Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221110 | KEH32555.1 | 97.606 | 376 | 4 | 1 | 1 | 376 | 1 | 371 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221110 | sp|Q9Y2D8|ADIP_HUMAN | 25.606 | 371 | 232 | 11 | 10 | 353 | 45 | 398 | 2.06e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221110 | A0A072URX3 | 97.090 | 378 | 6 | 1 | 1 | 378 | 1 | 373 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094580 | Msa1221110 | 0.875383 | 3.218489e-68 | -8.615850e-47 |
| Msa1221110 | Msa1265440 | 0.930876 | 8.634528e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221110 | MtrunA17_Chr4g0072331 | 97.090 | 378 | 6 | 1 | 1 | 378 | 1 | 373 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221110 | AT5G57410.3 | 78.400 | 375 | 73 | 3 | 1 | 375 | 1 | 367 | 0.0 | 590 |
| Msa1221110 | AT5G57410.1 | 78.400 | 375 | 73 | 3 | 1 | 375 | 1 | 367 | 0.0 | 589 |
| Msa1221110 | AT2G18876.1 | 76.613 | 372 | 81 | 2 | 4 | 374 | 6 | 372 | 0.0 | 571 |
| Msa1221110 | AT5G57410.2 | 81.437 | 334 | 55 | 2 | 42 | 375 | 1 | 327 | 0.0 | 543 |
| Msa1221110 | AT2G18876.2 | 77.778 | 279 | 57 | 1 | 96 | 374 | 1 | 274 | 2.33e-153 | 435 |
Find 98 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTAAGTTTAACTATAT+TGG | 0.195896 | 8_1:+84600968 | Msa1221110:exon |
| TAGCAGAAAATGCTGATTTA+AGG | 0.209461 | 8_1:+84597998 | Msa1221110:CDS |
| ACTTGCATGACATTTAAAAT+TGG | 0.254868 | 8_1:+84601200 | Msa1221110:three_prime_UTR |
| CTGAAGGAGACTTAGATCTT+AGG | 0.266475 | 8_1:+84596310 | Msa1221110:CDS |
| ATTCGCCGATGTAAACAATT+TGG | 0.268664 | 8_1:+84596536 | Msa1221110:CDS |
| CTTTCTGAGCATCTTGCAAT+TGG | 0.281888 | 8_1:-84599193 | None:intergenic |
| CCCCTTAGTTCTTATGTAAC+AGG | 0.287649 | 8_1:+84601057 | Msa1221110:three_prime_UTR |
| GTTATGTTTATCGAGGTTAT+AGG | 0.304845 | 8_1:+84600243 | Msa1221110:intron |
| GAATTTCAGAGGATGGTTAT+TGG | 0.312259 | 8_1:+84597289 | Msa1221110:CDS |
| CTATCTAATATCTATGTCTT+TGG | 0.318348 | 8_1:-84596223 | None:intergenic |
| GGAGATAATGAATTTGCTTC+AGG | 0.322573 | 8_1:+84597697 | Msa1221110:CDS |
| GAGGATGGTTATTGGTAATC+AGG | 0.324855 | 8_1:+84597297 | Msa1221110:CDS |
| CTAAGATCTAAGTCTCCTTC+AGG | 0.332420 | 8_1:-84596309 | None:intergenic |
| TCTCATTCTGCTTTCACAAC+CGG | 0.335124 | 8_1:+84596416 | Msa1221110:CDS |
| AGCAAAGATGGCTTCTATAA+AGG | 0.358500 | 8_1:+84599058 | Msa1221110:CDS |
| TTTCATTAGTAATGGGAGAT+TGG | 0.375196 | 8_1:-84598856 | None:intergenic |
| GATCGGTGCTAAAGCAAGTT+AGG | 0.379032 | 8_1:+84597417 | Msa1221110:intron |
| AACCAATCACTCGTTACATT+TGG | 0.384759 | 8_1:+84596579 | Msa1221110:CDS |
| AAAGGAATACATTAAGTTGC+AGG | 0.407699 | 8_1:+84597472 | Msa1221110:CDS |
| CTCATTCTGCTTTCACAACC+GGG | 0.410022 | 8_1:+84596417 | Msa1221110:CDS |
| AATTAGTGATATTGTGATCT+TGG | 0.410326 | 8_1:+84601128 | Msa1221110:three_prime_UTR |
| AGCAGAAAATGCTGATTTAA+GGG | 0.431389 | 8_1:+84597999 | Msa1221110:CDS |
| GCTAAAGTTGAGAGGCTTGA+TGG | 0.431843 | 8_1:+84596948 | Msa1221110:CDS |
| GAGGGATGAATTTCAGAGGA+TGG | 0.437656 | 8_1:+84597282 | Msa1221110:CDS |
| AGAGTGCAACTTTCAAAAGA+AGG | 0.440757 | 8_1:+84600286 | Msa1221110:CDS |
| GAGACTAAACCAAGTGTTGA+TGG | 0.441272 | 8_1:+84597646 | Msa1221110:CDS |
| TTGATGTTATAGATTGTTGT+CGG | 0.446064 | 8_1:+84596908 | Msa1221110:intron |
| TGAAGGAGACTTAGATCTTA+GGG | 0.451843 | 8_1:+84596311 | Msa1221110:CDS |
| GATTGGTTTGGTAGTCCGTT+AGG | 0.455596 | 8_1:-84598839 | None:intergenic |
| GGCCTGTTACATAAGAACTA+AGG | 0.461812 | 8_1:-84601059 | None:intergenic |
| GAGAATAGATCAAGTGAAGC+AGG | 0.463962 | 8_1:-84596606 | None:intergenic |
| ATGAAAGGTGGACGCTTATG+AGG | 0.465264 | 8_1:+84597957 | Msa1221110:intron |
| TCTTCTTCTCCATCAACACT+TGG | 0.465829 | 8_1:-84597655 | None:intergenic |
| AAGGAGCATTATACAAGAGC+AGG | 0.468589 | 8_1:+84599280 | Msa1221110:CDS |
| GACATTTAAAATTGGTAACT+AGG | 0.475823 | 8_1:+84601208 | Msa1221110:three_prime_UTR |
| AACCAAATGTAACGAGTGAT+TGG | 0.476259 | 8_1:-84596581 | None:intergenic |
| TTAGTAATGGGAGATTGGTT+TGG | 0.477309 | 8_1:-84598851 | None:intergenic |
| AGGCAACGTGGAACATGGAA+TGG | 0.477813 | 8_1:+84597820 | Msa1221110:CDS |
| AACATCTTGCAAAGTCTGAC+AGG | 0.478571 | 8_1:+84599748 | Msa1221110:CDS |
| TGAGATGAAGAAGAAGGAAA+AGG | 0.485631 | 8_1:+84597454 | Msa1221110:CDS |
| ATGATGAAAATAAATGAAAT+CGG | 0.487343 | 8_1:-84596177 | None:intergenic |
| TAAGATCTAAGTCTCCTTCA+GGG | 0.487351 | 8_1:-84596308 | None:intergenic |
| AGAGAGTCTAAGAGCAAAGA+TGG | 0.492833 | 8_1:+84599046 | Msa1221110:CDS |
| CCTTCACATTCTCCGATGGT+TGG | 0.509391 | 8_1:+84598893 | Msa1221110:CDS |
| TGATCTCTAGCCATGTGAAA+AGG | 0.512834 | 8_1:-84599017 | None:intergenic |
| CATAAAATACATACCTCAGC+TGG | 0.523070 | 8_1:-84599868 | None:intergenic |
| TAACTATATTGGCTCTGTAG+TGG | 0.526470 | 8_1:+84600979 | Msa1221110:three_prime_UTR |
| TTCTCCGATGGTTGGAAGAA+CGG | 0.529147 | 8_1:+84598901 | Msa1221110:CDS |
| GGCAACGTGGAACATGGAAT+GGG | 0.529540 | 8_1:+84597821 | Msa1221110:CDS |
| GCCTGTTACATAAGAACTAA+GGG | 0.536150 | 8_1:-84601058 | None:intergenic |
| GACAAGCAAGATTAGTTACA+TGG | 0.536778 | 8_1:-84601020 | None:intergenic |
| AATACATGAGATGAAGAAGA+AGG | 0.539316 | 8_1:+84597448 | Msa1221110:CDS |
| TGGAGAAGAAGAAAGAATCT+AGG | 0.539755 | 8_1:+84597666 | Msa1221110:CDS |
| GAAAGAATCTAGGTCGGGCA+TGG | 0.541566 | 8_1:+84597676 | Msa1221110:CDS |
| ATTGCAAGATGCTCAGAAAG+AGG | 0.551306 | 8_1:+84599196 | Msa1221110:CDS |
| GGCATTGTTGAGATCAATGC+AGG | 0.551330 | 8_1:+84598020 | Msa1221110:CDS |
| AAGCTCAACTTGTTGAAGCA+AGG | 0.554611 | 8_1:+84599261 | Msa1221110:CDS |
| TAACATGGCTGAGGGTACTC+AGG | 0.557067 | 8_1:+84600932 | Msa1221110:CDS |
| ACAACAATGCCTTCCCCTGA+AGG | 0.557896 | 8_1:+84596294 | Msa1221110:exon |
| AAGAAGAAAGAATCTAGGTC+GGG | 0.563858 | 8_1:+84597671 | Msa1221110:CDS |
| TTGCAAAGTCTGACAGGCCA+AGG | 0.565306 | 8_1:+84599754 | Msa1221110:CDS |
| GTATGCAACTAACATGGCTG+AGG | 0.567804 | 8_1:+84600923 | Msa1221110:CDS |
| CATACCGTTCTTCCAACCAT+CGG | 0.570593 | 8_1:-84598905 | None:intergenic |
| TTGAAATATGAAGGAGCGCA+TGG | 0.571327 | 8_1:+84599169 | Msa1221110:intron |
| AAGGGAGGCAACGTGGAACA+TGG | 0.578914 | 8_1:+84597815 | Msa1221110:CDS |
| TCTAAGTCTCCTTCAGGGGA+AGG | 0.580264 | 8_1:-84596303 | None:intergenic |
| ATGTTCCAAATTGTTTACAT+CGG | 0.582928 | 8_1:-84596541 | None:intergenic |
| TAATCCTTCACATTCTCCGA+TGG | 0.586438 | 8_1:+84598889 | Msa1221110:CDS |
| GTGAAAGCAGAATGAGAAGA+TGG | 0.586466 | 8_1:-84596410 | None:intergenic |
| CAGGGAATCGGCACCAGCTG+AGG | 0.589223 | 8_1:+84599855 | Msa1221110:intron |
| GAAAGAGGCAGAAGTCACTT+CGG | 0.590207 | 8_1:+84599211 | Msa1221110:CDS |
| TGTGGTAGGTTTCTATAGCA+AGG | 0.590695 | 8_1:+84596724 | Msa1221110:intron |
| TCTATGTCTTTGGCTTTAAG+CGG | 0.591332 | 8_1:-84596213 | None:intergenic |
| AACATTCAAAACTACGTGGA+TGG | 0.594211 | 8_1:-84597726 | None:intergenic |
| TTATGTAACAGGCCATCGTA+TGG | 0.600689 | 8_1:+84601068 | Msa1221110:three_prime_UTR |
| GATGTGCATAAACAGAAGGA+AGG | 0.605299 | 8_1:+84597796 | Msa1221110:intron |
| CAGGGAGTATGCAACTAACA+TGG | 0.608511 | 8_1:+84600917 | Msa1221110:intron |
| AAAAGTTATTAATGTCTCGA+GGG | 0.611410 | 8_1:+84601169 | Msa1221110:three_prime_UTR |
| AGAATAGATCAAGTGAAGCA+GGG | 0.616733 | 8_1:-84596605 | None:intergenic |
| GAAGAAGAAAGAATCTAGGT+CGG | 0.617695 | 8_1:+84597670 | Msa1221110:CDS |
| GATTTCTTAAATGCTCCTAA+CGG | 0.620088 | 8_1:+84598824 | Msa1221110:CDS |
| ATGTGCATAAACAGAAGGAA+GGG | 0.622972 | 8_1:+84597797 | Msa1221110:intron |
| AAGAGAGGGATGAATTTCAG+AGG | 0.623845 | 8_1:+84597278 | Msa1221110:CDS |
| CTGTTACATAAGAACTAAGG+GGG | 0.635206 | 8_1:-84601056 | None:intergenic |
| CCAACCATCGGAGAATGTGA+AGG | 0.644590 | 8_1:-84598893 | None:intergenic |
| GATACGAGGCTAAAGTTGAG+AGG | 0.644683 | 8_1:+84596940 | Msa1221110:CDS |
| GATCTTGGAAGTGCTTCTAG+AGG | 0.648115 | 8_1:+84601143 | Msa1221110:three_prime_UTR |
| AAGATCTAAGTCTCCTTCAG+GGG | 0.653936 | 8_1:-84596307 | None:intergenic |
| ACAAGCAAGATTAGTTACAT+GGG | 0.661523 | 8_1:-84601019 | None:intergenic |
| TGCATAAACAGAAGGAAGGG+AGG | 0.662009 | 8_1:+84597800 | Msa1221110:intron |
| CAGAAGGAAGGGAGGCAACG+TGG | 0.662298 | 8_1:+84597808 | Msa1221110:intron |
| AATGACATTCGACCATACGA+TGG | 0.672330 | 8_1:-84601080 | None:intergenic |
| GATAGCGACGATAACTAGAA+CGG | 0.680604 | 8_1:+84596995 | Msa1221110:CDS |
| CCTGTTACATAAGAACTAAG+GGG | 0.690405 | 8_1:-84601057 | None:intergenic |
| TATGCAACTAACATGGCTGA+GGG | 0.693043 | 8_1:+84600924 | Msa1221110:CDS |
| GTCGGATATATCAAGATACG+AGG | 0.705974 | 8_1:+84596926 | Msa1221110:CDS |
| TGTTACATAAGAACTAAGGG+GGG | 0.728256 | 8_1:-84601055 | None:intergenic |
| CTGCGAATGAACAAAGACAA+CGG | 0.734178 | 8_1:+84596808 | Msa1221110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAGTTTATAATGATA+GGG | - | chr8_1:84597895-84597914 | None:intergenic | 10.0% |
| !! | AATATAAAGTTTATAATGAT+AGG | - | chr8_1:84597896-84597915 | None:intergenic | 10.0% |
| !!! | TATTTTATTTTGTAATGATT+AGG | + | chr8_1:84600022-84600041 | Msa1221110:intron | 10.0% |
| !!! | ATTTTATTTTGTAATGATTA+GGG | + | chr8_1:84600023-84600042 | Msa1221110:intron | 10.0% |
| !! | ATGATGAAAATAAATGAAAT+CGG | - | chr8_1:84596180-84596199 | None:intergenic | 15.0% |
| !! | GAAATTAAAGAAGAAAAAAA+GGG | - | chr8_1:84596360-84596379 | None:intergenic | 15.0% |
| !! | AGAAATTAAAGAAGAAAAAA+AGG | - | chr8_1:84596361-84596380 | None:intergenic | 15.0% |
| !!! | ATGATTTTAAATTATGGTTT+TGG | + | chr8_1:84597025-84597044 | Msa1221110:intron | 15.0% |
| !!! | CTAACATTATTTTGTAAATA+AGG | - | chr8_1:84597107-84597126 | None:intergenic | 15.0% |
| !! | TCATTATAAACTTTATATTC+TGG | + | chr8_1:84597897-84597916 | Msa1221110:intron | 15.0% |
| !! | TTTATTATAATAATGAAAGG+TGG | + | chr8_1:84597945-84597964 | Msa1221110:intron | 15.0% |
| !!! | TTCATAAATTTTTTATGCTT+TGG | + | chr8_1:84598307-84598326 | Msa1221110:intron | 15.0% |
| !!! | TCATAAATTTTTTATGCTTT+GGG | + | chr8_1:84598308-84598327 | Msa1221110:intron | 15.0% |
| !! | TATAAATTCTTTAATGCATT+TGG | + | chr8_1:84598503-84598522 | Msa1221110:intron | 15.0% |
| !! | ATAAATTCTTTAATGCATTT+GGG | + | chr8_1:84598504-84598523 | Msa1221110:intron | 15.0% |
| !!! | ATTTACTTTTTGAATTTTAC+AGG | + | chr8_1:84599836-84599855 | Msa1221110:intron | 15.0% |
| !!! | TTTACTTTTTGAATTTTACA+GGG | + | chr8_1:84599837-84599856 | Msa1221110:intron | 15.0% |
| !! | ATGATTAAGTTTAACTATAT+TGG | + | chr8_1:84600968-84600987 | Msa1221110:exon | 15.0% |
| !! | ATCAAAGATCAAAATTCTTA+CGG | - | chr8_1:84596640-84596659 | None:intergenic | 20.0% |
| !!! | TTTGTTCTTGTTTTTGAAAA+TGG | + | chr8_1:84596686-84596705 | Msa1221110:intron | 20.0% |
| !! | TATCAATCTTACTATTTGAT+CGG | + | chr8_1:84597400-84597419 | Msa1221110:intron | 20.0% |
| !! | ATTAGACTTAGAAATATGAA+AGG | + | chr8_1:84597601-84597620 | Msa1221110:intron | 20.0% |
| !! | ATTTATGAATGAAATGAGAA+CGG | - | chr8_1:84598296-84598315 | None:intergenic | 20.0% |
| !!! | CATAAATTTTTTATGCTTTG+GGG | + | chr8_1:84598309-84598328 | Msa1221110:intron | 20.0% |
| !! | TAAATTCTTTAATGCATTTG+GGG | + | chr8_1:84598505-84598524 | Msa1221110:intron | 20.0% |
| !! | CAAAATAAAAATTACAACGA+TGG | - | chr8_1:84598677-84598696 | None:intergenic | 20.0% |
| !!! | TTGTAATTTTTATTTTGCGT+AGG | + | chr8_1:84598680-84598699 | Msa1221110:intron | 20.0% |
| !!! | TCAGATTTTTCATTAGTAAT+GGG | - | chr8_1:84598866-84598885 | None:intergenic | 20.0% |
| !!! | TTCAGATTTTTCATTAGTAA+TGG | - | chr8_1:84598867-84598886 | None:intergenic | 20.0% |
| !! | TAACAAACTCATAAATTTCA+TGG | - | chr8_1:84598975-84598994 | None:intergenic | 20.0% |
| !! | ATATATGAATTGTTTGTGTT+TGG | + | chr8_1:84599128-84599147 | Msa1221110:intron | 20.0% |
| !!! | AAACTAAATTGCTATTGAAT+TGG | + | chr8_1:84599472-84599491 | Msa1221110:intron | 20.0% |
| !! | GAAAATAAGATACATGTTTA+GGG | - | chr8_1:84599560-84599579 | None:intergenic | 20.0% |
| !! | TGAAAATAAGATACATGTTT+AGG | - | chr8_1:84599561-84599580 | None:intergenic | 20.0% |
| !! | CAAATTCACACTATAAAATT+AGG | - | chr8_1:84599953-84599972 | None:intergenic | 20.0% |
| !!! | ATTTTATAGTGTGAATTTGT+TGG | + | chr8_1:84599954-84599973 | Msa1221110:intron | 20.0% |
| !!! | CTTTAAAGAACATTAGAAAT+GGG | + | chr8_1:84600518-84600537 | Msa1221110:intron | 20.0% |
| !!! | CAATTTTACCATATTATTAC+AGG | - | chr8_1:84600801-84600820 | None:intergenic | 20.0% |
| ! | CTATCTAATATCTATGTCTT+TGG | - | chr8_1:84596226-84596245 | None:intergenic | 25.0% |
| ! | AAGAAAAAATGAGACAGTTA+GGG | - | chr8_1:84596386-84596405 | None:intergenic | 25.0% |
| ! | AAAGAAAAAATGAGACAGTT+AGG | - | chr8_1:84596387-84596406 | None:intergenic | 25.0% |
| ! | ATGTTCCAAATTGTTTACAT+CGG | - | chr8_1:84596544-84596563 | None:intergenic | 25.0% |
| ! | TCAAAGATCAAAATTCTTAC+GGG | - | chr8_1:84596639-84596658 | None:intergenic | 25.0% |
| !!! | GGTTCAATTTTGATATCATT+AGG | + | chr8_1:84596836-84596855 | Msa1221110:intron | 25.0% |
| ! | TTGATGTTATAGATTGTTGT+CGG | + | chr8_1:84596908-84596927 | Msa1221110:intron | 25.0% |
| !! | GAGGCAATGATTTTAAATTA+TGG | + | chr8_1:84597019-84597038 | Msa1221110:intron | 25.0% |
| !!! | CTTTTGTTGTTTAATGTGAA+TGG | + | chr8_1:84597509-84597528 | Msa1221110:intron | 25.0% |
| !! | GTTTAATGTGAATGGTATTT+TGG | + | chr8_1:84597517-84597536 | Msa1221110:intron | 25.0% |
| ! | TTTCTAAGTCTAATAACTTG+CGG | - | chr8_1:84597595-84597614 | None:intergenic | 25.0% |
| !! | TCGTGAATTTTGTGATAATT+TGG | + | chr8_1:84597766-84597785 | Msa1221110:intron | 25.0% |
| ! | AAGGAAAATCAATGAAACAT+GGG | - | chr8_1:84598123-84598142 | None:intergenic | 25.0% |
| !! | ATTTGGGGAACTAATTATTT+TGG | + | chr8_1:84598520-84598539 | Msa1221110:intron | 25.0% |
| ! | CAATAATAACTAAATGGAAC+CGG | + | chr8_1:84598577-84598596 | Msa1221110:intron | 25.0% |
| ! | AATAATAACTAAATGGAACC+GGG | + | chr8_1:84598578-84598597 | Msa1221110:intron | 25.0% |
| ! | AACATGAACTCTAATAAATC+TGG | + | chr8_1:84598612-84598631 | Msa1221110:intron | 25.0% |
| ! | TGGGTATTATTATAGAACAA+CGG | - | chr8_1:84598731-84598750 | None:intergenic | 25.0% |
| ! | ACTTACAAATCTCATAATCT+AGG | - | chr8_1:84598779-84598798 | None:intergenic | 25.0% |
| !!! | TTTGTAAGTGTATTGATTAC+AGG | + | chr8_1:84598790-84598809 | Msa1221110:intron | 25.0% |
| ! | TATATGCAAGTACTTAATGA+TGG | - | chr8_1:84599113-84599132 | None:intergenic | 25.0% |
| !! | ATTTTGCATCATAGTAAAAC+AGG | - | chr8_1:84599359-84599378 | None:intergenic | 25.0% |
| !! | CATAAAGAACTAATTTGCAT+TGG | - | chr8_1:84599442-84599461 | None:intergenic | 25.0% |
| !!! | ATTGAATTGGTGTTTCTTTT+AGG | + | chr8_1:84599485-84599504 | Msa1221110:intron | 25.0% |
| !! | TTTTGAATTTTACAGGGAAT+CGG | + | chr8_1:84599843-84599862 | Msa1221110:intron | 25.0% |
| ! | ACTAATAGGAAAATTTATCC+AGG | - | chr8_1:84600225-84600244 | None:intergenic | 25.0% |
| ! | TACAACTTAATTAGCATGAT+AGG | + | chr8_1:84600328-84600347 | Msa1221110:intron | 25.0% |
| ! | TCACAAAACGTTAAAAAGTT+AGG | - | chr8_1:84600366-84600385 | None:intergenic | 25.0% |
| !!! | GCTTTAAAGAACATTAGAAA+TGG | + | chr8_1:84600517-84600536 | Msa1221110:intron | 25.0% |
| !! | ATGATCATATTGGTAGTAAT+TGG | + | chr8_1:84600772-84600791 | Msa1221110:intron | 25.0% |
| ! | ATCTACTTCTAAATGTAAAG+TGG | - | chr8_1:84600830-84600849 | None:intergenic | 25.0% |
| !! | ATTGTTCTTTTCTGATTTAC+AGG | + | chr8_1:84600898-84600917 | Msa1221110:intron | 25.0% |
| !! | TTGTTCTTTTCTGATTTACA+GGG | + | chr8_1:84600899-84600918 | Msa1221110:intron | 25.0% |
| ! | AATTAGTGATATTGTGATCT+TGG | + | chr8_1:84601128-84601147 | Msa1221110:three_prime_UTR | 25.0% |
| ! | AAAAAGTTATTAATGTCTCG+AGG | + | chr8_1:84601168-84601187 | Msa1221110:three_prime_UTR | 25.0% |
| ! | AAAAGTTATTAATGTCTCGA+GGG | + | chr8_1:84601169-84601188 | Msa1221110:three_prime_UTR | 25.0% |
| !! | ACTTGCATGACATTTAAAAT+TGG | + | chr8_1:84601200-84601219 | Msa1221110:three_prime_UTR | 25.0% |
| !! | GACATTTAAAATTGGTAACT+AGG | + | chr8_1:84601208-84601227 | Msa1221110:three_prime_UTR | 25.0% |
| !!! | GGTGTTTCTTTGTTTTTGTT+GGG | - | chr8_1:84596159-84596178 | None:intergenic | 30.0% |
| AGAGAGAATTGAAGATGATA+GGG | - | chr8_1:84596454-84596473 | None:intergenic | 30.0% | |
| AAGAGAGAATTGAAGATGAT+AGG | - | chr8_1:84596455-84596474 | None:intergenic | 30.0% | |
| !!! | TGGTGTTGTTTTTGAAAATG+TGG | + | chr8_1:84596706-84596725 | Msa1221110:intron | 30.0% |
| !!! | GTTGTTTTTGAAAATGTGGT+AGG | + | chr8_1:84596710-84596729 | Msa1221110:intron | 30.0% |
| !!! | TGTTTGTTTTTGCTCTTTAG+CGG | + | chr8_1:84597133-84597152 | Msa1221110:intron | 30.0% |
| ! | AAGTGTTAACTCTCTTGTTT+AGG | + | chr8_1:84597207-84597226 | Msa1221110:intron | 30.0% |
| ! | TTTTTGCAGCTTCTCAATTT+GGG | - | chr8_1:84597260-84597279 | None:intergenic | 30.0% |
| ! | CTACAACTCCTACTTTAAAA+TGG | + | chr8_1:84597361-84597380 | Msa1221110:intron | 30.0% |
| !!! | GAGCTAATCCATTTTAAAGT+AGG | - | chr8_1:84597372-84597391 | None:intergenic | 30.0% |
| AATACATGAGATGAAGAAGA+AGG | + | chr8_1:84597448-84597467 | Msa1221110:CDS | 30.0% | |
| ! | AAAGGAATACATTAAGTTGC+AGG | + | chr8_1:84597472-84597491 | Msa1221110:CDS | 30.0% |
| ! | TTCTAAGTCTAATAACTTGC+GGG | - | chr8_1:84597594-84597613 | None:intergenic | 30.0% |
| !! | TAGCAGAAAATGCTGATTTA+AGG | + | chr8_1:84597998-84598017 | Msa1221110:CDS | 30.0% |
| !! | AGCAGAAAATGCTGATTTAA+GGG | + | chr8_1:84597999-84598018 | Msa1221110:CDS | 30.0% |
| AGGAAAATCAATGAAACATG+GGG | - | chr8_1:84598122-84598141 | None:intergenic | 30.0% | |
| CAAGGAAAATCAATGAAACA+TGG | - | chr8_1:84598124-84598143 | None:intergenic | 30.0% | |
| ! | GATTTTCCTTGATGTGATTT+TGG | + | chr8_1:84598133-84598152 | Msa1221110:intron | 30.0% |
| GAAAATCCAAAATCACATCA+AGG | - | chr8_1:84598142-84598161 | None:intergenic | 30.0% | |
| TAACGTGTTCATTCTTTAAG+AGG | + | chr8_1:84598209-84598228 | Msa1221110:intron | 30.0% | |
| AAATGAGAACGGAATTAAAG+TGG | - | chr8_1:84598285-84598304 | None:intergenic | 30.0% | |
| CAAAAATTTCTCTGATGCTT+GGG | - | chr8_1:84598437-84598456 | None:intergenic | 30.0% | |
| !!! | ATCAGAGAAATTTTTGGTGT+TGG | + | chr8_1:84598441-84598460 | Msa1221110:intron | 30.0% |
| GGATGGCAATAATAACTAAA+TGG | + | chr8_1:84598571-84598590 | Msa1221110:intron | 30.0% | |
| ! | TCATGTTTTCCTTTTTTTCC+CGG | - | chr8_1:84598599-84598618 | None:intergenic | 30.0% |
| GATTTCTTAAATGCTCCTAA+CGG | + | chr8_1:84598824-84598843 | Msa1221110:CDS | 30.0% | |
| ! | TTTCATTAGTAATGGGAGAT+TGG | - | chr8_1:84598859-84598878 | None:intergenic | 30.0% |
| !! | TTTATGAGTTTGTTACTTGC+AGG | + | chr8_1:84598980-84598999 | Msa1221110:intron | 30.0% |
| ! | ATTTGATCTTCCTTTTCACA+TGG | + | chr8_1:84599007-84599026 | Msa1221110:CDS | 30.0% |
| TGTTTGTGTTTGGTTGTTAA+CGG | + | chr8_1:84599138-84599157 | Msa1221110:intron | 30.0% | |
| GCTTGAAAGTTGAAATATGA+AGG | + | chr8_1:84599160-84599179 | Msa1221110:intron | 30.0% | |
| ! | GCTATTCATCTGATGTTTTA+TGG | + | chr8_1:84599409-84599428 | Msa1221110:intron | 30.0% |
| ! | ATCTGATGTTTTATGGTGTT+TGG | + | chr8_1:84599416-84599435 | Msa1221110:intron | 30.0% |
| ! | ACTTATAAGTCCATGTCTTT+TGG | + | chr8_1:84599525-84599544 | Msa1221110:intron | 30.0% |
| GTGATAATATGTTGTATTGC+AGG | + | chr8_1:84599710-84599729 | Msa1221110:intron | 30.0% | |
| AGAAAACACTAAGAATACCT+TGG | - | chr8_1:84599774-84599793 | None:intergenic | 30.0% | |
| ! | TGTTTGTCTGTTTCATGTTT+TGG | + | chr8_1:84599895-84599914 | Msa1221110:intron | 30.0% |
| ! | GTTTGTCTGTTTCATGTTTT+GGG | + | chr8_1:84599896-84599915 | Msa1221110:intron | 30.0% |
| !! | TTATAGTGTGAATTTGTTGG+TGG | + | chr8_1:84599957-84599976 | Msa1221110:intron | 30.0% |
| CCTCGATAAACATAACTAAT+AGG | - | chr8_1:84600239-84600258 | None:intergenic | 30.0% | |
| CCTATTAGTTATGTTTATCG+AGG | + | chr8_1:84600236-84600255 | Msa1221110:intron | 30.0% | |
| GTTATGTTTATCGAGGTTAT+AGG | + | chr8_1:84600243-84600262 | Msa1221110:intron | 30.0% | |
| TTGATCTGATTAAAATCCAC+TGG | + | chr8_1:84600410-84600429 | Msa1221110:intron | 30.0% | |
| !!! | TCCAGTTTTAAAGATACAAC+TGG | + | chr8_1:84600476-84600495 | Msa1221110:intron | 30.0% |
| !! | ACCAGTTGTATCTTTAAAAC+TGG | - | chr8_1:84600480-84600499 | None:intergenic | 30.0% |
| TTCAACTATTAATGCTGACA+TGG | + | chr8_1:84600580-84600599 | Msa1221110:intron | 30.0% | |
| ATTGGAAGCCTGTAATAATA+TGG | + | chr8_1:84600790-84600809 | Msa1221110:intron | 30.0% | |
| ATTATTAATTGCGTCCCAAT+TGG | + | chr8_1:84600852-84600871 | Msa1221110:intron | 30.0% | |
| AAAGAACAATATCACAACAC+AGG | - | chr8_1:84600888-84600907 | None:intergenic | 30.0% | |
| ! | ACAAGCAAGATTAGTTACAT+GGG | - | chr8_1:84601022-84601041 | None:intergenic | 30.0% |
| !!! | GTTTCTTTGTTTTTGTTGGG+CGG | - | chr8_1:84596156-84596175 | None:intergenic | 35.0% |
| !!! | CGGTGTTTCTTTGTTTTTGT+TGG | - | chr8_1:84596160-84596179 | None:intergenic | 35.0% |
| !! | TCTATGTCTTTGGCTTTAAG+CGG | - | chr8_1:84596216-84596235 | None:intergenic | 35.0% |
| TAAGATCTAAGTCTCCTTCA+GGG | - | chr8_1:84596311-84596330 | None:intergenic | 35.0% | |
| TGAAGGAGACTTAGATCTTA+GGG | + | chr8_1:84596311-84596330 | Msa1221110:CDS | 35.0% | |
| TCTTCAATTCTCTCTTTCGT+AGG | + | chr8_1:84596459-84596478 | Msa1221110:intron | 35.0% | |
| CTTCAATTCTCTCTTTCGTA+GGG | + | chr8_1:84596460-84596479 | Msa1221110:intron | 35.0% | |
| ATTCGCCGATGTAAACAATT+TGG | + | chr8_1:84596536-84596555 | Msa1221110:CDS | 35.0% | |
| AACCAATCACTCGTTACATT+TGG | + | chr8_1:84596579-84596598 | Msa1221110:CDS | 35.0% | |
| AACCAAATGTAACGAGTGAT+TGG | - | chr8_1:84596584-84596603 | None:intergenic | 35.0% | |
| AGAATAGATCAAGTGAAGCA+GGG | - | chr8_1:84596608-84596627 | None:intergenic | 35.0% | |
| TGAACAAAGACAACGGTAAT+TGG | + | chr8_1:84596815-84596834 | Msa1221110:intron | 35.0% | |
| TCTGTGTTTGTTTGTGTGTT+TGG | + | chr8_1:84596866-84596885 | Msa1221110:intron | 35.0% | |
| !!! | TTGTTTTGGGTACAATCTAG+TGG | + | chr8_1:84597164-84597183 | Msa1221110:intron | 35.0% |
| TAAAAATACTGCAGCTCTCA+AGG | + | chr8_1:84597234-84597253 | Msa1221110:CDS | 35.0% | |
| ! | CTTTTTGCAGCTTCTCAATT+TGG | - | chr8_1:84597261-84597280 | None:intergenic | 35.0% |
| GAATTTCAGAGGATGGTTAT+TGG | + | chr8_1:84597289-84597308 | Msa1221110:CDS | 35.0% | |
| TGAGATGAAGAAGAAGGAAA+AGG | + | chr8_1:84597454-84597473 | Msa1221110:CDS | 35.0% | |
| ! | GAATACATTAAGTTGCAGGT+AGG | + | chr8_1:84597476-84597495 | Msa1221110:intron | 35.0% |
| GGGTTCGTGAAATAATTCAA+TGG | - | chr8_1:84597574-84597593 | None:intergenic | 35.0% | |
| GACTTAGAAATATGAAAGGC+TGG | + | chr8_1:84597605-84597624 | Msa1221110:intron | 35.0% | |
| TGGAGAAGAAGAAAGAATCT+AGG | + | chr8_1:84597666-84597685 | Msa1221110:CDS | 35.0% | |
| GAAGAAGAAAGAATCTAGGT+CGG | + | chr8_1:84597670-84597689 | Msa1221110:CDS | 35.0% | |
| AAGAAGAAAGAATCTAGGTC+GGG | + | chr8_1:84597671-84597690 | Msa1221110:CDS | 35.0% | |
| ! | GGAGATAATGAATTTGCTTC+AGG | + | chr8_1:84597697-84597716 | Msa1221110:CDS | 35.0% |
| AACATTCAAAACTACGTGGA+TGG | - | chr8_1:84597729-84597748 | None:intergenic | 35.0% | |
| AAGCAACATTCAAAACTACG+TGG | - | chr8_1:84597733-84597752 | None:intergenic | 35.0% | |
| TTGTGATGTGCATAAACAGA+AGG | + | chr8_1:84597792-84597811 | Msa1221110:intron | 35.0% | |
| ATGTGCATAAACAGAAGGAA+GGG | + | chr8_1:84597797-84597816 | Msa1221110:intron | 35.0% | |
| ACATGGGGAAAAAAACACAT+AGG | - | chr8_1:84598107-84598126 | None:intergenic | 35.0% | |
| ! | TTCATTCTTTAAGAGGTCTC+TGG | + | chr8_1:84598216-84598235 | Msa1221110:intron | 35.0% |
| ! | TCATTCTTTAAGAGGTCTCT+GGG | + | chr8_1:84598217-84598236 | Msa1221110:intron | 35.0% |
| GATAGCATTAGAGAGAAACT+TGG | + | chr8_1:84598346-84598365 | Msa1221110:intron | 35.0% | |
| CCAAAAATTTCTCTGATGCT+TGG | - | chr8_1:84598438-84598457 | None:intergenic | 35.0% | |
| ! | CCAAGCATCAGAGAAATTTT+TGG | + | chr8_1:84598435-84598454 | Msa1221110:intron | 35.0% |
| !!! | AGAGAAATTTTTGGTGTTGG+TGG | + | chr8_1:84598444-84598463 | Msa1221110:intron | 35.0% |
| TAAATGGAACCGGGAAAAAA+AGG | + | chr8_1:84598587-84598606 | Msa1221110:intron | 35.0% | |
| GAACTCTAATAAATCTGGTC+TGG | + | chr8_1:84598617-84598636 | Msa1221110:intron | 35.0% | |
| CAACGATGGATGAAAAACAA+AGG | - | chr8_1:84598663-84598682 | None:intergenic | 35.0% | |
| !! | GTAAGTGTATTGATTACAGG+TGG | + | chr8_1:84598793-84598812 | Msa1221110:intron | 35.0% |
| ! | TTAGTAATGGGAGATTGGTT+TGG | - | chr8_1:84598854-84598873 | None:intergenic | 35.0% |
| AGCAAAGATGGCTTCTATAA+AGG | + | chr8_1:84599058-84599077 | Msa1221110:CDS | 35.0% | |
| AAACAGGATTCTAAATGCCT+TGG | - | chr8_1:84599343-84599362 | None:intergenic | 35.0% | |
| ! | TATAAGTCCATGTCTTTTGG+TGG | + | chr8_1:84599528-84599547 | Msa1221110:intron | 35.0% |
| ! | ATAAGTCCATGTCTTTTGGT+GGG | + | chr8_1:84599529-84599548 | Msa1221110:intron | 35.0% |
| TCTCTCCTTTAACAAATCCA+CGG | + | chr8_1:84599587-84599606 | Msa1221110:intron | 35.0% | |
| !! | AAAAGCCGTGGATTTGTTAA+AGG | - | chr8_1:84599595-84599614 | None:intergenic | 35.0% |
| AAGAAAGAAGAAAAAAGCCG+TGG | - | chr8_1:84599607-84599626 | None:intergenic | 35.0% | |
| TTACTGCAGCAGTACATATT+AGG | - | chr8_1:84599812-84599831 | None:intergenic | 35.0% | |
| CATAAAATACATACCTCAGC+TGG | - | chr8_1:84599871-84599890 | None:intergenic | 35.0% | |
| !!! | TCTGTTTCATGTTTTGGGTT+GGG | + | chr8_1:84599901-84599920 | Msa1221110:intron | 35.0% |
| !! | CCATGCAACAATTTTGTTTG+AGG | - | chr8_1:84600049-84600068 | None:intergenic | 35.0% |
| CCTCAAACAAAATTGTTGCA+TGG | + | chr8_1:84600046-84600065 | Msa1221110:intron | 35.0% | |
| TAAGAAACCCAAACTCAGAT+AGG | - | chr8_1:84600077-84600096 | None:intergenic | 35.0% | |
| AGAGTGCAACTTTCAAAAGA+AGG | + | chr8_1:84600286-84600305 | Msa1221110:CDS | 35.0% | |
| AAATGAGTTGTTCCCACAAT+AGG | - | chr8_1:84600440-84600459 | None:intergenic | 35.0% | |
| !! | AGATACAACTGGTTTGTACT+AGG | + | chr8_1:84600487-84600506 | Msa1221110:intron | 35.0% |
| AGTGTTGTGTAGTTAAATGC+CGG | - | chr8_1:84600705-84600724 | None:intergenic | 35.0% | |
| GTATCATCGCATGATCATAT+TGG | + | chr8_1:84600762-84600781 | Msa1221110:intron | 35.0% | |
| AATATCACAACACAGGCATA+AGG | - | chr8_1:84600881-84600900 | None:intergenic | 35.0% | |
| !! | TAACTATATTGGCTCTGTAG+TGG | + | chr8_1:84600979-84600998 | Msa1221110:three_prime_UTR | 35.0% |
| ! | GACAAGCAAGATTAGTTACA+TGG | - | chr8_1:84601023-84601042 | None:intergenic | 35.0% |
| TGTTACATAAGAACTAAGGG+GGG | - | chr8_1:84601058-84601077 | None:intergenic | 35.0% | |
| CTGTTACATAAGAACTAAGG+GGG | - | chr8_1:84601059-84601078 | None:intergenic | 35.0% | |
| CCTGTTACATAAGAACTAAG+GGG | - | chr8_1:84601060-84601079 | None:intergenic | 35.0% | |
| GCCTGTTACATAAGAACTAA+GGG | - | chr8_1:84601061-84601080 | None:intergenic | 35.0% | |
| AAGATCTAAGTCTCCTTCAG+GGG | - | chr8_1:84596310-84596329 | None:intergenic | 40.0% | |
| CTAAGATCTAAGTCTCCTTC+AGG | - | chr8_1:84596312-84596331 | None:intergenic | 40.0% | |
| CTGAAGGAGACTTAGATCTT+AGG | + | chr8_1:84596310-84596329 | Msa1221110:CDS | 40.0% | |
| GTGAAAGCAGAATGAGAAGA+TGG | - | chr8_1:84596413-84596432 | None:intergenic | 40.0% | |
| TCTCATTCTGCTTTCACAAC+CGG | + | chr8_1:84596416-84596435 | Msa1221110:CDS | 40.0% | |
| GAGAATAGATCAAGTGAAGC+AGG | - | chr8_1:84596609-84596628 | None:intergenic | 40.0% | |
| TGTGGTAGGTTTCTATAGCA+AGG | + | chr8_1:84596724-84596743 | Msa1221110:intron | 40.0% | |
| CTGCGAATGAACAAAGACAA+CGG | + | chr8_1:84596808-84596827 | Msa1221110:CDS | 40.0% | |
| GTCGGATATATCAAGATACG+AGG | + | chr8_1:84596926-84596945 | Msa1221110:CDS | 40.0% | |
| GATAGCGACGATAACTAGAA+CGG | + | chr8_1:84596995-84597014 | Msa1221110:CDS | 40.0% | |
| !!! | TTGTTTTTGCTCTTTAGCGG+TGG | + | chr8_1:84597136-84597155 | Msa1221110:intron | 40.0% |
| !! | TGTTTTTGCTCTTTAGCGGT+GGG | + | chr8_1:84597137-84597156 | Msa1221110:intron | 40.0% |
| !! | TAGCGGTGGGATTTTTGTTT+TGG | + | chr8_1:84597150-84597169 | Msa1221110:intron | 40.0% |
| !!! | AGCGGTGGGATTTTTGTTTT+GGG | + | chr8_1:84597151-84597170 | Msa1221110:intron | 40.0% |
| !! | TTTTGGGTACAATCTAGTGG+TGG | + | chr8_1:84597167-84597186 | Msa1221110:intron | 40.0% |
| TTGAGAAGCTGCAAAAAGAG+AGG | + | chr8_1:84597263-84597282 | Msa1221110:CDS | 40.0% | |
| TGAGAAGCTGCAAAAAGAGA+GGG | + | chr8_1:84597264-84597283 | Msa1221110:CDS | 40.0% | |
| AAGAGAGGGATGAATTTCAG+AGG | + | chr8_1:84597278-84597297 | Msa1221110:CDS | 40.0% | |
| ! | GAGGATGGTTATTGGTAATC+AGG | + | chr8_1:84597297-84597316 | Msa1221110:CDS | 40.0% |
| ! | ATTCGTGCTGCTATATGGTA+GGG | + | chr8_1:84597542-84597561 | Msa1221110:intron | 40.0% |
| !! | GAGACTAAACCAAGTGTTGA+TGG | + | chr8_1:84597646-84597665 | Msa1221110:CDS | 40.0% |
| TCTTCTTCTCCATCAACACT+TGG | - | chr8_1:84597658-84597677 | None:intergenic | 40.0% | |
| GATGTGCATAAACAGAAGGA+AGG | + | chr8_1:84597796-84597815 | Msa1221110:intron | 40.0% | |
| ATTGTTGAGATCAATGCAGG+TGG | + | chr8_1:84598023-84598042 | Msa1221110:intron | 40.0% | |
| TTGTTGAGATCAATGCAGGT+GGG | + | chr8_1:84598024-84598043 | Msa1221110:intron | 40.0% | |
| AGCATTAGAGAGAAACTTGG+AGG | + | chr8_1:84598349-84598368 | Msa1221110:intron | 40.0% | |
| TGGAGGAAAAACCTCATGAA+TGG | + | chr8_1:84598366-84598385 | Msa1221110:intron | 40.0% | |
| AGGAAAAACCTCATGAATGG+TGG | + | chr8_1:84598369-84598388 | Msa1221110:intron | 40.0% | |
| CTCATGAATGGTGGTTGTAT+GGG | + | chr8_1:84598378-84598397 | Msa1221110:intron | 40.0% | |
| ! | AATGGTGGTTGTATGGGTTT+TGG | + | chr8_1:84598384-84598403 | Msa1221110:intron | 40.0% |
| ! | TTGGTGGTTGCATATCTCAT+TGG | + | chr8_1:84598403-84598422 | Msa1221110:intron | 40.0% |
| !! | TTGGTGATGCAAAGTCCAAT+TGG | + | chr8_1:84598539-84598558 | Msa1221110:intron | 40.0% |
| TGATGCAAAGTCCAATTGGA+CGG | + | chr8_1:84598543-84598562 | Msa1221110:intron | 40.0% | |
| CTCTAATAAATCTGGTCTGG+TGG | + | chr8_1:84598620-84598639 | Msa1221110:intron | 40.0% | |
| CTGTACTTCCTTCCTTGTAA+AGG | + | chr8_1:84598705-84598724 | Msa1221110:intron | 40.0% | |
| ATAGAACAACGGCCTTTACA+AGG | - | chr8_1:84598720-84598739 | None:intergenic | 40.0% | |
| TAATCCTTCACATTCTCCGA+TGG | + | chr8_1:84598889-84598908 | Msa1221110:CDS | 40.0% | |
| GAGTTTGACAATGCGAACAA+AGG | - | chr8_1:84598951-84598970 | None:intergenic | 40.0% | |
| TGATCTCTAGCCATGTGAAA+AGG | - | chr8_1:84599020-84599039 | None:intergenic | 40.0% | |
| AGAGAGTCTAAGAGCAAAGA+TGG | + | chr8_1:84599046-84599065 | Msa1221110:CDS | 40.0% | |
| ! | TTGAAATATGAAGGAGCGCA+TGG | + | chr8_1:84599169-84599188 | Msa1221110:intron | 40.0% |
| CTTTCTGAGCATCTTGCAAT+TGG | - | chr8_1:84599196-84599215 | None:intergenic | 40.0% | |
| ATTGCAAGATGCTCAGAAAG+AGG | + | chr8_1:84599196-84599215 | Msa1221110:CDS | 40.0% | |
| !! | AAGCTCAACTTGTTGAAGCA+AGG | + | chr8_1:84599261-84599280 | Msa1221110:CDS | 40.0% |
| !! | AAGGAGCATTATACAAGAGC+AGG | + | chr8_1:84599280-84599299 | Msa1221110:CDS | 40.0% |
| ! | AGTGCTGGATCATGCTAATT+TGG | + | chr8_1:84599659-84599678 | Msa1221110:intron | 40.0% |
| AACATCTTGCAAAGTCTGAC+AGG | + | chr8_1:84599748-84599767 | Msa1221110:CDS | 40.0% | |
| !! | GTCTGTTTCATGTTTTGGGT+TGG | + | chr8_1:84599900-84599919 | Msa1221110:intron | 40.0% |
| !! | AGTGTGAATTTGTTGGTGGT+TGG | + | chr8_1:84599961-84599980 | Msa1221110:intron | 40.0% |
| !! | GGTTGGTGGAAAAGTATCTT+TGG | + | chr8_1:84599978-84599997 | Msa1221110:intron | 40.0% |
| TGGCTAATCCTATCTGAGTT+TGG | + | chr8_1:84600066-84600085 | Msa1221110:intron | 40.0% | |
| GGCTAATCCTATCTGAGTTT+GGG | + | chr8_1:84600067-84600086 | Msa1221110:intron | 40.0% | |
| !! | TGGGAGGTTAGGATTTGTTT+TGG | + | chr8_1:84600189-84600208 | Msa1221110:intron | 40.0% |
| !! | GGGAGGTTAGGATTTGTTTT+GGG | + | chr8_1:84600190-84600209 | Msa1221110:intron | 40.0% |
| !!! | GGAGGTTAGGATTTGTTTTG+GGG | + | chr8_1:84600191-84600210 | Msa1221110:intron | 40.0% |
| !!! | GAGGTTAGGATTTGTTTTGG+GGG | + | chr8_1:84600192-84600211 | Msa1221110:intron | 40.0% |
| !!! | AGTTTTTTTGACAACCGCCA+CGG | - | chr8_1:84600661-84600680 | None:intergenic | 40.0% |
| TATGCAACTAACATGGCTGA+GGG | + | chr8_1:84600924-84600943 | Msa1221110:CDS | 40.0% | |
| ! | CCCCTTAGTTCTTATGTAAC+AGG | + | chr8_1:84601057-84601076 | Msa1221110:three_prime_UTR | 40.0% |
| GGCCTGTTACATAAGAACTA+AGG | - | chr8_1:84601062-84601081 | None:intergenic | 40.0% | |
| TTATGTAACAGGCCATCGTA+TGG | + | chr8_1:84601068-84601087 | Msa1221110:three_prime_UTR | 40.0% | |
| AATGACATTCGACCATACGA+TGG | - | chr8_1:84601083-84601102 | None:intergenic | 40.0% | |
| CTCATTCTGCTTTCACAACC+GGG | + | chr8_1:84596417-84596436 | Msa1221110:CDS | 45.0% | |
| !!! | GATAGGGTTTTGAACTGACC+CGG | - | chr8_1:84596438-84596457 | None:intergenic | 45.0% |
| GATACGAGGCTAAAGTTGAG+AGG | + | chr8_1:84596940-84596959 | Msa1221110:CDS | 45.0% | |
| GCTAAAGTTGAGAGGCTTGA+TGG | + | chr8_1:84596948-84596967 | Msa1221110:CDS | 45.0% | |
| GAGGGATGAATTTCAGAGGA+TGG | + | chr8_1:84597282-84597301 | Msa1221110:CDS | 45.0% | |
| !! | GATCGGTGCTAAAGCAAGTT+AGG | + | chr8_1:84597417-84597436 | Msa1221110:intron | 45.0% |
| ! | TGGTGATTCGTGCTGCTATA+TGG | + | chr8_1:84597537-84597556 | Msa1221110:intron | 45.0% |
| ! | GATTCGTGCTGCTATATGGT+AGG | + | chr8_1:84597541-84597560 | Msa1221110:intron | 45.0% |
| ! | GGCTGGTACATTTTACTTGC+AGG | + | chr8_1:84597622-84597641 | Msa1221110:intron | 45.0% |
| TGCATAAACAGAAGGAAGGG+AGG | + | chr8_1:84597800-84597819 | Msa1221110:intron | 45.0% | |
| ATGAAAGGTGGACGCTTATG+AGG | + | chr8_1:84597957-84597976 | Msa1221110:intron | 45.0% | |
| GGCATTGTTGAGATCAATGC+AGG | + | chr8_1:84598020-84598039 | Msa1221110:CDS | 45.0% | |
| CCATACAACCACCATTCATG+AGG | - | chr8_1:84598380-84598399 | None:intergenic | 45.0% | |
| CCTCATGAATGGTGGTTGTA+TGG | + | chr8_1:84598377-84598396 | Msa1221110:intron | 45.0% | |
| GTGGTTGCATATCTCATTGG+AGG | + | chr8_1:84598406-84598425 | Msa1221110:intron | 45.0% | |
| AAGTCCAATTGGACGGAGAT+TGG | + | chr8_1:84598550-84598569 | Msa1221110:intron | 45.0% | |
| AACAACGGCCTTTACAAGGA+AGG | - | chr8_1:84598716-84598735 | None:intergenic | 45.0% | |
| !! | TTGAGTACCCTGCTTTAGAG+GGG | - | chr8_1:84598756-84598775 | None:intergenic | 45.0% |
| ! | GTTGAGTACCCTGCTTTAGA+GGG | - | chr8_1:84598757-84598776 | None:intergenic | 45.0% |
| !! | GATTGGTTTGGTAGTCCGTT+AGG | - | chr8_1:84598842-84598861 | None:intergenic | 45.0% |
| TTCTCCGATGGTTGGAAGAA+CGG | + | chr8_1:84598901-84598920 | Msa1221110:CDS | 45.0% | |
| CATACCGTTCTTCCAACCAT+CGG | - | chr8_1:84598908-84598927 | None:intergenic | 45.0% | |
| GAAAGAGGCAGAAGTCACTT+CGG | + | chr8_1:84599211-84599230 | Msa1221110:CDS | 45.0% | |
| TCTCGCAATTGCAGCAAGTT+AGG | + | chr8_1:84599316-84599335 | Msa1221110:intron | 45.0% | |
| ATTGCAGCAAGTTAGGTCCA+AGG | + | chr8_1:84599323-84599342 | Msa1221110:intron | 45.0% | |
| !! | GTGAATTTGTTGGTGGTTGG+TGG | + | chr8_1:84599964-84599983 | Msa1221110:intron | 45.0% |
| TCGATTACGCGCATGCAAAT+GGG | + | chr8_1:84600170-84600189 | Msa1221110:intron | 45.0% | |
| !! | ATCCACTGGCTTTCCTATTG+TGG | + | chr8_1:84600424-84600443 | Msa1221110:intron | 45.0% |
| !! | TCCACTGGCTTTCCTATTGT+GGG | + | chr8_1:84600425-84600444 | Msa1221110:intron | 45.0% |
| CTATCAACACCACAGAGACA+CGG | - | chr8_1:84600607-84600626 | None:intergenic | 45.0% | |
| !! | GTGTCTCTGTGGTGTTGATA+GGG | + | chr8_1:84600606-84600625 | Msa1221110:intron | 45.0% |
| !! | TGTCTCTGTGGTGTTGATAG+GGG | + | chr8_1:84600607-84600626 | Msa1221110:intron | 45.0% |
| TAGTTAAATGCCGGTCATGG+CGG | - | chr8_1:84600696-84600715 | None:intergenic | 45.0% | |
| GTGTAGTTAAATGCCGGTCA+TGG | - | chr8_1:84600699-84600718 | None:intergenic | 45.0% | |
| CAGGCATAAGGTGACCAATT+GGG | - | chr8_1:84600869-84600888 | None:intergenic | 45.0% | |
| ACAGGCATAAGGTGACCAAT+TGG | - | chr8_1:84600870-84600889 | None:intergenic | 45.0% | |
| ! | CAGGGAGTATGCAACTAACA+TGG | + | chr8_1:84600917-84600936 | Msa1221110:intron | 45.0% |
| GTATGCAACTAACATGGCTG+AGG | + | chr8_1:84600923-84600942 | Msa1221110:CDS | 45.0% | |
| !! | GATCTTGGAAGTGCTTCTAG+AGG | + | chr8_1:84601143-84601162 | Msa1221110:three_prime_UTR | 45.0% |
| !! | TTATTTATTATAATAATGAA+AGG | + | chr8_1:84597942-84597961 | Msa1221110:intron | 5.0% |
| ACAACAATGCCTTCCCCTGA+AGG | + | chr8_1:84596294-84596313 | Msa1221110:exon | 50.0% | |
| TCTAAGTCTCCTTCAGGGGA+AGG | - | chr8_1:84596306-84596325 | None:intergenic | 50.0% | |
| CGACGATAACTAGAACGGTG+AGG | + | chr8_1:84597000-84597019 | Msa1221110:intron | 50.0% | |
| GAAAGAATCTAGGTCGGGCA+TGG | + | chr8_1:84597676-84597695 | Msa1221110:CDS | 50.0% | |
| AGGCAACGTGGAACATGGAA+TGG | + | chr8_1:84597820-84597839 | Msa1221110:CDS | 50.0% | |
| GGCAACGTGGAACATGGAAT+GGG | + | chr8_1:84597821-84597840 | Msa1221110:CDS | 50.0% | |
| !! | GGTGGTTGTATGGGTTTTGG+TGG | + | chr8_1:84598387-84598406 | Msa1221110:intron | 50.0% |
| !! | TGTTGGTGGTTGTTGCTGAC+TGG | + | chr8_1:84598458-84598477 | Msa1221110:intron | 50.0% |
| CCATCCAATCTCCGTCCAAT+TGG | - | chr8_1:84598557-84598576 | None:intergenic | 50.0% | |
| CCAATTGGACGGAGATTGGA+TGG | + | chr8_1:84598554-84598573 | Msa1221110:intron | 50.0% | |
| !! | TGAGTACCCTGCTTTAGAGG+GGG | - | chr8_1:84598755-84598774 | None:intergenic | 50.0% |
| GGTTGAGTACCCTGCTTTAG+AGG | - | chr8_1:84598758-84598777 | None:intergenic | 50.0% | |
| CCAACCATCGGAGAATGTGA+AGG | - | chr8_1:84598896-84598915 | None:intergenic | 50.0% | |
| CCTTCACATTCTCCGATGGT+TGG | + | chr8_1:84598893-84598912 | Msa1221110:CDS | 50.0% | |
| CGATGGTTGGAAGAACGGTA+TGG | + | chr8_1:84598906-84598925 | Msa1221110:intron | 50.0% | |
| !! | GCACTGAGCAAAGTACTGTC+AGG | - | chr8_1:84599644-84599663 | None:intergenic | 50.0% |
| GACAGTACTTTGCTCAGTGC+TGG | + | chr8_1:84599644-84599663 | Msa1221110:intron | 50.0% | |
| TTGCAAAGTCTGACAGGCCA+AGG | + | chr8_1:84599754-84599773 | Msa1221110:CDS | 50.0% | |
| GTCGATTACGCGCATGCAAA+TGG | + | chr8_1:84600169-84600188 | Msa1221110:intron | 50.0% | |
| ATTACGCGCATGCAAATGGG+AGG | + | chr8_1:84600173-84600192 | Msa1221110:intron | 50.0% | |
| !!! | TGTTTTGGGGGTCTTACTCC+TGG | + | chr8_1:84600204-84600223 | Msa1221110:intron | 50.0% |
| TCCCACAATAGGAAAGCCAG+TGG | - | chr8_1:84600429-84600448 | None:intergenic | 50.0% | |
| ATTCCTCTGCTAGCAGCAGA+AGG | + | chr8_1:84600555-84600574 | Msa1221110:intron | 50.0% | |
| TTCCTCTGCTAGCAGCAGAA+GGG | + | chr8_1:84600556-84600575 | Msa1221110:intron | 50.0% | |
| !! | CGTGTCTCTGTGGTGTTGAT+AGG | + | chr8_1:84600605-84600624 | Msa1221110:intron | 50.0% |
| !! | TAACATGGCTGAGGGTACTC+AGG | + | chr8_1:84600932-84600951 | Msa1221110:CDS | 50.0% |
| AAGGGAGGCAACGTGGAACA+TGG | + | chr8_1:84597815-84597834 | Msa1221110:CDS | 55.0% | |
| !! | GAGTACCCTGCTTTAGAGGG+GGG | - | chr8_1:84598754-84598773 | None:intergenic | 55.0% |
| GCTGCACCCACCAAAAGACA+TGG | - | chr8_1:84599538-84599557 | None:intergenic | 55.0% | |
| GCGCATGCAAATGGGAGGTT+AGG | + | chr8_1:84600178-84600197 | Msa1221110:intron | 55.0% | |
| TCCTCTGCTAGCAGCAGAAG+GGG | + | chr8_1:84600557-84600576 | Msa1221110:intron | 55.0% | |
| TGACATGGTCCGTGTCTCTG+TGG | + | chr8_1:84600595-84600614 | Msa1221110:intron | 55.0% | |
| !! | CTCTGTGGTGTTGATAGGGG+TGG | + | chr8_1:84600610-84600629 | Msa1221110:intron | 55.0% |
| CACACCATTTCCGCCATGAC+CGG | + | chr8_1:84600683-84600702 | Msa1221110:intron | 55.0% | |
| ! | AATGCCGGTCATGGCGGAAA+TGG | - | chr8_1:84600690-84600709 | None:intergenic | 55.0% |
| CTAAGGGGGGCAGTGAAGAA+TGG | - | chr8_1:84601045-84601064 | None:intergenic | 55.0% | |
| CAGAAGGAAGGGAGGCAACG+TGG | + | chr8_1:84597808-84597827 | Msa1221110:intron | 60.0% | |
| !! | TACCCACCCCCCTCTAAAGC+AGG | + | chr8_1:84598745-84598764 | Msa1221110:intron | 60.0% |
| !! | ACCCACCCCCCTCTAAAGCA+GGG | + | chr8_1:84598746-84598765 | Msa1221110:intron | 60.0% |
| !! | ACCCTGCTTTAGAGGGGGGT+GGG | - | chr8_1:84598750-84598769 | None:intergenic | 60.0% |
| !! | TACCCTGCTTTAGAGGGGGG+TGG | - | chr8_1:84598751-84598770 | None:intergenic | 60.0% |
| ACCCCTTCTGCTGCTAGCAG+AGG | - | chr8_1:84600561-84600580 | None:intergenic | 60.0% | |
| !! | GGTGTTGATAGGGGTGGTGC+TGG | + | chr8_1:84600616-84600635 | Msa1221110:intron | 60.0% |
| ! | CGGTCATGGCGGAAATGGTG+TGG | - | chr8_1:84600685-84600704 | None:intergenic | 60.0% |
| CAGGGAATCGGCACCAGCTG+AGG | + | chr8_1:84599855-84599874 | Msa1221110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84596153 | 84601238 | 84596153 | ID=Msa1221110;Name=Msa1221110 |
| chr8_1 | mRNA | 84596153 | 84601238 | 84596153 | ID=Msa1221110-mRNA-1;Parent=Msa1221110;Name=Msa1221110-mRNA-1;_AED=0.27;_eAED=0.27;_QI=147|0.81|0.88|1|1|1|17|267|409 |
| chr8_1 | exon | 84596153 | 84596332 | 84596153 | ID=Msa1221110-mRNA-1:exon:30395;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84596410 | 84596438 | 84596410 | ID=Msa1221110-mRNA-1:exon:30396;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84596527 | 84596638 | 84596527 | ID=Msa1221110-mRNA-1:exon:30397;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84596732 | 84596829 | 84596732 | ID=Msa1221110-mRNA-1:exon:30398;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84596920 | 84597016 | 84596920 | ID=Msa1221110-mRNA-1:exon:30399;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84597229 | 84597318 | 84597229 | ID=Msa1221110-mRNA-1:exon:30400;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84597431 | 84597493 | 84597431 | ID=Msa1221110-mRNA-1:exon:30401;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84597644 | 84597733 | 84597644 | ID=Msa1221110-mRNA-1:exon:30402;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84597811 | 84597876 | 84597811 | ID=Msa1221110-mRNA-1:exon:30403;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84597964 | 84598041 | 84597964 | ID=Msa1221110-mRNA-1:exon:30404;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84598812 | 84598922 | 84598812 | ID=Msa1221110-mRNA-1:exon:30405;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84599002 | 84599079 | 84599002 | ID=Msa1221110-mRNA-1:exon:30406;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84599182 | 84599301 | 84599182 | ID=Msa1221110-mRNA-1:exon:30407;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84599732 | 84599775 | 84599732 | ID=Msa1221110-mRNA-1:exon:30408;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84599858 | 84599876 | 84599858 | ID=Msa1221110-mRNA-1:exon:30409;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84600258 | 84600307 | 84600258 | ID=Msa1221110-mRNA-1:exon:30410;Parent=Msa1221110-mRNA-1 |
| chr8_1 | exon | 84600920 | 84601238 | 84600920 | ID=Msa1221110-mRNA-1:exon:30411;Parent=Msa1221110-mRNA-1 |
| chr8_1 | five_prime_UTR | 84596153 | 84596299 | 84596153 | ID=Msa1221110-mRNA-1:five_prime_utr;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84596300 | 84596332 | 84596300 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84596410 | 84596438 | 84596410 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84596527 | 84596638 | 84596527 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84596732 | 84596829 | 84596732 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84596920 | 84597016 | 84596920 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84597229 | 84597318 | 84597229 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84597431 | 84597493 | 84597431 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84597644 | 84597733 | 84597644 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84597811 | 84597876 | 84597811 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84597964 | 84598041 | 84597964 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84598812 | 84598922 | 84598812 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84599002 | 84599079 | 84599002 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84599182 | 84599301 | 84599182 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84599732 | 84599775 | 84599732 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84599858 | 84599876 | 84599858 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84600258 | 84600307 | 84600258 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | CDS | 84600920 | 84600971 | 84600920 | ID=Msa1221110-mRNA-1:cds;Parent=Msa1221110-mRNA-1 |
| chr8_1 | three_prime_UTR | 84600972 | 84601238 | 84600972 | ID=Msa1221110-mRNA-1:three_prime_utr;Parent=Msa1221110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
