Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225090 | XP_013458081.1 | 95.037 | 403 | 20 | 0 | 38 | 440 | 1 | 403 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1225090 | Msa1329860 | 0.928051 | 4.982903e-92 | -8.615850e-47 |
| Msa1225090 | Msa1405240 | 0.967587 | 1.752375e-127 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225090 | MtrunA17_Chr4g0063231 | 83.478 | 345 | 18 | 1 | 38 | 382 | 1 | 306 | 0.0 | 579 |
| Msa1225090 | MtrunA17_Chr3g0138081 | 31.595 | 326 | 196 | 8 | 38 | 357 | 1 | 305 | 3.43e-32 | 125 |
| Msa1225090 | MtrunA17_Chr1g0192931 | 29.710 | 138 | 92 | 3 | 38 | 172 | 54 | 189 | 4.40e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1225090 | AT4G32440.1 | 39.152 | 401 | 208 | 9 | 38 | 433 | 1 | 370 | 4.27e-75 | 239 |
| Msa1225090 | AT4G32440.2 | 38.579 | 394 | 206 | 9 | 38 | 426 | 1 | 363 | 6.68e-71 | 229 |
| Msa1225090 | AT5G20030.2 | 37.685 | 406 | 170 | 12 | 38 | 440 | 1 | 326 | 6.75e-65 | 211 |
| Msa1225090 | AT5G20030.1 | 37.685 | 406 | 170 | 12 | 38 | 440 | 1 | 326 | 6.75e-65 | 211 |
| Msa1225090 | AT4G32440.3 | 33.987 | 306 | 172 | 7 | 38 | 336 | 1 | 283 | 2.47e-41 | 149 |
| Msa1225090 | AT2G25590.1 | 47.101 | 138 | 71 | 2 | 38 | 174 | 1 | 137 | 1.51e-34 | 132 |
Find 104 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTGTTCCCAACTTAA+AGG | 0.192880 | 8_1:+90377750 | None:intergenic |
| AAGTTAGCAAATTTGATATT+CGG | 0.271483 | 8_1:-90378898 | Msa1225090:CDS |
| TGCATTGCTGTTAGGCTACT+TGG | 0.324453 | 8_1:-90378938 | Msa1225090:CDS |
| TACAGGAAATTGCAATTTAT+AGG | 0.333504 | 8_1:+90377950 | None:intergenic |
| GCTGCTGTGGGTTGTTCATT+TGG | 0.339068 | 8_1:-90378047 | Msa1225090:CDS |
| CACTTGAACTTGTGGAGAAT+TGG | 0.339132 | 8_1:-90379039 | Msa1225090:CDS |
| AGCAAAGCTGAGGTGCCTTC+TGG | 0.348934 | 8_1:-90379196 | Msa1225090:CDS |
| GAAGAATGGGATTGTTGATA+TGG | 0.349536 | 8_1:-90378093 | Msa1225090:CDS |
| AGTTAGCAAATTTGATATTC+GGG | 0.355743 | 8_1:-90378897 | Msa1225090:CDS |
| AAAAGAAAGAACTTGATAAT+CGG | 0.363802 | 8_1:-90378337 | Msa1225090:CDS |
| CTGAACCTCTGCCAAAGTTA+AGG | 0.366412 | 8_1:-90378250 | Msa1225090:CDS |
| AATTGGCAAGGAAAATTCAT+AGG | 0.383309 | 8_1:-90377824 | Msa1225090:CDS |
| TCGTCTTCTCCATCGGAATA+AGG | 0.390921 | 8_1:-90380079 | Msa1225090:intron |
| GGTTCTGCTAGCTGTGATAA+TGG | 0.406897 | 8_1:-90378434 | Msa1225090:CDS |
| CGCAGAGATCATCGGTGGTA+AGG | 0.424268 | 8_1:-90379161 | Msa1225090:CDS |
| CCGTTACACTGTTATGTATG+AGG | 0.427399 | 8_1:-90379134 | Msa1225090:CDS |
| CTGAGGTGCCTTCTGGCTCC+TGG | 0.431731 | 8_1:-90379189 | Msa1225090:CDS |
| TGAACCTCTGCCAAAGTTAA+GGG | 0.432025 | 8_1:-90378249 | Msa1225090:CDS |
| CCGTCCCACACGAAAAGAAT+TGG | 0.434168 | 8_1:-90377841 | Msa1225090:CDS |
| TCCTCAATTGCCCTTAACTT+TGG | 0.435600 | 8_1:+90378239 | None:intergenic |
| TCAAATGGACCTGCAGATAC+AGG | 0.435709 | 8_1:+90377933 | None:intergenic |
| TCTTCAGCTGGCACATGTCT+TGG | 0.438373 | 8_1:+90378143 | None:intergenic |
| ATTGAGGCATTGTTTGCGTC+AGG | 0.438499 | 8_1:-90377774 | Msa1225090:CDS |
| GAACTCTAACCCTGAGGAAA+AGG | 0.446066 | 8_1:+90377596 | None:intergenic |
| CTGTAAACAGTAGGAAGAAT+GGG | 0.451080 | 8_1:-90378106 | Msa1225090:CDS |
| AAAGAAAGAACTTGATAATC+GGG | 0.459096 | 8_1:-90378336 | Msa1225090:CDS |
| TAGTATTCCTTTCAGATGAC+AGG | 0.465640 | 8_1:-90377643 | Msa1225090:exon |
| TTGCAATTTCCTGTATCTGC+AGG | 0.466258 | 8_1:-90377942 | Msa1225090:CDS |
| TGCGTCAGGACCTTTAAGTT+GGG | 0.468318 | 8_1:-90377760 | Msa1225090:CDS |
| TTGCGTCAGGACCTTTAAGT+TGG | 0.469617 | 8_1:-90377761 | Msa1225090:CDS |
| AAATCATAAAACATAAATGA+AGG | 0.470683 | 8_1:+90377515 | None:intergenic |
| TTGTACATGTTTAAGTGGTG+TGG | 0.472803 | 8_1:+90378178 | None:intergenic |
| TGAGGGATTTCGAGGTCCTA+TGG | 0.472833 | 8_1:-90379116 | Msa1225090:CDS |
| TCTGTAAACAGTAGGAAGAA+TGG | 0.480789 | 8_1:-90378107 | Msa1225090:CDS |
| TCAGAATTTCTCTTGGAAGA+TGG | 0.485444 | 8_1:-90378990 | Msa1225090:CDS |
| GATGATCTCTGCGCATAGCC+AGG | 0.490942 | 8_1:+90379171 | None:intergenic |
| ACGATCATGCGATTCAAGAA+AGG | 0.491296 | 8_1:-90379238 | Msa1225090:CDS |
| TGTACATGTTTAAGTGGTGT+GGG | 0.498268 | 8_1:+90378179 | None:intergenic |
| GCCAAAGTTAAGGGCAATTG+AGG | 0.503706 | 8_1:-90378240 | Msa1225090:CDS |
| CGATCATGCGATTCAAGAAA+GGG | 0.505344 | 8_1:-90379237 | Msa1225090:CDS |
| GAACTGTCTACATCTTCAAA+TGG | 0.507082 | 8_1:+90377918 | None:intergenic |
| CATGTTTAAGTGGTGTGGGT+GGG | 0.509663 | 8_1:+90378183 | None:intergenic |
| TTCACTCTCTTCTTCTTATG+CGG | 0.511891 | 8_1:+90380128 | None:intergenic |
| TTAAGGGCAATTGAGGATGA+TGG | 0.517889 | 8_1:-90378233 | Msa1225090:CDS |
| AGATGTAACAAAGCAAGAGT+TGG | 0.522342 | 8_1:-90378209 | Msa1225090:CDS |
| TCCTATGGATGAGGAAATTG+TGG | 0.522986 | 8_1:-90379101 | Msa1225090:CDS |
| AGTTCAAGTGGCGGCGGACA+CGG | 0.523763 | 8_1:+90379052 | None:intergenic |
| GAGGAAACAAATTGCTGCTG+TGG | 0.532654 | 8_1:-90378060 | Msa1225090:CDS |
| GCGCATAGCCAGGAGCCAGA+AGG | 0.534346 | 8_1:+90379181 | None:intergenic |
| TTTCTCTTGGAAGATGGCTA+CGG | 0.534357 | 8_1:-90378984 | Msa1225090:CDS |
| AAGTATATCAGAATTTCTCT+TGG | 0.536145 | 8_1:-90378997 | Msa1225090:CDS |
| GCGATTCAAGAAAGGGACTA+AGG | 0.538395 | 8_1:-90379230 | Msa1225090:CDS |
| TAGGCTACTTGGATCTTCTG+TGG | 0.539977 | 8_1:-90378927 | Msa1225090:CDS |
| TCCGCCGCCACTTGAACTTG+TGG | 0.540574 | 8_1:-90379047 | Msa1225090:CDS |
| CGTTACACTGTTATGTATGA+GGG | 0.542469 | 8_1:-90379133 | Msa1225090:CDS |
| TGCCTATCGTTGTACAATTG+AGG | 0.543589 | 8_1:-90377790 | Msa1225090:CDS |
| ACATGTTTAAGTGGTGTGGG+TGG | 0.546027 | 8_1:+90378182 | None:intergenic |
| TGGCTATGCGCAGAGATCAT+CGG | 0.547396 | 8_1:-90379169 | Msa1225090:CDS |
| GCATATTTATAATCTTCAGC+TGG | 0.551671 | 8_1:+90378131 | None:intergenic |
| GTTATGTATGAGGGATTTCG+AGG | 0.556559 | 8_1:-90379124 | Msa1225090:CDS |
| GCAAGATGACAAGTGGTTTG+TGG | 0.557509 | 8_1:-90378861 | Msa1225090:CDS |
| ATTGCCCTTAACTTTGGCAG+AGG | 0.559077 | 8_1:+90378245 | None:intergenic |
| TGCTGAATCTACCTGCGAGA+GGG | 0.563461 | 8_1:-90377886 | Msa1225090:CDS |
| GCAGAGATCATCGGTGGTAA+GGG | 0.566486 | 8_1:-90379160 | Msa1225090:CDS |
| TTGGACTCCAGGTGATATTG+TGG | 0.573973 | 8_1:-90379020 | Msa1225090:CDS |
| AATATGCTTCTGTAAACAGT+AGG | 0.574800 | 8_1:-90378115 | Msa1225090:CDS |
| AATGAGTGACCTTATTCCGA+TGG | 0.576029 | 8_1:+90380070 | None:intergenic |
| TCCACAAGTTCAAGTGGCGG+CGG | 0.577331 | 8_1:+90379046 | None:intergenic |
| GAAAACATCGTCTTCTCCAT+CGG | 0.577520 | 8_1:-90380086 | Msa1225090:CDS |
| AACAGAGCATGTAACACTAT+CGG | 0.581635 | 8_1:+90378001 | None:intergenic |
| CTTGTGGAGAATTGGACTCC+AGG | 0.586001 | 8_1:-90379031 | Msa1225090:CDS |
| ATTTCGAGGTCCTATGGATG+AGG | 0.586670 | 8_1:-90379110 | Msa1225090:CDS |
| CAAGTGGTTTGTGGTGGGAA+AGG | 0.592216 | 8_1:-90378852 | Msa1225090:intron |
| TAGTATCGAAGAAATCGATA+AGG | 0.594548 | 8_1:-90379075 | Msa1225090:CDS |
| CAATTTATAGGAATTCCCAC+TGG | 0.599832 | 8_1:+90377962 | None:intergenic |
| TGCCTCAATTGTACAACGAT+AGG | 0.611837 | 8_1:+90377788 | None:intergenic |
| AGGACGTCATTCACAAGTTG+AGG | 0.614174 | 8_1:-90378279 | Msa1225090:CDS |
| CAATTCTCCACAAGTTCAAG+TGG | 0.615692 | 8_1:+90379040 | None:intergenic |
| TCCACAATTTCCTCATCCAT+AGG | 0.616278 | 8_1:+90379100 | None:intergenic |
| TTGATATGTTAAGCGAAAGA+CGG | 0.617141 | 8_1:+90377712 | None:intergenic |
| TATACTTCCACAATATCACC+TGG | 0.621237 | 8_1:+90379013 | None:intergenic |
| CCACACGAAAAGAATTGGCA+AGG | 0.628263 | 8_1:-90377836 | Msa1225090:CDS |
| GATAGTGTTACATGCTCTGT+TGG | 0.630628 | 8_1:-90377999 | Msa1225090:CDS |
| ATGCTGAATCTACCTGCGAG+AGG | 0.634524 | 8_1:-90377887 | Msa1225090:CDS |
| AGATGACAAGTGGTTTGTGG+TGG | 0.636421 | 8_1:-90378858 | Msa1225090:CDS |
| TTCTCCACAAGTTCAAGTGG+CGG | 0.638349 | 8_1:+90379043 | None:intergenic |
| GCTGAATCTACCTGCGAGAG+GGG | 0.638768 | 8_1:-90377885 | Msa1225090:CDS |
| AGGAAACAAATTGCTGCTGT+GGG | 0.647045 | 8_1:-90378059 | Msa1225090:CDS |
| GATGACAAGTGGTTTGTGGT+GGG | 0.652201 | 8_1:-90378857 | Msa1225090:CDS |
| CTGAATCTACCTGCGAGAGG+GGG | 0.652340 | 8_1:-90377884 | Msa1225090:CDS |
| TTTCTTCTTACAGTTGAACG+AGG | 0.653790 | 8_1:+90377554 | None:intergenic |
| CCTCATACATAACAGTGTAA+CGG | 0.654519 | 8_1:+90379134 | None:intergenic |
| AGTCGTGGCAAGATGACAAG+TGG | 0.661513 | 8_1:-90378868 | Msa1225090:CDS |
| GGAAGTGCTAAGCAAAGCTG+AGG | 0.663188 | 8_1:-90379206 | Msa1225090:CDS |
| TTGATATGGACACAGAGAGG+AGG | 0.663740 | 8_1:-90378079 | Msa1225090:CDS |
| ATATGTTAAGCGAAAGACGG+AGG | 0.671653 | 8_1:+90377715 | None:intergenic |
| ATATTCGGGTCAGACAGTCG+TGG | 0.673799 | 8_1:-90378883 | Msa1225090:CDS |
| GGTAGCTGTAGTATCACCAG+TGG | 0.674097 | 8_1:-90377978 | Msa1225090:CDS |
| ATTCAAGAAAGGGACTAAGG+TGG | 0.678749 | 8_1:-90379227 | Msa1225090:CDS |
| CTATGCGCAGAGATCATCGG+TGG | 0.699678 | 8_1:-90379166 | Msa1225090:CDS |
| GTAGCTGTAGTATCACCAGT+GGG | 0.708719 | 8_1:-90377977 | Msa1225090:CDS |
| TTGTTGATATGGACACAGAG+AGG | 0.716324 | 8_1:-90378082 | Msa1225090:CDS |
| CATACATAACAGTGTAACGG+TGG | 0.739011 | 8_1:+90379137 | None:intergenic |
| AGTATGGAACTCTAACCCTG+AGG | 0.758536 | 8_1:+90377590 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTAGTATTTATG+AGG | - | chr8_1:90377807-90377826 | Msa1225090:CDS | 10.0% |
| !! | AGAATTTAGAAATTTAAAAA+AGG | + | chr8_1:90378288-90378307 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTTATTATATG+TGG | - | chr8_1:90378838-90378857 | Msa1225090:intron | 10.0% |
| !!! | TCATTTTTCATTGTTTAATA+AGG | + | chr8_1:90377841-90377860 | None:intergenic | 15.0% |
| !!! | AATGTTTTTCTATTTATTGA+TGG | - | chr8_1:90378196-90378215 | Msa1225090:CDS | 15.0% |
| !!! | GCTAATTGAAATTTTAATAA+AGG | - | chr8_1:90379003-90379022 | Msa1225090:CDS | 15.0% |
| !!! | TTAATAAAGGAATTTTTCTT+AGG | - | chr8_1:90379016-90379035 | Msa1225090:CDS | 15.0% |
| !! | AAATCATAAAACATAAATGA+AGG | + | chr8_1:90380129-90380148 | None:intergenic | 15.0% |
| !! | ATGATGATAATTGTTAAAAC+AGG | - | chr8_1:90377753-90377772 | Msa1225090:CDS | 20.0% |
| !!! | AGTTATTTTCCAAAGTTTAA+AGG | + | chr8_1:90377878-90377897 | None:intergenic | 20.0% |
| !!! | TTTTGAACATAAGTTTTGTT+TGG | - | chr8_1:90378027-90378046 | Msa1225090:CDS | 20.0% |
| !!! | TTTGAACATAAGTTTTGTTT+GGG | - | chr8_1:90378028-90378047 | Msa1225090:CDS | 20.0% |
| !!! | TTTTTTTTCTTTCCTTTTTC+TGG | - | chr8_1:90378126-90378145 | Msa1225090:CDS | 20.0% |
| !! | AAGTTAGCAAATTTGATATT+CGG | - | chr8_1:90378743-90378762 | Msa1225090:intron | 20.0% |
| !! | AATAACAAAATGACTCATAT+GGG | + | chr8_1:90378827-90378846 | None:intergenic | 20.0% |
| !! | AAATAACAAAATGACTCATA+TGG | + | chr8_1:90378828-90378847 | None:intergenic | 20.0% |
| !! | AATATGAACTGAAGAAAATT+TGG | + | chr8_1:90379085-90379104 | None:intergenic | 20.0% |
| !!! | AAAAGAAAGAACTTGATAAT+CGG | - | chr8_1:90379304-90379323 | Msa1225090:intron | 20.0% |
| !!! | TTCAATGTTTTAAAAGAAAC+AGG | + | chr8_1:90379339-90379358 | None:intergenic | 20.0% |
| ! | AGGTTCTTAATTCTATTATC+AGG | - | chr8_1:90377773-90377792 | Msa1225090:CDS | 25.0% |
| ! | AAGAAAGAACCTTTAAACTT+TGG | - | chr8_1:90377866-90377885 | Msa1225090:CDS | 25.0% |
| ! | ATAACTGAATTAAAGCAAAG+TGG | - | chr8_1:90377892-90377911 | Msa1225090:CDS | 25.0% |
| ! | TTTAATCACATTTCACTGAT+TGG | - | chr8_1:90377948-90377967 | Msa1225090:CDS | 25.0% |
| !! | GCAATTCAAAGTAAAAGTTT+TGG | - | chr8_1:90378170-90378189 | Msa1225090:CDS | 25.0% |
| !! | TATATGTTGATTGTGATTAG+AGG | - | chr8_1:90378244-90378263 | Msa1225090:CDS | 25.0% |
| ! | AAGTATATCAGAATTTCTCT+TGG | - | chr8_1:90378644-90378663 | Msa1225090:intron | 25.0% |
| ! | AGTTAGCAAATTTGATATTC+GGG | - | chr8_1:90378744-90378763 | Msa1225090:intron | 25.0% |
| ! | AAACAGAATACATTGAATCA+AGG | + | chr8_1:90378944-90378963 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTAAATGTTTC+TGG | - | chr8_1:90379129-90379148 | Msa1225090:CDS | 25.0% |
| !! | TTATCAAGTTCTTTCTTTTC+AGG | + | chr8_1:90379303-90379322 | None:intergenic | 25.0% |
| !! | AAAGAAAGAACTTGATAATC+GGG | - | chr8_1:90379305-90379324 | Msa1225090:intron | 25.0% |
| !!! | TCTTTTAAAACATTGAAACG+AGG | - | chr8_1:90379342-90379361 | Msa1225090:intron | 25.0% |
| !! | ACATTTTGTACATGTTTAAG+TGG | + | chr8_1:90379471-90379490 | None:intergenic | 25.0% |
| ! | TACAGGAAATTGCAATTTAT+AGG | + | chr8_1:90379694-90379713 | None:intergenic | 25.0% |
| TGAATTAAAGCAAAGTGGAT+CGG | - | chr8_1:90377897-90377916 | Msa1225090:CDS | 30.0% | |
| ! | TAGTATCGAAGAAATCGATA+AGG | - | chr8_1:90378566-90378585 | Msa1225090:intron | 30.0% |
| !!! | GTTGGTTTTTATCAAGCTTT+TGG | - | chr8_1:90378913-90378932 | Msa1225090:CDS | 30.0% |
| !! | GGAATTTTTCTTAGGTTGTT+CGG | - | chr8_1:90379024-90379043 | Msa1225090:CDS | 30.0% |
| TTTATGCTTCTACTATCTTC+AGG | - | chr8_1:90379185-90379204 | Msa1225090:CDS | 30.0% | |
| TTATGCTTCTACTATCTTCA+GGG | - | chr8_1:90379186-90379205 | Msa1225090:CDS | 30.0% | |
| !!! | TGTTTTAAAAGAAACAGGAC+AGG | + | chr8_1:90379334-90379353 | None:intergenic | 30.0% |
| GCATATTTATAATCTTCAGC+TGG | + | chr8_1:90379513-90379532 | None:intergenic | 30.0% | |
| AATATGCTTCTGTAAACAGT+AGG | - | chr8_1:90379526-90379545 | Msa1225090:intron | 30.0% | |
| AATTGGCAAGGAAAATTCAT+AGG | - | chr8_1:90379817-90379836 | Msa1225090:intron | 30.0% | |
| TTGATATGTTAAGCGAAAGA+CGG | + | chr8_1:90379932-90379951 | None:intergenic | 30.0% | |
| AAAAATTCCTGTCATCTGAA+AGG | + | chr8_1:90380008-90380027 | None:intergenic | 30.0% | |
| ! | AACTTAATACCTTTTCCTCA+GGG | - | chr8_1:90380036-90380055 | Msa1225090:intron | 30.0% |
| TTCACTCTCTTCTTCTTATG+CGG | + | chr8_1:90377516-90377535 | None:intergenic | 35.0% | |
| ! | TGACTTGTAAGACCAGAAAA+AGG | + | chr8_1:90378141-90378160 | None:intergenic | 35.0% |
| CCTCATACATAACAGTGTAA+CGG | + | chr8_1:90378510-90378529 | None:intergenic | 35.0% | |
| CGTTACACTGTTATGTATGA+GGG | - | chr8_1:90378508-90378527 | Msa1225090:intron | 35.0% | |
| TATACTTCCACAATATCACC+TGG | + | chr8_1:90378631-90378650 | None:intergenic | 35.0% | |
| TCAGAATTTCTCTTGGAAGA+TGG | - | chr8_1:90378651-90378670 | Msa1225090:intron | 35.0% | |
| TTGCAGATCATATGTTGAGT+TGG | - | chr8_1:90378895-90378914 | Msa1225090:CDS | 35.0% | |
| AGATGTAACAAAGCAAGAGT+TGG | - | chr8_1:90379432-90379451 | Msa1225090:intron | 35.0% | |
| TGTACATGTTTAAGTGGTGT+GGG | + | chr8_1:90379465-90379484 | None:intergenic | 35.0% | |
| TTGTACATGTTTAAGTGGTG+TGG | + | chr8_1:90379466-90379485 | None:intergenic | 35.0% | |
| TCTGTAAACAGTAGGAAGAA+TGG | - | chr8_1:90379534-90379553 | Msa1225090:intron | 35.0% | |
| CTGTAAACAGTAGGAAGAAT+GGG | - | chr8_1:90379535-90379554 | Msa1225090:intron | 35.0% | |
| GAAGAATGGGATTGTTGATA+TGG | - | chr8_1:90379548-90379567 | Msa1225090:intron | 35.0% | |
| AACAGAGCATGTAACACTAT+CGG | + | chr8_1:90379643-90379662 | None:intergenic | 35.0% | |
| CAATTTATAGGAATTCCCAC+TGG | + | chr8_1:90379682-90379701 | None:intergenic | 35.0% | |
| GAACTGTCTACATCTTCAAA+TGG | + | chr8_1:90379726-90379745 | None:intergenic | 35.0% | |
| TAGTATTCCTTTCAGATGAC+AGG | - | chr8_1:90379998-90380017 | Msa1225090:intron | 35.0% | |
| ! | CAACTTAATACCTTTTCCTC+AGG | - | chr8_1:90380035-90380054 | Msa1225090:intron | 35.0% |
| AGGCTAGCAAAAATCTAGTA+TGG | + | chr8_1:90380070-90380089 | None:intergenic | 35.0% | |
| TTTCTTCTTACAGTTGAACG+AGG | + | chr8_1:90380090-90380109 | None:intergenic | 35.0% | |
| GAAAACATCGTCTTCTCCAT+CGG | - | chr8_1:90377555-90377574 | Msa1225090:three_prime_UTR | 40.0% | |
| AATGAGTGACCTTATTCCGA+TGG | + | chr8_1:90377574-90377593 | None:intergenic | 40.0% | |
| ACGATCATGCGATTCAAGAA+AGG | - | chr8_1:90378403-90378422 | Msa1225090:CDS | 40.0% | |
| CGATCATGCGATTCAAGAAA+GGG | - | chr8_1:90378404-90378423 | Msa1225090:CDS | 40.0% | |
| ATTCAAGAAAGGGACTAAGG+TGG | - | chr8_1:90378414-90378433 | Msa1225090:CDS | 40.0% | |
| CATACATAACAGTGTAACGG+TGG | + | chr8_1:90378507-90378526 | None:intergenic | 40.0% | |
| CCGTTACACTGTTATGTATG+AGG | - | chr8_1:90378507-90378526 | Msa1225090:intron | 40.0% | |
| GTTATGTATGAGGGATTTCG+AGG | - | chr8_1:90378517-90378536 | Msa1225090:intron | 40.0% | |
| TCCTATGGATGAGGAAATTG+TGG | - | chr8_1:90378540-90378559 | Msa1225090:intron | 40.0% | |
| TCCACAATTTCCTCATCCAT+AGG | + | chr8_1:90378544-90378563 | None:intergenic | 40.0% | |
| CAATTCTCCACAAGTTCAAG+TGG | + | chr8_1:90378604-90378623 | None:intergenic | 40.0% | |
| CACTTGAACTTGTGGAGAAT+TGG | - | chr8_1:90378602-90378621 | Msa1225090:intron | 40.0% | |
| TTTCTCTTGGAAGATGGCTA+CGG | - | chr8_1:90378657-90378676 | Msa1225090:intron | 40.0% | |
| !!! | GCTACGGTTTTGAAGGTTTT+GGG | - | chr8_1:90378673-90378692 | Msa1225090:intron | 40.0% |
| !!! | CTACGGTTTTGAAGGTTTTG+GGG | - | chr8_1:90378674-90378693 | Msa1225090:intron | 40.0% |
| ! | GGAAAAAGTGCATTGCTGTT+AGG | - | chr8_1:90378695-90378714 | Msa1225090:intron | 40.0% |
| ! | TTTGTACTGGCAAGGACAAT+TGG | + | chr8_1:90378870-90378889 | None:intergenic | 40.0% |
| ATCTGCAACCACATTTGTAC+TGG | + | chr8_1:90378883-90378902 | None:intergenic | 40.0% | |
| TGAACCTCTGCCAAAGTTAA+GGG | - | chr8_1:90379392-90379411 | Msa1225090:intron | 40.0% | |
| TCCTCAATTGCCCTTAACTT+TGG | + | chr8_1:90379405-90379424 | None:intergenic | 40.0% | |
| TTAAGGGCAATTGAGGATGA+TGG | - | chr8_1:90379408-90379427 | Msa1225090:intron | 40.0% | |
| TTGTTGATATGGACACAGAG+AGG | - | chr8_1:90379559-90379578 | Msa1225090:intron | 40.0% | |
| AGGAAACAAATTGCTGCTGT+GGG | - | chr8_1:90379582-90379601 | Msa1225090:intron | 40.0% | |
| GATAGTGTTACATGCTCTGT+TGG | - | chr8_1:90379642-90379661 | Msa1225090:intron | 40.0% | |
| TTGCAATTTCCTGTATCTGC+AGG | - | chr8_1:90379699-90379718 | Msa1225090:intron | 40.0% | |
| ! | CTTGCCAATTCTTTTCGTGT+GGG | + | chr8_1:90379807-90379826 | None:intergenic | 40.0% |
| TGCCTATCGTTGTACAATTG+AGG | - | chr8_1:90379851-90379870 | Msa1225090:intron | 40.0% | |
| TGCCTCAATTGTACAACGAT+AGG | + | chr8_1:90379856-90379875 | None:intergenic | 40.0% | |
| GCTTCTTGTTCCCAACTTAA+AGG | + | chr8_1:90379894-90379913 | None:intergenic | 40.0% | |
| ATATGTTAAGCGAAAGACGG+AGG | + | chr8_1:90379929-90379948 | None:intergenic | 40.0% | |
| TCGTCTTCTCCATCGGAATA+AGG | - | chr8_1:90377562-90377581 | Msa1225090:three_prime_UTR | 45.0% | |
| GCGATTCAAGAAAGGGACTA+AGG | - | chr8_1:90378411-90378430 | Msa1225090:CDS | 45.0% | |
| ATTTCGAGGTCCTATGGATG+AGG | - | chr8_1:90378531-90378550 | Msa1225090:intron | 45.0% | |
| TTCTCCACAAGTTCAAGTGG+CGG | + | chr8_1:90378601-90378620 | None:intergenic | 45.0% | |
| TTGGACTCCAGGTGATATTG+TGG | - | chr8_1:90378621-90378640 | Msa1225090:intron | 45.0% | |
| !! | GAAGATGGCTACGGTTTTGA+AGG | - | chr8_1:90378666-90378685 | Msa1225090:intron | 45.0% |
| !!! | GGCTACGGTTTTGAAGGTTT+TGG | - | chr8_1:90378672-90378691 | Msa1225090:intron | 45.0% |
| ! | TGCATTGCTGTTAGGCTACT+TGG | - | chr8_1:90378703-90378722 | Msa1225090:intron | 45.0% |
| TAGGCTACTTGGATCTTCTG+TGG | - | chr8_1:90378714-90378733 | Msa1225090:intron | 45.0% | |
| GCAAGATGACAAGTGGTTTG+TGG | - | chr8_1:90378780-90378799 | Msa1225090:intron | 45.0% | |
| ! | AGATGACAAGTGGTTTGTGG+TGG | - | chr8_1:90378783-90378802 | Msa1225090:intron | 45.0% |
| ! | GATGACAAGTGGTTTGTGGT+GGG | - | chr8_1:90378784-90378803 | Msa1225090:intron | 45.0% |
| TGTCCTTGCCAGTACAAATG+TGG | - | chr8_1:90378872-90378891 | Msa1225090:CDS | 45.0% | |
| ! | CAACCACATTTGTACTGGCA+AGG | + | chr8_1:90378878-90378897 | None:intergenic | 45.0% |
| GGTTCTGCTAGCTGTGATAA+TGG | - | chr8_1:90379207-90379226 | Msa1225090:CDS | 45.0% | |
| AGGACGTCATTCACAAGTTG+AGG | - | chr8_1:90379362-90379381 | Msa1225090:intron | 45.0% | |
| CTGAACCTCTGCCAAAGTTA+AGG | - | chr8_1:90379391-90379410 | Msa1225090:intron | 45.0% | |
| ATTGCCCTTAACTTTGGCAG+AGG | + | chr8_1:90379399-90379418 | None:intergenic | 45.0% | |
| GCCAAAGTTAAGGGCAATTG+AGG | - | chr8_1:90379401-90379420 | Msa1225090:intron | 45.0% | |
| CATGTTTAAGTGGTGTGGGT+GGG | + | chr8_1:90379461-90379480 | None:intergenic | 45.0% | |
| ACATGTTTAAGTGGTGTGGG+TGG | + | chr8_1:90379462-90379481 | None:intergenic | 45.0% | |
| TTGATATGGACACAGAGAGG+AGG | - | chr8_1:90379562-90379581 | Msa1225090:intron | 45.0% | |
| GAGGAAACAAATTGCTGCTG+TGG | - | chr8_1:90379581-90379600 | Msa1225090:intron | 45.0% | |
| GTAGCTGTAGTATCACCAGT+GGG | - | chr8_1:90379664-90379683 | Msa1225090:intron | 45.0% | |
| TCAAATGGACCTGCAGATAC+AGG | + | chr8_1:90379711-90379730 | None:intergenic | 45.0% | |
| ! | CAATTCTTTTCGTGTGGGAC+GGG | + | chr8_1:90379802-90379821 | None:intergenic | 45.0% |
| ! | CCAATTCTTTTCGTGTGGGA+CGG | + | chr8_1:90379803-90379822 | None:intergenic | 45.0% |
| ! | CCTTGCCAATTCTTTTCGTG+TGG | + | chr8_1:90379808-90379827 | None:intergenic | 45.0% |
| CCACACGAAAAGAATTGGCA+AGG | - | chr8_1:90379805-90379824 | Msa1225090:intron | 45.0% | |
| !! | ATTGAGGCATTGTTTGCGTC+AGG | - | chr8_1:90379867-90379886 | Msa1225090:intron | 45.0% |
| TTGCGTCAGGACCTTTAAGT+TGG | - | chr8_1:90379880-90379899 | Msa1225090:intron | 45.0% | |
| ! | TGCGTCAGGACCTTTAAGTT+GGG | - | chr8_1:90379881-90379900 | Msa1225090:intron | 45.0% |
| GAACTCTAACCCTGAGGAAA+AGG | + | chr8_1:90380048-90380067 | None:intergenic | 45.0% | |
| AGTATGGAACTCTAACCCTG+AGG | + | chr8_1:90380054-90380073 | None:intergenic | 45.0% | |
| !! | GGAAGTGCTAAGCAAAGCTG+AGG | - | chr8_1:90378435-90378454 | Msa1225090:CDS | 50.0% |
| TGGCTATGCGCAGAGATCAT+CGG | - | chr8_1:90378472-90378491 | Msa1225090:intron | 50.0% | |
| GCAGAGATCATCGGTGGTAA+GGG | - | chr8_1:90378481-90378500 | Msa1225090:intron | 50.0% | |
| TGAGGGATTTCGAGGTCCTA+TGG | - | chr8_1:90378525-90378544 | Msa1225090:intron | 50.0% | |
| CTTGTGGAGAATTGGACTCC+AGG | - | chr8_1:90378610-90378629 | Msa1225090:intron | 50.0% | |
| ATATTCGGGTCAGACAGTCG+TGG | - | chr8_1:90378758-90378777 | Msa1225090:intron | 50.0% | |
| AGTCGTGGCAAGATGACAAG+TGG | - | chr8_1:90378773-90378792 | Msa1225090:intron | 50.0% | |
| ! | CAAGTGGTTTGTGGTGGGAA+AGG | - | chr8_1:90378789-90378808 | Msa1225090:intron | 50.0% |
| TCTTCAGCTGGCACATGTCT+TGG | + | chr8_1:90379501-90379520 | None:intergenic | 50.0% | |
| ! | GCTGCTGTGGGTTGTTCATT+TGG | - | chr8_1:90379594-90379613 | Msa1225090:intron | 50.0% |
| GGTAGCTGTAGTATCACCAG+TGG | - | chr8_1:90379663-90379682 | Msa1225090:intron | 50.0% | |
| ATGCTGAATCTACCTGCGAG+AGG | - | chr8_1:90379754-90379773 | Msa1225090:intron | 50.0% | |
| TGCTGAATCTACCTGCGAGA+GGG | - | chr8_1:90379755-90379774 | Msa1225090:intron | 50.0% | |
| CCGTCCCACACGAAAAGAAT+TGG | - | chr8_1:90379800-90379819 | Msa1225090:intron | 50.0% | |
| ! | AGCAAAGCTGAGGTGCCTTC+TGG | - | chr8_1:90378445-90378464 | Msa1225090:intron | 55.0% |
| GATGATCTCTGCGCATAGCC+AGG | + | chr8_1:90378473-90378492 | None:intergenic | 55.0% | |
| CTATGCGCAGAGATCATCGG+TGG | - | chr8_1:90378475-90378494 | Msa1225090:intron | 55.0% | |
| CGCAGAGATCATCGGTGGTA+AGG | - | chr8_1:90378480-90378499 | Msa1225090:intron | 55.0% | |
| TCCACAAGTTCAAGTGGCGG+CGG | + | chr8_1:90378598-90378617 | None:intergenic | 55.0% | |
| GCTGAATCTACCTGCGAGAG+GGG | - | chr8_1:90379756-90379775 | Msa1225090:intron | 55.0% | |
| CTGAATCTACCTGCGAGAGG+GGG | - | chr8_1:90379757-90379776 | Msa1225090:intron | 55.0% | |
| AGTTCAAGTGGCGGCGGACA+CGG | + | chr8_1:90378592-90378611 | None:intergenic | 60.0% | |
| TCCGCCGCCACTTGAACTTG+TGG | - | chr8_1:90378594-90378613 | Msa1225090:intron | 60.0% | |
| ! | TACCTGCGAGAGGGGGTACA+TGG | - | chr8_1:90379764-90379783 | Msa1225090:intron | 60.0% |
| TTCCATGTACCCCCTCTCGC+AGG | + | chr8_1:90379769-90379788 | None:intergenic | 60.0% | |
| !! | CTGAGGTGCCTTCTGGCTCC+TGG | - | chr8_1:90378452-90378471 | Msa1225090:intron | 65.0% |
| GCGCATAGCCAGGAGCCAGA+AGG | + | chr8_1:90378463-90378482 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 90377489 | 90380174 | 90377489 | ID=Msa1225090;Name=Msa1225090 |
| chr8_1 | mRNA | 90377489 | 90380174 | 90377489 | ID=Msa1225090-mRNA-1;Parent=Msa1225090;Name=Msa1225090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|1|1|0.5|0.33|3|158|440 |
| chr8_1 | exon | 90377489 | 90378456 | 90377489 | ID=Msa1225090-mRNA-1:exon:32857;Parent=Msa1225090-mRNA-1 |
| chr8_1 | exon | 90378853 | 90379270 | 90378853 | ID=Msa1225090-mRNA-1:exon:32856;Parent=Msa1225090-mRNA-1 |
| chr8_1 | exon | 90380080 | 90380174 | 90380080 | ID=Msa1225090-mRNA-1:exon:32855;Parent=Msa1225090-mRNA-1 |
| chr8_1 | CDS | 90380080 | 90380174 | 90380080 | ID=Msa1225090-mRNA-1:cds;Parent=Msa1225090-mRNA-1 |
| chr8_1 | CDS | 90378853 | 90379270 | 90378853 | ID=Msa1225090-mRNA-1:cds;Parent=Msa1225090-mRNA-1 |
| chr8_1 | CDS | 90377647 | 90378456 | 90377647 | ID=Msa1225090-mRNA-1:cds;Parent=Msa1225090-mRNA-1 |
| chr8_1 | three_prime_UTR | 90377489 | 90377646 | 90377489 | ID=Msa1225090-mRNA-1:three_prime_utr;Parent=Msa1225090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
