 0.503374 | 8_1:-83484523 | None:intergenic |
| CTCTTGCTGCTATAGTAAAA+GGG | 0.503657 | 8_1:-83479991 | None:intergenic |
| TATTTGTATTTATCGGTTGG+TGG | 0.507411 | 8_1:+83480217 | Msa1220340:CDS |
| AACATCCAATTCATGAACAT+TGG | 0.509585 | 8_1:-83480296 | None:intergenic |
| CACAATCCCATCATTTGTCA+TGG | 0.510884 | 8_1:-83480041 | None:intergenic |
| GGTGGAACTCTCTCTAATGC+TGG | 0.515636 | 8_1:+83480235 | Msa1220340:CDS |
| ACTATAGCAGCAAGAGGGCA+AGG | 0.517048 | 8_1:+83479998 | Msa1220340:CDS |
| TCCAAGGGCTATTCTTGCCC+GGG | 0.517061 | 8_1:-83483602 | None:intergenic |
| CTTAAACAAAACATTACCGC+TGG | 0.517824 | 8_1:+83484601 | Msa1220340:CDS |
| AACTGGGTTTGATAATTTGG+AGG | 0.517975 | 8_1:+83484803 | Msa1220340:CDS |
| AAAATATTGTCACCTGGGCA+AGG | 0.519413 | 8_1:+83484987 | Msa1220340:CDS |
| TTTCATAGGGAAAGGAGACT+TGG | 0.523319 | 8_1:+83483504 | Msa1220340:intron |
| CCTCTTGGGTGCAGGTCCAA+GGG | 0.523745 | 8_1:-83483617 | None:intergenic |
| AAATAATCAGTCCAAGAAAG+TGG | 0.540656 | 8_1:-83480199 | None:intergenic |
| GTCAGTTTGGGATTATAACC+CGG | 0.542914 | 8_1:+83483584 | Msa1220340:CDS |
| CAAATAAAATATTGTCACCT+GGG | 0.545989 | 8_1:+83484982 | Msa1220340:CDS |
| GATAAATATGTAGATGTTGG+TGG | 0.546726 | 8_1:+83480124 | Msa1220340:CDS |
| TCAGTTTGGGATTATAACCC+GGG | 0.547378 | 8_1:+83483585 | Msa1220340:CDS |
| TCTTCATGTGTTCTGTTTAG+GGG | 0.551746 | 8_1:-83484897 | None:intergenic |
| GAGGCTAGTGAAATGGTCAC+GGG | 0.552141 | 8_1:-83479863 | None:intergenic |
| AGAATGTCTGAATTTAATGA+AGG | 0.553370 | 8_1:+83484559 | Msa1220340:CDS |
| TTTAATGAAGGTGTGTTCAA+GGG | 0.557994 | 8_1:+83484571 | Msa1220340:CDS |
| GCTGCTATAGTAAAAGGGAT+AGG | 0.561618 | 8_1:-83479986 | None:intergenic |
| TTTGATAAATATGTAGATGT+TGG | 0.561969 | 8_1:+83480121 | Msa1220340:CDS |
| TAGTTGAAAATCCCTTGCCC+AGG | 0.563819 | 8_1:-83484999 | None:intergenic |
| ACCCGGGCAAGAATAGCCCT+TGG | 0.563941 | 8_1:+83483601 | Msa1220340:CDS |
| GACAATCCATGACAAATGAT+GGG | 0.567061 | 8_1:+83480035 | Msa1220340:CDS |
| CCTTGGACCTGCACCCAAGA+GGG | 0.567177 | 8_1:+83483618 | Msa1220340:CDS |
| AAATATTGTCACCTGGGCAA+GGG | 0.572624 | 8_1:+83484988 | Msa1220340:CDS |
| TGAGGCTAGTGAAATGGTCA+CGG | 0.586140 | 8_1:-83479864 | None:intergenic |
| AACAAGCACAACTACAACCA+TGG | 0.591747 | 8_1:+83479792 | Msa1220340:CDS |
| TACTGATGAGCTAACACTAA+GGG | 0.595369 | 8_1:+83484480 | Msa1220340:CDS |
| TTGCAATTCTGTAAGGATGT+CGG | 0.599370 | 8_1:+83484852 | Msa1220340:CDS |
| CAGAACACATGAAGAATGGG+TGG | 0.600011 | 8_1:+83484905 | Msa1220340:CDS |
| AAAGTTAATAAACTATGGCA+AGG | 0.605305 | 8_1:+83479708 | None:intergenic |
| AAATATGTAGATGTTGGTGG+TGG | 0.607390 | 8_1:+83480127 | Msa1220340:CDS |
| GGTGCATCTAGGGGTGACCA+TGG | 0.610908 | 8_1:-83479809 | None:intergenic |
| ATACTGATGAGCTAACACTA+AGG | 0.611848 | 8_1:+83484479 | Msa1220340:CDS |
| GAGCTAACACTAAGGGCACA+AGG | 0.614915 | 8_1:+83484487 | Msa1220340:CDS |
| GGTCACGACTAAGCATTTGG+AGG | 0.616476 | 8_1:-83479841 | None:intergenic |
| CTATAGCAGCAAGAGGGCAA+GGG | 0.617692 | 8_1:+83479999 | Msa1220340:CDS |
| CATGACAAATGATGGGATTG+TGG | 0.622617 | 8_1:+83480042 | Msa1220340:CDS |
| CCCTTGGACCTGCACCCAAG+AGG | 0.636080 | 8_1:+83483617 | Msa1220340:CDS |
| TATGCCATATTGGTTTACCA+AGG | 0.647993 | 8_1:-83484164 | None:intergenic |
| AGCTAACACTAAGGGCACAA+GGG | 0.649584 | 8_1:+83484488 | Msa1220340:CDS |
| ATAGGTCTAACCAAGGATGT+GGG | 0.663453 | 8_1:-83484522 | None:intergenic |
| TATGTGGCCAAAATCGGTTG+AGG | 0.666331 | 8_1:-83479882 | None:intergenic |
| GGAACAAATAGGTCTAACCA+AGG | 0.693806 | 8_1:-83484529 | None:intergenic |
| TTTACCAAGGAAGTTATGCG+AGG | 0.707702 | 8_1:-83484151 | None:intergenic |
| AGGCTAGTGAAATGGTCACG+GGG | 0.748023 | 8_1:-83479862 | None:intergenic |
| GTACACTATTACAAGTCCAG+CGG | 0.753165 | 8_1:-83484617 | None:intergenic |
| ATGTTGGTGGTGGACAACGT+TGG | 0.759382 | 8_1:+83480137 | Msa1220340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAACTATATATTTTTTTCT+GGG | - | chr8_1:83480807-83480826 | None:intergenic | 10.0% |
| !!! | TAAAACTATATATTTTTTTC+TGG | - | chr8_1:83480808-83480827 | None:intergenic | 10.0% |
| !! | AAAAAAAACTGTTTAATAAT+AGG | + | chr8_1:83480836-83480855 | Msa1220340:intron | 10.0% |
| !! | ATATTGTATTAATATTATAC+GGG | + | chr8_1:83480986-83481005 | Msa1220340:intron | 10.0% |
| !!! | CTATTCTATTTTATTTTTTT+TGG | + | chr8_1:83481011-83481030 | Msa1220340:intron | 10.0% |
| !!! | TAGTCATATATTTTATATAA+TGG | + | chr8_1:83481900-83481919 | Msa1220340:intron | 10.0% |
| !!! | TTATAAGATGATTTTTTTTT+TGG | + | chr8_1:83482183-83482202 | Msa1220340:intron | 10.0% |
| !!! | TATAAGATGATTTTTTTTTT+GGG | + | chr8_1:83482184-83482203 | Msa1220340:intron | 10.0% |
| !! | CATATTATATATAAAGTTTA+TGG | + | chr8_1:83482941-83482960 | Msa1220340:intron | 10.0% |
| !!! | TGAAAATAAACTTTTTTTAA+AGG | + | chr8_1:83483361-83483380 | Msa1220340:intron | 10.0% |
| !! | AAAGAATTTACAAAAATTTA+AGG | - | chr8_1:83483901-83483920 | None:intergenic | 10.0% |
| !!! | TTTAATCAGTAATTTAATTT+AGG | - | chr8_1:83483935-83483954 | None:intergenic | 10.0% |
| !!! | CAAATTTTATTAGTTTAGAT+TGG | + | chr8_1:83480457-83480476 | Msa1220340:intron | 15.0% |
| !!! | CAAATTATTTTTTTACTTGT+GGG | - | chr8_1:83480685-83480704 | None:intergenic | 15.0% |
| !!! | TCAAATTATTTTTTTACTTG+TGG | - | chr8_1:83480686-83480705 | None:intergenic | 15.0% |
| !!! | AAACTATATATTTTTTTCTG+GGG | - | chr8_1:83480806-83480825 | None:intergenic | 15.0% |
| !!! | TTAATACAATATTTTTCTGT+TGG | + | chr8_1:83480895-83480914 | Msa1220340:intron | 15.0% |
| !! | ATATACAAATTAAAATGTGA+TGG | + | chr8_1:83481462-83481481 | Msa1220340:intron | 15.0% |
| !! | TGTCATTAAAAATTTATGTA+TGG | + | chr8_1:83481722-83481741 | Msa1220340:intron | 15.0% |
| !! | GTCATTAAAAATTTATGTAT+GGG | + | chr8_1:83481723-83481742 | Msa1220340:intron | 15.0% |
| !! | TCATTAAAAATTTATGTATG+GGG | + | chr8_1:83481724-83481743 | Msa1220340:intron | 15.0% |
| !!! | GGGATTAATAATTATTTTTT+TGG | + | chr8_1:83481745-83481764 | Msa1220340:intron | 15.0% |
| !!! | AAATTTTGTTCTTTTTCTTT+AGG | - | chr8_1:83482005-83482024 | None:intergenic | 15.0% |
| !!! | ACTCAAAATATTTTATCTAA+TGG | + | chr8_1:83482801-83482820 | Msa1220340:intron | 15.0% |
| !! | TATACTTTGAATTAATTCAT+AGG | + | chr8_1:83484712-83484731 | Msa1220340:intron | 15.0% |
| !! | AATAATGAGCTTAGAAATAA+TGG | + | chr8_1:83480082-83480101 | Msa1220340:CDS | 20.0% |
| !! | ATAATGAGCTTAGAAATAAT+GGG | + | chr8_1:83480083-83480102 | Msa1220340:CDS | 20.0% |
| !! | TTTGATAAATATGTAGATGT+TGG | + | chr8_1:83480121-83480140 | Msa1220340:CDS | 20.0% |
| !! | GACTGATTATTTGTATTTAT+CGG | + | chr8_1:83480210-83480229 | Msa1220340:CDS | 20.0% |
| !!! | GTTATTGATAATGATAGATT+AGG | + | chr8_1:83480396-83480415 | Msa1220340:intron | 20.0% |
| !!! | AACTATATATTTTTTTCTGG+GGG | - | chr8_1:83480805-83480824 | None:intergenic | 20.0% |
| !! | AAAACTGTTTAATAATAGGA+TGG | + | chr8_1:83480840-83480859 | Msa1220340:intron | 20.0% |
| !! | TTAATAATAGGATGGATAAA+TGG | + | chr8_1:83480848-83480867 | Msa1220340:intron | 20.0% |
| !! | TTAATATTGATCCATGTAAT+TGG | - | chr8_1:83480879-83480898 | None:intergenic | 20.0% |
| !! | TCTTTATAAAACCAGTTATA+AGG | + | chr8_1:83481043-83481062 | Msa1220340:intron | 20.0% |
| !!! | ATTTTATGTGTGAATATAAG+TGG | + | chr8_1:83481168-83481187 | Msa1220340:intron | 20.0% |
| !! | AAGAATTTATTAAGCTATCT+TGG | + | chr8_1:83481636-83481655 | Msa1220340:intron | 20.0% |
| !! | CATTAAAAATTTATGTATGG+GGG | + | chr8_1:83481725-83481744 | Msa1220340:intron | 20.0% |
| !!! | AGAACAAAATTTGTTCTTAA+AGG | + | chr8_1:83482013-83482032 | Msa1220340:intron | 20.0% |
| !!! | TATTTGCTAGTATTTTGTTA+TGG | + | chr8_1:83482262-83482281 | Msa1220340:intron | 20.0% |
| !! | TTCAATCCAACAAATTAAAA+TGG | + | chr8_1:83482416-83482435 | Msa1220340:intron | 20.0% |
| !!! | AGATAAATAAGTAAAGTGTT+TGG | - | chr8_1:83482975-83482994 | None:intergenic | 20.0% |
| !! | CATCAACATAGAAAATATAT+TGG | - | chr8_1:83483110-83483129 | None:intergenic | 20.0% |
| !!! | CAATATATTTTCTATGTTGA+TGG | + | chr8_1:83483108-83483127 | Msa1220340:intron | 20.0% |
| !!! | ATAACAAAATACAGGTTTTT+TGG | + | chr8_1:83483312-83483331 | Msa1220340:intron | 20.0% |
| !! | TTGTTTGATTAATTTCTTGT+AGG | + | chr8_1:83483958-83483977 | Msa1220340:intron | 20.0% |
| !! | TCAATGAAATTAAATGTTCT+TGG | - | chr8_1:83484033-83484052 | None:intergenic | 20.0% |
| !!! | GAACATTTAATTTCATTGAA+TGG | + | chr8_1:83484034-83484053 | Msa1220340:CDS | 20.0% |
| !! | AAAAAACCTTCTACATAATT+GGG | - | chr8_1:83484079-83484098 | None:intergenic | 20.0% |
| !!! | CTTTTTCGAATTTAAAAGTA+GGG | - | chr8_1:83484426-83484445 | None:intergenic | 20.0% |
| !!! | TCTTTTTCGAATTTAAAAGT+AGG | - | chr8_1:83484427-83484446 | None:intergenic | 20.0% |
| !!! | TTTTCAAAACTTACTTTGTT+CGG | - | chr8_1:83484651-83484670 | None:intergenic | 20.0% |
| ! | GATATGTCATTAATAGAAGA+TGG | - | chr8_1:83479938-83479957 | None:intergenic | 25.0% |
| ! | GATTATTTGTATTTATCGGT+TGG | + | chr8_1:83480214-83480233 | Msa1220340:CDS | 25.0% |
| ! | AATTTCCAATGTTCATGAAT+TGG | + | chr8_1:83480291-83480310 | Msa1220340:CDS | 25.0% |
| !!! | TTGATAATGATAGATTAGGT+TGG | + | chr8_1:83480400-83480419 | Msa1220340:intron | 25.0% |
| !! | TGATAATGATAGATTAGGTT+GGG | + | chr8_1:83480401-83480420 | Msa1220340:intron | 25.0% |
| ! | TAACATGTTTATCATTGGAT+TGG | - | chr8_1:83480517-83480536 | None:intergenic | 25.0% |
| ! | CAAACTAACATGTTTATCAT+TGG | - | chr8_1:83480522-83480541 | None:intergenic | 25.0% |
| !! | ATAAACATGTTAGTTTGAGT+CGG | + | chr8_1:83480525-83480544 | Msa1220340:intron | 25.0% |
| ! | TTCGTGAAAATTTAGCAATT+AGG | + | chr8_1:83480618-83480637 | Msa1220340:intron | 25.0% |
| !!! | ACAGTTTTTTTCGAAATACA+TGG | - | chr8_1:83480922-83480941 | None:intergenic | 25.0% |
| !!! | GTATTCATTGTTTTACAAGT+CGG | - | chr8_1:83481264-83481283 | None:intergenic | 25.0% |
| !! | TTTTATCCGTAATTTCCAAT+AGG | + | chr8_1:83481314-83481333 | Msa1220340:intron | 25.0% |
| !!! | AATTAAAATGTGATGGACAT+TGG | + | chr8_1:83481469-83481488 | Msa1220340:intron | 25.0% |
| ! | TGAGTAATACTATAACAACA+AGG | + | chr8_1:83481566-83481585 | Msa1220340:intron | 25.0% |
| ! | ACAAGGAAAATAAGAGAAAT+TGG | + | chr8_1:83481583-83481602 | Msa1220340:intron | 25.0% |
| ! | AAATATATGACTATGACGAA+TGG | - | chr8_1:83481893-83481912 | None:intergenic | 25.0% |
| ! | TTCTATAAGATTCTTAAGTC+CGG | + | chr8_1:83482087-83482106 | Msa1220340:intron | 25.0% |
| ! | TATAAGTAAAGTAAAGAGTC+TGG | - | chr8_1:83482137-83482156 | None:intergenic | 25.0% |
| !!! | AAGATGATTTTTTTTTTGGG+TGG | + | chr8_1:83482187-83482206 | Msa1220340:intron | 25.0% |
| !!! | TGCTAGTATTTGTTTTTTGA+AGG | + | chr8_1:83482235-83482254 | Msa1220340:intron | 25.0% |
| !!! | GCTAGTATTTGTTTTTTGAA+GGG | + | chr8_1:83482236-83482255 | Msa1220340:intron | 25.0% |
| ! | ATCGAGATTCAAATATTTGT+TGG | - | chr8_1:83482461-83482480 | None:intergenic | 25.0% |
| ! | ACAAATATTTGAATCTCGAT+TGG | + | chr8_1:83482461-83482480 | Msa1220340:intron | 25.0% |
| ! | CAAATATTTGAATCTCGATT+GGG | + | chr8_1:83482462-83482481 | Msa1220340:intron | 25.0% |
| ! | AGCTCAAAACACATTTAAAA+AGG | - | chr8_1:83482849-83482868 | None:intergenic | 25.0% |
| ! | GAGAATCTTAGATAAAAGTA+GGG | - | chr8_1:83482882-83482901 | None:intergenic | 25.0% |
| ! | AAGTTAAACTCAAATGAACA+TGG | - | chr8_1:83482904-83482923 | None:intergenic | 25.0% |
| ! | TCTTGCTTATTTATCTTAAG+AGG | + | chr8_1:83482992-83483011 | Msa1220340:intron | 25.0% |
| ! | GAAAATATATTGGAAACTGA+GGG | - | chr8_1:83483100-83483119 | None:intergenic | 25.0% |
| ! | AGAAAATATATTGGAAACTG+AGG | - | chr8_1:83483101-83483120 | None:intergenic | 25.0% |
| ! | TATACATTATATGGTGCAAT+TGG | + | chr8_1:83483165-83483184 | Msa1220340:intron | 25.0% |
| !!! | TTGGTGCTAAAATACATATA+TGG | + | chr8_1:83483184-83483203 | Msa1220340:intron | 25.0% |
| ! | CTGACAAAATAACAAAATAC+AGG | + | chr8_1:83483304-83483323 | Msa1220340:intron | 25.0% |
| !!! | TAGTCATTTTGTTGTTGTTA+AGG | - | chr8_1:83483473-83483492 | None:intergenic | 25.0% |
| ! | AACAAAATGACTAATTCCTT+TGG | + | chr8_1:83483480-83483499 | Msa1220340:intron | 25.0% |
| !!! | GAACTCAGAATTATTTTATG+CGG | + | chr8_1:83483546-83483565 | Msa1220340:CDS | 25.0% |
| ! | TTAATTTCTTGTAGGTAAAG+TGG | + | chr8_1:83483966-83483985 | Msa1220340:intron | 25.0% |
| ! | CAAAAAACCTTCTACATAAT+TGG | - | chr8_1:83484080-83484099 | None:intergenic | 25.0% |
| !! | TTGATCAATTTCTGGAAAAA+AGG | - | chr8_1:83484131-83484150 | None:intergenic | 25.0% |
| !!! | TATCGTTTTGTTTCTTGAAT+AGG | + | chr8_1:83484366-83484385 | Msa1220340:intron | 25.0% |
| !! | GAAATTGAAATTTTGCTTCA+GGG | + | chr8_1:83484388-83484407 | Msa1220340:CDS | 25.0% |
| ! | AGAATGTCTGAATTTAATGA+AGG | + | chr8_1:83484559-83484578 | Msa1220340:CDS | 25.0% |
| ! | ACTTTGAATTAATTCATAGG+TGG | + | chr8_1:83484715-83484734 | Msa1220340:intron | 25.0% |
| ! | CTTTGAATTAATTCATAGGT+GGG | + | chr8_1:83484716-83484735 | Msa1220340:intron | 25.0% |
| ! | ACGTAGAAAATTTCTTCATT+AGG | - | chr8_1:83484765-83484784 | None:intergenic | 25.0% |
| ! | TACAGAATTGCAATATTTGT+TGG | - | chr8_1:83484845-83484864 | None:intergenic | 25.0% |
| ! | ACAAATATTGCAATTCTGTA+AGG | + | chr8_1:83484845-83484864 | Msa1220340:CDS | 25.0% |
| ! | CAAATAAAATATTGTCACCT+GGG | + | chr8_1:83484982-83485001 | Msa1220340:CDS | 25.0% |
| !!! | TTTTCTAGTTTCGAAAGCTT+TGG | + | chr8_1:83479733-83479752 | Msa1220340:CDS | 30.0% |
| ! | CAAAAATTGCAAAAGGGTTT+TGG | - | chr8_1:83479913-83479932 | None:intergenic | 30.0% |
| ATGGTGCAAAAATTGCAAAA+GGG | - | chr8_1:83479919-83479938 | None:intergenic | 30.0% | |
| GATAAATATGTAGATGTTGG+TGG | + | chr8_1:83480124-83480143 | Msa1220340:CDS | 30.0% | |
| AAATAATCAGTCCAAGAAAG+TGG | - | chr8_1:83480202-83480221 | None:intergenic | 30.0% | |
| ! | TATTTGTATTTATCGGTTGG+TGG | + | chr8_1:83480217-83480236 | Msa1220340:CDS | 30.0% |
| TCATGAACATTGGAAATTTG+AGG | - | chr8_1:83480289-83480308 | None:intergenic | 30.0% | |
| AACATCCAATTCATGAACAT+TGG | - | chr8_1:83480299-83480318 | None:intergenic | 30.0% | |
| CTACAATAGGTGATGTATTT+AGG | + | chr8_1:83480374-83480393 | Msa1220340:intron | 30.0% | |
| AAATGGATCAACCAATTACA+TGG | + | chr8_1:83480865-83480884 | Msa1220340:intron | 30.0% | |
| TATGTGTGAATATAAGTGGT+TGG | + | chr8_1:83481172-83481191 | Msa1220340:intron | 30.0% | |
| GATATTAGAGTCGATTAATC+TGG | - | chr8_1:83481202-83481221 | None:intergenic | 30.0% | |
| ! | CAATAGGTTGGACAATAATT+GGG | + | chr8_1:83481330-83481349 | Msa1220340:intron | 30.0% |
| ! | AATAGGTTGGACAATAATTG+GGG | + | chr8_1:83481331-83481350 | Msa1220340:intron | 30.0% |
| TATCTGCAAAATCTTGACTA+GGG | - | chr8_1:83481445-83481464 | None:intergenic | 30.0% | |
| ATATCTGCAAAATCTTGACT+AGG | - | chr8_1:83481446-83481465 | None:intergenic | 30.0% | |
| CTTGCGAACTAAATTTGATT+TGG | - | chr8_1:83481619-83481638 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGAGTTATCATGCT+AGG | + | chr8_1:83481760-83481779 | Msa1220340:intron | 30.0% |
| GATATGAAAAAGTTAGACCT+TGG | + | chr8_1:83481979-83481998 | Msa1220340:intron | 30.0% | |
| !! | GTGTTTTGAATTAATACCAG+AGG | + | chr8_1:83482044-83482063 | Msa1220340:intron | 30.0% |
| ACCAGAGGAAAACAAAATAA+TGG | + | chr8_1:83482059-83482078 | Msa1220340:intron | 30.0% | |
| !!! | ACCATTATTTTGTTTTCCTC+TGG | - | chr8_1:83482063-83482082 | None:intergenic | 30.0% |
| ATTCTTAAGTCCGGAAAAAT+GGG | + | chr8_1:83482096-83482115 | Msa1220340:intron | 30.0% | |
| !!! | TTTTTTTTGGGTGGACTTTT+TGG | + | chr8_1:83482196-83482215 | Msa1220340:intron | 30.0% |
| CTTTGATTAAATCGTTGACA+TGG | - | chr8_1:83482368-83482387 | None:intergenic | 30.0% | |
| !!! | GTCTAGCCATTTTAATTTGT+TGG | - | chr8_1:83482425-83482444 | None:intergenic | 30.0% |
| TCTTTGTTCTAGTACGATAT+CGG | - | chr8_1:83482709-83482728 | None:intergenic | 30.0% | |
| GGAGAATCTTAGATAAAAGT+AGG | - | chr8_1:83482883-83482902 | None:intergenic | 30.0% | |
| ! | GGTTGACTTTCTAAAAAATC+TGG | - | chr8_1:83483040-83483059 | None:intergenic | 30.0% |
| !! | TAATTCCTTTGGCTTTCATA+GGG | + | chr8_1:83483491-83483510 | Msa1220340:intron | 30.0% |
| !! | GAATTATTTTATGCGGTTCT+TGG | + | chr8_1:83483553-83483572 | Msa1220340:CDS | 30.0% |
| CTTGAGCACATATTTAAAGA+CGG | + | chr8_1:83483697-83483716 | Msa1220340:intron | 30.0% | |
| TACAATTCCATGAATTCGTA+TGG | + | chr8_1:83483768-83483787 | Msa1220340:intron | 30.0% | |
| AGAAGTCGTTGTAAAGTAAA+CGG | - | chr8_1:83483994-83484013 | None:intergenic | 30.0% | |
| ! | CAATTTCTGGAAAAAAGGAT+AGG | - | chr8_1:83484126-83484145 | None:intergenic | 30.0% |
| TGATGTAGATTATGCCATAT+TGG | - | chr8_1:83484177-83484196 | None:intergenic | 30.0% | |
| AGAGTTATCGTCGTAATATT+TGG | - | chr8_1:83484209-83484228 | None:intergenic | 30.0% | |
| TGAAAATAGCATGACTACTT+AGG | - | chr8_1:83484304-83484323 | None:intergenic | 30.0% | |
| ! | GGAAATTGAAATTTTGCTTC+AGG | + | chr8_1:83484387-83484406 | Msa1220340:intron | 30.0% |
| ! | ATTTAATGAAGGTGTGTTCA+AGG | + | chr8_1:83484570-83484589 | Msa1220340:CDS | 30.0% |
| ! | TTTAATGAAGGTGTGTTCAA+GGG | + | chr8_1:83484571-83484590 | Msa1220340:CDS | 30.0% |
| ! | TGAAGAAATTTTCTACGTTG+TGG | + | chr8_1:83484767-83484786 | Msa1220340:CDS | 30.0% |
| TTCTTCATGTGTTCTGTTTA+GGG | - | chr8_1:83484901-83484920 | None:intergenic | 30.0% | |
| ATTCTTCATGTGTTCTGTTT+AGG | - | chr8_1:83484902-83484921 | None:intergenic | 30.0% | |
| TAAACAGAACACATGAAGAA+TGG | + | chr8_1:83484901-83484920 | Msa1220340:CDS | 30.0% | |
| AAACAGAACACATGAAGAAT+GGG | + | chr8_1:83484902-83484921 | Msa1220340:CDS | 30.0% | |
| !! | TCTCAAAAGTATTCCATTTG+AGG | - | chr8_1:83484941-83484960 | None:intergenic | 30.0% |
| ! | CCAGGTGACAATATTTTATT+TGG | - | chr8_1:83484984-83485003 | None:intergenic | 30.0% |
| CCAAATAAAATATTGTCACC+TGG | + | chr8_1:83484981-83485000 | Msa1220340:CDS | 30.0% | |
| !! | ATTTCTTTTGGTGCATCTAG+GGG | - | chr8_1:83479821-83479840 | None:intergenic | 35.0% |
| !! | GATTTCTTTTGGTGCATCTA+GGG | - | chr8_1:83479822-83479841 | None:intergenic | 35.0% |
| ! | AGCATTTGGAGGATTTCTTT+TGG | - | chr8_1:83479833-83479852 | None:intergenic | 35.0% |
| GTGAATTATGTGGCCAAAAT+CGG | - | chr8_1:83479891-83479910 | None:intergenic | 35.0% | |
| !! | AAGGGTTTTGGTGAATTATG+TGG | - | chr8_1:83479901-83479920 | None:intergenic | 35.0% |
| GATGGTGCAAAAATTGCAAA+AGG | - | chr8_1:83479920-83479939 | None:intergenic | 35.0% | |
| CTCTTGCTGCTATAGTAAAA+GGG | - | chr8_1:83479994-83480013 | None:intergenic | 35.0% | |
| ! | CTTTTACTATAGCAGCAAGA+GGG | + | chr8_1:83479993-83480012 | Msa1220340:CDS | 35.0% |
| GACAATCCATGACAAATGAT+GGG | + | chr8_1:83480035-83480054 | Msa1220340:CDS | 35.0% | |
| ! | GAGCTTAGAAATAATGGGAA+TGG | + | chr8_1:83480088-83480107 | Msa1220340:CDS | 35.0% |
| ! | AAATATGTAGATGTTGGTGG+TGG | + | chr8_1:83480127-83480146 | Msa1220340:CDS | 35.0% |
| TGGAAATTTGAGGACCAAAT+CGG | - | chr8_1:83480279-83480298 | None:intergenic | 35.0% | |
| CATGAATTGGATGTTGTTAC+TGG | + | chr8_1:83480304-83480323 | Msa1220340:CDS | 35.0% | |
| ACCTATTGTAGTAACTAGGA+GGG | - | chr8_1:83480365-83480384 | None:intergenic | 35.0% | |
| CATCACCTATTGTAGTAACT+AGG | - | chr8_1:83480369-83480388 | None:intergenic | 35.0% | |
| GGGAGTAAAATTCGAATGTT+AGG | - | chr8_1:83480665-83480684 | None:intergenic | 35.0% | |
| GACATAACTCACCTTATAAC+TGG | - | chr8_1:83481057-83481076 | None:intergenic | 35.0% | |
| ATCCGTAATTTCCAATAGGT+TGG | + | chr8_1:83481318-83481337 | Msa1220340:intron | 35.0% | |
| GTCCAACCTATTGGAAATTA+CGG | - | chr8_1:83481323-83481342 | None:intergenic | 35.0% | |
| CCAATTATTGTCCAACCTAT+TGG | - | chr8_1:83481332-83481351 | None:intergenic | 35.0% | |
| ! | CCAATAGGTTGGACAATAAT+TGG | + | chr8_1:83481329-83481348 | Msa1220340:intron | 35.0% |
| GGATATGAGCTCAAATTCTT+TGG | + | chr8_1:83481352-83481371 | Msa1220340:intron | 35.0% | |
| CTATGTCAATTAGCTAGTTG+AGG | + | chr8_1:83481830-83481849 | Msa1220340:intron | 35.0% | |
| ! | TGTTCTTTTTCTTTAGGCCA+AGG | - | chr8_1:83481999-83482018 | None:intergenic | 35.0% |
| GATTCTTAAGTCCGGAAAAA+TGG | + | chr8_1:83482095-83482114 | Msa1220340:intron | 35.0% | |
| TTCTTAAGTCCGGAAAAATG+GGG | + | chr8_1:83482097-83482116 | Msa1220340:intron | 35.0% | |
| ! | GATATACTTTTAGTGTCTCG+TGG | + | chr8_1:83482488-83482507 | Msa1220340:intron | 35.0% |
| !! | TGTTCTAGAAAGTGGTAGAA+AGG | + | chr8_1:83482656-83482675 | Msa1220340:intron | 35.0% |
| !! | GTTCTAGAAAGTGGTAGAAA+GGG | + | chr8_1:83482657-83482676 | Msa1220340:intron | 35.0% |
| ACAAGATTGCAACCAACAAT+AGG | + | chr8_1:83482731-83482750 | Msa1220340:intron | 35.0% | |
| ! | ATAGGTTGAATTAGTACGTG+TGG | - | chr8_1:83483077-83483096 | None:intergenic | 35.0% |
| TATATTGGAAACTGAGGGAT+AGG | - | chr8_1:83483095-83483114 | None:intergenic | 35.0% | |
| !! | CTAATTCCTTTGGCTTTCAT+AGG | + | chr8_1:83483490-83483509 | Msa1220340:intron | 35.0% |
| !! | TTATTTTATGCGGTTCTTGG+AGG | + | chr8_1:83483556-83483575 | Msa1220340:CDS | 35.0% |
| ! | AACATGTTACTTACCCTCTT+GGG | - | chr8_1:83483634-83483653 | None:intergenic | 35.0% |
| CAAGAAACCATACGAATTCA+TGG | - | chr8_1:83483778-83483797 | None:intergenic | 35.0% | |
| AATGCACCCAATTATGTAGA+AGG | + | chr8_1:83484070-83484089 | Msa1220340:CDS | 35.0% | |
| ACTTCCTTGGTAAACCAATA+TGG | + | chr8_1:83484160-83484179 | Msa1220340:CDS | 35.0% | |
| !! | TATGCCATATTGGTTTACCA+AGG | - | chr8_1:83484167-83484186 | None:intergenic | 35.0% |
| ! | CTTCATATGACGAGTCTTTT+TGG | - | chr8_1:83484278-83484297 | None:intergenic | 35.0% |
| ATACTGATGAGCTAACACTA+AGG | + | chr8_1:83484479-83484498 | Msa1220340:CDS | 35.0% | |
| TACTGATGAGCTAACACTAA+GGG | + | chr8_1:83484480-83484499 | Msa1220340:CDS | 35.0% | |
| TTCTAGATCCTGGAACAAAT+AGG | - | chr8_1:83484543-83484562 | None:intergenic | 35.0% | |
| AATTCAGACATTCTAGATCC+TGG | - | chr8_1:83484553-83484572 | None:intergenic | 35.0% | |
| !!! | CAGCGGTAATGTTTTGTTTA+AGG | - | chr8_1:83484603-83484622 | None:intergenic | 35.0% |
| CTTAAACAAAACATTACCGC+TGG | + | chr8_1:83484601-83484620 | Msa1220340:CDS | 35.0% | |
| CTTACTTTGTTCGGTTCATT+GGG | - | chr8_1:83484642-83484661 | None:intergenic | 35.0% | |
| ACTTACTTTGTTCGGTTCAT+TGG | - | chr8_1:83484643-83484662 | None:intergenic | 35.0% | |
| ! | TGCAACTGGGTTTGATAATT+TGG | + | chr8_1:83484800-83484819 | Msa1220340:CDS | 35.0% |
| ! | AACTGGGTTTGATAATTTGG+AGG | + | chr8_1:83484803-83484822 | Msa1220340:CDS | 35.0% |
| TTGCAATTCTGTAAGGATGT+CGG | + | chr8_1:83484852-83484871 | Msa1220340:CDS | 35.0% | |
| TCTTCATGTGTTCTGTTTAG+GGG | - | chr8_1:83484900-83484919 | None:intergenic | 35.0% | |
| AACAAGCACAACTACAACCA+TGG | + | chr8_1:83479792-83479811 | Msa1220340:CDS | 40.0% | |
| !! | GGATTTCTTTTGGTGCATCT+AGG | - | chr8_1:83479823-83479842 | None:intergenic | 40.0% |
| GCTGCTATAGTAAAAGGGAT+AGG | - | chr8_1:83479989-83480008 | None:intergenic | 40.0% | |
| CCTCTTGCTGCTATAGTAAA+AGG | - | chr8_1:83479995-83480014 | None:intergenic | 40.0% | |
| ! | CCTTTTACTATAGCAGCAAG+AGG | + | chr8_1:83479992-83480011 | Msa1220340:CDS | 40.0% |
| GGACAATCCATGACAAATGA+TGG | + | chr8_1:83480034-83480053 | Msa1220340:CDS | 40.0% | |
| CACAATCCCATCATTTGTCA+TGG | - | chr8_1:83480044-83480063 | None:intergenic | 40.0% | |
| ! | CATGACAAATGATGGGATTG+TGG | + | chr8_1:83480042-83480061 | Msa1220340:CDS | 40.0% |
| TTGCATGCAAGCCTTGAAAA+AGG | + | chr8_1:83480169-83480188 | Msa1220340:CDS | 40.0% | |
| !! | GTGGTGTAAGTCCTTTTTCA+AGG | - | chr8_1:83480183-83480202 | None:intergenic | 40.0% |
| AAGGACTTACACCACTTTCT+TGG | + | chr8_1:83480188-83480207 | Msa1220340:CDS | 40.0% | |
| CTCTCTAATGCTGGTATTAG+TGG | + | chr8_1:83480244-83480263 | Msa1220340:CDS | 40.0% | |
| TCCCTCCTAGTTACTACAAT+AGG | + | chr8_1:83480361-83480380 | Msa1220340:intron | 40.0% | |
| CACCTATTGTAGTAACTAGG+AGG | - | chr8_1:83480366-83480385 | None:intergenic | 40.0% | |
| ! | TGTTAGTTTGAGTCGGATCA+TGG | + | chr8_1:83480532-83480551 | Msa1220340:intron | 40.0% |
| TGAGCTCAAATTCTTTGGTG+AGG | + | chr8_1:83481357-83481376 | Msa1220340:intron | 40.0% | |
| ATGGACATTGGAGATTTCAC+TGG | + | chr8_1:83481481-83481500 | Msa1220340:intron | 40.0% | |
| !! | AGTCACATACCCCATTTTTC+CGG | - | chr8_1:83482109-83482128 | None:intergenic | 40.0% |
| ! | ATACTTTTAGTGTCTCGTGG+AGG | + | chr8_1:83482491-83482510 | Msa1220340:intron | 40.0% |
| ! | TGAGACTCGTCACTTTATGT+AGG | - | chr8_1:83482608-83482627 | None:intergenic | 40.0% |
| AGAACAACTGCTCTCGTATT+AGG | - | chr8_1:83482642-83482661 | None:intergenic | 40.0% | |
| !! | AGAGCAGTTGTTCTAGAAAG+TGG | + | chr8_1:83482648-83482667 | Msa1220340:intron | 40.0% |
| CGTGTGGCAATATACTTTGT+TGG | - | chr8_1:83483061-83483080 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTAAGGCTCTTGT+AGG | - | chr8_1:83483463-83483482 | None:intergenic | 40.0% |
| TTTCATAGGGAAAGGAGACT+TGG | + | chr8_1:83483504-83483523 | Msa1220340:intron | 40.0% | |
| ! | GTCAGTTTGGGATTATAACC+CGG | + | chr8_1:83483584-83483603 | Msa1220340:CDS | 40.0% |
| ! | TCAGTTTGGGATTATAACCC+GGG | + | chr8_1:83483585-83483604 | Msa1220340:CDS | 40.0% |
| ! | GAACATGTTACTTACCCTCT+TGG | - | chr8_1:83483635-83483654 | None:intergenic | 40.0% |
| ! | AACGACTTCTCTGCATTTTC+TGG | + | chr8_1:83484004-83484023 | Msa1220340:CDS | 40.0% |
| AAAAAGGATAGGTCTAGTGG+TGG | - | chr8_1:83484115-83484134 | None:intergenic | 40.0% | |
| GGAAAAAAGGATAGGTCTAG+TGG | - | chr8_1:83484118-83484137 | None:intergenic | 40.0% | |
| ! | ATGCGAGGTTGATCAATTTC+TGG | - | chr8_1:83484139-83484158 | None:intergenic | 40.0% |
| TTTACCAAGGAAGTTATGCG+AGG | - | chr8_1:83484154-83484173 | None:intergenic | 40.0% | |
| CTCTCAAGATCATGTTGATC+AGG | + | chr8_1:83484225-83484244 | Msa1220340:CDS | 40.0% | |
| ATAGGTCTAACCAAGGATGT+GGG | - | chr8_1:83484525-83484544 | None:intergenic | 40.0% | |
| AATAGGTCTAACCAAGGATG+TGG | - | chr8_1:83484526-83484545 | None:intergenic | 40.0% | |
| GGAACAAATAGGTCTAACCA+AGG | - | chr8_1:83484532-83484551 | None:intergenic | 40.0% | |
| TGGTTAGACCTATTTGTTCC+AGG | + | chr8_1:83484532-83484551 | Msa1220340:CDS | 40.0% | |
| GTACACTATTACAAGTCCAG+CGG | - | chr8_1:83484620-83484639 | None:intergenic | 40.0% | |
| !!! | TGGATTTTTTGCGTGCAACT+GGG | + | chr8_1:83484787-83484806 | Msa1220340:CDS | 40.0% |
| GAAGAATGGGTGGAACAATA+TGG | + | chr8_1:83484915-83484934 | Msa1220340:CDS | 40.0% | |
| TGGAACAATATGGCCTCAAA+TGG | + | chr8_1:83484925-83484944 | Msa1220340:CDS | 40.0% | |
| AAAATATTGTCACCTGGGCA+AGG | + | chr8_1:83484987-83485006 | Msa1220340:CDS | 40.0% | |
| AAATATTGTCACCTGGGCAA+GGG | + | chr8_1:83484988-83485007 | Msa1220340:CDS | 40.0% | |
| TGAGGCTAGTGAAATGGTCA+CGG | - | chr8_1:83479867-83479886 | None:intergenic | 45.0% | |
| ATCGGTTGAGGCTAGTGAAA+TGG | - | chr8_1:83479873-83479892 | None:intergenic | 45.0% | |
| !! | TCACTAGCCTCAACCGATTT+TGG | + | chr8_1:83479875-83479894 | Msa1220340:CDS | 45.0% |
| TATGTGGCCAAAATCGGTTG+AGG | - | chr8_1:83479885-83479904 | None:intergenic | 45.0% | |
| AGTGGACAAAGCTTCCGATT+TGG | + | chr8_1:83480262-83480281 | Msa1220340:CDS | 45.0% | |
| GACATTGGAGATTTCACTGG+TGG | + | chr8_1:83481484-83481503 | Msa1220340:intron | 45.0% | |
| ATTGCAACCAACAATAGGCG+TGG | + | chr8_1:83482736-83482755 | Msa1220340:intron | 45.0% | |
| TAGATCTCCACGCCTATTGT+TGG | - | chr8_1:83482746-83482765 | None:intergenic | 45.0% | |
| ACAATAGGCGTGGAGATCTA+TGG | + | chr8_1:83482746-83482765 | Msa1220340:intron | 45.0% | |
| CCTTTCCCTATGAAAGCCAA+AGG | - | chr8_1:83483499-83483518 | None:intergenic | 45.0% | |
| !! | CCTTTGGCTTTCATAGGGAA+AGG | + | chr8_1:83483496-83483515 | Msa1220340:intron | 45.0% |
| TTGGAGGTCTAGGTCAGTTT+GGG | + | chr8_1:83483572-83483591 | Msa1220340:CDS | 45.0% | |
| TCAACCTCGCATAACTTCCT+TGG | + | chr8_1:83484147-83484166 | Msa1220340:CDS | 45.0% | |
| ! | AGCTAACACTAAGGGCACAA+GGG | + | chr8_1:83484488-83484507 | Msa1220340:CDS | 45.0% |
| ! | TTTGGGATATCCCACATCCT+TGG | + | chr8_1:83484512-83484531 | Msa1220340:CDS | 45.0% |
| !!! | GTGGATTTTTTGCGTGCAAC+TGG | + | chr8_1:83484786-83484805 | Msa1220340:CDS | 45.0% |
| CAGAACACATGAAGAATGGG+TGG | + | chr8_1:83484905-83484924 | Msa1220340:CDS | 45.0% | |
| TAGTTGAAAATCCCTTGCCC+AGG | - | chr8_1:83485002-83485021 | None:intergenic | 45.0% | |
| !!! | TTTAATAATATATACTTTTT+AGG | - | chr8_1:83480587-83480606 | None:intergenic | 5.0% |
| !! | AATATTGTATTAATATTATA+CGG | + | chr8_1:83480985-83481004 | Msa1220340:intron | 5.0% |
| !!! | TATTCTATTTTATTTTTTTT+GGG | + | chr8_1:83481012-83481031 | Msa1220340:intron | 5.0% |
| !!! | TAATGTATATTTTATTTTTA+GGG | - | chr8_1:83483154-83483173 | None:intergenic | 5.0% |
| !!! | ATAATGTATATTTTATTTTT+AGG | - | chr8_1:83483155-83483174 | None:intergenic | 5.0% |
| !! | AAAATAAAATATACATTATA+TGG | + | chr8_1:83483156-83483175 | Msa1220340:intron | 5.0% |
| GGTCACGACTAAGCATTTGG+AGG | - | chr8_1:83479844-83479863 | None:intergenic | 50.0% | |
| AGGCTAGTGAAATGGTCACG+GGG | - | chr8_1:83479865-83479884 | None:intergenic | 50.0% | |
| GAGGCTAGTGAAATGGTCAC+GGG | - | chr8_1:83479866-83479885 | None:intergenic | 50.0% | |
| ACTATAGCAGCAAGAGGGCA+AGG | + | chr8_1:83479998-83480017 | Msa1220340:CDS | 50.0% | |
| CTATAGCAGCAAGAGGGCAA+GGG | + | chr8_1:83479999-83480018 | Msa1220340:CDS | 50.0% | |
| !! | GGGCAAGGGCATTCAGTTAA+TGG | + | chr8_1:83480013-83480032 | Msa1220340:CDS | 50.0% |
| !! | ATGTTGGTGGTGGACAACGT+TGG | + | chr8_1:83480137-83480156 | Msa1220340:CDS | 50.0% |
| GGTGGAACTCTCTCTAATGC+TGG | + | chr8_1:83480235-83480254 | Msa1220340:CDS | 50.0% | |
| TATGCGGTTCTTGGAGGTCT+AGG | + | chr8_1:83483562-83483581 | Msa1220340:CDS | 50.0% | |
| CTTGGAGGTCTAGGTCAGTT+TGG | + | chr8_1:83483571-83483590 | Msa1220340:CDS | 50.0% | |
| TTACTTACCCTCTTGGGTGC+AGG | - | chr8_1:83483628-83483647 | None:intergenic | 50.0% | |
| ! | GAGCTAACACTAAGGGCACA+AGG | + | chr8_1:83484487-83484506 | Msa1220340:CDS | 50.0% |
| ! | ACTAAGGGCACAAGGGCTTT+GGG | + | chr8_1:83484495-83484514 | Msa1220340:CDS | 50.0% |
| CGGGGTCACGACTAAGCATT+TGG | - | chr8_1:83479847-83479866 | None:intergenic | 55.0% | |
| TCCAAGGGCTATTCTTGCCC+GGG | - | chr8_1:83483605-83483624 | None:intergenic | 55.0% | |
| GTCCAAGGGCTATTCTTGCC+CGG | - | chr8_1:83483606-83483625 | None:intergenic | 55.0% | |
| ! | CACTAAGGGCACAAGGGCTT+TGG | + | chr8_1:83484494-83484513 | Msa1220340:CDS | 55.0% |
| GGTGCATCTAGGGGTGACCA+TGG | - | chr8_1:83479812-83479831 | None:intergenic | 60.0% | |
| ACCCGGGCAAGAATAGCCCT+TGG | + | chr8_1:83483601-83483620 | Msa1220340:CDS | 60.0% | |
| CCTCTTGGGTGCAGGTCCAA+GGG | - | chr8_1:83483620-83483639 | None:intergenic | 60.0% | |
| CCTTGGACCTGCACCCAAGA+GGG | + | chr8_1:83483618-83483637 | Msa1220340:CDS | 60.0% | |
| CCCTTGGACCTGCACCCAAG+AGG | + | chr8_1:83483617-83483636 | Msa1220340:CDS | 65.0% | |
| CCCTCTTGGGTGCAGGTCCA+AGG | - | chr8_1:83483621-83483640 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 83479722 | 83485022 | 83479722 | ID=Msa1220340;Name=Msa1220340 |
| chr8_1 | mRNA | 83479722 | 83485022 | 83479722 | ID=Msa1220340-mRNA-1;Parent=Msa1220340;Name=Msa1220340-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.25|0|1|1|1|5|0|518 |
| chr8_1 | exon | 83479722 | 83480325 | 83479722 | ID=Msa1220340-mRNA-1:exon:29912;Parent=Msa1220340-mRNA-1 |
| chr8_1 | exon | 83483512 | 83483639 | 83483512 | ID=Msa1220340-mRNA-1:exon:29913;Parent=Msa1220340-mRNA-1 |
| chr8_1 | exon | 83483980 | 83484246 | 83483980 | ID=Msa1220340-mRNA-1:exon:29914;Parent=Msa1220340-mRNA-1 |
| chr8_1 | exon | 83484388 | 83484656 | 83484388 | ID=Msa1220340-mRNA-1:exon:29915;Parent=Msa1220340-mRNA-1 |
| chr8_1 | exon | 83484734 | 83485022 | 83484734 | ID=Msa1220340-mRNA-1:exon:29916;Parent=Msa1220340-mRNA-1 |
| chr8_1 | CDS | 83479722 | 83480325 | 83479722 | ID=Msa1220340-mRNA-1:cds;Parent=Msa1220340-mRNA-1 |
| chr8_1 | CDS | 83483512 | 83483639 | 83483512 | ID=Msa1220340-mRNA-1:cds;Parent=Msa1220340-mRNA-1 |
| chr8_1 | CDS | 83483980 | 83484246 | 83483980 | ID=Msa1220340-mRNA-1:cds;Parent=Msa1220340-mRNA-1 |
| chr8_1 | CDS | 83484388 | 83484656 | 83484388 | ID=Msa1220340-mRNA-1:cds;Parent=Msa1220340-mRNA-1 |
| chr8_1 | CDS | 83484734 | 83485022 | 83484734 | ID=Msa1220340-mRNA-1:cds;Parent=Msa1220340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
