Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0148340 | Msa1228650 | -0.814819 | 1.268874e-51 | -8.615850e-47 |
| Msa1228650 | Msa1362510 | -0.809461 | 1.870389e-50 | -8.615850e-47 |
| Msa0259560 | Msa1228650 | -0.806869 | 6.672183e-50 | -8.615850e-47 |
| Msa1130210 | Msa1228650 | 0.812390 | 4.343048e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAATGGCATCAAAATTA+TGG | 0.152782 | 8_2:+4135396 | Msa1228650:CDS |
| AAAATTATGGGGATGGTTAT+TGG | 0.227190 | 8_2:+4135409 | Msa1228650:CDS |
| AACTAGTTATGTTAGAATAA+AGG | 0.320846 | 8_2:+4137972 | Msa1228650:three_prime_UTR |
| TGTTAGAATAAAGGTGTGTT+TGG | 0.333215 | 8_2:+4137981 | Msa1228650:three_prime_UTR |
| ATTGGTTCTATTCTCTTTGT+TGG | 0.345603 | 8_2:+4135437 | Msa1228650:CDS |
| TACACAGCAACCACAATTAT+AGG | 0.353055 | 8_2:-4137638 | None:intergenic |
| TCCAATGGCATCAAAATTAT+GGG | 0.359565 | 8_2:+4135397 | Msa1228650:CDS |
| GTTAGAATAAAGGTGTGTTT+GGG | 0.408033 | 8_2:+4137982 | Msa1228650:three_prime_UTR |
| TTGTTTCTCTGACAGTATAT+AGG | 0.417996 | 8_2:-4137732 | None:intergenic |
| GGATGGTTATTGGTATCAAT+TGG | 0.425756 | 8_2:+4135419 | Msa1228650:CDS |
| TTAATATGTGTATACATGAT+TGG | 0.440263 | 8_2:+4137856 | Msa1228650:CDS |
| TAGACGAATGCTGGTCCTGC+AGG | 0.441472 | 8_2:-4137785 | None:intergenic |
| CATTAGAATCTTGGATGTGG+TGG | 0.472554 | 8_2:+4137910 | Msa1228650:three_prime_UTR |
| ACAAAGTCGGATCCTTAAGT+TGG | 0.480401 | 8_2:-4137809 | None:intergenic |
| TGGTTGCTGTGTACTTCCAT+TGG | 0.486755 | 8_2:+4137648 | Msa1228650:CDS |
| TAAGTTGGTTAGACGAATGC+TGG | 0.493242 | 8_2:-4137794 | None:intergenic |
| GCATTCGTCTAACCAACTTA+AGG | 0.509561 | 8_2:+4137797 | Msa1228650:CDS |
| ATTGACTCTGCCTATAATTG+TGG | 0.522793 | 8_2:+4137628 | Msa1228650:CDS |
| ACAATTATAGGCAGAGTCAA+TGG | 0.534933 | 8_2:-4137626 | None:intergenic |
| ATGCTTCAGTGTTAATCCAA+TGG | 0.542036 | 8_2:+4135382 | None:intergenic |
| ACATAAAATTTGAACAAAGT+CGG | 0.547733 | 8_2:-4137822 | None:intergenic |
| ATTAGAATCTTGGATGTGGT+GGG | 0.558775 | 8_2:+4137911 | Msa1228650:three_prime_UTR |
| ATGTATACACATATTAAAGC+AGG | 0.565829 | 8_2:-4137850 | None:intergenic |
| TGGCATCAAAATTATGGGGA+TGG | 0.566994 | 8_2:+4135402 | Msa1228650:CDS |
| TTACATTAGAATCTTGGATG+TGG | 0.569933 | 8_2:+4137907 | Msa1228650:three_prime_UTR |
| ACATCTTCATACTGAGCCAA+TGG | 0.576398 | 8_2:-4137664 | None:intergenic |
| AGACGAATGCTGGTCCTGCA+GGG | 0.609040 | 8_2:-4137784 | None:intergenic |
| GTACATGACATGAAAACTGA+AGG | 0.615696 | 8_2:-4137937 | None:intergenic |
| CCAATGGCATCAAAATTATG+GGG | 0.632703 | 8_2:+4135398 | Msa1228650:CDS |
| TACTGTCAGAGAAACAACCA+TGG | 0.735508 | 8_2:+4137738 | Msa1228650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAACTTTATTTTATCTTT+TGG | - | chr8_2:4135585-4135604 | None:intergenic | 10.0% |
| !! | TTATTATTTCGTAAATTTGA+CGG | + | chr8_2:4135939-4135958 | Msa1228650:intron | 15.0% |
| !! | TAGTGAATATGATTTATTAT+AGG | + | chr8_2:4136249-4136268 | Msa1228650:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr8_2:4137113-4137132 | Msa1228650:intron | 15.0% |
| !! | TATTATGAGTTTATCTACTT+AGG | + | chr8_2:4135659-4135678 | Msa1228650:intron | 20.0% |
| !! | ATTATGAGTTTATCTACTTA+GGG | + | chr8_2:4135660-4135679 | Msa1228650:intron | 20.0% |
| !!! | ATAAGTTTTGTGAGATTTTT+TGG | + | chr8_2:4135698-4135717 | Msa1228650:intron | 20.0% |
| !!! | TAAGTTTTGTGAGATTTTTT+GGG | + | chr8_2:4135699-4135718 | Msa1228650:intron | 20.0% |
| !!! | ATTGCTATTTGATAAATTTG+AGG | - | chr8_2:4135753-4135772 | None:intergenic | 20.0% |
| !! | TGTTGTCAAATTATTATGTT+AGG | + | chr8_2:4136113-4136132 | Msa1228650:intron | 20.0% |
| !!! | CTTTTTGTTTTATACAACTT+TGG | + | chr8_2:4136141-4136160 | Msa1228650:intron | 20.0% |
| !!! | AAAGTACTATTTTTTGTTTG+AGG | + | chr8_2:4136181-4136200 | Msa1228650:intron | 20.0% |
| !! | TCAAATTTCACTATGTTATA+GGG | - | chr8_2:4136484-4136503 | None:intergenic | 20.0% |
| !! | TTCAAATTTCACTATGTTAT+AGG | - | chr8_2:4136485-4136504 | None:intergenic | 20.0% |
| !! | AATAGTTAATGAGGATAATT+TGG | - | chr8_2:4137090-4137109 | None:intergenic | 20.0% |
| !! | AAATTATCCTCATTAACTAT+TGG | + | chr8_2:4137089-4137108 | Msa1228650:intron | 20.0% |
| !!! | AAACCTTTAATTTATGTGAT+TGG | + | chr8_2:4137304-4137323 | Msa1228650:intron | 20.0% |
| !! | ACATAAAATTTGAACAAAGT+CGG | - | chr8_2:4137825-4137844 | None:intergenic | 20.0% |
| !! | TTAATATGTGTATACATGAT+TGG | + | chr8_2:4137856-4137875 | Msa1228650:CDS | 20.0% |
| !!! | TTTGTTTTACATTAGAATCT+TGG | + | chr8_2:4137901-4137920 | Msa1228650:three_prime_UTR | 20.0% |
| !! | AACTAGTTATGTTAGAATAA+AGG | + | chr8_2:4137972-4137991 | Msa1228650:three_prime_UTR | 20.0% |
| ! | TCCCTTAAATTGAATAATGT+CGG | + | chr8_2:4135777-4135796 | Msa1228650:intron | 25.0% |
| ! | ACCGACATTATTCAATTTAA+GGG | - | chr8_2:4135781-4135800 | None:intergenic | 25.0% |
| ! | TACCGACATTATTCAATTTA+AGG | - | chr8_2:4135782-4135801 | None:intergenic | 25.0% |
| !!! | ATGTTATGTTTTTGTCTTGA+TGG | + | chr8_2:4135839-4135858 | Msa1228650:intron | 25.0% |
| ! | TTCAGAGTAAATCAACATTT+AGG | - | chr8_2:4135997-4136016 | None:intergenic | 25.0% |
| ! | ATGTTATAGTGTTGTCTTAT+TGG | + | chr8_2:4136063-4136082 | Msa1228650:intron | 25.0% |
| !! | TGTTATAGTGTTGTCTTATT+GGG | + | chr8_2:4136064-4136083 | Msa1228650:intron | 25.0% |
| !!! | TTTGTTTTATACAACTTTGG+TGG | + | chr8_2:4136144-4136163 | Msa1228650:intron | 25.0% |
| ! | TAAACTATGAAGAAGGATAT+AGG | + | chr8_2:4136210-4136229 | Msa1228650:intron | 25.0% |
| ! | AAACTATGAAGAAGGATATA+GGG | + | chr8_2:4136211-4136230 | Msa1228650:intron | 25.0% |
| !!! | ATTTGTTATAGGGAAAATAG+TGG | - | chr8_2:4136546-4136565 | None:intergenic | 25.0% |
| !!! | ACCTTTTCTCATTTGTTATA+GGG | - | chr8_2:4136556-4136575 | None:intergenic | 25.0% |
| ! | AATAAGCAAAGCAAAAAAAC+AGG | - | chr8_2:4136593-4136612 | None:intergenic | 25.0% |
| ! | GCTTATATATGTGATTACAA+AGG | + | chr8_2:4136787-4136806 | Msa1228650:intron | 25.0% |
| ! | AATGATTAAGAGAAAGAGAA+TGG | + | chr8_2:4137056-4137075 | Msa1228650:intron | 25.0% |
| ! | AAACTAACCAATAGTTAATG+AGG | - | chr8_2:4137099-4137118 | None:intergenic | 25.0% |
| ! | ATGCCAATCACATAAATTAA+AGG | - | chr8_2:4137310-4137329 | None:intergenic | 25.0% |
| ! | AAAAAAATCTGCAATAACCA+TGG | - | chr8_2:4137758-4137777 | None:intergenic | 25.0% |
| ! | ATGTATACACATATTAAAGC+AGG | - | chr8_2:4137853-4137872 | None:intergenic | 25.0% |
| ATCCAATGGCATCAAAATTA+TGG | + | chr8_2:4135396-4135415 | Msa1228650:CDS | 30.0% | |
| TCCAATGGCATCAAAATTAT+GGG | + | chr8_2:4135397-4135416 | Msa1228650:CDS | 30.0% | |
| AAAATTATGGGGATGGTTAT+TGG | + | chr8_2:4135409-4135428 | Msa1228650:CDS | 30.0% | |
| !! | ATTGGTTCTATTCTCTTTGT+TGG | + | chr8_2:4135437-4135456 | Msa1228650:CDS | 30.0% |
| ! | AGTTATGTTACCAGTCATTT+TGG | - | chr8_2:4135529-4135548 | None:intergenic | 30.0% |
| TTGAATAATGTCGGTAAGTT+TGG | + | chr8_2:4135786-4135805 | Msa1228650:intron | 30.0% | |
| TTGATGGAACAAGAATACAT+AGG | + | chr8_2:4135855-4135874 | Msa1228650:intron | 30.0% | |
| AGAATACATAGGTCTTTCAT+TGG | + | chr8_2:4135866-4135885 | Msa1228650:intron | 30.0% | |
| ATTGACCTTCTTCAATGTAA+GGG | + | chr8_2:4135911-4135930 | Msa1228650:intron | 30.0% | |
| ATTATCCCTTACATTGAAGA+AGG | - | chr8_2:4135919-4135938 | None:intergenic | 30.0% | |
| GATAAGCTAAACTATGAAGA+AGG | + | chr8_2:4136203-4136222 | Msa1228650:intron | 30.0% | |
| GAAGGATATAGGGATTTAAA+TGG | + | chr8_2:4136221-4136240 | Msa1228650:intron | 30.0% | |
| !! | TATGCAACATTTTAGTGTAG+CGG | + | chr8_2:4136392-4136411 | Msa1228650:intron | 30.0% |
| ! | TACAATGTGTTGTTAAACAG+TGG | + | chr8_2:4136450-4136469 | Msa1228650:intron | 30.0% |
| TTGTAAATTGCGGAAAATAG+TGG | - | chr8_2:4136512-4136531 | None:intergenic | 30.0% | |
| !! | ATGGAAAGTGTTGTAAATTG+CGG | - | chr8_2:4136522-4136541 | None:intergenic | 30.0% |
| ! | TTATAGGGAAAATAGTGGAA+TGG | - | chr8_2:4136541-4136560 | None:intergenic | 30.0% |
| TCCCTATAACAAATGAGAAA+AGG | + | chr8_2:4136552-4136571 | Msa1228650:intron | 30.0% | |
| !!! | CACCTTTTCTCATTTGTTAT+AGG | - | chr8_2:4136557-4136576 | None:intergenic | 30.0% |
| AAAGTTTCATAGCTGTTCAT+AGG | - | chr8_2:4136640-4136659 | None:intergenic | 30.0% | |
| !! | ATCCTTTTAAAGAGGTGATT+GGG | - | chr8_2:4136750-4136769 | None:intergenic | 30.0% |
| !! | AATCCTTTTAAAGAGGTGAT+TGG | - | chr8_2:4136751-4136770 | None:intergenic | 30.0% |
| !! | ACATCGAAATCCTTTTAAAG+AGG | - | chr8_2:4136758-4136777 | None:intergenic | 30.0% |
| TAGTTATCAACATTCAGTGT+AGG | + | chr8_2:4136816-4136835 | Msa1228650:intron | 30.0% | |
| AGTTATCAACATTCAGTGTA+GGG | + | chr8_2:4136817-4136836 | Msa1228650:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr8_2:4137007-4137026 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr8_2:4137008-4137027 | Msa1228650:intron | 30.0% |
| TAGCAGGATATGTGAAAAAT+CGG | - | chr8_2:4137361-4137380 | None:intergenic | 30.0% | |
| TATGCAAGTGATGAATGATA+TGG | + | chr8_2:4137435-4137454 | Msa1228650:intron | 30.0% | |
| ATGGCAATGAAAATCATTTC+AGG | + | chr8_2:4137454-4137473 | Msa1228650:intron | 30.0% | |
| GAATACAAGTCAGGAAAATA+AGG | - | chr8_2:4137578-4137597 | None:intergenic | 30.0% | |
| CTATGAAATGAATACAAGTC+AGG | - | chr8_2:4137587-4137606 | None:intergenic | 30.0% | |
| ! | CTGACTTGTATTCATTTCAT+AGG | + | chr8_2:4137585-4137604 | Msa1228650:intron | 30.0% |
| ! | TTGTTTCTCTGACAGTATAT+AGG | - | chr8_2:4137735-4137754 | None:intergenic | 30.0% |
| TTACATTAGAATCTTGGATG+TGG | + | chr8_2:4137907-4137926 | Msa1228650:three_prime_UTR | 30.0% | |
| ! | TGTTAGAATAAAGGTGTGTT+TGG | + | chr8_2:4137981-4138000 | Msa1228650:three_prime_UTR | 30.0% |
| ! | GTTAGAATAAAGGTGTGTTT+GGG | + | chr8_2:4137982-4138001 | Msa1228650:three_prime_UTR | 30.0% |
| CCAATGGCATCAAAATTATG+GGG | + | chr8_2:4135398-4135417 | Msa1228650:CDS | 35.0% | |
| GGATGGTTATTGGTATCAAT+TGG | + | chr8_2:4135419-4135438 | Msa1228650:CDS | 35.0% | |
| TTTGGAAGGAAGAGATGAAA+GGG | - | chr8_2:4135511-4135530 | None:intergenic | 35.0% | |
| !! | TTTTGGAAGGAAGAGATGAA+AGG | - | chr8_2:4135512-4135531 | None:intergenic | 35.0% |
| !! | ATGTTACCAGTCATTTTGGA+AGG | - | chr8_2:4135525-4135544 | None:intergenic | 35.0% |
| GGTGAACGTATGAAATTGTA+AGG | + | chr8_2:4135720-4135739 | Msa1228650:intron | 35.0% | |
| !!! | AGGTCTTTCATTGGTTTTGA+TGG | + | chr8_2:4135875-4135894 | Msa1228650:intron | 35.0% |
| !!! | TCTTTCATTGGTTTTGATGG+AGG | + | chr8_2:4135878-4135897 | Msa1228650:intron | 35.0% |
| !!! | CTTTCATTGGTTTTGATGGA+GGG | + | chr8_2:4135879-4135898 | Msa1228650:intron | 35.0% |
| GATTGACCTTCTTCAATGTA+AGG | + | chr8_2:4135910-4135929 | Msa1228650:intron | 35.0% | |
| GACAACACTATAACATGTTC+AGG | - | chr8_2:4136059-4136078 | None:intergenic | 35.0% | |
| ! | TATTTTCTCACTGTCTGGTT+AGG | - | chr8_2:4136303-4136322 | None:intergenic | 35.0% |
| TTTCCATTCCATGAAGTGAA+TGG | + | chr8_2:4136657-4136676 | Msa1228650:intron | 35.0% | |
| AACTTGAACCATTCACTTCA+TGG | - | chr8_2:4136668-4136687 | None:intergenic | 35.0% | |
| ! | TTAACTGACTTAGCTAGCTA+GGG | - | chr8_2:4136716-4136735 | None:intergenic | 35.0% |
| ! | TTTAACTGACTTAGCTAGCT+AGG | - | chr8_2:4136717-4136736 | None:intergenic | 35.0% |
| !! | TCCTTTTAAAGAGGTGATTG+GGG | - | chr8_2:4136749-4136768 | None:intergenic | 35.0% |
| AGTGTAGGGAAGTTATCATT+TGG | + | chr8_2:4136831-4136850 | Msa1228650:intron | 35.0% | |
| AAGTCCACCTTTCAATGTTA+AGG | + | chr8_2:4136865-4136884 | Msa1228650:intron | 35.0% | |
| AGTCCACCTTTCAATGTTAA+GGG | + | chr8_2:4136866-4136885 | Msa1228650:intron | 35.0% | |
| ATTGCACCCTTAACATTGAA+AGG | - | chr8_2:4136875-4136894 | None:intergenic | 35.0% | |
| GGTGCAATGTTGTCAAATAT+CGG | + | chr8_2:4136907-4136926 | Msa1228650:intron | 35.0% | |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr8_2:4137138-4137157 | Msa1228650:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr8_2:4137142-4137161 | Msa1228650:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr8_2:4137206-4137225 | Msa1228650:intron | 35.0% |
| ACAAGTCAGGAAAATAAGGA+GGG | - | chr8_2:4137574-4137593 | None:intergenic | 35.0% | |
| TACAAGTCAGGAAAATAAGG+AGG | - | chr8_2:4137575-4137594 | None:intergenic | 35.0% | |
| ACAATTATAGGCAGAGTCAA+TGG | - | chr8_2:4137629-4137648 | None:intergenic | 35.0% | |
| ! | ATTGACTCTGCCTATAATTG+TGG | + | chr8_2:4137628-4137647 | Msa1228650:CDS | 35.0% |
| TACACAGCAACCACAATTAT+AGG | - | chr8_2:4137641-4137660 | None:intergenic | 35.0% | |
| ATTAGAATCTTGGATGTGGT+GGG | + | chr8_2:4137911-4137930 | Msa1228650:three_prime_UTR | 35.0% | |
| GTACATGACATGAAAACTGA+AGG | - | chr8_2:4137940-4137959 | None:intergenic | 35.0% | |
| !! | CCCCATAATTTTGATGCCAT+TGG | - | chr8_2:4135401-4135420 | None:intergenic | 40.0% |
| TGGCATCAAAATTATGGGGA+TGG | + | chr8_2:4135402-4135421 | Msa1228650:CDS | 40.0% | |
| ATGAAAGGGTTATTGGAAGG+AGG | - | chr8_2:4135497-4135516 | None:intergenic | 40.0% | |
| GAGATGAAAGGGTTATTGGA+AGG | - | chr8_2:4135500-4135519 | None:intergenic | 40.0% | |
| GGAAGAGATGAAAGGGTTAT+TGG | - | chr8_2:4135504-4135523 | None:intergenic | 40.0% | |
| TCTCTTCCTTCCAAAATGAC+TGG | + | chr8_2:4135516-4135535 | Msa1228650:intron | 40.0% | |
| !! | CGAAGTATTTTCTCACTGTC+TGG | - | chr8_2:4136308-4136327 | None:intergenic | 40.0% |
| GAACCATTCACTTCATGGAA+TGG | - | chr8_2:4136663-4136682 | None:intergenic | 40.0% | |
| TCCCCAATCACCTCTTTAAA+AGG | + | chr8_2:4136745-4136764 | Msa1228650:intron | 40.0% | |
| AGGATTTCGATGTCTCGAAT+AGG | + | chr8_2:4136765-4136784 | Msa1228650:intron | 40.0% | |
| ! | TTGAAAGGTGGACTTATGTG+TGG | - | chr8_2:4136860-4136879 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8_2:4137246-4137265 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr8_2:4137141-4137160 | Msa1228650:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8_2:4137246-4137265 | Msa1228650:intron | 40.0% |
| CATAGTCCAAACTCCAAAAG+GGG | - | chr8_2:4137395-4137414 | None:intergenic | 40.0% | |
| CCATAGTCCAAACTCCAAAA+GGG | - | chr8_2:4137396-4137415 | None:intergenic | 40.0% | |
| !!! | CCTTTTGGAGTTTGGACTAT+GGG | + | chr8_2:4137394-4137413 | Msa1228650:intron | 40.0% |
| !!! | CTTTTGGAGTTTGGACTATG+GGG | + | chr8_2:4137395-4137414 | Msa1228650:intron | 40.0% |
| ACATCTTCATACTGAGCCAA+TGG | - | chr8_2:4137667-4137686 | None:intergenic | 40.0% | |
| TACTGTCAGAGAAACAACCA+TGG | + | chr8_2:4137738-4137757 | Msa1228650:CDS | 40.0% | |
| !!! | ATTTTTTTCGCAATCCCTGC+AGG | + | chr8_2:4137770-4137789 | Msa1228650:CDS | 40.0% |
| !! | TAAGTTGGTTAGACGAATGC+TGG | - | chr8_2:4137797-4137816 | None:intergenic | 40.0% |
| GCATTCGTCTAACCAACTTA+AGG | + | chr8_2:4137797-4137816 | Msa1228650:CDS | 40.0% | |
| ACAAAGTCGGATCCTTAAGT+TGG | - | chr8_2:4137812-4137831 | None:intergenic | 40.0% | |
| CATTAGAATCTTGGATGTGG+TGG | + | chr8_2:4137910-4137929 | Msa1228650:three_prime_UTR | 40.0% | |
| CACTGTCTGGTTAGGCTATA+CGG | - | chr8_2:4136295-4136314 | None:intergenic | 45.0% | |
| GCACCCTTAACATTGAAAGG+TGG | - | chr8_2:4136872-4136891 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8_2:4137245-4137264 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8_2:4137245-4137264 | Msa1228650:intron | 45.0% |
| TGTGATTGGCATCATTGTGC+TGG | + | chr8_2:4137318-4137337 | Msa1228650:intron | 45.0% | |
| ! | TATCAGCAGTCTTCCCCTTT+TGG | + | chr8_2:4137379-4137398 | Msa1228650:intron | 45.0% |
| !!! | AGTCTTCCCCTTTTGGAGTT+TGG | + | chr8_2:4137386-4137405 | Msa1228650:intron | 45.0% |
| !!! | CCCTTTTGGAGTTTGGACTA+TGG | + | chr8_2:4137393-4137412 | Msa1228650:intron | 45.0% |
| CCCATAGTCCAAACTCCAAA+AGG | - | chr8_2:4137397-4137416 | None:intergenic | 45.0% | |
| ACTCGTACCTCTCCCATAAA+AGG | + | chr8_2:4137542-4137561 | Msa1228650:intron | 45.0% | |
| GTACCTCTCCCATAAAAGGA+AGG | + | chr8_2:4137546-4137565 | Msa1228650:intron | 45.0% | |
| ! | GTTCCTTCCTTTTATGGGAG+AGG | - | chr8_2:4137552-4137571 | None:intergenic | 45.0% |
| ! | GGAGGGTTCCTTCCTTTTAT+GGG | - | chr8_2:4137557-4137576 | None:intergenic | 45.0% |
| ! | AGGAGGGTTCCTTCCTTTTA+TGG | - | chr8_2:4137558-4137577 | None:intergenic | 45.0% |
| TGGTTGCTGTGTACTTCCAT+TGG | + | chr8_2:4137648-4137667 | Msa1228650:CDS | 45.0% | |
| GACAACATTGCACCAGCACT+TGG | - | chr8_2:4136901-4136920 | None:intergenic | 50.0% | |
| ! | GGCATCATTGTGCTGGTAAC+TGG | + | chr8_2:4137325-4137344 | Msa1228650:intron | 50.0% |
| GGGTGCAATTTGCCAAGTGC+TGG | + | chr8_2:4136886-4136905 | Msa1228650:intron | 55.0% | |
| AGGGGAAGACTGCTGATAGC+AGG | - | chr8_2:4137377-4137396 | None:intergenic | 55.0% | |
| AGACGAATGCTGGTCCTGCA+GGG | - | chr8_2:4137787-4137806 | None:intergenic | 55.0% | |
| TAGACGAATGCTGGTCCTGC+AGG | - | chr8_2:4137788-4137807 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 4135393 | 4138024 | 4135393 | ID=Msa1228650;Name=Msa1228650 |
| chr8_2 | mRNA | 4135393 | 4138024 | 4135393 | ID=Msa1228650-mRNA-1;Parent=Msa1228650;Name=Msa1228650-mRNA-1;_AED=0.20;_eAED=0.31;_QI=0|0|0.5|1|0|0.5|2|136|115 |
| chr8_2 | exon | 4135393 | 4135458 | 4135393 | ID=Msa1228650-mRNA-1:exon:1374;Parent=Msa1228650-mRNA-1 |
| chr8_2 | exon | 4137607 | 4138024 | 4137607 | ID=Msa1228650-mRNA-1:exon:1375;Parent=Msa1228650-mRNA-1 |
| chr8_2 | CDS | 4135393 | 4135458 | 4135393 | ID=Msa1228650-mRNA-1:cds;Parent=Msa1228650-mRNA-1 |
| chr8_2 | CDS | 4137607 | 4137888 | 4137607 | ID=Msa1228650-mRNA-1:cds;Parent=Msa1228650-mRNA-1 |
| chr8_2 | three_prime_UTR | 4137889 | 4138024 | 4137889 | ID=Msa1228650-mRNA-1:three_prime_utr;Parent=Msa1228650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
