Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405240 | XP_013458081.1 | 95.037 | 403 | 20 | 0 | 38 | 440 | 1 | 403 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405240 | A0A072UR05 | 95.037 | 403 | 20 | 0 | 38 | 440 | 1 | 403 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1225090 | Msa1405240 | 0.967587 | 1.752375e-127 | -8.615850e-47 |
| Msa1262010 | Msa1405240 | 0.801144 | 1.034239e-48 | -8.615850e-47 |
| Msa1329860 | Msa1405240 | 0.870247 | 1.685675e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405240 | MtrunA17_Chr4g0063231 | 83.478 | 345 | 18 | 1 | 38 | 382 | 1 | 306 | 0.0 | 579 |
| Msa1405240 | MtrunA17_Chr3g0138081 | 31.595 | 326 | 196 | 8 | 38 | 357 | 1 | 305 | 3.43e-32 | 125 |
| Msa1405240 | MtrunA17_Chr1g0192931 | 29.710 | 138 | 92 | 3 | 38 | 172 | 54 | 189 | 4.40e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405240 | AT4G32440.1 | 39.152 | 401 | 208 | 9 | 38 | 433 | 1 | 370 | 4.27e-75 | 239 |
| Msa1405240 | AT4G32440.2 | 38.579 | 394 | 206 | 9 | 38 | 426 | 1 | 363 | 6.68e-71 | 229 |
| Msa1405240 | AT5G20030.2 | 37.685 | 406 | 170 | 12 | 38 | 440 | 1 | 326 | 6.75e-65 | 211 |
| Msa1405240 | AT5G20030.1 | 37.685 | 406 | 170 | 12 | 38 | 440 | 1 | 326 | 6.75e-65 | 211 |
| Msa1405240 | AT4G32440.3 | 33.987 | 306 | 172 | 7 | 38 | 336 | 1 | 283 | 2.47e-41 | 149 |
| Msa1405240 | AT2G25590.1 | 47.101 | 138 | 71 | 2 | 38 | 174 | 1 | 137 | 1.51e-34 | 132 |
Find 104 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTGTTCCCAACTTAA+AGG | 0.192880 | tig0023115:-46870 | None:intergenic |
| AAGTTAGCAAATTTGATATT+CGG | 0.271483 | tig0023115:+45722 | Msa1405240:CDS |
| TGCATTGCTGTTAGGCTACT+TGG | 0.324453 | tig0023115:+45682 | Msa1405240:CDS |
| TACAGGAAATTGCAATTTAT+AGG | 0.333504 | tig0023115:-46670 | None:intergenic |
| GCTGCTGTGGGTTGTTCATT+TGG | 0.339068 | tig0023115:+46573 | Msa1405240:CDS |
| CACTTGAACTTGTGGAGAAT+TGG | 0.339132 | tig0023115:+45581 | Msa1405240:CDS |
| AGCAAAGCTGAGGTGCCTTC+TGG | 0.348934 | tig0023115:+45424 | Msa1405240:CDS |
| GAAGAATGGGATTGTTGATA+TGG | 0.349536 | tig0023115:+46527 | Msa1405240:CDS |
| AGTTAGCAAATTTGATATTC+GGG | 0.355743 | tig0023115:+45723 | Msa1405240:CDS |
| AAAAGAAAGAACTTGATAAT+CGG | 0.363802 | tig0023115:+46283 | Msa1405240:CDS |
| CTGAACCTCTGCCAAAGTTA+AGG | 0.366412 | tig0023115:+46370 | Msa1405240:CDS |
| AATTGGCAAGGAAAATTCAT+AGG | 0.383309 | tig0023115:+46796 | Msa1405240:CDS |
| TCGTCTTCTCCATCGGAATA+AGG | 0.390921 | tig0023115:+44541 | Msa1405240:CDS |
| GGTTCTGCTAGCTGTGATAA+TGG | 0.406897 | tig0023115:+46186 | Msa1405240:CDS |
| CGCAGAGATCATCGGTGGTA+AGG | 0.424268 | tig0023115:+45459 | Msa1405240:CDS |
| CCGTTACACTGTTATGTATG+AGG | 0.427399 | tig0023115:+45486 | Msa1405240:CDS |
| CTGAGGTGCCTTCTGGCTCC+TGG | 0.431731 | tig0023115:+45431 | Msa1405240:CDS |
| TGAACCTCTGCCAAAGTTAA+GGG | 0.432025 | tig0023115:+46371 | Msa1405240:CDS |
| CCGTCCCACACGAAAAGAAT+TGG | 0.434168 | tig0023115:+46779 | Msa1405240:CDS |
| TCCTCAATTGCCCTTAACTT+TGG | 0.435600 | tig0023115:-46381 | None:intergenic |
| TCAAATGGACCTGCAGATAC+AGG | 0.435709 | tig0023115:-46687 | None:intergenic |
| TCTTCAGCTGGCACATGTCT+TGG | 0.438373 | tig0023115:-46477 | None:intergenic |
| ATTGAGGCATTGTTTGCGTC+AGG | 0.438499 | tig0023115:+46846 | Msa1405240:CDS |
| GAACTCTAACCCTGAGGAAA+AGG | 0.446066 | tig0023115:-47024 | None:intergenic |
| CTGTAAACAGTAGGAAGAAT+GGG | 0.451080 | tig0023115:+46514 | Msa1405240:CDS |
| AAAGAAAGAACTTGATAATC+GGG | 0.459096 | tig0023115:+46284 | Msa1405240:CDS |
| TAGTATTCCTTTCAGATGAC+AGG | 0.465640 | tig0023115:+46977 | Msa1405240:exon |
| TTGCAATTTCCTGTATCTGC+AGG | 0.466258 | tig0023115:+46678 | Msa1405240:CDS |
| TGCGTCAGGACCTTTAAGTT+GGG | 0.468318 | tig0023115:+46860 | Msa1405240:CDS |
| TTGCGTCAGGACCTTTAAGT+TGG | 0.469617 | tig0023115:+46859 | Msa1405240:CDS |
| AAATCATAAAACATAAATGA+AGG | 0.470683 | tig0023115:-47105 | None:intergenic |
| TTGTACATGTTTAAGTGGTG+TGG | 0.472803 | tig0023115:-46442 | None:intergenic |
| TGAGGGATTTCGAGGTCCTA+TGG | 0.472833 | tig0023115:+45504 | Msa1405240:CDS |
| TCTGTAAACAGTAGGAAGAA+TGG | 0.480789 | tig0023115:+46513 | Msa1405240:CDS |
| TCAGAATTTCTCTTGGAAGA+TGG | 0.485444 | tig0023115:+45630 | Msa1405240:CDS |
| GATGATCTCTGCGCATAGCC+AGG | 0.490942 | tig0023115:-45449 | None:intergenic |
| ACGATCATGCGATTCAAGAA+AGG | 0.491296 | tig0023115:+45382 | Msa1405240:CDS |
| TGTACATGTTTAAGTGGTGT+GGG | 0.498268 | tig0023115:-46441 | None:intergenic |
| GCCAAAGTTAAGGGCAATTG+AGG | 0.503706 | tig0023115:+46380 | Msa1405240:CDS |
| CGATCATGCGATTCAAGAAA+GGG | 0.505344 | tig0023115:+45383 | Msa1405240:CDS |
| GAACTGTCTACATCTTCAAA+TGG | 0.507082 | tig0023115:-46702 | None:intergenic |
| CATGTTTAAGTGGTGTGGGT+GGG | 0.509663 | tig0023115:-46437 | None:intergenic |
| TTCACTCTCTTCTTCTTATG+CGG | 0.511891 | tig0023115:-44492 | None:intergenic |
| TTAAGGGCAATTGAGGATGA+TGG | 0.517889 | tig0023115:+46387 | Msa1405240:CDS |
| AGATGTAACAAAGCAAGAGT+TGG | 0.522342 | tig0023115:+46411 | Msa1405240:CDS |
| TCCTATGGATGAGGAAATTG+TGG | 0.522986 | tig0023115:+45519 | Msa1405240:CDS |
| AGTTCAAGTGGCGGCGGACA+CGG | 0.523763 | tig0023115:-45568 | None:intergenic |
| GAGGAAACAAATTGCTGCTG+TGG | 0.532654 | tig0023115:+46560 | Msa1405240:CDS |
| GCGCATAGCCAGGAGCCAGA+AGG | 0.534346 | tig0023115:-45439 | None:intergenic |
| TTTCTCTTGGAAGATGGCTA+CGG | 0.534357 | tig0023115:+45636 | Msa1405240:CDS |
| AAGTATATCAGAATTTCTCT+TGG | 0.536145 | tig0023115:+45623 | Msa1405240:CDS |
| GCGATTCAAGAAAGGGACTA+AGG | 0.538395 | tig0023115:+45390 | Msa1405240:CDS |
| TAGGCTACTTGGATCTTCTG+TGG | 0.539977 | tig0023115:+45693 | Msa1405240:CDS |
| TCCGCCGCCACTTGAACTTG+TGG | 0.540574 | tig0023115:+45573 | Msa1405240:CDS |
| CGTTACACTGTTATGTATGA+GGG | 0.542469 | tig0023115:+45487 | Msa1405240:CDS |
| TGCCTATCGTTGTACAATTG+AGG | 0.543589 | tig0023115:+46830 | Msa1405240:CDS |
| ACATGTTTAAGTGGTGTGGG+TGG | 0.546027 | tig0023115:-46438 | None:intergenic |
| TGGCTATGCGCAGAGATCAT+CGG | 0.547396 | tig0023115:+45451 | Msa1405240:CDS |
| GCATATTTATAATCTTCAGC+TGG | 0.551671 | tig0023115:-46489 | None:intergenic |
| GTTATGTATGAGGGATTTCG+AGG | 0.556559 | tig0023115:+45496 | Msa1405240:CDS |
| GCAAGATGACAAGTGGTTTG+TGG | 0.557509 | tig0023115:+45759 | Msa1405240:CDS |
| ATTGCCCTTAACTTTGGCAG+AGG | 0.559077 | tig0023115:-46375 | None:intergenic |
| TGCTGAATCTACCTGCGAGA+GGG | 0.563461 | tig0023115:+46734 | Msa1405240:CDS |
| GCAGAGATCATCGGTGGTAA+GGG | 0.566486 | tig0023115:+45460 | Msa1405240:CDS |
| TTGGACTCCAGGTGATATTG+TGG | 0.573973 | tig0023115:+45600 | Msa1405240:CDS |
| AATATGCTTCTGTAAACAGT+AGG | 0.574800 | tig0023115:+46505 | Msa1405240:CDS |
| AATGAGTGACCTTATTCCGA+TGG | 0.576029 | tig0023115:-44550 | None:intergenic |
| TCCACAAGTTCAAGTGGCGG+CGG | 0.577331 | tig0023115:-45574 | None:intergenic |
| GAAAACATCGTCTTCTCCAT+CGG | 0.577520 | tig0023115:+44534 | Msa1405240:CDS |
| AACAGAGCATGTAACACTAT+CGG | 0.581635 | tig0023115:-46619 | None:intergenic |
| CTTGTGGAGAATTGGACTCC+AGG | 0.586001 | tig0023115:+45589 | Msa1405240:CDS |
| ATTTCGAGGTCCTATGGATG+AGG | 0.586670 | tig0023115:+45510 | Msa1405240:CDS |
| CAAGTGGTTTGTGGTGGGAA+AGG | 0.592216 | tig0023115:+45768 | Msa1405240:CDS |
| TAGTATCGAAGAAATCGATA+AGG | 0.594548 | tig0023115:+45545 | Msa1405240:CDS |
| CAATTTATAGGAATTCCCAC+TGG | 0.599832 | tig0023115:-46658 | None:intergenic |
| TGCCTCAATTGTACAACGAT+AGG | 0.611837 | tig0023115:-46832 | None:intergenic |
| AGGACGTCATTCACAAGTTG+AGG | 0.614174 | tig0023115:+46341 | Msa1405240:CDS |
| CAATTCTCCACAAGTTCAAG+TGG | 0.615692 | tig0023115:-45580 | None:intergenic |
| TCCACAATTTCCTCATCCAT+AGG | 0.616278 | tig0023115:-45520 | None:intergenic |
| TTGATATGTTAAGCGAAAGA+CGG | 0.617141 | tig0023115:-46908 | None:intergenic |
| TATACTTCCACAATATCACC+TGG | 0.621237 | tig0023115:-45607 | None:intergenic |
| CCACACGAAAAGAATTGGCA+AGG | 0.628263 | tig0023115:+46784 | Msa1405240:CDS |
| GATAGTGTTACATGCTCTGT+TGG | 0.630628 | tig0023115:+46621 | Msa1405240:CDS |
| ATGCTGAATCTACCTGCGAG+AGG | 0.634524 | tig0023115:+46733 | Msa1405240:CDS |
| AGATGACAAGTGGTTTGTGG+TGG | 0.636421 | tig0023115:+45762 | Msa1405240:CDS |
| TTCTCCACAAGTTCAAGTGG+CGG | 0.638349 | tig0023115:-45577 | None:intergenic |
| GCTGAATCTACCTGCGAGAG+GGG | 0.638768 | tig0023115:+46735 | Msa1405240:CDS |
| AGGAAACAAATTGCTGCTGT+GGG | 0.647045 | tig0023115:+46561 | Msa1405240:CDS |
| GATGACAAGTGGTTTGTGGT+GGG | 0.652201 | tig0023115:+45763 | Msa1405240:CDS |
| CTGAATCTACCTGCGAGAGG+GGG | 0.652340 | tig0023115:+46736 | Msa1405240:CDS |
| TTTCTTCTTACAGTTGAACG+AGG | 0.653790 | tig0023115:-47066 | None:intergenic |
| CCTCATACATAACAGTGTAA+CGG | 0.654519 | tig0023115:-45486 | None:intergenic |
| AGTCGTGGCAAGATGACAAG+TGG | 0.661513 | tig0023115:+45752 | Msa1405240:CDS |
| GGAAGTGCTAAGCAAAGCTG+AGG | 0.663188 | tig0023115:+45414 | Msa1405240:CDS |
| TTGATATGGACACAGAGAGG+AGG | 0.663740 | tig0023115:+46541 | Msa1405240:CDS |
| ATATGTTAAGCGAAAGACGG+AGG | 0.671653 | tig0023115:-46905 | None:intergenic |
| ATATTCGGGTCAGACAGTCG+TGG | 0.673799 | tig0023115:+45737 | Msa1405240:CDS |
| GGTAGCTGTAGTATCACCAG+TGG | 0.674097 | tig0023115:+46642 | Msa1405240:CDS |
| ATTCAAGAAAGGGACTAAGG+TGG | 0.678749 | tig0023115:+45393 | Msa1405240:CDS |
| CTATGCGCAGAGATCATCGG+TGG | 0.699678 | tig0023115:+45454 | Msa1405240:CDS |
| GTAGCTGTAGTATCACCAGT+GGG | 0.708719 | tig0023115:+46643 | Msa1405240:CDS |
| TTGTTGATATGGACACAGAG+AGG | 0.716324 | tig0023115:+46538 | Msa1405240:CDS |
| CATACATAACAGTGTAACGG+TGG | 0.739011 | tig0023115:-45483 | None:intergenic |
| AGTATGGAACTCTAACCCTG+AGG | 0.758536 | tig0023115:-47030 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTAGTATTTATG+AGG | + | tig0023115:44786-44805 | Msa1405240:intron | 10.0% |
| !! | AGAATTTAGAAATTTAAAAA+AGG | - | tig0023115:45267-45286 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTTATTATATG+TGG | + | tig0023115:45817-45836 | Msa1405240:intron | 10.0% |
| !!! | TCATTTTTCATTGTTTAATA+AGG | - | tig0023115:44820-44839 | None:intergenic | 15.0% |
| !!! | AATGTTTTTCTATTTATTGA+TGG | + | tig0023115:45175-45194 | Msa1405240:intron | 15.0% |
| !!! | GCTAATTGAAATTTTAATAA+AGG | + | tig0023115:45982-46001 | Msa1405240:intron | 15.0% |
| !!! | TTAATAAAGGAATTTTTCTT+AGG | + | tig0023115:45995-46014 | Msa1405240:intron | 15.0% |
| !! | AAATCATAAAACATAAATGA+AGG | - | tig0023115:47108-47127 | None:intergenic | 15.0% |
| !! | ATGATGATAATTGTTAAAAC+AGG | + | tig0023115:44732-44751 | Msa1405240:intron | 20.0% |
| !!! | AGTTATTTTCCAAAGTTTAA+AGG | - | tig0023115:44857-44876 | None:intergenic | 20.0% |
| !!! | TTTTGAACATAAGTTTTGTT+TGG | + | tig0023115:45006-45025 | Msa1405240:intron | 20.0% |
| !!! | TTTGAACATAAGTTTTGTTT+GGG | + | tig0023115:45007-45026 | Msa1405240:intron | 20.0% |
| !!! | TTTTTTTTCTTTCCTTTTTC+TGG | + | tig0023115:45105-45124 | Msa1405240:intron | 20.0% |
| !! | AAGTTAGCAAATTTGATATT+CGG | + | tig0023115:45722-45741 | Msa1405240:CDS | 20.0% |
| !! | AATAACAAAATGACTCATAT+GGG | - | tig0023115:45806-45825 | None:intergenic | 20.0% |
| !! | AAATAACAAAATGACTCATA+TGG | - | tig0023115:45807-45826 | None:intergenic | 20.0% |
| !! | AATATGAACTGAAGAAAATT+TGG | - | tig0023115:46064-46083 | None:intergenic | 20.0% |
| !!! | AAAAGAAAGAACTTGATAAT+CGG | + | tig0023115:46283-46302 | Msa1405240:CDS | 20.0% |
| !!! | TTCAATGTTTTAAAAGAAAC+AGG | - | tig0023115:46318-46337 | None:intergenic | 20.0% |
| ! | AGGTTCTTAATTCTATTATC+AGG | + | tig0023115:44752-44771 | Msa1405240:intron | 25.0% |
| ! | AAGAAAGAACCTTTAAACTT+TGG | + | tig0023115:44845-44864 | Msa1405240:intron | 25.0% |
| ! | ATAACTGAATTAAAGCAAAG+TGG | + | tig0023115:44871-44890 | Msa1405240:intron | 25.0% |
| ! | TTTAATCACATTTCACTGAT+TGG | + | tig0023115:44927-44946 | Msa1405240:intron | 25.0% |
| !! | GCAATTCAAAGTAAAAGTTT+TGG | + | tig0023115:45149-45168 | Msa1405240:intron | 25.0% |
| !! | TATATGTTGATTGTGATTAG+AGG | + | tig0023115:45223-45242 | Msa1405240:intron | 25.0% |
| ! | AAGTATATCAGAATTTCTCT+TGG | + | tig0023115:45623-45642 | Msa1405240:CDS | 25.0% |
| ! | AGTTAGCAAATTTGATATTC+GGG | + | tig0023115:45723-45742 | Msa1405240:CDS | 25.0% |
| ! | AAACAGAATACATTGAATCA+AGG | - | tig0023115:45923-45942 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTAAATGTTTC+TGG | + | tig0023115:46108-46127 | Msa1405240:intron | 25.0% |
| !! | TTATCAAGTTCTTTCTTTTC+AGG | - | tig0023115:46282-46301 | None:intergenic | 25.0% |
| !! | AAAGAAAGAACTTGATAATC+GGG | + | tig0023115:46284-46303 | Msa1405240:CDS | 25.0% |
| !!! | TCTTTTAAAACATTGAAACG+AGG | + | tig0023115:46321-46340 | Msa1405240:CDS | 25.0% |
| !! | ACATTTTGTACATGTTTAAG+TGG | - | tig0023115:46450-46469 | None:intergenic | 25.0% |
| ! | TACAGGAAATTGCAATTTAT+AGG | - | tig0023115:46673-46692 | None:intergenic | 25.0% |
| TGAATTAAAGCAAAGTGGAT+CGG | + | tig0023115:44876-44895 | Msa1405240:intron | 30.0% | |
| ! | TAGTATCGAAGAAATCGATA+AGG | + | tig0023115:45545-45564 | Msa1405240:CDS | 30.0% |
| !!! | GTTGGTTTTTATCAAGCTTT+TGG | + | tig0023115:45892-45911 | Msa1405240:intron | 30.0% |
| !! | GGAATTTTTCTTAGGTTGTT+CGG | + | tig0023115:46003-46022 | Msa1405240:intron | 30.0% |
| TTTATGCTTCTACTATCTTC+AGG | + | tig0023115:46164-46183 | Msa1405240:intron | 30.0% | |
| TTATGCTTCTACTATCTTCA+GGG | + | tig0023115:46165-46184 | Msa1405240:intron | 30.0% | |
| !!! | TGTTTTAAAAGAAACAGGAC+AGG | - | tig0023115:46313-46332 | None:intergenic | 30.0% |
| GCATATTTATAATCTTCAGC+TGG | - | tig0023115:46492-46511 | None:intergenic | 30.0% | |
| AATATGCTTCTGTAAACAGT+AGG | + | tig0023115:46505-46524 | Msa1405240:CDS | 30.0% | |
| AATTGGCAAGGAAAATTCAT+AGG | + | tig0023115:46796-46815 | Msa1405240:CDS | 30.0% | |
| TTGATATGTTAAGCGAAAGA+CGG | - | tig0023115:46911-46930 | None:intergenic | 30.0% | |
| AAAAATTCCTGTCATCTGAA+AGG | - | tig0023115:46987-47006 | None:intergenic | 30.0% | |
| ! | AACTTAATACCTTTTCCTCA+GGG | + | tig0023115:47015-47034 | Msa1405240:three_prime_UTR | 30.0% |
| TTCACTCTCTTCTTCTTATG+CGG | - | tig0023115:44495-44514 | None:intergenic | 35.0% | |
| ! | TGACTTGTAAGACCAGAAAA+AGG | - | tig0023115:45120-45139 | None:intergenic | 35.0% |
| CCTCATACATAACAGTGTAA+CGG | - | tig0023115:45489-45508 | None:intergenic | 35.0% | |
| CGTTACACTGTTATGTATGA+GGG | + | tig0023115:45487-45506 | Msa1405240:CDS | 35.0% | |
| TATACTTCCACAATATCACC+TGG | - | tig0023115:45610-45629 | None:intergenic | 35.0% | |
| TCAGAATTTCTCTTGGAAGA+TGG | + | tig0023115:45630-45649 | Msa1405240:CDS | 35.0% | |
| TTGCAGATCATATGTTGAGT+TGG | + | tig0023115:45874-45893 | Msa1405240:intron | 35.0% | |
| AGATGTAACAAAGCAAGAGT+TGG | + | tig0023115:46411-46430 | Msa1405240:CDS | 35.0% | |
| TGTACATGTTTAAGTGGTGT+GGG | - | tig0023115:46444-46463 | None:intergenic | 35.0% | |
| TTGTACATGTTTAAGTGGTG+TGG | - | tig0023115:46445-46464 | None:intergenic | 35.0% | |
| TCTGTAAACAGTAGGAAGAA+TGG | + | tig0023115:46513-46532 | Msa1405240:CDS | 35.0% | |
| CTGTAAACAGTAGGAAGAAT+GGG | + | tig0023115:46514-46533 | Msa1405240:CDS | 35.0% | |
| GAAGAATGGGATTGTTGATA+TGG | + | tig0023115:46527-46546 | Msa1405240:CDS | 35.0% | |
| AACAGAGCATGTAACACTAT+CGG | - | tig0023115:46622-46641 | None:intergenic | 35.0% | |
| CAATTTATAGGAATTCCCAC+TGG | - | tig0023115:46661-46680 | None:intergenic | 35.0% | |
| GAACTGTCTACATCTTCAAA+TGG | - | tig0023115:46705-46724 | None:intergenic | 35.0% | |
| TAGTATTCCTTTCAGATGAC+AGG | + | tig0023115:46977-46996 | Msa1405240:exon | 35.0% | |
| ! | CAACTTAATACCTTTTCCTC+AGG | + | tig0023115:47014-47033 | Msa1405240:three_prime_UTR | 35.0% |
| AGGCTAGCAAAAATCTAGTA+TGG | - | tig0023115:47049-47068 | None:intergenic | 35.0% | |
| TTTCTTCTTACAGTTGAACG+AGG | - | tig0023115:47069-47088 | None:intergenic | 35.0% | |
| GAAAACATCGTCTTCTCCAT+CGG | + | tig0023115:44534-44553 | Msa1405240:CDS | 40.0% | |
| AATGAGTGACCTTATTCCGA+TGG | - | tig0023115:44553-44572 | None:intergenic | 40.0% | |
| ACGATCATGCGATTCAAGAA+AGG | + | tig0023115:45382-45401 | Msa1405240:CDS | 40.0% | |
| CGATCATGCGATTCAAGAAA+GGG | + | tig0023115:45383-45402 | Msa1405240:CDS | 40.0% | |
| ATTCAAGAAAGGGACTAAGG+TGG | + | tig0023115:45393-45412 | Msa1405240:CDS | 40.0% | |
| CATACATAACAGTGTAACGG+TGG | - | tig0023115:45486-45505 | None:intergenic | 40.0% | |
| CCGTTACACTGTTATGTATG+AGG | + | tig0023115:45486-45505 | Msa1405240:CDS | 40.0% | |
| GTTATGTATGAGGGATTTCG+AGG | + | tig0023115:45496-45515 | Msa1405240:CDS | 40.0% | |
| TCCTATGGATGAGGAAATTG+TGG | + | tig0023115:45519-45538 | Msa1405240:CDS | 40.0% | |
| TCCACAATTTCCTCATCCAT+AGG | - | tig0023115:45523-45542 | None:intergenic | 40.0% | |
| CAATTCTCCACAAGTTCAAG+TGG | - | tig0023115:45583-45602 | None:intergenic | 40.0% | |
| CACTTGAACTTGTGGAGAAT+TGG | + | tig0023115:45581-45600 | Msa1405240:CDS | 40.0% | |
| TTTCTCTTGGAAGATGGCTA+CGG | + | tig0023115:45636-45655 | Msa1405240:CDS | 40.0% | |
| !!! | GCTACGGTTTTGAAGGTTTT+GGG | + | tig0023115:45652-45671 | Msa1405240:CDS | 40.0% |
| !!! | CTACGGTTTTGAAGGTTTTG+GGG | + | tig0023115:45653-45672 | Msa1405240:CDS | 40.0% |
| ! | GGAAAAAGTGCATTGCTGTT+AGG | + | tig0023115:45674-45693 | Msa1405240:CDS | 40.0% |
| ! | TTTGTACTGGCAAGGACAAT+TGG | - | tig0023115:45849-45868 | None:intergenic | 40.0% |
| ATCTGCAACCACATTTGTAC+TGG | - | tig0023115:45862-45881 | None:intergenic | 40.0% | |
| TGAACCTCTGCCAAAGTTAA+GGG | + | tig0023115:46371-46390 | Msa1405240:CDS | 40.0% | |
| TCCTCAATTGCCCTTAACTT+TGG | - | tig0023115:46384-46403 | None:intergenic | 40.0% | |
| TTAAGGGCAATTGAGGATGA+TGG | + | tig0023115:46387-46406 | Msa1405240:CDS | 40.0% | |
| TTGTTGATATGGACACAGAG+AGG | + | tig0023115:46538-46557 | Msa1405240:CDS | 40.0% | |
| AGGAAACAAATTGCTGCTGT+GGG | + | tig0023115:46561-46580 | Msa1405240:CDS | 40.0% | |
| GATAGTGTTACATGCTCTGT+TGG | + | tig0023115:46621-46640 | Msa1405240:CDS | 40.0% | |
| TTGCAATTTCCTGTATCTGC+AGG | + | tig0023115:46678-46697 | Msa1405240:CDS | 40.0% | |
| ! | CTTGCCAATTCTTTTCGTGT+GGG | - | tig0023115:46786-46805 | None:intergenic | 40.0% |
| TGCCTATCGTTGTACAATTG+AGG | + | tig0023115:46830-46849 | Msa1405240:CDS | 40.0% | |
| TGCCTCAATTGTACAACGAT+AGG | - | tig0023115:46835-46854 | None:intergenic | 40.0% | |
| GCTTCTTGTTCCCAACTTAA+AGG | - | tig0023115:46873-46892 | None:intergenic | 40.0% | |
| ATATGTTAAGCGAAAGACGG+AGG | - | tig0023115:46908-46927 | None:intergenic | 40.0% | |
| TCGTCTTCTCCATCGGAATA+AGG | + | tig0023115:44541-44560 | Msa1405240:CDS | 45.0% | |
| GCGATTCAAGAAAGGGACTA+AGG | + | tig0023115:45390-45409 | Msa1405240:CDS | 45.0% | |
| ATTTCGAGGTCCTATGGATG+AGG | + | tig0023115:45510-45529 | Msa1405240:CDS | 45.0% | |
| TTCTCCACAAGTTCAAGTGG+CGG | - | tig0023115:45580-45599 | None:intergenic | 45.0% | |
| TTGGACTCCAGGTGATATTG+TGG | + | tig0023115:45600-45619 | Msa1405240:CDS | 45.0% | |
| !! | GAAGATGGCTACGGTTTTGA+AGG | + | tig0023115:45645-45664 | Msa1405240:CDS | 45.0% |
| !!! | GGCTACGGTTTTGAAGGTTT+TGG | + | tig0023115:45651-45670 | Msa1405240:CDS | 45.0% |
| ! | TGCATTGCTGTTAGGCTACT+TGG | + | tig0023115:45682-45701 | Msa1405240:CDS | 45.0% |
| TAGGCTACTTGGATCTTCTG+TGG | + | tig0023115:45693-45712 | Msa1405240:CDS | 45.0% | |
| GCAAGATGACAAGTGGTTTG+TGG | + | tig0023115:45759-45778 | Msa1405240:CDS | 45.0% | |
| ! | AGATGACAAGTGGTTTGTGG+TGG | + | tig0023115:45762-45781 | Msa1405240:CDS | 45.0% |
| ! | GATGACAAGTGGTTTGTGGT+GGG | + | tig0023115:45763-45782 | Msa1405240:CDS | 45.0% |
| TGTCCTTGCCAGTACAAATG+TGG | + | tig0023115:45851-45870 | Msa1405240:intron | 45.0% | |
| ! | CAACCACATTTGTACTGGCA+AGG | - | tig0023115:45857-45876 | None:intergenic | 45.0% |
| GGTTCTGCTAGCTGTGATAA+TGG | + | tig0023115:46186-46205 | Msa1405240:CDS | 45.0% | |
| AGGACGTCATTCACAAGTTG+AGG | + | tig0023115:46341-46360 | Msa1405240:CDS | 45.0% | |
| CTGAACCTCTGCCAAAGTTA+AGG | + | tig0023115:46370-46389 | Msa1405240:CDS | 45.0% | |
| ATTGCCCTTAACTTTGGCAG+AGG | - | tig0023115:46378-46397 | None:intergenic | 45.0% | |
| GCCAAAGTTAAGGGCAATTG+AGG | + | tig0023115:46380-46399 | Msa1405240:CDS | 45.0% | |
| CATGTTTAAGTGGTGTGGGT+GGG | - | tig0023115:46440-46459 | None:intergenic | 45.0% | |
| ACATGTTTAAGTGGTGTGGG+TGG | - | tig0023115:46441-46460 | None:intergenic | 45.0% | |
| TTGATATGGACACAGAGAGG+AGG | + | tig0023115:46541-46560 | Msa1405240:CDS | 45.0% | |
| GAGGAAACAAATTGCTGCTG+TGG | + | tig0023115:46560-46579 | Msa1405240:CDS | 45.0% | |
| GTAGCTGTAGTATCACCAGT+GGG | + | tig0023115:46643-46662 | Msa1405240:CDS | 45.0% | |
| TCAAATGGACCTGCAGATAC+AGG | - | tig0023115:46690-46709 | None:intergenic | 45.0% | |
| ! | CAATTCTTTTCGTGTGGGAC+GGG | - | tig0023115:46781-46800 | None:intergenic | 45.0% |
| ! | CCAATTCTTTTCGTGTGGGA+CGG | - | tig0023115:46782-46801 | None:intergenic | 45.0% |
| ! | CCTTGCCAATTCTTTTCGTG+TGG | - | tig0023115:46787-46806 | None:intergenic | 45.0% |
| CCACACGAAAAGAATTGGCA+AGG | + | tig0023115:46784-46803 | Msa1405240:CDS | 45.0% | |
| !! | ATTGAGGCATTGTTTGCGTC+AGG | + | tig0023115:46846-46865 | Msa1405240:CDS | 45.0% |
| TTGCGTCAGGACCTTTAAGT+TGG | + | tig0023115:46859-46878 | Msa1405240:CDS | 45.0% | |
| ! | TGCGTCAGGACCTTTAAGTT+GGG | + | tig0023115:46860-46879 | Msa1405240:CDS | 45.0% |
| GAACTCTAACCCTGAGGAAA+AGG | - | tig0023115:47027-47046 | None:intergenic | 45.0% | |
| AGTATGGAACTCTAACCCTG+AGG | - | tig0023115:47033-47052 | None:intergenic | 45.0% | |
| !! | GGAAGTGCTAAGCAAAGCTG+AGG | + | tig0023115:45414-45433 | Msa1405240:CDS | 50.0% |
| TGGCTATGCGCAGAGATCAT+CGG | + | tig0023115:45451-45470 | Msa1405240:CDS | 50.0% | |
| GCAGAGATCATCGGTGGTAA+GGG | + | tig0023115:45460-45479 | Msa1405240:CDS | 50.0% | |
| TGAGGGATTTCGAGGTCCTA+TGG | + | tig0023115:45504-45523 | Msa1405240:CDS | 50.0% | |
| CTTGTGGAGAATTGGACTCC+AGG | + | tig0023115:45589-45608 | Msa1405240:CDS | 50.0% | |
| ATATTCGGGTCAGACAGTCG+TGG | + | tig0023115:45737-45756 | Msa1405240:CDS | 50.0% | |
| AGTCGTGGCAAGATGACAAG+TGG | + | tig0023115:45752-45771 | Msa1405240:CDS | 50.0% | |
| ! | CAAGTGGTTTGTGGTGGGAA+AGG | + | tig0023115:45768-45787 | Msa1405240:CDS | 50.0% |
| TCTTCAGCTGGCACATGTCT+TGG | - | tig0023115:46480-46499 | None:intergenic | 50.0% | |
| ! | GCTGCTGTGGGTTGTTCATT+TGG | + | tig0023115:46573-46592 | Msa1405240:CDS | 50.0% |
| GGTAGCTGTAGTATCACCAG+TGG | + | tig0023115:46642-46661 | Msa1405240:CDS | 50.0% | |
| ATGCTGAATCTACCTGCGAG+AGG | + | tig0023115:46733-46752 | Msa1405240:CDS | 50.0% | |
| TGCTGAATCTACCTGCGAGA+GGG | + | tig0023115:46734-46753 | Msa1405240:CDS | 50.0% | |
| CCGTCCCACACGAAAAGAAT+TGG | + | tig0023115:46779-46798 | Msa1405240:CDS | 50.0% | |
| ! | AGCAAAGCTGAGGTGCCTTC+TGG | + | tig0023115:45424-45443 | Msa1405240:CDS | 55.0% |
| GATGATCTCTGCGCATAGCC+AGG | - | tig0023115:45452-45471 | None:intergenic | 55.0% | |
| CTATGCGCAGAGATCATCGG+TGG | + | tig0023115:45454-45473 | Msa1405240:CDS | 55.0% | |
| CGCAGAGATCATCGGTGGTA+AGG | + | tig0023115:45459-45478 | Msa1405240:CDS | 55.0% | |
| TCCACAAGTTCAAGTGGCGG+CGG | - | tig0023115:45577-45596 | None:intergenic | 55.0% | |
| GCTGAATCTACCTGCGAGAG+GGG | + | tig0023115:46735-46754 | Msa1405240:CDS | 55.0% | |
| CTGAATCTACCTGCGAGAGG+GGG | + | tig0023115:46736-46755 | Msa1405240:CDS | 55.0% | |
| AGTTCAAGTGGCGGCGGACA+CGG | - | tig0023115:45571-45590 | None:intergenic | 60.0% | |
| TCCGCCGCCACTTGAACTTG+TGG | + | tig0023115:45573-45592 | Msa1405240:CDS | 60.0% | |
| ! | TACCTGCGAGAGGGGGTACA+TGG | + | tig0023115:46743-46762 | Msa1405240:CDS | 60.0% |
| TTCCATGTACCCCCTCTCGC+AGG | - | tig0023115:46748-46767 | None:intergenic | 60.0% | |
| !! | CTGAGGTGCCTTCTGGCTCC+TGG | + | tig0023115:45431-45450 | Msa1405240:CDS | 65.0% |
| GCGCATAGCCAGGAGCCAGA+AGG | - | tig0023115:45442-45461 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023115 | gene | 44468 | 47153 | 44468 | ID=Msa1405240;Name=Msa1405240 |
| tig0023115 | mRNA | 44468 | 47153 | 44468 | ID=Msa1405240-mRNA-1;Parent=Msa1405240;Name=Msa1405240-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|1|1|1|0.5|0.33|3|158|440 |
| tig0023115 | exon | 44468 | 44562 | 44468 | ID=Msa1405240-mRNA-1:exon:23977;Parent=Msa1405240-mRNA-1 |
| tig0023115 | exon | 45372 | 45789 | 45372 | ID=Msa1405240-mRNA-1:exon:23978;Parent=Msa1405240-mRNA-1 |
| tig0023115 | exon | 46186 | 47153 | 46186 | ID=Msa1405240-mRNA-1:exon:23979;Parent=Msa1405240-mRNA-1 |
| tig0023115 | CDS | 44468 | 44562 | 44468 | ID=Msa1405240-mRNA-1:cds;Parent=Msa1405240-mRNA-1 |
| tig0023115 | CDS | 45372 | 45789 | 45372 | ID=Msa1405240-mRNA-1:cds;Parent=Msa1405240-mRNA-1 |
| tig0023115 | CDS | 46186 | 46995 | 46186 | ID=Msa1405240-mRNA-1:cds;Parent=Msa1405240-mRNA-1 |
| tig0023115 | three_prime_UTR | 46996 | 47153 | 46996 | ID=Msa1405240-mRNA-1:three_prime_utr;Parent=Msa1405240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
