Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329860 | A0A072UR05 | 94.045 | 403 | 24 | 0 | 38 | 440 | 1 | 403 | 0.0 | 787 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1225090 | Msa1329860 | 0.928051 | 4.982903e-92 | -8.615850e-47 |
| Msa1329860 | Msa1405240 | 0.870247 | 1.685675e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329860 | MtrunA17_Chr4g0063231 | 83.478 | 345 | 18 | 1 | 38 | 382 | 1 | 306 | 0.0 | 579 |
| Msa1329860 | MtrunA17_Chr3g0138081 | 31.288 | 326 | 197 | 8 | 38 | 357 | 1 | 305 | 1.57e-31 | 124 |
| Msa1329860 | MtrunA17_Chr1g0192931 | 29.710 | 138 | 92 | 3 | 38 | 172 | 54 | 189 | 4.80e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329860 | AT4G32440.1 | 38.653 | 401 | 210 | 9 | 38 | 433 | 1 | 370 | 2.75e-73 | 235 |
| Msa1329860 | AT4G32440.2 | 38.071 | 394 | 208 | 9 | 38 | 426 | 1 | 363 | 4.24e-69 | 224 |
| Msa1329860 | AT5G20030.2 | 38.424 | 406 | 167 | 13 | 38 | 440 | 1 | 326 | 2.64e-64 | 210 |
| Msa1329860 | AT5G20030.1 | 38.424 | 406 | 167 | 13 | 38 | 440 | 1 | 326 | 2.64e-64 | 210 |
| Msa1329860 | AT4G32440.3 | 33.987 | 306 | 172 | 7 | 38 | 336 | 1 | 283 | 1.56e-41 | 149 |
| Msa1329860 | AT2G25590.1 | 47.101 | 138 | 71 | 2 | 38 | 174 | 1 | 137 | 1.79e-34 | 132 |
Find 104 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTGTTCCCAACTTAA+AGG | 0.192880 | 8_4:+48805156 | None:intergenic |
| AAGTTAGCAAATTTGATATT+CGG | 0.271483 | 8_4:-48806304 | Msa1329860:CDS |
| TGCATTGCTGTTAGGCTACT+TGG | 0.324453 | 8_4:-48806344 | Msa1329860:CDS |
| TACAGGAAATTGCAATTTAT+AGG | 0.333504 | 8_4:+48805356 | None:intergenic |
| GCTGCTGTGGGTTGTTCATT+TGG | 0.339068 | 8_4:-48805453 | Msa1329860:CDS |
| CACTTGAACTTGTGGAGAAT+TGG | 0.339132 | 8_4:-48806445 | Msa1329860:CDS |
| AGCAAAGCTGAGGTGCCTTC+TGG | 0.348934 | 8_4:-48806602 | Msa1329860:CDS |
| GAAGAATGGGATTGTTGATA+TGG | 0.349536 | 8_4:-48805499 | Msa1329860:CDS |
| AGTTAGCAAATTTGATATTC+GGG | 0.355743 | 8_4:-48806303 | Msa1329860:CDS |
| AAAAGAAAGAACTTGATAAT+CGG | 0.363802 | 8_4:-48805743 | Msa1329860:CDS |
| CTGAACCTCTGCCAAAGTTA+AGG | 0.366412 | 8_4:-48805656 | Msa1329860:CDS |
| AATTGGCAAGGAAAATTCAT+AGG | 0.383309 | 8_4:-48805230 | Msa1329860:CDS |
| TCGTCTTCTCCATCGGAATA+AGG | 0.390921 | 8_4:-48807482 | Msa1329860:intron |
| GATAGTACTGCTCTGTTTGT+TGG | 0.400828 | 8_4:-48805405 | Msa1329860:CDS |
| GGTTCTGCTAGCTGTGATAA+TGG | 0.406897 | 8_4:-48805840 | Msa1329860:CDS |
| CGCAGAGATCATCGGTGGTA+AGG | 0.424268 | 8_4:-48806567 | Msa1329860:CDS |
| CCGTTACACTGTTATGTATG+AGG | 0.427399 | 8_4:-48806540 | Msa1329860:CDS |
| CTGAGGTGCCTTCTGGCTCC+TGG | 0.431731 | 8_4:-48806595 | Msa1329860:CDS |
| TGAACCTCTGCCAAAGTTAA+GGG | 0.432025 | 8_4:-48805655 | Msa1329860:CDS |
| CCGTCCCACACGAAAAGAAT+TGG | 0.434168 | 8_4:-48805247 | Msa1329860:CDS |
| TCCTCAATTGCCCTTAACTT+TGG | 0.435600 | 8_4:+48805645 | None:intergenic |
| TCAAATGGACCTGCAGATAC+AGG | 0.435709 | 8_4:+48805339 | None:intergenic |
| TCTTCAGCTGGCACATGTCT+TGG | 0.438373 | 8_4:+48805549 | None:intergenic |
| ATTGAGGCATTGTTTGCGTC+AGG | 0.438499 | 8_4:-48805180 | Msa1329860:CDS |
| GAACTCTAACCCTGAGGAAA+AGG | 0.446066 | 8_4:+48805002 | None:intergenic |
| CTGTAAACAGTAGGAAGAAT+GGG | 0.451080 | 8_4:-48805512 | Msa1329860:CDS |
| AAAGAAAGAACTTGATAATC+GGG | 0.459096 | 8_4:-48805742 | Msa1329860:CDS |
| TAGTATTCCTTTCAGATGAC+AGG | 0.465640 | 8_4:-48805049 | Msa1329860:exon |
| TTGCAATTTCCTGTATCTGC+AGG | 0.466258 | 8_4:-48805348 | Msa1329860:CDS |
| TGCGTCAGGACCTTTAAGTT+GGG | 0.468318 | 8_4:-48805166 | Msa1329860:CDS |
| TTGCGTCAGGACCTTTAAGT+TGG | 0.469617 | 8_4:-48805167 | Msa1329860:CDS |
| AAATCATAAAACATAAATGA+AGG | 0.470683 | 8_4:+48804921 | None:intergenic |
| TTGTACATGTTTAAGTGGTG+TGG | 0.472803 | 8_4:+48805584 | None:intergenic |
| TGAGGGATTTCGAGGTCCTA+TGG | 0.472833 | 8_4:-48806522 | Msa1329860:CDS |
| TCTGTAAACAGTAGGAAGAA+TGG | 0.480789 | 8_4:-48805513 | Msa1329860:CDS |
| TCAGAATTTCTCTTGGAAGA+TGG | 0.485444 | 8_4:-48806396 | Msa1329860:CDS |
| GATGATCTCTGCGCATAGCC+AGG | 0.490942 | 8_4:+48806577 | None:intergenic |
| ACGATCATGCGATTCAAGAA+AGG | 0.491296 | 8_4:-48806644 | Msa1329860:CDS |
| TGTACATGTTTAAGTGGTGT+GGG | 0.498268 | 8_4:+48805585 | None:intergenic |
| GCCAAAGTTAAGGGCAATTG+AGG | 0.503706 | 8_4:-48805646 | Msa1329860:CDS |
| CGATCATGCGATTCAAGAAA+GGG | 0.505344 | 8_4:-48806643 | Msa1329860:CDS |
| GAACTGTCTACATCTTCAAA+TGG | 0.507082 | 8_4:+48805324 | None:intergenic |
| CATGTTTAAGTGGTGTGGGT+GGG | 0.509663 | 8_4:+48805589 | None:intergenic |
| TTCACTCTCTTCTTCTTATG+CGG | 0.511891 | 8_4:+48807531 | None:intergenic |
| TTAAGGGCAATTGAGGATGA+TGG | 0.517889 | 8_4:-48805639 | Msa1329860:CDS |
| AGATGTAACAAAGCAAGAGT+TGG | 0.522342 | 8_4:-48805615 | Msa1329860:CDS |
| TCCTATGGATGAGGAAATTG+TGG | 0.522986 | 8_4:-48806507 | Msa1329860:CDS |
| AGTTCAAGTGGCGGCGGACA+CGG | 0.523763 | 8_4:+48806458 | None:intergenic |
| GAGGAAACAAATTGCTGCTG+TGG | 0.532654 | 8_4:-48805466 | Msa1329860:CDS |
| GCGCATAGCCAGGAGCCAGA+AGG | 0.534346 | 8_4:+48806587 | None:intergenic |
| TTTCTCTTGGAAGATGGCTA+CGG | 0.534357 | 8_4:-48806390 | Msa1329860:CDS |
| AAGTATATCAGAATTTCTCT+TGG | 0.536145 | 8_4:-48806403 | Msa1329860:CDS |
| GCGATTCAAGAAAGGGACTA+AGG | 0.538395 | 8_4:-48806636 | Msa1329860:CDS |
| TAGGCTACTTGGATCTTCTG+TGG | 0.539977 | 8_4:-48806333 | Msa1329860:CDS |
| TCCGCCGCCACTTGAACTTG+TGG | 0.540574 | 8_4:-48806453 | Msa1329860:CDS |
| CGTTACACTGTTATGTATGA+GGG | 0.542469 | 8_4:-48806539 | Msa1329860:CDS |
| TGCCTATCGTTGTACAATTG+AGG | 0.543589 | 8_4:-48805196 | Msa1329860:CDS |
| ACATGTTTAAGTGGTGTGGG+TGG | 0.546027 | 8_4:+48805588 | None:intergenic |
| TGGCTATGCGCAGAGATCAT+CGG | 0.547396 | 8_4:-48806575 | Msa1329860:CDS |
| GCATATTTATAATCTTCAGC+TGG | 0.551671 | 8_4:+48805537 | None:intergenic |
| GTTATGTATGAGGGATTTCG+AGG | 0.556559 | 8_4:-48806530 | Msa1329860:CDS |
| GCAAGATGACAAGTGGTTTG+TGG | 0.557509 | 8_4:-48806267 | Msa1329860:CDS |
| ATTGCCCTTAACTTTGGCAG+AGG | 0.559077 | 8_4:+48805651 | None:intergenic |
| TGCTGAATCTACCTGCGAGA+GGG | 0.563461 | 8_4:-48805292 | Msa1329860:CDS |
| GCAGAGATCATCGGTGGTAA+GGG | 0.566486 | 8_4:-48806566 | Msa1329860:CDS |
| TTGGACTCCAGGTGATATTG+TGG | 0.573973 | 8_4:-48806426 | Msa1329860:CDS |
| AATATGCTTCTGTAAACAGT+AGG | 0.574800 | 8_4:-48805521 | Msa1329860:CDS |
| AATGAGTGACCTTATTCCGA+TGG | 0.576029 | 8_4:+48807473 | None:intergenic |
| TCCACAAGTTCAAGTGGCGG+CGG | 0.577331 | 8_4:+48806452 | None:intergenic |
| GAAAACATCGTCTTCTCCAT+CGG | 0.577520 | 8_4:-48807489 | Msa1329860:CDS |
| CTTGTGGAGAATTGGACTCC+AGG | 0.586001 | 8_4:-48806437 | Msa1329860:CDS |
| ATTTCGAGGTCCTATGGATG+AGG | 0.586670 | 8_4:-48806516 | Msa1329860:CDS |
| CAAGTGGTTTGTGGTGGGAA+AGG | 0.592216 | 8_4:-48806258 | Msa1329860:intron |
| TAGTATCGAAGAAATCGATA+AGG | 0.594548 | 8_4:-48806481 | Msa1329860:CDS |
| AACAAACAGAGCAGTACTAT+CGG | 0.596448 | 8_4:+48805407 | None:intergenic |
| CAATTTATAGGAATTCCCAC+TGG | 0.599832 | 8_4:+48805368 | None:intergenic |
| TGCCTCAATTGTACAACGAT+AGG | 0.611837 | 8_4:+48805194 | None:intergenic |
| AGGACGTCATTCACAAGTTG+AGG | 0.614174 | 8_4:-48805685 | Msa1329860:CDS |
| CAATTCTCCACAAGTTCAAG+TGG | 0.615692 | 8_4:+48806446 | None:intergenic |
| TCCACAATTTCCTCATCCAT+AGG | 0.616278 | 8_4:+48806506 | None:intergenic |
| TTGATATGTTAAGCGAAAGA+CGG | 0.617141 | 8_4:+48805118 | None:intergenic |
| TATACTTCCACAATATCACC+TGG | 0.621237 | 8_4:+48806419 | None:intergenic |
| CCACACGAAAAGAATTGGCA+AGG | 0.628263 | 8_4:-48805242 | Msa1329860:CDS |
| ATGCTGAATCTACCTGCGAG+AGG | 0.634524 | 8_4:-48805293 | Msa1329860:CDS |
| AGATGACAAGTGGTTTGTGG+TGG | 0.636421 | 8_4:-48806264 | Msa1329860:CDS |
| TTCTCCACAAGTTCAAGTGG+CGG | 0.638349 | 8_4:+48806449 | None:intergenic |
| GCTGAATCTACCTGCGAGAG+GGG | 0.638768 | 8_4:-48805291 | Msa1329860:CDS |
| AGGAAACAAATTGCTGCTGT+GGG | 0.647045 | 8_4:-48805465 | Msa1329860:CDS |
| GATGACAAGTGGTTTGTGGT+GGG | 0.652201 | 8_4:-48806263 | Msa1329860:CDS |
| CTGAATCTACCTGCGAGAGG+GGG | 0.652340 | 8_4:-48805290 | Msa1329860:CDS |
| TTTCTTCTTACAGTTGAACG+AGG | 0.653790 | 8_4:+48804960 | None:intergenic |
| CCTCATACATAACAGTGTAA+CGG | 0.654519 | 8_4:+48806540 | None:intergenic |
| AGTCGTGGCAAGATGACAAG+TGG | 0.661513 | 8_4:-48806274 | Msa1329860:CDS |
| GGAAGTGCTAAGCAAAGCTG+AGG | 0.663188 | 8_4:-48806612 | Msa1329860:CDS |
| TTGATATGGACACAGAGAGG+AGG | 0.663740 | 8_4:-48805485 | Msa1329860:CDS |
| ATATGTTAAGCGAAAGACGG+AGG | 0.671653 | 8_4:+48805121 | None:intergenic |
| ATATTCGGGTCAGACAGTCG+TGG | 0.673799 | 8_4:-48806289 | Msa1329860:CDS |
| GGTAGCTGTAGTATCACCAG+TGG | 0.674097 | 8_4:-48805384 | Msa1329860:CDS |
| ATTCAAGAAAGGGACTAAGG+TGG | 0.678749 | 8_4:-48806633 | Msa1329860:CDS |
| CTATGCGCAGAGATCATCGG+TGG | 0.699678 | 8_4:-48806572 | Msa1329860:CDS |
| GTAGCTGTAGTATCACCAGT+GGG | 0.708719 | 8_4:-48805383 | Msa1329860:CDS |
| TTGTTGATATGGACACAGAG+AGG | 0.716324 | 8_4:-48805488 | Msa1329860:CDS |
| CATACATAACAGTGTAACGG+TGG | 0.739011 | 8_4:+48806543 | None:intergenic |
| AGTATGGAACTCTAACCCTG+AGG | 0.758536 | 8_4:+48804996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTTTAGTATTTATG+AGG | - | chr8_4:48805213-48805232 | Msa1329860:CDS | 10.0% |
| !! | AGAATTTAGAAATTTAAAAA+AGG | + | chr8_4:48805691-48805710 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTTATTATATG+TGG | - | chr8_4:48806241-48806260 | Msa1329860:intron | 10.0% |
| !!! | TCATTTTTCATTGTTTAATA+AGG | + | chr8_4:48805246-48805265 | None:intergenic | 15.0% |
| !!! | AATGTTTTTCTATTTATTGA+TGG | - | chr8_4:48805599-48805618 | Msa1329860:CDS | 15.0% |
| !!! | GCTAATTGAAATTTTAATAA+AGG | - | chr8_4:48806406-48806425 | Msa1329860:CDS | 15.0% |
| !!! | TTAATAAAGGAATTTTTCTT+AGG | - | chr8_4:48806419-48806438 | Msa1329860:CDS | 15.0% |
| !! | AAATCATAAAACATAAATGA+AGG | + | chr8_4:48807532-48807551 | None:intergenic | 15.0% |
| !! | ATGATGATAATTGTTAAAAC+AGG | - | chr8_4:48805159-48805178 | Msa1329860:CDS | 20.0% |
| !!! | AGTTATTTTCCAAAGTTTAA+AGG | + | chr8_4:48805283-48805302 | None:intergenic | 20.0% |
| !!! | TTTTGAACATAAGTTTTGTT+TGG | - | chr8_4:48805431-48805450 | Msa1329860:CDS | 20.0% |
| !!! | TTTGAACATAAGTTTTGTTT+GGG | - | chr8_4:48805432-48805451 | Msa1329860:CDS | 20.0% |
| !!! | TTTTTTTTCTTTCCTTTTTC+TGG | - | chr8_4:48805529-48805548 | Msa1329860:CDS | 20.0% |
| !! | AAGTTAGCAAATTTGATATT+CGG | - | chr8_4:48806146-48806165 | Msa1329860:intron | 20.0% |
| !! | AATAACAAAATGACTCATAT+GGG | + | chr8_4:48806230-48806249 | None:intergenic | 20.0% |
| !! | AAATAACAAAATGACTCATA+TGG | + | chr8_4:48806231-48806250 | None:intergenic | 20.0% |
| !! | AATATGAACTGAAGAAAATT+TGG | + | chr8_4:48806488-48806507 | None:intergenic | 20.0% |
| !!! | AAAAGAAAGAACTTGATAAT+CGG | - | chr8_4:48806707-48806726 | Msa1329860:intron | 20.0% |
| !!! | TTCAATGTTTTAAAAGAAAC+AGG | + | chr8_4:48806742-48806761 | None:intergenic | 20.0% |
| ! | AGGTTCTTAATTCTATTATC+AGG | - | chr8_4:48805179-48805198 | Msa1329860:CDS | 25.0% |
| ! | AAGAAAGAACCTTTAAACTT+TGG | - | chr8_4:48805271-48805290 | Msa1329860:CDS | 25.0% |
| ! | ATAACTGAATTAAAGCAAAG+TGG | - | chr8_4:48805297-48805316 | Msa1329860:CDS | 25.0% |
| ! | TTTAATCACATTTCACTGAT+TGG | - | chr8_4:48805353-48805372 | Msa1329860:CDS | 25.0% |
| !! | GCAATTCAAAGTAAAAGTTT+TGG | - | chr8_4:48805573-48805592 | Msa1329860:CDS | 25.0% |
| !! | TATATGTTGATTGTGATTAG+AGG | - | chr8_4:48805647-48805666 | Msa1329860:CDS | 25.0% |
| ! | AAGTATATCAGAATTTCTCT+TGG | - | chr8_4:48806047-48806066 | Msa1329860:intron | 25.0% |
| ! | AGTTAGCAAATTTGATATTC+GGG | - | chr8_4:48806147-48806166 | Msa1329860:intron | 25.0% |
| ! | AAACAGAATACATTGAATCA+AGG | + | chr8_4:48806347-48806366 | None:intergenic | 25.0% |
| !! | GTTTTCTATGTAAATGTTTC+TGG | - | chr8_4:48806532-48806551 | Msa1329860:CDS | 25.0% |
| !! | TTATCAAGTTCTTTCTTTTC+AGG | + | chr8_4:48806706-48806725 | None:intergenic | 25.0% |
| !! | AAAGAAAGAACTTGATAATC+GGG | - | chr8_4:48806708-48806727 | Msa1329860:intron | 25.0% |
| !!! | TCTTTTAAAACATTGAAACG+AGG | - | chr8_4:48806745-48806764 | Msa1329860:intron | 25.0% |
| !! | ACATTTTGTACATGTTTAAG+TGG | + | chr8_4:48806874-48806893 | None:intergenic | 25.0% |
| ! | TACAGGAAATTGCAATTTAT+AGG | + | chr8_4:48807097-48807116 | None:intergenic | 25.0% |
| TGAATTAAAGCAAAGTGGAT+CGG | - | chr8_4:48805302-48805321 | Msa1329860:CDS | 30.0% | |
| ! | TAGTATCGAAGAAATCGATA+AGG | - | chr8_4:48805969-48805988 | Msa1329860:intron | 30.0% |
| !!! | GTTGGTTTTTATCAAGCTTT+TGG | - | chr8_4:48806316-48806335 | Msa1329860:CDS | 30.0% |
| !! | GGAATTTTTCTTAGGTTGTT+CGG | - | chr8_4:48806427-48806446 | Msa1329860:CDS | 30.0% |
| TTTATGCTTCTACTATCTTC+AGG | - | chr8_4:48806588-48806607 | Msa1329860:CDS | 30.0% | |
| TTATGCTTCTACTATCTTCA+GGG | - | chr8_4:48806589-48806608 | Msa1329860:CDS | 30.0% | |
| !!! | TGTTTTAAAAGAAACAGGAC+AGG | + | chr8_4:48806737-48806756 | None:intergenic | 30.0% |
| GCATATTTATAATCTTCAGC+TGG | + | chr8_4:48806916-48806935 | None:intergenic | 30.0% | |
| AATATGCTTCTGTAAACAGT+AGG | - | chr8_4:48806929-48806948 | Msa1329860:intron | 30.0% | |
| AATTGGCAAGGAAAATTCAT+AGG | - | chr8_4:48807220-48807239 | Msa1329860:intron | 30.0% | |
| TTGATATGTTAAGCGAAAGA+CGG | + | chr8_4:48807335-48807354 | None:intergenic | 30.0% | |
| AAAAATTCCTGTCATCTGAA+AGG | + | chr8_4:48807411-48807430 | None:intergenic | 30.0% | |
| ! | AACTTAATACCTTTTCCTCA+GGG | - | chr8_4:48807439-48807458 | Msa1329860:intron | 30.0% |
| TTCACTCTCTTCTTCTTATG+CGG | + | chr8_4:48804922-48804941 | None:intergenic | 35.0% | |
| ! | TGACTTGTAAGACCAGAAAA+AGG | + | chr8_4:48805544-48805563 | None:intergenic | 35.0% |
| CCTCATACATAACAGTGTAA+CGG | + | chr8_4:48805913-48805932 | None:intergenic | 35.0% | |
| CGTTACACTGTTATGTATGA+GGG | - | chr8_4:48805911-48805930 | Msa1329860:intron | 35.0% | |
| TATACTTCCACAATATCACC+TGG | + | chr8_4:48806034-48806053 | None:intergenic | 35.0% | |
| TCAGAATTTCTCTTGGAAGA+TGG | - | chr8_4:48806054-48806073 | Msa1329860:intron | 35.0% | |
| TTGCAGATCATATGTTGAGT+TGG | - | chr8_4:48806298-48806317 | Msa1329860:CDS | 35.0% | |
| AGATGTAACAAAGCAAGAGT+TGG | - | chr8_4:48806835-48806854 | Msa1329860:intron | 35.0% | |
| TGTACATGTTTAAGTGGTGT+GGG | + | chr8_4:48806868-48806887 | None:intergenic | 35.0% | |
| TTGTACATGTTTAAGTGGTG+TGG | + | chr8_4:48806869-48806888 | None:intergenic | 35.0% | |
| TCTGTAAACAGTAGGAAGAA+TGG | - | chr8_4:48806937-48806956 | Msa1329860:intron | 35.0% | |
| CTGTAAACAGTAGGAAGAAT+GGG | - | chr8_4:48806938-48806957 | Msa1329860:intron | 35.0% | |
| GAAGAATGGGATTGTTGATA+TGG | - | chr8_4:48806951-48806970 | Msa1329860:intron | 35.0% | |
| AACAAACAGAGCAGTACTAT+CGG | + | chr8_4:48807046-48807065 | None:intergenic | 35.0% | |
| CAATTTATAGGAATTCCCAC+TGG | + | chr8_4:48807085-48807104 | None:intergenic | 35.0% | |
| GAACTGTCTACATCTTCAAA+TGG | + | chr8_4:48807129-48807148 | None:intergenic | 35.0% | |
| TAGTATTCCTTTCAGATGAC+AGG | - | chr8_4:48807401-48807420 | Msa1329860:intron | 35.0% | |
| ! | CAACTTAATACCTTTTCCTC+AGG | - | chr8_4:48807438-48807457 | Msa1329860:intron | 35.0% |
| AGGCTAGCAAAAATCTAGTA+TGG | + | chr8_4:48807473-48807492 | None:intergenic | 35.0% | |
| TTTCTTCTTACAGTTGAACG+AGG | + | chr8_4:48807493-48807512 | None:intergenic | 35.0% | |
| GAAAACATCGTCTTCTCCAT+CGG | - | chr8_4:48804961-48804980 | Msa1329860:three_prime_UTR | 40.0% | |
| AATGAGTGACCTTATTCCGA+TGG | + | chr8_4:48804980-48804999 | None:intergenic | 40.0% | |
| ACGATCATGCGATTCAAGAA+AGG | - | chr8_4:48805806-48805825 | Msa1329860:CDS | 40.0% | |
| CGATCATGCGATTCAAGAAA+GGG | - | chr8_4:48805807-48805826 | Msa1329860:CDS | 40.0% | |
| ATTCAAGAAAGGGACTAAGG+TGG | - | chr8_4:48805817-48805836 | Msa1329860:CDS | 40.0% | |
| CATACATAACAGTGTAACGG+TGG | + | chr8_4:48805910-48805929 | None:intergenic | 40.0% | |
| CCGTTACACTGTTATGTATG+AGG | - | chr8_4:48805910-48805929 | Msa1329860:intron | 40.0% | |
| GTTATGTATGAGGGATTTCG+AGG | - | chr8_4:48805920-48805939 | Msa1329860:intron | 40.0% | |
| TCCTATGGATGAGGAAATTG+TGG | - | chr8_4:48805943-48805962 | Msa1329860:intron | 40.0% | |
| TCCACAATTTCCTCATCCAT+AGG | + | chr8_4:48805947-48805966 | None:intergenic | 40.0% | |
| CAATTCTCCACAAGTTCAAG+TGG | + | chr8_4:48806007-48806026 | None:intergenic | 40.0% | |
| CACTTGAACTTGTGGAGAAT+TGG | - | chr8_4:48806005-48806024 | Msa1329860:intron | 40.0% | |
| TTTCTCTTGGAAGATGGCTA+CGG | - | chr8_4:48806060-48806079 | Msa1329860:intron | 40.0% | |
| !!! | GCTACGGTTTTGAAGGTTTT+GGG | - | chr8_4:48806076-48806095 | Msa1329860:intron | 40.0% |
| !!! | CTACGGTTTTGAAGGTTTTG+GGG | - | chr8_4:48806077-48806096 | Msa1329860:intron | 40.0% |
| ! | GGAAAAAGTGCATTGCTGTT+AGG | - | chr8_4:48806098-48806117 | Msa1329860:intron | 40.0% |
| ! | TTTGTACTGGCAAGGACAAT+TGG | + | chr8_4:48806273-48806292 | None:intergenic | 40.0% |
| ATCTGCAACCACATTTGTAC+TGG | + | chr8_4:48806286-48806305 | None:intergenic | 40.0% | |
| TGAACCTCTGCCAAAGTTAA+GGG | - | chr8_4:48806795-48806814 | Msa1329860:intron | 40.0% | |
| TCCTCAATTGCCCTTAACTT+TGG | + | chr8_4:48806808-48806827 | None:intergenic | 40.0% | |
| TTAAGGGCAATTGAGGATGA+TGG | - | chr8_4:48806811-48806830 | Msa1329860:intron | 40.0% | |
| TTGTTGATATGGACACAGAG+AGG | - | chr8_4:48806962-48806981 | Msa1329860:intron | 40.0% | |
| AGGAAACAAATTGCTGCTGT+GGG | - | chr8_4:48806985-48807004 | Msa1329860:intron | 40.0% | |
| GATAGTACTGCTCTGTTTGT+TGG | - | chr8_4:48807045-48807064 | Msa1329860:intron | 40.0% | |
| TTGCAATTTCCTGTATCTGC+AGG | - | chr8_4:48807102-48807121 | Msa1329860:intron | 40.0% | |
| ! | CTTGCCAATTCTTTTCGTGT+GGG | + | chr8_4:48807210-48807229 | None:intergenic | 40.0% |
| TGCCTATCGTTGTACAATTG+AGG | - | chr8_4:48807254-48807273 | Msa1329860:intron | 40.0% | |
| TGCCTCAATTGTACAACGAT+AGG | + | chr8_4:48807259-48807278 | None:intergenic | 40.0% | |
| GCTTCTTGTTCCCAACTTAA+AGG | + | chr8_4:48807297-48807316 | None:intergenic | 40.0% | |
| ATATGTTAAGCGAAAGACGG+AGG | + | chr8_4:48807332-48807351 | None:intergenic | 40.0% | |
| TCGTCTTCTCCATCGGAATA+AGG | - | chr8_4:48804968-48804987 | Msa1329860:three_prime_UTR | 45.0% | |
| GCGATTCAAGAAAGGGACTA+AGG | - | chr8_4:48805814-48805833 | Msa1329860:CDS | 45.0% | |
| ATTTCGAGGTCCTATGGATG+AGG | - | chr8_4:48805934-48805953 | Msa1329860:intron | 45.0% | |
| TTCTCCACAAGTTCAAGTGG+CGG | + | chr8_4:48806004-48806023 | None:intergenic | 45.0% | |
| TTGGACTCCAGGTGATATTG+TGG | - | chr8_4:48806024-48806043 | Msa1329860:intron | 45.0% | |
| !! | GAAGATGGCTACGGTTTTGA+AGG | - | chr8_4:48806069-48806088 | Msa1329860:intron | 45.0% |
| !!! | GGCTACGGTTTTGAAGGTTT+TGG | - | chr8_4:48806075-48806094 | Msa1329860:intron | 45.0% |
| ! | TGCATTGCTGTTAGGCTACT+TGG | - | chr8_4:48806106-48806125 | Msa1329860:intron | 45.0% |
| TAGGCTACTTGGATCTTCTG+TGG | - | chr8_4:48806117-48806136 | Msa1329860:intron | 45.0% | |
| GCAAGATGACAAGTGGTTTG+TGG | - | chr8_4:48806183-48806202 | Msa1329860:intron | 45.0% | |
| ! | AGATGACAAGTGGTTTGTGG+TGG | - | chr8_4:48806186-48806205 | Msa1329860:intron | 45.0% |
| ! | GATGACAAGTGGTTTGTGGT+GGG | - | chr8_4:48806187-48806206 | Msa1329860:intron | 45.0% |
| TGTCCTTGCCAGTACAAATG+TGG | - | chr8_4:48806275-48806294 | Msa1329860:CDS | 45.0% | |
| ! | CAACCACATTTGTACTGGCA+AGG | + | chr8_4:48806281-48806300 | None:intergenic | 45.0% |
| GGTTCTGCTAGCTGTGATAA+TGG | - | chr8_4:48806610-48806629 | Msa1329860:CDS | 45.0% | |
| AGGACGTCATTCACAAGTTG+AGG | - | chr8_4:48806765-48806784 | Msa1329860:intron | 45.0% | |
| CTGAACCTCTGCCAAAGTTA+AGG | - | chr8_4:48806794-48806813 | Msa1329860:intron | 45.0% | |
| ATTGCCCTTAACTTTGGCAG+AGG | + | chr8_4:48806802-48806821 | None:intergenic | 45.0% | |
| GCCAAAGTTAAGGGCAATTG+AGG | - | chr8_4:48806804-48806823 | Msa1329860:intron | 45.0% | |
| CATGTTTAAGTGGTGTGGGT+GGG | + | chr8_4:48806864-48806883 | None:intergenic | 45.0% | |
| ACATGTTTAAGTGGTGTGGG+TGG | + | chr8_4:48806865-48806884 | None:intergenic | 45.0% | |
| TTGATATGGACACAGAGAGG+AGG | - | chr8_4:48806965-48806984 | Msa1329860:intron | 45.0% | |
| GAGGAAACAAATTGCTGCTG+TGG | - | chr8_4:48806984-48807003 | Msa1329860:intron | 45.0% | |
| GTAGCTGTAGTATCACCAGT+GGG | - | chr8_4:48807067-48807086 | Msa1329860:intron | 45.0% | |
| TCAAATGGACCTGCAGATAC+AGG | + | chr8_4:48807114-48807133 | None:intergenic | 45.0% | |
| ! | CAATTCTTTTCGTGTGGGAC+GGG | + | chr8_4:48807205-48807224 | None:intergenic | 45.0% |
| ! | CCAATTCTTTTCGTGTGGGA+CGG | + | chr8_4:48807206-48807225 | None:intergenic | 45.0% |
| ! | CCTTGCCAATTCTTTTCGTG+TGG | + | chr8_4:48807211-48807230 | None:intergenic | 45.0% |
| CCACACGAAAAGAATTGGCA+AGG | - | chr8_4:48807208-48807227 | Msa1329860:intron | 45.0% | |
| !! | ATTGAGGCATTGTTTGCGTC+AGG | - | chr8_4:48807270-48807289 | Msa1329860:intron | 45.0% |
| TTGCGTCAGGACCTTTAAGT+TGG | - | chr8_4:48807283-48807302 | Msa1329860:intron | 45.0% | |
| ! | TGCGTCAGGACCTTTAAGTT+GGG | - | chr8_4:48807284-48807303 | Msa1329860:intron | 45.0% |
| GAACTCTAACCCTGAGGAAA+AGG | + | chr8_4:48807451-48807470 | None:intergenic | 45.0% | |
| AGTATGGAACTCTAACCCTG+AGG | + | chr8_4:48807457-48807476 | None:intergenic | 45.0% | |
| !! | GGAAGTGCTAAGCAAAGCTG+AGG | - | chr8_4:48805838-48805857 | Msa1329860:CDS | 50.0% |
| TGGCTATGCGCAGAGATCAT+CGG | - | chr8_4:48805875-48805894 | Msa1329860:intron | 50.0% | |
| GCAGAGATCATCGGTGGTAA+GGG | - | chr8_4:48805884-48805903 | Msa1329860:intron | 50.0% | |
| TGAGGGATTTCGAGGTCCTA+TGG | - | chr8_4:48805928-48805947 | Msa1329860:intron | 50.0% | |
| CTTGTGGAGAATTGGACTCC+AGG | - | chr8_4:48806013-48806032 | Msa1329860:intron | 50.0% | |
| ATATTCGGGTCAGACAGTCG+TGG | - | chr8_4:48806161-48806180 | Msa1329860:intron | 50.0% | |
| AGTCGTGGCAAGATGACAAG+TGG | - | chr8_4:48806176-48806195 | Msa1329860:intron | 50.0% | |
| ! | CAAGTGGTTTGTGGTGGGAA+AGG | - | chr8_4:48806192-48806211 | Msa1329860:intron | 50.0% |
| TCTTCAGCTGGCACATGTCT+TGG | + | chr8_4:48806904-48806923 | None:intergenic | 50.0% | |
| ! | GCTGCTGTGGGTTGTTCATT+TGG | - | chr8_4:48806997-48807016 | Msa1329860:intron | 50.0% |
| GGTAGCTGTAGTATCACCAG+TGG | - | chr8_4:48807066-48807085 | Msa1329860:intron | 50.0% | |
| ATGCTGAATCTACCTGCGAG+AGG | - | chr8_4:48807157-48807176 | Msa1329860:intron | 50.0% | |
| TGCTGAATCTACCTGCGAGA+GGG | - | chr8_4:48807158-48807177 | Msa1329860:intron | 50.0% | |
| CCGTCCCACACGAAAAGAAT+TGG | - | chr8_4:48807203-48807222 | Msa1329860:intron | 50.0% | |
| ! | AGCAAAGCTGAGGTGCCTTC+TGG | - | chr8_4:48805848-48805867 | Msa1329860:intron | 55.0% |
| GATGATCTCTGCGCATAGCC+AGG | + | chr8_4:48805876-48805895 | None:intergenic | 55.0% | |
| CTATGCGCAGAGATCATCGG+TGG | - | chr8_4:48805878-48805897 | Msa1329860:intron | 55.0% | |
| CGCAGAGATCATCGGTGGTA+AGG | - | chr8_4:48805883-48805902 | Msa1329860:intron | 55.0% | |
| TCCACAAGTTCAAGTGGCGG+CGG | + | chr8_4:48806001-48806020 | None:intergenic | 55.0% | |
| GCTGAATCTACCTGCGAGAG+GGG | - | chr8_4:48807159-48807178 | Msa1329860:intron | 55.0% | |
| CTGAATCTACCTGCGAGAGG+GGG | - | chr8_4:48807160-48807179 | Msa1329860:intron | 55.0% | |
| AGTTCAAGTGGCGGCGGACA+CGG | + | chr8_4:48805995-48806014 | None:intergenic | 60.0% | |
| TCCGCCGCCACTTGAACTTG+TGG | - | chr8_4:48805997-48806016 | Msa1329860:intron | 60.0% | |
| ! | TACCTGCGAGAGGGGGTACA+TGG | - | chr8_4:48807167-48807186 | Msa1329860:intron | 60.0% |
| TTCCATGTACCCCCTCTCGC+AGG | + | chr8_4:48807172-48807191 | None:intergenic | 60.0% | |
| !! | CTGAGGTGCCTTCTGGCTCC+TGG | - | chr8_4:48805855-48805874 | Msa1329860:intron | 65.0% |
| GCGCATAGCCAGGAGCCAGA+AGG | + | chr8_4:48805866-48805885 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 48804895 | 48807577 | 48804895 | ID=Msa1329860;Name=Msa1329860 |
| chr8_4 | mRNA | 48804895 | 48807577 | 48804895 | ID=Msa1329860-mRNA-1;Parent=Msa1329860;Name=Msa1329860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|1|1|1|0.5|0.33|3|158|440 |
| chr8_4 | exon | 48804895 | 48805862 | 48804895 | ID=Msa1329860-mRNA-1:exon:14077;Parent=Msa1329860-mRNA-1 |
| chr8_4 | exon | 48806259 | 48806676 | 48806259 | ID=Msa1329860-mRNA-1:exon:14076;Parent=Msa1329860-mRNA-1 |
| chr8_4 | exon | 48807483 | 48807577 | 48807483 | ID=Msa1329860-mRNA-1:exon:14075;Parent=Msa1329860-mRNA-1 |
| chr8_4 | CDS | 48807483 | 48807577 | 48807483 | ID=Msa1329860-mRNA-1:cds;Parent=Msa1329860-mRNA-1 |
| chr8_4 | CDS | 48806259 | 48806676 | 48806259 | ID=Msa1329860-mRNA-1:cds;Parent=Msa1329860-mRNA-1 |
| chr8_4 | CDS | 48805053 | 48805862 | 48805053 | ID=Msa1329860-mRNA-1:cds;Parent=Msa1329860-mRNA-1 |
| chr8_4 | three_prime_UTR | 48804895 | 48805052 | 48804895 | ID=Msa1329860-mRNA-1:three_prime_utr;Parent=Msa1329860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
